Psyllid ID: psy17205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYPNAQEP
Secondary Structure (PSIPRED)
cEEEEEcccccccEEcEEEEcccEEEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEcccccEEEEcccHEEEEEEEEEEcccccEEEEEEcccEccccccEEEEEcccEEEEEEEEEcHcHcccEEEEEEcccccEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
viwyketlkldttERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTdfgnyscvaensmgktRQYLElsgkypnaqep
Flexible Loop (DISEMBL)
viwyketlkldtterriietrgrrhTLIFFFHfafcrpqviwyketlkldtterrimetrgrrhtlvirKVLFTDFGNYSCVAENSMGKTRQYLelsgkypnaqep
Low Complexity Region (SEG)
VIWYKETLKLDtterriietrgrrhtLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYPNAQEP
Disordered region (IsUnstruct)
*IWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS********************
Disordered Region (DISOPRED)
VIWYKETLK**************RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL***YP*****
Disordered Region (DISEMBL)
VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYPNAQEP
Disordered Region (DISPRO)
VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYPNAQEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q95YM9	763	Fibroblast growth factor	N/A	N/A	0.650	0.090	0.328	1e-05
Q15746	1914	Myosin light chain kinase	no	N/A	0.584	0.032	0.353	4e-05
Q5VST9	7968	Obscurin OS=Homo sapiens	no	N/A	0.556	0.007	0.35	6e-05
Q5IS61	345	Opioid-binding protein/ce	no	N/A	0.537	0.165	0.396	8e-05
Q14982	345	Opioid-binding protein/ce	no	N/A	0.537	0.165	0.396	8e-05
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.622	0.011	0.333	8e-05
O01761	8081	Muscle M-line assembly pr	no	N/A	0.556	0.007	0.360	9e-05
P32736	345	Opioid-binding protein/ce	yes	N/A	0.537	0.165	0.396	0.0001
Q15772	3267	Striated muscle preferent	no	N/A	0.490	0.015	0.365	0.0002
Q98892	337	Opioid-binding protein/ce	yes	N/A	0.537	0.169	0.396	0.0002

>sp|Q95YM9|FGFR_HALRO Fibroblast growth factor receptor OS=Halocynthia roretzi GN=FGFR PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           +PQV+WYK  L +   +R +   + R   L++  V+ +D GNY CVA N  G      +L
Sbjct: 105 KPQVLWYKNDLIVQKNDR-VGGYKYRNQVLILESVVLSDKGNYMCVARNEYGSINHTYQL 163

Query: 97  SGKYPNAQEP 106
             +  +A +P
Sbjct: 164 DVQERSASKP 173

Receptor for basic fibroblast growth factor.
Halocynthia roretzi (taxid: 7729)
EC: 2EC: .EC: 7EC: .EC: 1EC: 0EC: .EC: 1

>sp|Q15746|MYLK_HUMAN Myosin light chain kinase, smooth muscle OS=Homo sapiens GN=MYLK PE=1 SV=4

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 36/65 (55%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P+VIW     ++  +E    E RG +H+L I++V   D G Y+C A NS G+ R    L+
Sbjct: 652 PEVIWLHNGNEIQESEDFHFEQRGTQHSLCIQEVFPEDTGTYTCEAWNSAGEVRTQAVLT 711

Query: 98  GKYPN 102
            + P+
Sbjct: 712 VQEPH 716

Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Responsible for high proliferative ability of breast cancer cells through anti-apoptosis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 37   RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            +P V WYK++++L  + R   +  G  ++LV+R V   D G Y+C+A+N+ G+     EL
Sbjct: 6385 QPSVTWYKDSVQLVDSTRLSQQQEGTTYSLVLRHVASKDAGVYTCLAQNTGGQVLCKAEL 6444

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Isoform 3 together with ANK1 isoform Mu17/Ank1.5 may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 42  WYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           W+KE  +L T  +   +E +GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct: 256 WFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYG 313

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

>sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 42  WYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           W+KE  +L T  +   +E +GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct: 256 WFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYG 313

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 38   PQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P + W K+   ++T +  + +++ GR   L I K L  D G Y+CVA N+ G+T+Q+++L
Sbjct: 1856 PSITWLKDDQPVNTAQGNLKIQSSGR--VLQIAKTLLEDAGRYTCVATNAAGETQQHIQL 1913

Query: 97   SGKYPNAQE 105
                P + E
Sbjct: 1914 HVHEPPSLE 1922

Homo sapiens (taxid: 9606)

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 38   PQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P+V W+K+ + +    + ++E +G    HTLVI+     DFG Y+C A N  GK     E
Sbjct: 3609 PEVKWFKDGVPIAIDNQHVIEKKGENGSHTLVIKDTNNADFGKYTCQATNKAGKDETVGE 3668

Query: 96   L 96
            L
Sbjct: 3669 L 3669

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|P32736|OPCM_RAT Opioid-binding protein/cell adhesion molecule OS=Rattus norvegicus GN=Opcml PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 42  WYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           W+KE  +L T    + +E +GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct: 256 WFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYG 313

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Rattus norvegicus (taxid: 10116)

>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein kinase OS=Homo sapiens GN=SPEG PE=1 SV=4

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           PQV W+K+   L +  R ++   G RHTL++R+    D G+Y   A N +G+
Sbjct: 751 PQVSWHKDGSALRSEGRLLLRAEGERHTLLLREARAADAGSYMATATNELGQ 802

Isoform 3 may have a role in regulating the growth and differentiation of arterial smooth muscle cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 42  WYKETLKL-DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           W+KE  +L +  E   +E++GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct: 248 WFKEDTRLANGLEGVRIESKGRLSTLTFFNVSEKDYGNYTCVATNKLGNTNASIILYG 305

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
108743667	413	IP03330p [Drosophila melanogaster]	0.839	0.215	0.576	6e-22
92109994	518	IP03437p [Drosophila melanogaster]	0.839	0.171	0.576	9e-22
161078695	566	CG34353, isoform A [Drosophila melanogas	0.839	0.157	0.576	1e-21
115646189	244	IP03328p [Drosophila melanogaster]	0.820	0.356	0.573	3e-21
390177133	443	GA30119 [Drosophila pseudoobscura pseudo	0.641	0.153	0.671	2e-20
242021179	454	limbic system-associated membrane protei	0.584	0.136	0.730	3e-20
242018223	500	limbic system-associated membrane protei	0.584	0.124	0.730	8e-20
91079206	551	PREDICTED: similar to CG34353 CG34353-PA	0.613	0.117	0.651	9e-20
328701975	551	PREDICTED: neural cell adhesion molecule	0.594	0.114	0.687	8e-19
328701973	535	PREDICTED: neural cell adhesion molecule	0.594	0.117	0.687	1e-18

>gi|108743667|gb|ABG02142.1| IP03330p [Drosophila melanogaster]

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 3/92 (3%)

Query: 12  TTERRII-ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
           + ER ++    G   TL+   H    +P+VIW+K+T++LDTTER IMETRG RHTL+IRK
Sbjct: 110 SVERPVVFSGEGHEATLVCIVH-GETQPEVIWFKDTMQLDTTERHIMETRGSRHTLIIRK 168

Query: 71  VLFTDFGNYSCVAENSMGKTRQYLELSGKYPN 102
           V   DFGNYSCVAEN +GK R+ L+LSGK PN
Sbjct: 169 VHPQDFGNYSCVAENQLGKARKTLQLSGK-PN 199

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|92109994|gb|ABE73321.1| IP03437p [Drosophila melanogaster]

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 3/92 (3%)

Query: 12  TTERRII-ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
           + ER ++    G   TL+   H    +P+VIW+K+T++LDTTER IMETRG RHTL+IRK
Sbjct: 228 SVERPVVFSGEGHEATLVCIVH-GETQPEVIWFKDTMQLDTTERHIMETRGSRHTLIIRK 286

Query: 71  VLFTDFGNYSCVAENSMGKTRQYLELSGKYPN 102
           V   DFGNYSCVAEN +GK R+ L+LSGK PN
Sbjct: 287 VHPQDFGNYSCVAENQLGKARKTLQLSGK-PN 317

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078695|ref|NP_001097949.1| CG34353, isoform A [Drosophila melanogaster] gi|386766647|ref|NP_001247342.1| CG34353, isoform B [Drosophila melanogaster] gi|158030420|gb|ABW08787.1| CG34353, isoform A [Drosophila melanogaster] gi|383292993|gb|AFH06659.1| CG34353, isoform B [Drosophila melanogaster]

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 3/92 (3%)

Query: 12  TTERRII-ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
           + ER ++    G   TL+   H    +P+VIW+K+T++LDTTER IMETRG RHTL+IRK
Sbjct: 276 SVERPVVFSGEGHEATLVCIVH-GETQPEVIWFKDTMQLDTTERHIMETRGSRHTLIIRK 334

Query: 71  VLFTDFGNYSCVAENSMGKTRQYLELSGKYPN 102
           V   DFGNYSCVAEN +GK R+ L+LSGK PN
Sbjct: 335 VHPQDFGNYSCVAENQLGKARKTLQLSGK-PN 365

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115646189|gb|ABJ16969.1| IP03328p [Drosophila melanogaster]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%), Gaps = 2/89 (2%)

Query: 12  TTERRII-ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
           + ER ++    G   TL+   H    +P+VIW+K+T++LDTTER IMETRG RHTL+IRK
Sbjct: 110 SVERPVVFSGEGHEATLVCIVH-GETQPEVIWFKDTMQLDTTERHIMETRGSRHTLIIRK 168

Query: 71  VLFTDFGNYSCVAENSMGKTRQYLELSGK 99
           V   DFGNYSCVAEN +GK R+ L+LSGK
Sbjct: 169 VHPQDFGNYSCVAENQLGKARKTLQLSGK 197

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390177133|ref|XP_003736282.1| GA30119 [Drosophila pseudoobscura pseudoobscura] gi|388858917|gb|EIM52355.1| GA30119 [Drosophila pseudoobscura pseudoobscura]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 59/73 (80%), Gaps = 5/73 (6%)

Query: 30  FFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           FF++     QVIW+K+T++LDTTER IMETRG RHTL+IRKV   DFGNYSCVAEN +GK
Sbjct: 225 FFNYL----QVIWFKDTMQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGK 280

Query: 90  TRQYLELSGKYPN 102
            R+ L+LSGK PN
Sbjct: 281 ARKTLQLSGK-PN 292

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 40  VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
           V+WY++TL+LDTTERR  ETRG RHTL+IRKV  +DFGNYSCVA+N++GK RQYL+LSGK
Sbjct: 238 VLWYRDTLRLDTTERRSFETRGSRHTLIIRKVQASDFGNYSCVADNTLGKMRQYLQLSGK 297

Query: 100 YPN 102
            PN
Sbjct: 298 -PN 299

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 55/63 (87%), Gaps = 1/63 (1%)

Query: 40  VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
           V+WY++TL+LDTTERR ME RG RHTL+IRKV  +DFGNYSCVA+N +GK RQYL+LSGK
Sbjct: 253 VLWYRDTLRLDTTERRSMEVRGSRHTLIIRKVQASDFGNYSCVADNPLGKMRQYLQLSGK 312

Query: 100 YPN 102
            PN
Sbjct: 313 -PN 314

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079206|ref|XP_969693.1| PREDICTED: similar to CG34353 CG34353-PA [Tribolium castaneum]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/66 (65%), Positives = 60/66 (90%), Gaps = 1/66 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           +P+V+WY++T++LDTTERRIME+RG RHTL+IRKV  +DFGNY+CVA+N +GKTR+ ++L
Sbjct: 302 QPEVLWYRDTMQLDTTERRIMESRGSRHTLLIRKVHRSDFGNYTCVADNQLGKTRKSVQL 361

Query: 97  SGKYPN 102
           +GK PN
Sbjct: 362 TGK-PN 366

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701975|ref|XP_003241763.1| PREDICTED: neural cell adhesion molecule 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%), Gaps = 1/64 (1%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           +V WY++TLKLDT ERRI E RG RHTL++RKV  +DFGNYSCVA+N +GK+R Y+ELSG
Sbjct: 292 EVSWYRDTLKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSG 351

Query: 99  KYPN 102
           K PN
Sbjct: 352 K-PN 354

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701973|ref|XP_001945384.2| PREDICTED: neural cell adhesion molecule 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%), Gaps = 1/64 (1%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           +V WY++TLKLDT ERRI E RG RHTL++RKV  +DFGNYSCVA+N +GK+R Y+ELSG
Sbjct: 292 EVSWYRDTLKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSG 351

Query: 99  KYPN 102
           K PN
Sbjct: 352 K-PN 354

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.613	0.119	0.545	8.2e-15
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.575	0.130	0.491	4.2e-13
UNIPROTKB|Q14982	345	OPCML "Opioid-binding protein/	0.537	0.165	0.396	1.6e-05
RGD|620635	345	Opcml "opioid binding protein/	0.537	0.165	0.396	3.3e-05
UNIPROTKB|Q98892	337	OPCML "Opioid-binding protein/	0.537	0.169	0.396	5.3e-05
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.622	0.011	0.362	0.00014
MGI|MGI:1261760	341	Lsamp "limbic system-associate	0.632	0.196	0.328	0.00015
UNIPROTKB|P11834	345	OPCML "Opioid-binding protein/	0.537	0.165	0.379	0.00019
UNIPROTKB|H0Y411	2583	OBSCN "Obscurin" [Homo sapiens	0.566	0.023	0.35	0.00019
UNIPROTKB|Q6UXZ0	262	TMIGD1 "Transmembrane and immu	0.471	0.190	0.388	0.00021

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 36/66 (54%), Positives = 49/66 (74%)

Query:    40 VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
             V WY+ +  + +T+RRIM TR  RH L IR +   DFGNYSCVA+NS+G++R+Y+ELSG+
Sbjct:   319 VSWYQNSFPIQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELSGR 378

Query:   100 YPNAQE 105
              P A E
Sbjct:   379 -PGAAE 383

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 30/61 (49%), Positives = 48/61 (78%)

Query:    39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
             +++WY+ +  LD T+RR M  R  R++L+IR    TDFGNYSCVA+N++G+T++Y+E+SG
Sbjct:   255 EMLWYQNSFLLDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADNALGRTKKYIEVSG 314

Query:    99 K 99
             +
Sbjct:   315 R 315

GO:0005576 "extracellular region" evidence=ISS

UNIPROTKB|Q14982 OPCML "Opioid-binding protein/cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query:    42 WYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
             W+KE  +L T  +   +E +GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct:   256 WFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYG 313

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0004985 "opioid receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0008038 "neuron recognition" evidence=TAS

GO:0038003 "opioid receptor signaling pathway" evidence=TAS

RGD|620635 Opcml "opioid binding protein/cell adhesion molecule-like" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query:    42 WYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
             W+KE  +L T    + +E +GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct:   256 WFKEDTRLATGLDGVRIENKGRISTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYG 313

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|Q98892 OPCML "Opioid-binding protein/cell adhesion molecule homolog" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query:    42 WYKETLKL-DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
             W+KE  +L +  E   +E++GR  TL    V   D+GNY+CVA N +G T   + L G
Sbjct:   248 WFKEDTRLANGLEGVRIESKGRLSTLTFFNVSEKDYGNYTCVATNKLGNTNASIILYG 305

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 113 (44.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query:    38 PQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             P + W K+   ++T +  + +++ GR   L I K L  D G Y+CVA N+ G+TRQ+L+L
Sbjct:  1858 PSITWLKDGQPVNTAQGNLKIQSSGR--VLQIAKALMEDAGRYTCVATNAAGETRQHLQL 1915

Query:    97 SGKYPNAQE 105
                 P + E
Sbjct:  1916 HVHEPPSLE 1924

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query:    38 PQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             P   WY++  ++++     I  T G+  +L +  V    +GNY+CVA N +G T   L L
Sbjct:   247 PDFEWYRDDTRINSANGLEIKSTEGQS-SLTVTNVTEEHYGNYTCVAANKLGVTNASLVL 305

Query:    97 SGKYPNAQEP 106
               KY    EP
Sbjct:   306 FSKYAKT-EP 314

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|P11834 OPCML "Opioid-binding protein/cell adhesion molecule" [Bos taurus (taxid:9913)]

 Score = 98 (39.6 bits), Expect = 0.00019, P = 0.00019
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query:    42 WYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
             W+KE  +L T  +   +E +G   TL    V   D+GNY+CVA N +G T   + L G
Sbjct:   256 WFKEDTRLATGLDGMRIENKGHISTLTFFNVSEKDYGNYTCVATNKLGITNASITLYG 313

GO:0005886 "plasma membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|H0Y411 OBSCN "Obscurin" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query:    37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             +P V WYK++++L  + R   +  G  ++LV+R V   D G Y+C+A+N+ G+     EL
Sbjct:  1002 QPSVTWYKDSVQLVDSTRLSQQQEGTTYSLVLRHVASKDAGVYTCLAQNTGGQVLCKAEL 1061

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q6UXZ0 TMIGD1 "Transmembrane and immunoglobulin domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 81 (33.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query:    39 QVIWYKET--LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
             Q++WYK +  L L+ +  +I +T      L I KV   D G YSC+A++S+ KT
Sbjct:   152 QMMWYKNSSLLDLEKSRHQIQQT-SESFQLSITKVEKPDNGTYSCIAKSSL-KT 203

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-09
smart00409	85	smart00409, IG, Immunoglobulin	3e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-08
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-07
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	7e-07
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	1e-05
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	2e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-05
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	9e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	3e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	4e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	5e-04
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	7e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	8e-04
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.001
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.001
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	0.001
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.002
cd04974	90	cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like	0.002

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 49.4 bits (118), Expect = 3e-09
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 38 PQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
          P+V WYK+  KL     R   +R G   TL I  V   D G Y+C A NS G       L
Sbjct: 24 PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Query: 97 S 97
          +
Sbjct: 84 T 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 49.4 bits (118), Expect = 3e-09
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 38 PQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
          P+V WYK+  KL     R   +R G   TL I  V   D G Y+C A NS G       L
Sbjct: 24 PEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTL 83

Query: 97 S 97
          +
Sbjct: 84 T 84

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 49.2 bits (118), Expect = 3e-09
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
          P V W+K+   L +++R  +   G  +TL I  V   D G Y+CVA NS G+
Sbjct: 30 PTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGE 81

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.1 bits (107), Expect = 8e-08
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
          P + W K+   L     R + +     TL I+ V   D G Y+CVAENS G
Sbjct: 17 PNITWLKDGKPLPE-SNRFVASGS---TLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.9 bits (104), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
          P V+W KE  +L      I++      +L IR V   D G+Y+C AEN +GK 
Sbjct: 13 PTVLWRKEDGELPKGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMVGKI 61

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 43.2 bits (101), Expect = 6e-07
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 38 PQVIWYKE----TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
          P + W K        + T  R    T     TL I  V   D G Y+CVA NS G     
Sbjct: 13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSAS 72

Query: 94 LE 95
          + 
Sbjct: 73 VT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 43.0 bits (102), Expect = 7e-07
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
          P V W K+   L  + R  +ET     +LVI+    +D G Y+   +N  G+
Sbjct: 14 PTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE 65

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 38 PQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          P++ W+K+ L +DTT   RI + R     L I     +D G Y CVA NS G TR
Sbjct: 13 PEITWFKDFLPVDTTSNGRIKQLRS--GALQIENSEESDQGKYECVATNSAG-TR 64

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          P++ W K   +L   +R   E   +  TL I  V   D G Y C A NS+G  R
Sbjct: 13 PEISWIKIGGEL-PADRTKFENFNK--TLKIDNVSEEDDGEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 39.3 bits (91), Expect = 2e-05
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV 71
          T       T G   TL          P + WY+       +            TL +  V
Sbjct: 5  TVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSG----STLTLSSV 60

Query: 72 LFTDFGNYSCVAEN 85
             D G Y+CVA N
Sbjct: 61 TSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
          P V W K+   L LD    RI++       L+I +   +D G Y CVA N +G
Sbjct: 27 PTVSWRKDGQPLNLDNERVRIVDD----GNLLIAEARKSDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
          P V W +E   + +++R  + +   + T  I KV  +D GNY+ V ENS GK      L+
Sbjct: 33 PTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT 92

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 37.4 bits (87), Expect = 9e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 34 AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
          A+  P++ WYK    +    R    T+   H+L I+ V   D GNY+ V  N   K  + 
Sbjct: 9  AYPPPEIQWYKNGKLISEKNR----TKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKR 64

Query: 94 LELS 97
          L  +
Sbjct: 65 LTFT 68

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 38 PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
          P + W K   K    E RI   + R +  +L++  V+ +D GNY+CV EN  G       
Sbjct: 24 PTMRWLKNG-KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82

Query: 96 L 96
          L
Sbjct: 83 L 83

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 34 AFCRPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
          A  +P + W K T  L  + R  I        +L I  V  +D G Y+C AEN  GK
Sbjct: 12 AAPKPTISWSKGTELLTNSSRICIWPDG----SLEILNVTKSDEGKYTCFAENFFGK 64

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 35.8 bits (83), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
          RP + W K+        R    + R ++ TL++  V+ +D G Y+C+ EN  G
Sbjct: 23 RPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          P++ W K  + +     + +        L I  V + D G Y+C+A+N  G   
Sbjct: 13 PRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 35.7 bits (82), Expect = 7e-04
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 38 PQVIWYKETLKLDTTE-----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
          P + W   T  + + E       ++ +  R  +L ++ + +TD G Y C A N++G+  Q
Sbjct: 32 PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91

Query: 93 --YLEL 96
            YLE+
Sbjct: 92 SMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 38 PQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMG 88
          P+V W K    L  ++   ++   G+  +L I+ V   D G Y  V +N  G
Sbjct: 31 PEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
          RP   W K    L  +E RI    G    L I K+  +D G Y CVAEN  G      EL
Sbjct: 28 RPAYRWLKNGQPL-ASENRIEVEAG---DLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P + W K+ +++  + +  +   G    L IR V   D G Y CVA N++G     + L
Sbjct: 12 EPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68

Query: 97 S 97
          S
Sbjct: 69 S 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 27 LIFFFHFAFCRPQVIWYKET-LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE- 84
           +  F      P V WYK+  L     +R +  ++     L+I+ V   D GNY+C    
Sbjct: 19 DLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSK-----LLIQNVTEEDAGNYTCKLTF 73

Query: 85 NSMGKTR 91
             GK  
Sbjct: 74 THNGKQY 80

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 38 PQVIWYKETLKLDTTERRI---METRG--RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
          P++ W + T      ++ +   +  RG  R  +L ++ V  TD G Y C A N +G  +Q
Sbjct: 31 PEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQ 90

Query: 93 --YLEL 96
            YLE+
Sbjct: 91 SMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143175 cd04974, Ig3_FGFR, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 56 IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
          I  T      L +R V F D G Y+C+A NS+G +     L+
Sbjct: 47 INTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLT 88

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.88
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.84
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.82
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.81
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.81
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.81
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.77
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.77
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.77
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.76
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.76
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.76
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.75
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.75
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.74
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.73
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.73
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.73
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.72
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.72
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.72
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.72
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.71
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.71
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.71
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.71
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.71
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.71
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.7
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.7
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.69
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.69
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.69
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.69
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.68
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.68
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.68
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.68
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.68
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.67
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.67
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.67
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.67
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.66
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.66
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.66
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.66
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.65
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.65
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.65
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.65
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.64
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.64
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.63
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.63
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.63
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.61
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.61
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.61
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.6
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.59
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.59
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.59
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.58
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.57
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.57
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.57
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.56
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.56
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.55
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.55
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.54
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.54
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.52
KOG3513|consensus	1051		99.52
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.51
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.51
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.51
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.48
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.47
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.47
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.46
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.43
smart00409	86	IG Immunoglobulin.	99.43
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.43
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.42
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.42
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.37
KOG4194|consensus	873		99.37
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.35
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.34
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.32
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.3
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.29
KOG3513|consensus	1051		99.29
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.29
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.25
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.24
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.24
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.22
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.21
KOG4221|consensus	1381		99.18
PHA02826	227	IL-1 receptor-like protein; Provisional	99.18
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.14
PHA02785	326	IL-beta-binding protein; Provisional	99.11
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.1
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.08
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.06
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	99.02
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.0
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.95
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.95
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.94
PHA02826	227	IL-1 receptor-like protein; Provisional	98.91
PHA02785	326	IL-beta-binding protein; Provisional	98.89
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.89
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.89
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.86
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.84
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.84
KOG4221|consensus	1381		98.81
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.81
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.8
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.79
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.79
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.78
KOG4222|consensus	1281		98.77
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.76
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.69
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.68
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.66
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.65
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.64
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.63
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.63
KOG4222|consensus	1281		98.62
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.61
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.6
KOG4194|consensus	873		98.59
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.58
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.58
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.56
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.52
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.5
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.48
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.47
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.46
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.45
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.45
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.43
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.43
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.42
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.4
PHA03376	221	BARF1; Provisional	98.4
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.39
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.37
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.35
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.34
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.3
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.25
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.22
smart00406	81	IGv Immunoglobulin V-Type.	98.11
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.1
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.92
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.88
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.84
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.77
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.68
smart00407	75	IGc1 Immunoglobulin C-Type.	97.67
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.62
PHA02633	63	hypothetical protein; Provisional	97.6
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.56
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.56
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.4
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.39
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.33
KOG3515|consensus	741		97.25
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.07
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.91
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.66
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.59
KOG1480|consensus	909		96.52
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.43
PHA02982	251	hypothetical protein; Provisional	96.41
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.33
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.22
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.13
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.08
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.84
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.46
PHA03042	286	CD47-like protein; Provisional	94.54
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.42
KOG4597|consensus	560		93.29
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	92.63
KOG3515|consensus	741		92.3
PHA02865	338	MHC-like TNF binding protein; Provisional	89.1
PHA03052	69	Hypothetical protein; Provisional	87.49
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	84.73
PHA03376	221	BARF1; Provisional	83.48

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.88  E-value=1.2e-20  Score=93.37  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....++..........|.|..+...|.|.|.|.+.|..
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G-~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~   79 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTG-TQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKL   79 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcc-cCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCC
Confidence            34566677788999999999999999 99999999999999987767766665556789999999999999999999999


Q ss_pred             CcceEEEEEEEeCCC
Q psy17205         88 GKTRQYLELSGKYPN  102 (106)
Q Consensus        88 ~~~~~~~~l~~~~~~  102 (106)
                      |...+.+.|.+...|
T Consensus        80 G~~~~~~~l~V~~~P   94 (98)
T cd05762          80 GSRQAQVNLTVVDKP   94 (98)
T ss_pred             CceeEEEEEEEecCC
Confidence            999988877754443

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.84  E-value=8.7e-19  Score=85.92  Aligned_cols=89  Identities=26%  Similarity=0.349  Sum_probs=76.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDG-EPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEee-cCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            456666777888999999999999999 9999999999998887666666655445668999999999999999999999


Q ss_pred             CCcceEEEEE
Q psy17205         87 MGKTRQYLEL   96 (106)
Q Consensus        87 ~~~~~~~~~l   96 (106)
                      .|.....+.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998877765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.82  E-value=5.8e-18  Score=82.63  Aligned_cols=89  Identities=28%  Similarity=0.430  Sum_probs=79.3

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.|...+..+.+..|+++.|.|.+.+ .|.+.+.|++++..+....++..........|.|.++...|.|.|.|.+.|..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   79 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSG-NPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS   79 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEE-SSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEe-CCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence            46667778899999999999999999 89999999999999988878877776778899999999999999999999998


Q ss_pred             CcceEEEEEE
Q psy17205         88 GKTRQYLELS   97 (106)
Q Consensus        88 ~~~~~~~~l~   97 (106)
                      |.....+.|.
T Consensus        80 g~~~~~~~l~   89 (90)
T PF07679_consen   80 GEATASVNLT   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            8888877665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.81  E-value=6.9e-18  Score=82.71  Aligned_cols=83  Identities=22%  Similarity=0.292  Sum_probs=70.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +..+.+..|+.+.|.|...| .|.|.+.|++++..+....++.+... +....|.|.++...|.|.|.|.+.|..|....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFG-DPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEe-cCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            44577889999999999999 99999999999998877666655433 33457999999999999999999999999888


Q ss_pred             EEEEE
Q psy17205         93 YLELS   97 (106)
Q Consensus        93 ~~~l~   97 (106)
                      .+.|.
T Consensus        87 ~~~v~   91 (92)
T cd05737          87 DVTVS   91 (92)
T ss_pred             EEEEe
Confidence            77764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.81  E-value=2.1e-18  Score=83.85  Aligned_cols=86  Identities=23%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.+........+..|+.+.|.|.+.| .|.|.+.|++++..+....++...    ...|.|.++...|.|.|.|.+.|..
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G-~P~P~v~W~k~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALG-NPVPVIRWRKILEPMPATAEISMS----GAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecc-cCCCEEEEEECCcCCCCCCEEecC----CCEEEECcCChhhCEEEEEEEEcCC
Confidence            55666677788889999999999999 999999999998776654333221    2369999999999999999999999


Q ss_pred             CcceEEEEEEE
Q psy17205         88 GKTRQYLELSG   98 (106)
Q Consensus        88 ~~~~~~~~l~~   98 (106)
                      |.......|.+
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99887776653

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.81  E-value=1.5e-17  Score=80.51  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=69.3

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.| .|.|.+.|++++..+... .++..........|.|..+...|.|.|.|.+.|..|.....+
T Consensus         4 ~~~v~~G~~v~l~c~~~G-~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISG-EPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEee-cCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            567889999999999999 999999999999888653 355555544566899999999999999999999999988877


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05894          83 FVK   85 (86)
T ss_pred             EEE
Confidence            764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.77  E-value=1.7e-17  Score=77.98  Aligned_cols=72  Identities=31%  Similarity=0.339  Sum_probs=61.5

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++..+....++.+...+   .|.|.++...|.|.|.|.+.|..|.......|.
T Consensus         1 G~~~~l~C~~~g-~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKA-APKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecce-eCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            678999999999 999999999999877766666554433   799999999999999999999999988877664

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.77  E-value=1.5e-17  Score=78.46  Aligned_cols=73  Identities=26%  Similarity=0.455  Sum_probs=61.2

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +|+.+.|.|.+.| .|.|.+.|++++..+....+......   ..|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus         1 eG~~v~l~C~~~g-~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQG-YPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCE-ecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            4789999999999 99999999999988876544433332   2799999999999999999999999988776664

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.77  E-value=1.8e-16  Score=77.39  Aligned_cols=84  Identities=18%  Similarity=0.188  Sum_probs=67.3

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .+....+..|+.+.|.|.+.| .|.|.+.|++++..+................|.|.++...|.|.|.|.+.|..|....
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G-~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEG-SPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEE-cCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            344566889999999999999 9999999999998776543332333333557999999999999999999999999887


Q ss_pred             EEEEE
Q psy17205         93 YLELS   97 (106)
Q Consensus        93 ~~~l~   97 (106)
                      .+.|.
T Consensus        85 ~~~L~   89 (90)
T cd04972          85 SVQVT   89 (90)
T ss_pred             EEEEe
Confidence            76664

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.76  E-value=2.5e-16  Score=76.53  Aligned_cols=81  Identities=27%  Similarity=0.311  Sum_probs=65.2

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEE----cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMET----RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      |+.+.|.|.+.+ .|.+.+.|++++..+... .++.+..    ......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g-~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHG-EKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEEC-CCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            678999999999 999999999999877643 3443332    1223579999999999999999999999999998888


Q ss_pred             EEeCCCC
Q psy17205         97 SGKYPNA  103 (106)
Q Consensus        97 ~~~~~~~  103 (106)
                      .+..+|.
T Consensus        80 ~V~~~P~   86 (88)
T cd05735          80 TVQEPPD   86 (88)
T ss_pred             EEeCCCC
Confidence            8666543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.76  E-value=5.6e-17  Score=78.40  Aligned_cols=81  Identities=27%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      ..+....+..|+.+.|.|.+.| .|.|.+.|++++..+....++....    ..|.+.++...|.|.|.|.+.|..|...
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g-~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASG-NPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeE-eCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            3455677889999999999999 9999999999999887655554332    2699999999999999999999999888


Q ss_pred             EEEEEE
Q psy17205         92 QYLELS   97 (106)
Q Consensus        92 ~~~~l~   97 (106)
                      +.+.|.
T Consensus        79 ~~~~l~   84 (85)
T cd05728          79 ASAELA   84 (85)
T ss_pred             EEEEEE
Confidence            776664

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.76  E-value=1.4e-16  Score=75.16  Aligned_cols=72  Identities=24%  Similarity=0.307  Sum_probs=61.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+....+...........|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus         2 ~~l~c~~~G-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748           2 VRLEVPISG-RPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             EEEEeeEee-eCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            678999999 999999999999988666666665555567899999999999999999999999988877664

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.75  E-value=2.8e-16  Score=76.97  Aligned_cols=84  Identities=23%  Similarity=0.334  Sum_probs=69.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .+..+.+..|+.+.|.|...+ .|.|.+.|++++..+....++..... .....|.|..+...|.|.|.|.+.|.+|...
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g-~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFG-NPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEE-eCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence            355678889999999999999 99999999999988876655544332 2234799999999999999999999999999


Q ss_pred             EEEEEE
Q psy17205         92 QYLELS   97 (106)
Q Consensus        92 ~~~~l~   97 (106)
                      ..+.|.
T Consensus        86 ~~~~v~   91 (92)
T cd05891          86 VDVTVS   91 (92)
T ss_pred             eEEEEE
Confidence            887765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.75  E-value=3.8e-16  Score=77.22  Aligned_cols=89  Identities=22%  Similarity=0.350  Sum_probs=66.7

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      |.+...+.......|+.+.|.|.+.| .|.|.+.|++++..+....     ++..........|.|.++...|.|.|.|.
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G-~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASG-DPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeE-eCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            45554444455556899999999999 9999999999886654321     22222223345799999999999999999


Q ss_pred             EEcCCCcceEEEEEE
Q psy17205         83 AENSMGKTRQYLELS   97 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~   97 (106)
                      +.|..|.....+.|.
T Consensus        82 A~N~~G~~~~~~~l~   96 (97)
T cd05869          82 ASNTIGQDSQSMYLE   96 (97)
T ss_pred             EecCCCCeeEEEEEE
Confidence            999999988877664

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.74  E-value=3e-16  Score=76.32  Aligned_cols=84  Identities=24%  Similarity=0.268  Sum_probs=66.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....... .   ....|.|.++...|.|.|.|.+.|..|
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g-~P~p~v~W~k~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALG-NPVPQIKWRKVDGSMPSSAEIS-M---SGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeE-eCCCEEEEEECCCcCCCccEEE-E---eCCEEEECCCCcccCEEEEEEEEECCC
Confidence            3445566677889999999999999 9999999999876554432222 1   123799999999999999999999999


Q ss_pred             cceEEEEEE
Q psy17205         89 KTRQYLELS   97 (106)
Q Consensus        89 ~~~~~~~l~   97 (106)
                      .......|.
T Consensus        78 ~~~~~~~l~   86 (88)
T cd04968          78 KDTHQGRIY   86 (88)
T ss_pred             cEEEEEEEE
Confidence            887766665

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.73  E-value=4.5e-16  Score=76.68  Aligned_cols=81  Identities=22%  Similarity=0.301  Sum_probs=65.9

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.| .|.|.+.|++++..+... .++...  .....|.|.++...|.|.|.|.+.|..|.....+
T Consensus        12 ~~~~~~G~~v~L~C~~~g-~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   88 (95)
T cd05730          12 NATANLGQSVTLACDADG-FPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI   88 (95)
T ss_pred             ceEEeCCCCEEEEEeccE-eCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            456789999999999999 999999999999888664 233222  2234699999999999999999999999988877


Q ss_pred             EEEEe
Q psy17205         95 ELSGK   99 (106)
Q Consensus        95 ~l~~~   99 (106)
                      .|.+.
T Consensus        89 ~L~V~   93 (95)
T cd05730          89 HLKVF   93 (95)
T ss_pred             EEEEE
Confidence            77643

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.73  E-value=2.7e-16  Score=74.16  Aligned_cols=72  Identities=24%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+.. ..++.+... ....+|.|.++...|.|.|.|.+.|..|.......|.
T Consensus         1 v~l~C~v~G-~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISA-IPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEe-cCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            468999999 99999999999988874 345555432 2334799999999999999999999999888776654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.73  E-value=2.7e-16  Score=73.98  Aligned_cols=72  Identities=31%  Similarity=0.367  Sum_probs=61.1

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++..+....+......+   .|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKA-APKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeE-cCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            678999999999 999999999999888766565543333   699999999999999999999999988877664

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.72  E-value=6.6e-16  Score=76.74  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=66.3

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc------CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR------GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ...+..|+.+.|.|...| .|.|.+.|++++..+....+......      .....|.|.++...|.|.|.|.+.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g-~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEA-YPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEE-eCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            566778999999999999 99999999999999876543322111      11347999999999999999999999998


Q ss_pred             ceEEEEEEE
Q psy17205         90 TRQYLELSG   98 (106)
Q Consensus        90 ~~~~~~l~~   98 (106)
                      ....+.|.+
T Consensus        91 ~~~t~~l~V   99 (101)
T cd05859          91 KSYTFALQI   99 (101)
T ss_pred             EEEEEEEEE
Confidence            887777664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.72  E-value=4.3e-16  Score=74.17  Aligned_cols=71  Identities=24%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.|.++...|.|.|.|.+.|..|...+.
T Consensus         1 G~~v~l~C~~~g-~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATG-VPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEE-ecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            678999999999 99999999999888776656655554455689999999999999999999998876653

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.72  E-value=6e-16  Score=72.42  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             eEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         24 RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        24 ~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      ++.|.|.+.| .|.|.+.|++++..+....++.....+   .+.+..+...|.|.|.|.+.|..|...+...|.
T Consensus         1 ~v~l~C~~~G-~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTG-KPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEE-eCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            3689999999 999999999999887766555544433   477789999999999999999999988776664

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.72  E-value=1.7e-15  Score=75.20  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=66.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-----CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-----GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..+.+..|+.+.|.|.+.+-.|.|.+.|++++..+...........     .....|.|..+...|.|.|.|.+.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4577889999999999987236789999999998875433322211     12457999999999999999999999998


Q ss_pred             ceEEEEEEE
Q psy17205         90 TRQYLELSG   98 (106)
Q Consensus        90 ~~~~~~l~~   98 (106)
                      ....+.|.+
T Consensus        91 ~~~t~~L~V   99 (101)
T cd04975          91 KSLTFELYV   99 (101)
T ss_pred             EEEEEEEEE
Confidence            888777764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.71  E-value=1.8e-15  Score=74.95  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcCC-----CCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLDT-----TERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~~-----~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      |.+.. ..++.+..|+.+.|.|.+.| .|.|.+.|++.  +..+..     ..++..........|.|.++...|.|.|.
T Consensus         3 p~i~~-~~~~~~~~G~~v~l~C~~~G-~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           3 PHIIQ-LKNETTVENGAATLSCKAEG-EPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CEEEe-eccEEEcCCCcEEEEEeccc-CCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            44543 45677889999999999999 99999999984  333321     12344433333457999999999999999


Q ss_pred             EEEEcCCCcceEEEEEE
Q psy17205         81 CVAENSMGKTRQYLELS   97 (106)
Q Consensus        81 C~~~~~~~~~~~~~~l~   97 (106)
                      |.+.|..|.....+.|.
T Consensus        81 C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          81 CEAASRIGGHQKSMYLD   97 (98)
T ss_pred             EEEeccCCcceeEEEEe
Confidence            99999999887766553

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.71  E-value=2.5e-16  Score=73.31  Aligned_cols=68  Identities=25%  Similarity=0.401  Sum_probs=56.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +.|.|.+.| .|.|.+.|++++..+....++.....+   .|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         1 v~L~C~~~g-~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQG-DPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceE-eCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            468999999 999999999999888765555443332   79999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.71  E-value=1.7e-15  Score=73.22  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=63.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      +.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+.. .........|.|..+...|.|.|.|.+.|..|.....+.
T Consensus         4 ~~v~~G~~~~L~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAG-NPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCC-CCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            45678999999999999 9999999999998887653321 111122446899999999999999999999999888776


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |.
T Consensus        83 l~   84 (85)
T cd05857          83 LD   84 (85)
T ss_pred             EE
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.71  E-value=2e-15  Score=74.47  Aligned_cols=88  Identities=23%  Similarity=0.322  Sum_probs=66.9

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      |.+. ...+..+..|+.+.|.|.+.+ .|.|.+.|++++..+....     ++..........|.|.++...|.|.|.|.
T Consensus         3 P~i~-~~~~~~~~~g~~v~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           3 PKIT-YLENQTAVELEQITLTCEAEG-DPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             ccce-ecCceeEecCCcEEEEEEEeE-cCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            3443 234567789999999999999 9999999999886554321     22222223345799999999999999999


Q ss_pred             EEcCCCcceEEEEEE
Q psy17205         83 AENSMGKTRQYLELS   97 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~   97 (106)
                      +.|..|.....+.|.
T Consensus        81 a~N~~G~~~~s~~l~   95 (96)
T cd05732          81 ASNRIGGDQQSMYLE   95 (96)
T ss_pred             EEeCCCCcEEEEEEe
Confidence            999999988776654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.71  E-value=2.8e-15  Score=73.25  Aligned_cols=83  Identities=20%  Similarity=0.316  Sum_probs=65.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+..+.+..|+.+.|.|.+.| .|. .+.|++ ++..+....++.....+....|.|..+..+|.|.|.|.+.|..|..
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G-~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIG-EPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEE-eCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            3445577889999999999999 887 899997 4666665566666555556689999999999999999999998886


Q ss_pred             e-EEEEE
Q psy17205         91 R-QYLEL   96 (106)
Q Consensus        91 ~-~~~~l   96 (106)
                      . +.+.|
T Consensus        83 ~~~~i~l   89 (92)
T cd05866          83 QEATVVL   89 (92)
T ss_pred             EEEEEEE
Confidence            4 34444

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.71  E-value=1.3e-15  Score=72.19  Aligned_cols=72  Identities=21%  Similarity=0.309  Sum_probs=58.5

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      |+.+.|.|.+.| .|.|.+.|++++..+....   +... .   ...|.|.+++..|.|.|.|.+.|..|.......|.+
T Consensus         1 G~~v~l~C~~~G-~P~p~i~W~k~g~~i~~~~~~~~~~~-~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEG-IPTPNITWSINGAPIEGTDPDPRRHV-S---SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeE-eCCCeEEEEECCEECCCCCCCceEEe-e---CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            678999999999 9999999999998876532   2222 1   236999999999999999999999998887766653

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.70  E-value=2.7e-15  Score=73.94  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCC-CeEEEee-CCEEcCC-CCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCC-
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCR-PQVIWYK-ETLKLDT-TERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSM-   87 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~-~~~~l~~-~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~-   87 (106)
                      .+....+..|+.+.|.|.+.| .|. |.+.|++ ++..+.. ..++.... ......|.|..+...|.|.|.|.+.|.. 
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G-~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAG-EAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeC-CCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            444556788999999999999 884 7999997 6765554 33443322 2224579999999999999999999997 


Q ss_pred             CcceEEEEEE
Q psy17205         88 GKTRQYLELS   97 (106)
Q Consensus        88 ~~~~~~~~l~   97 (106)
                      |...+.+.|.
T Consensus        85 g~~~~s~~l~   94 (96)
T cd05865          85 GESEATVNVK   94 (96)
T ss_pred             CcEEEEEEEE
Confidence            7777766654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.70  E-value=7e-16  Score=71.13  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=53.3

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+...        .....|.|.++...|.|.|.|.+.|..|.....+.+.
T Consensus         1 ~~l~c~v~g-~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863           1 VKLPVKVAA-YPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CEEEEEEEE-eCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            368999999 999999999999888632        1234799999999999999999999999777666554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.69  E-value=2.6e-15  Score=70.92  Aligned_cols=72  Identities=24%  Similarity=0.229  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+... .++.+... .....|.|.++...|.|.|.|.+.|..|.......|.
T Consensus         1 v~L~C~v~G-~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSA-IPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEee-cCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            368999999 999999999999888743 45544433 2344699999999999999999999999888776653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.69  E-value=1.3e-15  Score=72.10  Aligned_cols=75  Identities=19%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++..+........ .......|.|..+...|.|.|.|.+.|..|...+.+.|.+
T Consensus         1 G~~~~l~C~~~g-~P~p~i~W~~~g~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEG-IPQPTITWRLNGVPIEELPPDPR-RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEcee-eCCCEEEEEECCEECCCCCCcce-EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999 99999999999988765432211 1122347999999999999999999999998887776653

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.69  E-value=2.2e-15  Score=71.10  Aligned_cols=72  Identities=25%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcC-cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRG-RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+... .++.+.... ....|.|..+...|.|.|.|.+.|..|.......|.
T Consensus         1 v~l~C~v~G-~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSG-VPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeE-ecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            468999999 999999999999888653 455554332 234699999999999999999999999988766654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.69  E-value=2.3e-15  Score=71.82  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+.+..|+.+.|.|.+.+ . .+.+.|++++..+....++.+..    ..|.|..+...|+|.|.|.+.|..|.....+
T Consensus         2 ~~~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CcEEecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            3456779999999999988 5 57899999998887665554432    2699999999999999999999888877666


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .|.
T Consensus        76 ~v~   78 (79)
T cd04973          76 SVN   78 (79)
T ss_pred             EEe
Confidence            554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.68  E-value=7.3e-15  Score=72.80  Aligned_cols=89  Identities=26%  Similarity=0.335  Sum_probs=62.8

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-----CCEEEEEcCcEEEEEEc--ccCCCCCEee
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-----ERRIMETRGRRHTLVIR--KVLFTDFGNY   79 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-----~~~~~~~~~~~~~l~~~--~~~~~~~g~y   79 (106)
                      +|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+...     .+......+....+.+.  .+...|.|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEG-RPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCc-CCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            356667777888899999999999999 999999999999887652     11112222222222222  2357899999


Q ss_pred             EEEEEcCCCc-ceEEEEE
Q psy17205         80 SCVAENSMGK-TRQYLEL   96 (106)
Q Consensus        80 ~C~~~~~~~~-~~~~~~l   96 (106)
                      .|.+.|..|. ......|
T Consensus        80 ~C~a~N~~G~~~s~~~~l   97 (100)
T cd07693          80 VCVAHNSLGEAVSRNASL   97 (100)
T ss_pred             EEEEEccccceecceEEE
Confidence            9999999988 3334444

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.68  E-value=8.4e-15  Score=70.74  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             CeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         23 RRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        23 ~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +++.|.|.+.+ .|.|  .+.|++++..+....   ++. .........|.|.+++..|.|.|.|.+.|..|...+...|
T Consensus         1 ~~~~L~C~a~g-~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASH-DPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL   79 (85)
T ss_pred             CcEEEEEEEec-CCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence            46899999999 8887  579999998875421   221 2221234579999999999999999999999999988888


Q ss_pred             EEeCC
Q psy17205         97 SGKYP  101 (106)
Q Consensus        97 ~~~~~  101 (106)
                      .+..+
T Consensus        80 ~V~~~   84 (85)
T cd05854          80 VVRGP   84 (85)
T ss_pred             EEECC
Confidence            76644

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.68  E-value=1.4e-14  Score=71.73  Aligned_cols=88  Identities=24%  Similarity=0.342  Sum_probs=67.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCC--CCEEEEEc----CcEEEEEEcccCCCC-CEe
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTT--ERRIMETR----GRRHTLVIRKVLFTD-FGN   78 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~--~~~~~~~~----~~~~~l~~~~~~~~~-~g~   78 (106)
                      +|.+.. .....+..|+.+.|.|.+.| .|.| .+.|++++..+...  .++.+...    .....|.|..+...| .|.
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g-~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFS-TPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcc-cCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence            455543 44566789999999999999 9999 69999999887653  34544332    223479999999855 899


Q ss_pred             eEEEEEcCCCcceEEEEE
Q psy17205         79 YSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l   96 (106)
                      |.|.+.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999998877655

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.68  E-value=4.2e-15  Score=71.12  Aligned_cols=70  Identities=20%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             EEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-------cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         27 LIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-------RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        27 ~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.+.| .|.|.+.|++++..+....+.....       ......|.|.++...|.|.|.|.+.|..|...+.+.+.
T Consensus         3 i~~~v~G-~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRG-NPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEe-eCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            6789999 9999999999999887654432211       12244699999999999999999999999988877654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.68  E-value=3.2e-15  Score=70.79  Aligned_cols=74  Identities=19%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC-EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      |+.+.|.|.+.| .|.|.+.|++++..+..... ......  ...+.+..+...|.|.|.|.+.|..|...+...|.+
T Consensus         1 g~~~~l~C~a~G-~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANG-NPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeE-eCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678899999999 99999999999988754321 111111  126888999999999999999999999888766653

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.67  E-value=2e-15  Score=70.59  Aligned_cols=68  Identities=26%  Similarity=0.416  Sum_probs=55.7

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+....+...    ....|.|.++...|+|.|.|.+.|..|.....+.+.
T Consensus         1 ~~l~c~v~g-~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976           1 VRLPVKVKA-YPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CEEEeEEEE-eCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            368899999 99999999999998876543321    134799999999999999999999998877766655

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.67  E-value=3.6e-15  Score=69.32  Aligned_cols=68  Identities=24%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      |+.+.|.|.+.| .|.|.+.|++++..+....+...    ....|.|.++.  |.|.|.|.+.|..|.......|
T Consensus         1 G~~v~L~C~a~G-~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVG-APMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeee-cCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            678999999999 99999999999988765433221    12357888764  7899999999999987776654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.67  E-value=1.9e-15  Score=70.71  Aligned_cols=70  Identities=27%  Similarity=0.329  Sum_probs=55.1

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      +.|.|.+.| .|.|.+.|++++..+.... ....  .....|.|.++...|.|.|.|.+.|..|.....+.|.+
T Consensus         1 ~~L~C~~~G-~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEG-LPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeE-ecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            368999999 9999999999987665432 2111  12347999999999999999999999999888777653

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.67  E-value=4.9e-15  Score=69.82  Aligned_cols=72  Identities=26%  Similarity=0.424  Sum_probs=57.2

Q ss_pred             CCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      |+.+.|.|.+.+ .|.|.+.|++ ++..+....+......+   .|.|..+...|.|.|.|.+.|..|.....+.|.
T Consensus         1 G~~~~l~C~~~g-~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARG-DPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccC-cCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            678999999999 9999999997 56666554444333322   688999999999999999999999887776664

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.66  E-value=3.7e-14  Score=71.45  Aligned_cols=80  Identities=24%  Similarity=0.273  Sum_probs=62.3

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEc----CcEEEEEEcccC-CCCCEeeEEEEEcCCCcceEEE
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETR----GRRHTLVIRKVL-FTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~----~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .|..+.|.|.+.| .|.+.+.|++++..+... .++.....    .....|.|.++. ..|.|.|.|.+.|..|.....+
T Consensus        22 ~g~~v~L~C~a~G-~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQG-VPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECcc-cCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            5688999999999 999999999999888643 34332211    113468999987 5899999999999999998888


Q ss_pred             EEEEeCC
Q psy17205         95 ELSGKYP  101 (106)
Q Consensus        95 ~l~~~~~  101 (106)
                      .|.+..+
T Consensus       101 ~L~~~~~  107 (109)
T cd05773         101 QLVSTSR  107 (109)
T ss_pred             EEEecCC
Confidence            8875544

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.66  E-value=7.5e-15  Score=69.52  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=58.0

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      .|.|.+.| .|.|.+.|++++..+....+...........|.|.++...|.|.|.|.+.|..|.....+.|.+.
T Consensus         2 ~L~C~v~g-~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEG-IPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeee-cCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            68899999 99999999999988765433222222223469999999999999999999999998888777754

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.66  E-value=1.3e-14  Score=70.85  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .+.++.+..|+.+.|.|.+.+ . .|.+.|++++..+... +..+..  ....|.|.++...|.|.|.|.+.|..|...+
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g-~-~p~i~W~kng~~l~~~-~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEG-Q-ATYIWWVNNGSLLVPP-RLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             ccCccccccCCcEEEEEEeCC-C-CCEEEEEECCEECCCC-CEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            344678889999999999999 8 9999999999877654 332222  2337999999999999999999999987654


Q ss_pred             -EEEEE
Q psy17205         93 -YLELS   97 (106)
Q Consensus        93 -~~~l~   97 (106)
                       .+.|.
T Consensus        84 ~~~~L~   89 (91)
T cd05740          84 DPYILN   89 (91)
T ss_pred             eeEEEE
Confidence             44444

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.66  E-value=8.9e-15  Score=69.44  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=55.4

Q ss_pred             EEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE-----EcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         27 LIFFFHFAFCRPQVIWYKETLKLDTTERRIME-----TRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        27 ~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.+.| .|.|.+.|++++..|....+....     .......|.|..+...|.|.|.|.+.|..|.....+.+.
T Consensus         3 i~~~v~G-~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKG-NPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeE-eCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            5788899 999999999999999766543211     112244799999999999999999999999988776553

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.65  E-value=7.2e-15  Score=70.44  Aligned_cols=78  Identities=24%  Similarity=0.378  Sum_probs=61.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +....|+.+.|.|.+.+ .|.|.+.|++++..+.......  .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         4 ~~~~~G~~v~L~C~~~g-~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           4 IARPVGSSVRLKCVASG-NPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             eeccCCCeEEEEEEeeE-eCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            45667999999999999 9999999999987765432221  11224579999999999999999999999987777665


Q ss_pred             E
Q psy17205         97 S   97 (106)
Q Consensus        97 ~   97 (106)
                      .
T Consensus        81 ~   81 (82)
T cd05856          81 D   81 (82)
T ss_pred             e
Confidence            3

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.65  E-value=8.5e-15  Score=71.47  Aligned_cols=75  Identities=24%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcC--------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLD--------TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~--------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++..+.        ...++.....   ..|.|.++...|.|.|.|.+.|..|.....
T Consensus         1 G~~v~L~C~~~g-~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATG-NPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCc-cCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            678999999999 9999999999875321        1223333222   269999999999999999999999998877


Q ss_pred             EEEEEeC
Q psy17205         94 LELSGKY  100 (106)
Q Consensus        94 ~~l~~~~  100 (106)
                      +.|.+..
T Consensus        77 ~~l~V~~   83 (90)
T cd05726          77 AYLEVTD   83 (90)
T ss_pred             EEEEEee
Confidence            7666443

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.65  E-value=4.2e-15  Score=69.19  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=53.2

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|.+.| .|.|.+.|++++..+....++  ..   ...|.|..+...|.|.|.|.+.|..|.......+.
T Consensus         2 ~~~c~v~G-~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           2 KIPVKYYG-YPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             EEEeEEEE-eCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            68899999 999999999999988764322  11   23699999999999999999999999776654443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.65  E-value=1.8e-14  Score=69.57  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=59.0

Q ss_pred             CeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         23 RRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        23 ~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +.+.|.|.+.+ .|.|  .+.|++++..+....   ++. .........|.|.+++..|.|.|.|.+.|..|...+...|
T Consensus         1 e~~~L~C~~~g-~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   79 (85)
T cd04970           1 ESITLQCHASH-DPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL   79 (85)
T ss_pred             CcEEEEEEEec-CCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence            36789999999 8887  668999998876432   111 1111223479999999999999999999999988888777


Q ss_pred             EEeCC
Q psy17205         97 SGKYP  101 (106)
Q Consensus        97 ~~~~~  101 (106)
                      .+..|
T Consensus        80 ~V~~p   84 (85)
T cd04970          80 IVRGP   84 (85)
T ss_pred             EEECC
Confidence            76654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.64  E-value=3.4e-14  Score=69.69  Aligned_cols=80  Identities=25%  Similarity=0.322  Sum_probs=58.0

Q ss_pred             ceeeccCCeEEeec---CCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccC-CCCCEeeEEE
Q psy17205          8 LKLDTTERRIIETR---GRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVL-FTDFGNYSCV   82 (106)
Q Consensus         8 ~~~~~~~~~~~~~~---g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~   82 (106)
                      |.|...+..+.+..   +..+.|.|.+.| .|.|.+.|++++..+... .++... .   ..|.|..+. ..|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G-~P~P~i~W~k~~~~i~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~   76 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARA-NPFPIYKWRKNNLDIDLTNDRYSMV-G---GNLVINNPDKYKDAGRYVCI   76 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCcc-CCCCEEEEEECCEEccCCCCeEEEE-C---CEEEECcCCcCCCCEEEEEE
Confidence            34444444444333   347999999999 999999999999887543 333322 2   268888875 5899999999


Q ss_pred             EEcCCCcceE
Q psy17205         83 AENSMGKTRQ   92 (106)
Q Consensus        83 ~~~~~~~~~~   92 (106)
                      +.|..|...+
T Consensus        77 A~N~~G~~~s   86 (93)
T cd05849          77 VSNIYGKVRS   86 (93)
T ss_pred             EEeCcceEEE
Confidence            9999987654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.64  E-value=2.5e-14  Score=70.30  Aligned_cols=81  Identities=20%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             eeeccCCeEEee---cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccC-CCCCEeeEEEEE
Q psy17205          9 KLDTTERRIIET---RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVL-FTDFGNYSCVAE   84 (106)
Q Consensus         9 ~~~~~~~~~~~~---~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~~~   84 (106)
                      .|...+..+.+.   .|+.+.|.|.+.| .|.|.+.|++++..+...........  ...|.|..+. ..|.|.|.|.+.
T Consensus         3 ~f~~~p~~~~~~~~~~g~~v~l~C~~~G-~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           3 VFVQEPDDAIFPTDSDEKKVILNCEARG-NPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             eeEECCCcEEccCCCCCCEEEEEEEeee-cCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccCcCEEEEEEEE
Confidence            444444444433   4689999999999 99999999999988865433222211  1267888774 589999999999


Q ss_pred             cCCCcceE
Q psy17205         85 NSMGKTRQ   92 (106)
Q Consensus        85 ~~~~~~~~   92 (106)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99987653

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=8.6e-15  Score=68.42  Aligned_cols=70  Identities=29%  Similarity=0.377  Sum_probs=54.8

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      +.|.|.+.| .|.|.+.|++++..+... +....  .....|.|.++...|.|.|.|.+.|..|.....+.|.+
T Consensus         1 v~l~C~~~g-~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEG-LPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeE-ecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999999 999999999998776543 22111  12337999999999999999999999998887776653

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=4.4e-14  Score=68.33  Aligned_cols=75  Identities=25%  Similarity=0.305  Sum_probs=60.0

Q ss_pred             CCeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         14 ERRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..+.+..|+++.|.|.+ .+ .|.|.+.|++++..+... .+.....   ...|.|.++...|.|.|.|.+.|..|...
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g-~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRG-HPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCC-CCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            445677899999999998 67 899999999999887763 3333322   23799999999999999999999988754


Q ss_pred             E
Q psy17205         92 Q   92 (106)
Q Consensus        92 ~   92 (106)
                      .
T Consensus        79 s   79 (86)
T cd05724          79 S   79 (86)
T ss_pred             e
Confidence            3

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=1.6e-14  Score=67.20  Aligned_cols=68  Identities=31%  Similarity=0.354  Sum_probs=54.4

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+... +......   ..|.|.++...|.|.|.|.+.|..|.......|.
T Consensus         1 v~l~C~~~g-~P~p~v~W~k~~~~~~~~-~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGG-DPVPTVLWRKEDGELPKG-RAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECcc-CCCCEEEEEECCccCCCC-cEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            368999999 999999999997666443 3333332   2699999999999999999999999888766654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.61  E-value=1.6e-14  Score=68.23  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEc-CCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKL-DTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l-~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      .|.|.+.| .|.|.+.|++++... ...  .++.....  ...|.|.++...|.|.|.|.+.|..|.......|.+
T Consensus         2 ~l~C~~~G-~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           2 RLECAATG-HPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EeEeeccc-ccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            68999999 999999999987532 221  22222221  236899999999999999999999998877766653

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.61  E-value=2e-13  Score=67.15  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             eeeccCCeEEeecC---CeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccC-CCCCEeeEEE
Q psy17205          9 KLDTTERRIIETRG---RRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVL-FTDFGNYSCV   82 (106)
Q Consensus         9 ~~~~~~~~~~~~~g---~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~   82 (106)
                      .+...+..+.+..|   +.+.|.|.+.| .|.|.+.|++++..+....  ++... .+   .|.|.++. ..|.|.|.|.
T Consensus         3 ~f~~~P~~~~~~~~~~g~~v~l~C~a~g-~P~p~i~W~~~g~~l~~~~~~~~~~~-~g---~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           3 VFEEQPSSLLFPEGSPEEKVTLGCRARA-SPPATYRWKMNGTEIKFAPESRYTLV-AG---NLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             eeEECCCCEEecCCCCCCeEEEEeEcee-CCCCEEEEEECCEECccCCCceEEEE-CC---eEEEccCCccCcCEEEEEE
Confidence            44455555555444   57999999999 9999999999998886432  33222 22   57887755 5899999999


Q ss_pred             EEcCCCcceE
Q psy17205         83 AENSMGKTRQ   92 (106)
Q Consensus        83 ~~~~~~~~~~   92 (106)
                      +.|..|...+
T Consensus        78 A~N~~G~~~s   87 (94)
T cd05850          78 AINRCGTVVS   87 (94)
T ss_pred             EEcCcCcEEE
Confidence            9999987654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.61  E-value=4.7e-14  Score=66.94  Aligned_cols=70  Identities=26%  Similarity=0.399  Sum_probs=53.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCC-CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE--EEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE-RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ--YLELS   97 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~--~~~l~   97 (106)
                      +.|.|.+.| .|.|.+.|++++..+.... ++....  ....|.|..+...|.|.|.|.+.|..|....  .+.|.
T Consensus         1 v~L~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDG-HPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeee-cCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            468999999 9999999999998876543 222222  1337999999999999999999999987643  45544

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.60  E-value=4.6e-14  Score=66.51  Aligned_cols=63  Identities=30%  Similarity=0.415  Sum_probs=50.4

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +.|.|.+.| .|.|.+.|++++..+..  ..++.....   ..|.|.++...|.|.|.|.+.|..|...
T Consensus         1 a~l~C~~~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~   65 (74)
T cd05738           1 ATMLCAASG-NPDPEITWFKDFLPVDTTSNGRIKQLRS---GALQIENSEESDQGKYECVATNSAGTRY   65 (74)
T ss_pred             CEEEEEEeE-ecCCEEEEEECCEECccCCCCCEEEcCC---cEEEECCCChhhCEEEEEEEECCCCceE
Confidence            368999999 99999999999988763  334433222   2589999999999999999999988753

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.60  E-value=3.7e-14  Score=66.91  Aligned_cols=71  Identities=21%  Similarity=0.388  Sum_probs=54.5

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE---EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRI---METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      +.|.|.+.++.|.|.+.|++++..+....+..   .........|.|..+...|.|.|.|.+.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            36889998746889999999998887543322   222234567999999999999999999999988766543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=7.9e-14  Score=67.06  Aligned_cols=80  Identities=16%  Similarity=0.169  Sum_probs=59.9

Q ss_pred             CeEEEEEEEee-cCCCCeEEEeeCCEEcCCC---CCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         23 RRHTLIFFFHF-AFCRPQVIWYKETLKLDTT---ERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        23 ~~~~~~c~~~~-~~p~p~~~w~~~~~~l~~~---~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +++.|.|.+.+ +.+.+.+.|++++..+...   .++..... .....|.|.+++..|.|+|.|.+.|..+...+...|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            36789999976 2347789999999988632   23322111 1233799999999999999999999999988888887


Q ss_pred             EeCCC
Q psy17205         98 GKYPN  102 (106)
Q Consensus        98 ~~~~~  102 (106)
                      +..||
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            66553

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.59  E-value=3.7e-13  Score=66.34  Aligned_cols=88  Identities=26%  Similarity=0.400  Sum_probs=67.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCC--CCEEEEEc----CcEEEEEEcccCCCC-CEe
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTT--ERRIMETR----GRRHTLVIRKVLFTD-FGN   78 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~--~~~~~~~~----~~~~~l~~~~~~~~~-~g~   78 (106)
                      +|.+ .....+.+..|+.+.|.|.+.+ .|.| .+.|..++..+...  .++.+...    +..+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            4555 5566778889999999999988 7776 56888777666543  45555442    467789999998877 689


Q ss_pred             eEEEEEcCCCcceEEEEE
Q psy17205         79 YSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l   96 (106)
                      |.|.+.|.+|.....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999998877665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.59  E-value=3.5e-13  Score=66.00  Aligned_cols=83  Identities=20%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..+....+..|+.+.|.|.+.| .| +.+.|++ ++..+....+..... ......|+|.++...|.|.|.|.+.|..|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G-~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIG-EP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEe-eC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            3455577889999999999999 76 5999997 555554433433322 234568999999999999999999998654


Q ss_pred             -ceEEEEE
Q psy17205         90 -TRQYLEL   96 (106)
Q Consensus        90 -~~~~~~l   96 (106)
                       ..+.+.|
T Consensus        83 ~~~~sv~l   90 (92)
T cd04977          83 ESEATVNL   90 (92)
T ss_pred             cceeEEEE
Confidence             3445544

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.59  E-value=1e-13  Score=67.62  Aligned_cols=75  Identities=24%  Similarity=0.381  Sum_probs=54.7

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeC----CEEcCCCCC--EEEEEc-------CcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKE----TLKLDTTER--RIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~----~~~l~~~~~--~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      |+.+.|.|.+.+ .|.|.+.|++.    +..+.....  ......       .....|.|.++...|.|.|.|.+.|..|
T Consensus         1 G~~v~L~C~~~g-~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYS-DAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEec-CCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            678999999999 99999999984    333332211  111111       1124799999999999999999999999


Q ss_pred             cceEEEEEE
Q psy17205         89 KTRQYLELS   97 (106)
Q Consensus        89 ~~~~~~~l~   97 (106)
                      .......|.
T Consensus        80 ~~~~~a~L~   88 (90)
T cd05858          80 ISHHSAWLT   88 (90)
T ss_pred             cccceEEEE
Confidence            877766554

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.58  E-value=1.9e-13  Score=67.32  Aligned_cols=75  Identities=28%  Similarity=0.374  Sum_probs=56.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEccc-----CCCCCEeeEEEEEc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKV-----LFTDFGNYSCVAEN   85 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~-----~~~~~g~y~C~~~~   85 (106)
                      .+....+..|+++.|.|.+.+ .|.|.+.|++++..+....+  ......+   .+.+..+     ...|.|.|.|.+.|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N   80 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEG-EPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQN   80 (95)
T ss_pred             CCCCeEEcCCCCEEEeeeccc-CCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEEC
Confidence            344566778999999999999 99999999999988875432  2222222   3444444     57899999999999


Q ss_pred             C-CCcce
Q psy17205         86 S-MGKTR   91 (106)
Q Consensus        86 ~-~~~~~   91 (106)
                      . .|...
T Consensus        81 ~~~G~~~   87 (95)
T cd05722          81 DSLGSIV   87 (95)
T ss_pred             CccCcEE
Confidence            9 88764

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.57  E-value=8.6e-14  Score=66.52  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=56.1

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+..+.+..|+.+.|.|.+.| .|.| .+.|++++..+.....      .....|.+..+.  |.|.|.|.+.|..|..
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G-~P~P~~I~W~k~g~~l~~~~~------~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVG-PPEPVEILWWQGGSPLGDPPA------PSPSVLNVPGLN--ETSKFSCEAHNAKGVT   73 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeee-ecCCeEEEEEECCEECCCCCC------CCCCEEEEcccc--CCeEEEEEEEeccCcE
Confidence            3456678889999999999999 9999 7999999988764111      112367777764  7799999999999876


Q ss_pred             eE
Q psy17205         91 RQ   92 (106)
Q Consensus        91 ~~   92 (106)
                      .+
T Consensus        74 ~s   75 (81)
T cd05749          74 TS   75 (81)
T ss_pred             Ee
Confidence            54

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.57  E-value=4.9e-14  Score=69.21  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=59.5

Q ss_pred             eEEeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ...+..|+.+.|.|...+ .     |.+.+.|++++..+...  .+......  ...|.|..+...|+|.|.|.+.|..|
T Consensus         8 ~~~v~~G~~~~L~C~~~g-~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFY-SYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEEecCCCeEEECCCCC-cccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCc
Confidence            456778999999999887 4     67899999998654321  11112111  23699999999999999999999999


Q ss_pred             cceEEEEEE
Q psy17205         89 KTRQYLELS   97 (106)
Q Consensus        89 ~~~~~~~l~   97 (106)
                      +....+.|.
T Consensus        85 ~~~~~~~L~   93 (94)
T cd05756          85 CMKVSISLT   93 (94)
T ss_pred             cEEEEEEEE
Confidence            888776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.57  E-value=9.1e-14  Score=66.49  Aligned_cols=74  Identities=24%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCE---E-cCCCCCE--EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETL---K-LDTTERR--IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~---~-l~~~~~~--~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++.   . +......  .... .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus         1 G~~v~l~C~~~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   78 (81)
T cd05765           1 GETASFHCDVTG-RPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP   78 (81)
T ss_pred             CCcEEEEeeccc-cCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence            678999999999 9999999998731   1 1111110  0111 11247999999999999999999999999888777


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |+
T Consensus        79 l~   80 (81)
T cd05765          79 LS   80 (81)
T ss_pred             Ee
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=1.4e-13  Score=67.19  Aligned_cols=76  Identities=24%  Similarity=0.362  Sum_probs=54.7

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCC----EEcCCC--CCEEEEE-------cCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKET----LKLDTT--ERRIMET-------RGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~----~~l~~~--~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      |+.+.|.|.+.+ .|.|.+.|++++    ..+...  .......       ......|.|.++...|.|.|.|.+.|..|
T Consensus         1 G~~v~l~C~v~g-~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYS-DAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeC-CCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            578999999999 999999999863    222211  1111111       01234689999999999999999999999


Q ss_pred             cceEEEEEEE
Q psy17205         89 KTRQYLELSG   98 (106)
Q Consensus        89 ~~~~~~~l~~   98 (106)
                      ...+...|.+
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            8877666653

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.56  E-value=1.9e-13  Score=63.89  Aligned_cols=67  Identities=25%  Similarity=0.298  Sum_probs=51.5

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|...| .|.|.+.|++++..+... .++..  .  ...|.|.++...|+|.|.|.+.+........+.++
T Consensus         2 ~l~c~v~g-~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           2 RLTPKVKA-FPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             eEEeeEEE-cCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            58899999 999999999999887654 22222  1  22699999999999999999999755555444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.55  E-value=1.5e-13  Score=65.17  Aligned_cols=65  Identities=22%  Similarity=0.233  Sum_probs=47.1

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~   92 (106)
                      +.|.|.+.| .|.|.+.|++++..+....  +.....  ....|.+..+..    .|.|.|.|.+.|..|...+
T Consensus         1 ~~l~C~a~G-~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKG-KPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcc-cCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            468999999 9999999999998774332  232222  123566666553    3789999999999987665

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.55  E-value=6.9e-14  Score=66.37  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~   92 (106)
                      +.|.|.+.| .|.|.+.|++++..+.......+........|.+..+..    .|.|.|.|.+.|..|...+
T Consensus         1 i~l~C~~~G-~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKG-NPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcc-cCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            468999999 999999999999887643222222212233677777643    6899999999999987554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.54  E-value=3.9e-13  Score=63.60  Aligned_cols=70  Identities=16%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      +.|.|.+.++.|.+.+.|++++..+....    ++..........|.|.++...|.|.|.|.+.|..|.....+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            36889987525778999999998775421    22333333456799999999999999999999998876654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.54  E-value=1.6e-12  Score=62.55  Aligned_cols=80  Identities=23%  Similarity=0.357  Sum_probs=62.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE-EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      +.+..|+.+.|.|.+.+ .|.+.+.|++++..+........ ........|.|.++...|.|.|.|.+.|..|.....+.
T Consensus         4 ~~~~~G~~~~l~C~~~~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASG-NPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCC-CCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence            45667999999999999 89999999999987765433322 11233457899999999999999999999888777666


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |.
T Consensus        83 l~   84 (85)
T cd05729          83 VD   84 (85)
T ss_pred             Ee
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.52  E-value=4.2e-13  Score=63.66  Aligned_cols=65  Identities=23%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCC----CCCEeeEEEEEcCCCcceE
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLF----TDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~   92 (106)
                      +.|.|.+.| .|.|.+.|++++..+..  ..++.+..  ....|.+..+..    .|.|.|.|.+.|..|...+
T Consensus         1 ~~l~C~~~G-~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKG-NPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccc-cCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            368999999 99999999999987643  23343322  123677776542    3689999999999987665

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>KOG3513|consensus

Probab=99.52  E-value=5.2e-13  Score=86.60  Aligned_cols=93  Identities=26%  Similarity=0.248  Sum_probs=79.4

Q ss_pred             ecccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC---EEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205          4 YKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      +..+|......+...+..|+++.|.|.+.| .|.|.+.|++++..+....+   ..+..+    .|.|.++...|.|.|.
T Consensus       328 v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g-~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQ  402 (1051)
T KOG3513|consen  328 VYAPPYWLQKPQDTEADTGSNVTLECKASG-KPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQ  402 (1051)
T ss_pred             EecCchhhcccceeEecCCCCeEEEEEecC-CCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEE
Confidence            445677777888889999999999999999 99999999999999987655   544443    7999999999999999


Q ss_pred             EEEEcCCCcceEEEEEEEeCC
Q psy17205         81 CVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        81 C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.+.|..|...+...|.++..
T Consensus       403 C~A~Nk~G~i~anA~L~V~a~  423 (1051)
T KOG3513|consen  403 CIAENKYGTIYANAELKVLAS  423 (1051)
T ss_pred             eeeecccceEeeeeEEEEEcc
Confidence            999999999888777775555

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.51  E-value=7.4e-13  Score=63.81  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             CCeEEEEEEEeecC--CCCeEEEeeCCEEcCCCCC-----EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         22 GRRHTLIFFFHFAF--CRPQVIWYKETLKLDTTER-----RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        22 g~~~~~~c~~~~~~--p~p~~~w~~~~~~l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      |+.+.|.|.+.+ .  |.+.+.|...+..+.....     ...........|.|.+++..|.|.|.|.+.|..+......
T Consensus         1 Ge~~~L~C~~~g-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLT-ELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEe-CCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            678999999999 8  7889999877654432211     0011112345799999999999999999999988877766


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .|.
T Consensus        80 ~v~   82 (84)
T cd05742          80 KVN   82 (84)
T ss_pred             EEE
Confidence            554

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.51  E-value=1.4e-12  Score=63.75  Aligned_cols=79  Identities=20%  Similarity=0.236  Sum_probs=56.0

Q ss_pred             eeeccCCeEEee---cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCC-CCCEeeEEE
Q psy17205          9 KLDTTERRIIET---RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLF-TDFGNYSCV   82 (106)
Q Consensus         9 ~~~~~~~~~~~~---~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~   82 (106)
                      .|...+..+.+.   .++.+.|.|.+.+ .|.|.+.|++++..+...  .++....    ..|.|.++.. .|.|.|.|.
T Consensus         3 ~f~~~p~~~~~~~~~~~~~~~l~C~~~g-~p~p~i~W~k~~~~l~~~~~~~~~~~~----~~L~i~~~~~~~d~G~Y~C~   77 (91)
T cd04967           3 VFEEQPDDTIFPEESDEGKVSLNCRARG-SPPPTYRWLMNGTEIDDEPDSRYSLVG----GNLVISNPSKAKDAGRYQCL   77 (91)
T ss_pred             eeEeCCCCEEccCCCCCCEEEEEEeeeE-cCCCEEEEEECCEECCCCCCCCEEEEC----CEEEEecCCccCCCEEEEEE
Confidence            444444444432   3467999999999 999999999999887432  2332221    2678887764 899999999


Q ss_pred             EEcCCCcceE
Q psy17205         83 AENSMGKTRQ   92 (106)
Q Consensus        83 ~~~~~~~~~~   92 (106)
                      +.|..|....
T Consensus        78 a~N~~G~~~S   87 (91)
T cd04967          78 ASNIVGTVLS   87 (91)
T ss_pred             EEcCCCEEEe
Confidence            9999886543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.51  E-value=1.6e-12  Score=62.68  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC--cceEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG--KTRQYLE   95 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~--~~~~~~~   95 (106)
                      |+++.|.|.+.+ .|.+.+.|+..+.......    ............|.|.+++..|+|.|.|.+.|..+  ...+.+.
T Consensus         1 Ge~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQG-NEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEEC-CCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            688999999999 8999999987664322111    11111112245799999999999999999998765  4555666


Q ss_pred             EEE
Q psy17205         96 LSG   98 (106)
Q Consensus        96 l~~   98 (106)
                      |++
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            654

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.49  E-value=3.7e-12  Score=61.51  Aligned_cols=67  Identities=18%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +....+..|+++.|.|...+  +.+.+.|++++..+... .++.+.. +   .|.|.++...|.|.|.|.+.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~--~~~~i~W~~ng~~i~~~~~r~~~~~-~---~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS--NLARVVWKFDGKVLTPESAKYLLYR-D---GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEECCC--CCCeEEEEECCEECCCCCceEEEEC-C---cEEEeCCCHHHCEEEEEEEEec
Confidence            45677889999999999754  67899999999988765 3443332 2   5999999999999999999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.48  E-value=1.3e-12  Score=62.11  Aligned_cols=66  Identities=23%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+...+....+..|+.++|.|.+.+ .|. +.+.|++++..+...          ...|.+.++ ..|+|.|.|.+.+.
T Consensus         2 vv~~~P~~~~v~~G~~V~L~C~~~~-~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPPWTTIFQGEKVTLTCNGFN-SPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCCCeEeeCCCCEEEEEeCCC-CCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC
Confidence            3455566678889999999999988 775 469999999876321          125788888 89999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.47  E-value=5.6e-12  Score=62.01  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc-C-------CCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL-D-------TTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l-~-------~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .++.+..|+++.|.|.+.+ .|.|.+.|++.+..+ .       ...++.... ......|.|.++..+|.|.|.|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g-~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKE-HDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeC-CCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4577889999999999999 999999998876422 1       112333222 22356899999999999999999987


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        84 ~   84 (95)
T cd05882          84 M   84 (95)
T ss_pred             e
Confidence            3

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=2.1e-12  Score=61.51  Aligned_cols=63  Identities=24%  Similarity=0.345  Sum_probs=46.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcC--------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLD--------TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~--------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +.|.|.+.| .|.|.+.|++.+....        ...++.....   ..|.|..+...|.|.|.|.+.|..|...
T Consensus         1 v~l~C~~~G-~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   71 (79)
T cd05734           1 VTLNCSAEG-YPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADA   71 (79)
T ss_pred             CEeEeeCeE-eCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence            468999999 9999999998643211        1123332222   3699999999999999999999988764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.46  E-value=2.9e-12  Score=61.86  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .+..+.+..|++++|.|.+.++.|.+.+.|++++..+...  ..    .....|.|..+...|.|.|.|.+.|..|...+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~----~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~   80 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM----DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA   80 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc----ccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence            4556778899999999998742578899999987654332  11    11237999999999999999999999988777


Q ss_pred             EEEE
Q psy17205         93 YLEL   96 (106)
Q Consensus        93 ~~~l   96 (106)
                      ...|
T Consensus        81 ~~~l   84 (85)
T cd05754          81 TATL   84 (85)
T ss_pred             EEEE
Confidence            6554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.43  E-value=1.9e-11  Score=60.17  Aligned_cols=72  Identities=15%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE--------EcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL--------KLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~--------~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+++.+.+|+++.|.|...+ .|.+.+.|++.+.        ......++..... .....|.|.++..+|.|.|.|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~-~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQ-NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEec-CCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            45678889999999999999 8999999986321        1122235444222 245679999999999999999998


Q ss_pred             cC
Q psy17205         85 NS   86 (106)
Q Consensus        85 ~~   86 (106)
                      +.
T Consensus        83 t~   84 (95)
T cd07701          83 TM   84 (95)
T ss_pred             ee
Confidence            74

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00409 IG Immunoglobulin

Probab=99.43  E-value=6.6e-11  Score=56.46  Aligned_cols=81  Identities=30%  Similarity=0.391  Sum_probs=63.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.+ .+.+.+.|+++ +..+....++..........|.+.++...|.|.|.|.+.+..+.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        3 SVTVKEGESVTLSCEVSG-SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEcc-CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            356678999999999999 77889999998 7777645555555544456899999999999999999998776666555


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .|.
T Consensus        82 ~l~   84 (86)
T smart00409       82 TLT   84 (86)
T ss_pred             EEE
Confidence            443

>smart00410 IG_like Immunoglobulin like

Probab=99.43  E-value=6.6e-11  Score=56.46  Aligned_cols=81  Identities=30%  Similarity=0.391  Sum_probs=63.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.+ .+.+.+.|+++ +..+....++..........|.+.++...|.|.|.|.+.+..+.....+
T Consensus         3 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        3 SVTVKEGESVTLSCEVSG-SPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEcc-CCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            356678999999999999 77889999998 7777645555555544456899999999999999999998776666555


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .|.
T Consensus        82 ~l~   84 (86)
T smart00410       82 TLT   84 (86)
T ss_pred             EEE
Confidence            443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=8.7e-12  Score=60.99  Aligned_cols=74  Identities=23%  Similarity=0.340  Sum_probs=56.5

Q ss_pred             EEeecCCeEEEEEEEeecC----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         17 IIETRGRRHTLIFFFHFAF----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +.+..|+...|.|+..+..    |.|.+.|++++..+....+... .   ...|.|..+..+|+|.|.|.+.+..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~---~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-K---GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-c---CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            5567899999999875412    5789999999998876543322 2   237999999999999999999998766554


Q ss_pred             EE
Q psy17205         93 YL   94 (106)
Q Consensus        93 ~~   94 (106)
                      .+
T Consensus        81 ~~   82 (92)
T cd05757          81 NV   82 (92)
T ss_pred             EE
Confidence            33

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.42  E-value=5.8e-12  Score=61.31  Aligned_cols=79  Identities=23%  Similarity=0.253  Sum_probs=57.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC-C
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM-G   88 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~   88 (106)
                      +..+.+..|+.+.|.|...+  |.+.+.|++++..+....    ++...    ...|.|.++...|.|.|.|.+.+.. +
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~--p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS--NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC--CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccc
Confidence            44567888999999999865  778999999987665432    22221    1248899999999999999998754 4


Q ss_pred             cceEEEEEEE
Q psy17205         89 KTRQYLELSG   98 (106)
Q Consensus        89 ~~~~~~~l~~   98 (106)
                      .....+.|.+
T Consensus        77 ~~~~~~~l~V   86 (89)
T cd04979          77 QTLATYSLNV   86 (89)
T ss_pred             eeEeEEEEEE
Confidence            4445566654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.37  E-value=1.3e-11  Score=59.31  Aligned_cols=66  Identities=15%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+..|+.++|.|....+.+.+.+.|++++..+...        .....|.|..+...|+|.|.|.+.+..+..
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            357789999999998542566789999998765431        113369999999999999999999987643

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>KOG4194|consensus

Probab=99.37  E-value=6.6e-12  Score=78.00  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-cCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.|...+..+.+..|+...+.|.+.| .|.|.+.|.++|.. ++....-.+..-.....+.|.+++.+|.|.|+|.+.|
T Consensus       612 ~PsFtktP~dltl~tg~mArl~CaAtG-~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n  690 (873)
T KOG4194|consen  612 APSFTKTPEDLTLRTGQMARLECAATG-HPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQN  690 (873)
T ss_pred             cCccccCcccceeecccceeeeeeccC-CCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeec
Confidence            467888899999999999999999999 99999999988755 6654222222212244689999999999999999999


Q ss_pred             CCCcceEEEEEEEeCC
Q psy17205         86 SMGKTRQYLELSGKYP  101 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~~  101 (106)
                      .+|...+...+.+...
T Consensus       691 ~AG~isanAtL~V~e~  706 (873)
T KOG4194|consen  691 VAGQISANATLTVLET  706 (873)
T ss_pred             cccceeeceEEEEecC
Confidence            9999887666664433

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.35  E-value=1.8e-11  Score=59.97  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc-CC-------------CCCEEEEE---cCcEEEEEEcccCCCCCEee
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL-DT-------------TERRIMET---RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l-~~-------------~~~~~~~~---~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +.+..|+++.|.|...+ .+.+.+.|+++++.. ..             ..++....   ......|+|.++..+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~-~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQ-KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCC-CCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            34678999999999998 899999999765322 11             11222222   23456799999999999999


Q ss_pred             EEEEEcCCCc
Q psy17205         80 SCVAENSMGK   89 (106)
Q Consensus        80 ~C~~~~~~~~   89 (106)
                      .|.+.+..++
T Consensus        81 ~C~v~~~~~~   90 (94)
T cd07690          81 ICEVEDKKEE   90 (94)
T ss_pred             EEEECCccce
Confidence            9999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.34  E-value=9.7e-12  Score=60.98  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc--CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL--DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l--~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..+..|+.+.|.|....+.|.+.+.|++++..+  ....+..+..  ....|.+.++...|.|+|.|.+.|....
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccC
Confidence            567789999999977654899999999997643  2222322222  1237999999999999999999997544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.32  E-value=7.4e-11  Score=53.22  Aligned_cols=63  Identities=33%  Similarity=0.472  Sum_probs=48.6

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .|+.+.|.|...+ .+.+.+.|++++..+..  .....  .....|.+.++...|.|.|.|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEG-DPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCcc-CCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            3778999999887 88899999999887762  11111  2234799999999999999999987643

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.30  E-value=3e-10  Score=55.89  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-c-------CCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-L-------DTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-l-------~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+.+.+..|+.+.|.|...+ .+.+.+.|++.+.. +       ....++.... ......|.|.++...|.|.|.|.+.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKN-NDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECC-CCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            34577889999999999988 88899999853211 0       1123443321 1234579999999999999999998


Q ss_pred             cCC
Q psy17205         85 NSM   87 (106)
Q Consensus        85 ~~~   87 (106)
                      +..
T Consensus        83 ~~~   85 (95)
T cd05717          83 TMP   85 (95)
T ss_pred             cCC
Confidence            764

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.29  E-value=3.2e-11  Score=59.04  Aligned_cols=71  Identities=21%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CeEEeecCCeEEEEEE-EeecCCCCeEEEeeCCEE-cCCCCCEEEEEcCcEEEEEEcccCCCCCE-eeEEEEEcCCCc
Q psy17205         15 RRIIETRGRRHTLIFF-FHFAFCRPQVIWYKETLK-LDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMGK   89 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~-~~~~~p~p~~~w~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~~   89 (106)
                      ..+.+.+|+.+.|.|. ..+ .|.|.+.|+.++.. +....++.+...+   .|.|.++...|.| .|.|.+.+....
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g-~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKS-AVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ceeEEecCCCEEEEecCCCC-CCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEccccc
Confidence            4577889999999997 577 99999999976543 3334454443333   7999999999999 799999987533

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>KOG3513|consensus

Probab=99.29  E-value=5.9e-11  Score=77.46  Aligned_cols=80  Identities=33%  Similarity=0.373  Sum_probs=67.8

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +.+..|.++.+.|...+ .|.|.++|.+.+..+....++.+..++   +|.|.++...|.|.|+|++.|.+|.......|
T Consensus       436 ~~a~~g~~v~i~C~~~a-sP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L  511 (1051)
T KOG3513|consen  436 VMAVVGGTVTIDCKPFA-SPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNL  511 (1051)
T ss_pred             EEEEeCCeEEEeeccCC-CCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence            45667999999999999 999999999998866666677765555   89999999999999999999999998876666


Q ss_pred             EEeC
Q psy17205         97 SGKY  100 (106)
Q Consensus        97 ~~~~  100 (106)
                      .++.
T Consensus       512 ~Vkd  515 (1051)
T KOG3513|consen  512 IVKD  515 (1051)
T ss_pred             EEec
Confidence            5443

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.29  E-value=3.1e-10  Score=55.43  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEc----CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc-CCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKL----DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN-SMG   88 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l----~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~-~~~   88 (106)
                      .+....|+.+.|.|.. + .|.|.+.|++..  ..+    ....+.....    ..|.|..+...|+|.|.|.+.+ ..+
T Consensus         5 ~~~~~eG~~v~L~C~~-~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~   78 (91)
T cd05871           5 VVYGVENNSTFLECLP-K-SPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSFS   78 (91)
T ss_pred             EEEEecCCcEEEEEEC-C-CCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCCe
Confidence            3567789999999995 6 788999999742  111    1122332222    2599999999999999999984 555


Q ss_pred             cceEEEEEEE
Q psy17205         89 KTRQYLELSG   98 (106)
Q Consensus        89 ~~~~~~~l~~   98 (106)
                      .....+.|.+
T Consensus        79 ~~~~~~~l~v   88 (91)
T cd05871          79 QTLAKYTLHV   88 (91)
T ss_pred             EEEEEEEEEE
Confidence            5555555554

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.25  E-value=1.7e-09  Score=53.36  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCC--EEEEEc---CcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTER--RIMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~--~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+.+..|+++.|.|...+ .|.|. +.|.+.+..+.....  ......   ...+.|.+.+++..|.|.|.|.+.|...
T Consensus        11 ~~~~v~~gE~~~L~V~ieA-YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEA-YPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEe-CCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            3477889999999999999 99997 999988776644322  111111   1235799999999999999999999988


Q ss_pred             cceEEEEEEE
Q psy17205         89 KTRQYLELSG   98 (106)
Q Consensus        89 ~~~~~~~l~~   98 (106)
                      ..+..|.|.+
T Consensus        90 ~~s~tF~l~v   99 (101)
T cd05860          90 SASVTFNVYV   99 (101)
T ss_pred             eEEEEEEEEE
Confidence            8887887764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.24  E-value=1.4e-10  Score=52.97  Aligned_cols=61  Identities=26%  Similarity=0.266  Sum_probs=44.7

Q ss_pred             CCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcE--EEEEEcccCCCCCEeeEEEE
Q psy17205         22 GRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        22 g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~--~~l~~~~~~~~~~g~y~C~~   83 (106)
                      |+.+.|.|.+ .. .+...+.|++++..+..............  ..|.|.++...|.|.|.|.+
T Consensus         1 G~~v~L~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSG-PPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEES-SSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCC-CCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 55 67889999999876554432222222211  13999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.24  E-value=3.5e-10  Score=54.37  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +...+..|+.+.|.|...+  ....+.|+.++..+....++.....+    +.|..++..|+|.|.|.+..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s--~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS--NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCC--CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence            4567889999999999988  46799999999888766565545443    78999999999999999774

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.22  E-value=4.7e-10  Score=55.49  Aligned_cols=78  Identities=19%  Similarity=0.275  Sum_probs=54.8

Q ss_pred             eEEeecCCeEEEEEEEe----------ecCCCCeEEEeeCCEEcCCCC-------CEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         16 RIIETRGRRHTLIFFFH----------FAFCRPQVIWYKETLKLDTTE-------RRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~----------~~~p~p~~~w~~~~~~l~~~~-------~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+.+..|+.+.+.|...          +......+.|++++..+....       |+...    ...|.+..+..+|+|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~----~~~Lwf~Pa~~eDSG~   84 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE----EDSIWFRPAELQDSGL   84 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe----CCEEEEEeCChhhCeE
Confidence            36677899999999861          112344789999974443322       22222    2369999999999999


Q ss_pred             eEEEEEcCCCcceEEEEEE
Q psy17205         79 YSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l~   97 (106)
                      |.|.+.|...+....+.|+
T Consensus        85 Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          85 YTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEEECCCCcceEEEEEEE
Confidence            9999999876666666554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.21  E-value=6.5e-10  Score=52.68  Aligned_cols=70  Identities=30%  Similarity=0.414  Sum_probs=51.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc-ceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-TRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~-~~~~~~   95 (106)
                      ..+..|+.+.|.|.+.+ .|.+.+.|++++..+....       .   .+.+..+...|.|.|.|.+.+..+. ....+.
T Consensus         9 ~~v~~g~~~~l~C~~~~-~p~~~~~w~~~~~~~~~~~-------~---~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSG-NPPPQVQWYKNGSPINSSQ-------N---GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             SEEETTSEEEEEEEEES-SSSSEEEEEETTEEEEEES-------S---EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEc-ccceeeeeeeeeeeeeeee-------e---eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            34678999999999998 8889999999886655321       1   1566778889999999999986542 333444


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |.
T Consensus        78 v~   79 (80)
T PF13895_consen   78 VT   79 (80)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

...

>KOG4221|consensus

Probab=99.18  E-value=5.8e-10  Score=73.67  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      |...+....+..|+.+.|.|.+.+ .|.|++.|.+++..+.... ..+.. .....|.+.++...|+|.|.|++.|....
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~-~p~p~v~Wlrng~~i~~ds-~rivl-~g~~slliS~a~~~dSg~YtC~Atn~~D~  316 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSG-VPKPSVKWLRNGEKISVDS-YRIVL-VGGSSLLISNATDDDSGKYTCRATNTNDS  316 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecC-CCCCceEEeeCCeeeeecc-eEEEE-ecccceEEeccccccCceEEEEecCCCcc
Confidence            445666677889999999999999 9999999999998877653 22222 11336999999999999999999995544


Q ss_pred             ceEEEEEEEeCC
Q psy17205         90 TRQYLELSGKYP  101 (106)
Q Consensus        90 ~~~~~~l~~~~~  101 (106)
                      ..+...|.+..+
T Consensus       317 idasaev~V~a~  328 (1381)
T KOG4221|consen  317 IDASAEVTVLAP  328 (1381)
T ss_pred             cccceEEEEEcC
Confidence            455555554444

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.18  E-value=4.6e-10  Score=63.26  Aligned_cols=69  Identities=23%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             eEEeecCCeEEEEEEEeec----CCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         16 RIIETRGRRHTLIFFFHFA----FCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~----~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ...+..|+.+.|.|...++    .|.|.+.|++++..+....++.+...  ...|.|.++...|.|.|.|.+...
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence            3455689999999998631    35789999999999876655543322  337999999999999999999874

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.18  E-value=5.6e-09  Score=51.29  Aligned_cols=72  Identities=10%  Similarity=0.075  Sum_probs=54.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc--------CCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL--------DTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l--------~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+++.+..|+++.|.|...+ .....+.|++-+..+        ....|+.... .+...+|.|..++..|.|.|.|.+.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~-~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKN-NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             cCceEEcCCCcEEEEEEEcc-CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            34577889999999999998 766677787655322        2344665554 3557789999999999999999987


Q ss_pred             cC
Q psy17205         85 NS   86 (106)
Q Consensus        85 ~~   86 (106)
                      ..
T Consensus        83 t~   84 (95)
T cd05881          83 TD   84 (95)
T ss_pred             cc
Confidence            64

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.14  E-value=2.2e-09  Score=51.91  Aligned_cols=75  Identities=20%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             CCeEEEEEEEeecCCC--CeEEEeeCCEEcCCC---C--C-EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         22 GRRHTLIFFFHFAFCR--PQVIWYKETLKLDTT---E--R-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~---~--~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      |+.+.|.|.+.+ .+.  ..+.|...+......   .  + ...........|.|.++...|.|.|.|.+.|..+.....
T Consensus         1 Ge~~~L~C~~~~-~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTART-ELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEe-CCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            678999999987 654  477997665432110   1  1 111111234579999999999999999999987766555


Q ss_pred             EEEE
Q psy17205         94 LELS   97 (106)
Q Consensus        94 ~~l~   97 (106)
                      ..|.
T Consensus        80 t~~~   83 (86)
T cd05862          80 TIVI   83 (86)
T ss_pred             EEEE
Confidence            5444

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.11  E-value=7.9e-09  Score=61.27  Aligned_cols=75  Identities=15%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEEcCCCC-----CEEEEEc--------CcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLKLDTTE-----RRIMETR--------GRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~l~~~~-----~~~~~~~--------~~~~~l~~~~~~~~~~g   77 (106)
                      +..+.+..|+.+.|.|.+.+ .|.   +.+.|++++..+....     ++.....        .....|.|.++...|.|
T Consensus       227 p~~~~~~~G~~v~L~C~a~g-~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSL-RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CCcEEecCCCcEEEEEEEEC-CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence            34566677999999999998 776   4799999998875421     2111110        11346999999999999


Q ss_pred             eeEEEEEcCCCc
Q psy17205         78 NYSCVAENSMGK   89 (106)
Q Consensus        78 ~y~C~~~~~~~~   89 (106)
                      .|.|.+.|..+.
T Consensus       306 ~Y~C~A~n~~~~  317 (326)
T PHA02785        306 TFTCMAFTIPSI  317 (326)
T ss_pred             eeEEEEEeccCc
Confidence            999999997643

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.10  E-value=6.6e-09  Score=52.27  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=54.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-----c---------CCCCCEEEEEc--CcEEEEEEcccCCCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-----L---------DTTERRIMETR--GRRHTLVIRKVLFTD   75 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-----l---------~~~~~~~~~~~--~~~~~l~~~~~~~~~   75 (106)
                      ..+..+.+..|+++.|.|...+ .+...+.|++....     +         ....++.+...  .....|.|.+++.+|
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYST-STFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECC-CCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            3455678889999999999988 67889999975310     0         01234444332  356789999999999


Q ss_pred             CEeeEEEEEcCC
Q psy17205         76 FGNYSCVAENSM   87 (106)
Q Consensus        76 ~g~y~C~~~~~~   87 (106)
                      +|.|.|.+.+..
T Consensus        82 sG~Y~C~~~~~~   93 (109)
T cd04983          82 SAVYFCALSESG   93 (109)
T ss_pred             CEEEEEEEecCC
Confidence            999999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.08  E-value=1.3e-09  Score=51.82  Aligned_cols=66  Identities=14%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      +.|.|...++.|.+.+.||+++..+..........  ......|.+......|.+.|.|.+.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            67899998768999999999999886532110000  0123368888888889999999999987653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.06  E-value=3.3e-09  Score=52.09  Aligned_cols=73  Identities=19%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             EEeecCCeEEEEEEE-ee---cCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         17 IIETRGRRHTLIFFF-HF---AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~-~~---~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+..|....|.|+- .+   ..+.+.+.||+++..+....+...... ....|.+..+...|.|.|.|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            455678899999973 12   035679999999988875432211111 12369999999999999999999875443

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=99.02  E-value=1.2e-08  Score=51.19  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC-----EEcC-------C--CCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET-----LKLD-------T--TERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~-----~~l~-------~--~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ...+..+.+..|+++.|.|...+ .. ...+.||+..     ..+.       .  ..++..........|.|.+++.+|
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQ-SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECC-CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            34566678889999999999876 54 5679998743     1110       0  123444333455679999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      +|.|.|.+.+.
T Consensus        83 sg~Y~Ca~~~~   93 (106)
T cd04980          83 AAVYYCQQYGT   93 (106)
T ss_pred             CEEEEEEEeCC
Confidence            99999998753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.00  E-value=2.6e-08  Score=50.42  Aligned_cols=76  Identities=18%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             cCCeEEEEEEEeecCC------------CCeEEEeeCCE-----EcC----------C-CCCEEEEE---cCcEEEEEEc
Q psy17205         21 RGRRHTLIFFFHFAFC------------RPQVIWYKETL-----KLD----------T-TERRIMET---RGRRHTLVIR   69 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p------------~p~~~w~~~~~-----~l~----------~-~~~~~~~~---~~~~~~l~~~   69 (106)
                      .|++++|.|.... ..            .+.+.|++...     .+.          . ..|+.+..   .....+|+|.
T Consensus         1 ~G~~VtLpC~~~~-~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~   79 (112)
T cd05900           1 LGSSLLIPCYFQD-PIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT   79 (112)
T ss_pred             CCCcEEEeeEEeC-CcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence            4789999998876 33            35899987421     110          0 12333332   2346789999


Q ss_pred             ccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         70 KVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      ++..+|.|.|.|.+.....-....+.|.
T Consensus        80 nl~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          80 ELRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             ecccccCEEEEEEEecCCCCceeEEEEE
Confidence            9999999999999997765555555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.95  E-value=3.3e-09  Score=49.54  Aligned_cols=73  Identities=22%  Similarity=0.325  Sum_probs=45.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+...........+. +.|.|.+.+ .+ .+.+.|+ .......  ............|.+..+...|.|.|.|.+.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~-~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEG-GPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESS-EESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEcc-ccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3444444444433333 999999998 66 7899998 1111000  00111123345799999999999999999876

...

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.95  E-value=5.5e-08  Score=46.52  Aligned_cols=64  Identities=20%  Similarity=0.196  Sum_probs=42.9

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcC----cEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRG----RRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      +.|.|.+.++.|.+.+.|++++..+....... ....+    ....|.+......+.+.|.|.+.+...
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            57899998735888999999998876532111 11111    123466666666678899999998643

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.94  E-value=2.5e-08  Score=49.76  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             EeecCCeEEEEEEEeecC-CCCeEEEeeCCE-----Ec------------CCCCCEEEEEcC--cEEEEEEcccCCCCCE
Q psy17205         18 IETRGRRHTLIFFFHFAF-CRPQVIWYKETL-----KL------------DTTERRIMETRG--RRHTLVIRKVLFTDFG   77 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~-----~l------------~~~~~~~~~~~~--~~~~l~~~~~~~~~~g   77 (106)
                      .+..|+++.|.|.... . ....+.|++...     .+            ....++.+....  ....|.|.+++..|.|
T Consensus         2 ~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSG-SFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeC-CcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            4568999999999988 6 667899987532     11            011233333322  4678999999999999


Q ss_pred             eeEEEEEcCCC
Q psy17205         78 NYSCVAENSMG   88 (106)
Q Consensus        78 ~y~C~~~~~~~   88 (106)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.91  E-value=3e-08  Score=56.01  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             CeEEeecCCeEEEEEEEeecCC-----------CCeEEEeeCCEEc--C-CCCCE-----E-EEEcCcEEEEEEcccCCC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC-----------RPQVIWYKETLKL--D-TTERR-----I-METRGRRHTLVIRKVLFT   74 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p-----------~p~~~w~~~~~~l--~-~~~~~-----~-~~~~~~~~~l~~~~~~~~   74 (106)
                      ..+.+.+|+.+.|.|...+ .+           .+.+.|++.+...  . ...+.     . .........|.|.++...
T Consensus        30 ~~~~v~eGe~v~L~C~~~~-~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKH-YKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             ceEEecCCCCEEEEccccc-cccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            3467789999999999866 44           3489999987531  1 11110     0 000011347999999999


Q ss_pred             CCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         75 DFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      |.|.|.|.+.|..+.....+.|.+.
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~  133 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFD  133 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEe
Confidence            9999999999988777766666653

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.89  E-value=3.9e-08  Score=58.39  Aligned_cols=76  Identities=20%  Similarity=0.188  Sum_probs=54.7

Q ss_pred             EEeecCCeEEEEEEE-----eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         17 IIETRGRRHTLIFFF-----HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~-----~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .....|+.+.+.|..     .| .|.+.+.|++++....   +......  ...+.+..+...|+|.|.|.+.|..+...
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g-~p~~~i~W~K~g~~~~---~~~~~~~--g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~  109 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSG-YNILDILWEKRGADND---RIIPIDN--GSNMLILNPTQSDSGIYICITKNETYCDM  109 (326)
T ss_pred             hhhhcCCCEEEECCCccccccC-CCCceEEEEECCCccc---eEEEccC--CceEEEcccCcccCeEEEEEEECCCcceE
Confidence            345579999999986     56 7889999999874211   1111111  12477888899999999999999988777


Q ss_pred             EEEEEEE
Q psy17205         92 QYLELSG   98 (106)
Q Consensus        92 ~~~~l~~   98 (106)
                      ..+.|.+
T Consensus       110 ~s~~L~V  116 (326)
T PHA02785        110 MSLNLTI  116 (326)
T ss_pred             EEEEEEE
Confidence            6665553

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.89  E-value=2.1e-07  Score=46.62  Aligned_cols=76  Identities=24%  Similarity=0.336  Sum_probs=51.1

Q ss_pred             cCCeEEEEEEEeecCC------CCeEEEeeCC-----E-Ec-C-CCCC--------EEEE---EcCcEEEEEEcccCCCC
Q psy17205         21 RGRRHTLIFFFHFAFC------RPQVIWYKET-----L-KL-D-TTER--------RIME---TRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p------~p~~~w~~~~-----~-~l-~-~~~~--------~~~~---~~~~~~~l~~~~~~~~~   75 (106)
                      .|+++.|.|.... .+      ...+.|++..     . .+ . ....        ....   ......+|.|.+++..|
T Consensus         1 ~G~~V~L~C~~~~-~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD   79 (106)
T cd05714           1 LGGNVTLPCRFHL-EPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLED   79 (106)
T ss_pred             CCCCEEEeEEeEC-CcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence            4889999999876 43      4689998762     1 11 0 0100        0111   12346689999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEE
Q psy17205         76 FGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|.|.+.+..+.....+.|.
T Consensus        80 ~G~Y~C~v~~~~~~~~~~v~L~  101 (106)
T cd05714          80 SGRYRCEVIDGIEDEQDTVELE  101 (106)
T ss_pred             CEEEEEEEEcCCCceEEEEEEE
Confidence            9999999998766666666555

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.89  E-value=7e-08  Score=48.70  Aligned_cols=73  Identities=22%  Similarity=0.306  Sum_probs=51.7

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----Ec---C----------CCCCEEEEEc-CcEEEEEEcccC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KL---D----------TTERRIMETR-GRRHTLVIRKVL   72 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l---~----------~~~~~~~~~~-~~~~~l~~~~~~   72 (106)
                      ..+..+.+..|+++.|.|...+  +.+.+.||+...     .|   .          ...++..... .....|.|.+++
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            3456678889999999999866  567899998531     11   0          0123333222 245679999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.86  E-value=2.3e-08  Score=48.83  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=51.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+...+. ..+..|++++|.|....  +...+.|++++.......   ....+....|.+.++...|.|.|.|...+.
T Consensus         4 ~L~a~p~-~vV~~G~~VtL~C~~~~--~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           4 SLWAEPS-SVVPLGKPVTLRCQGPY--GAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEecCC-CccCCCCcEEEEEecCC--CCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4444443 45679999999997754  677888999876433211   111233457999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.84  E-value=2.2e-07  Score=46.51  Aligned_cols=76  Identities=24%  Similarity=0.404  Sum_probs=51.4

Q ss_pred             cCCeEEEEEEEeecCC------CCeEEEeeCCE------E-c-CC----------CCCEEEEE-cCcEEEEEEcccCCCC
Q psy17205         21 RGRRHTLIFFFHFAFC------RPQVIWYKETL------K-L-DT----------TERRIMET-RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p------~p~~~w~~~~~------~-l-~~----------~~~~~~~~-~~~~~~l~~~~~~~~~   75 (106)
                      .|+++.|.|.... .+      ...+.|++...      . + ..          ..++.+.. .....+|.|.++...|
T Consensus         1 ~G~~vtL~C~~~~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHY-EPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeEC-CCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHH
Confidence            4789999998876 43      35699997531      0 1 10          11222211 1235679999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEE
Q psy17205         76 FGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|.|.+.+..+.....+.|.
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~  101 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALR  101 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEE
Confidence            9999999998877777766655

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.84  E-value=1.6e-07  Score=47.82  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             ccCCeEEeecCCeEEEEEEEeec-CCCCeEEEeeCC--EE---c---C-----------CCCCEEEEEcC--cEEEEEEc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFA-FCRPQVIWYKET--LK---L---D-----------TTERRIMETRG--RRHTLVIR   69 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~-~p~p~~~w~~~~--~~---l---~-----------~~~~~~~~~~~--~~~~l~~~   69 (106)
                      ..+..+.+..|+++.|.|...+. .+.+.+.|++..  ..   +   .           ...++.+....  ....|+|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            34566788899999999998651 246689999842  11   0   0           12344444333  46789999


Q ss_pred             ccCCCCCEeeEEEEEc
Q psy17205         70 KVLFTDFGNYSCVAEN   85 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~   85 (106)
                      ++..+|.|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4221|consensus

Probab=98.81  E-value=5.9e-09  Score=69.18  Aligned_cols=93  Identities=19%  Similarity=0.212  Sum_probs=74.2

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.|...+..+.+.++.++.|.|...+ .|.|.+.|++++..+...+.+.+...+   .++|..+...|.|.|.|...
T Consensus       326 ~a~P~~~~~p~~l~A~e~~die~ec~~~g-~p~p~v~w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvae  401 (1381)
T KOG4221|consen  326 LAPPGFTKAPTTLVAHESMDIEFECPVSG-KPIPTVRWYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAE  401 (1381)
T ss_pred             EcCCCCCCCCcceeeeeccceeEeCCCCC-CCcceEEEEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhc
Confidence            34567777777788888999999999999 899999999999877766555555543   28888888999999999999


Q ss_pred             cCCCcceEEEEEEEeCC
Q psy17205         85 NSMGKTRQYLELSGKYP  101 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~~  101 (106)
                      |..|.......+.+++.
T Consensus       402 n~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  402 NDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             cCcccccchhhheeccC
Confidence            99988777655543333

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.81  E-value=3.5e-07  Score=45.34  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=47.6

Q ss_pred             CCeEEEEEEEeecCC---CCeEEEeeCCE--Ec---------C------CCCCEEEEE---cCcEEEEEEcccCCCCCEe
Q psy17205         22 GRRHTLIFFFHFAFC---RPQVIWYKETL--KL---------D------TTERRIMET---RGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        22 g~~~~~~c~~~~~~p---~p~~~w~~~~~--~l---------~------~~~~~~~~~---~~~~~~l~~~~~~~~~~g~   78 (106)
                      |+++.|.|.... ..   ...+.|++...  .+         .      ...|+.+..   .....+|+|.+++..|.|.
T Consensus         1 G~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   79 (100)
T cd05713           1 GEDAELPCHLSP-KMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGL   79 (100)
T ss_pred             CCcEEEEeEEcC-CCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEE
Confidence            678889998764 22   23577876541  11         0      001222211   1235689999999999999


Q ss_pred             eEEEEEcCCCcceEEEEEE
Q psy17205         79 YSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l~   97 (106)
                      |.|.+.+..+.....+.|.
T Consensus        80 Y~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          80 YTCFFQSDGFYEEATVELK   98 (100)
T ss_pred             EEEEEecCCcEEEEEEEEE
Confidence            9999998766666666655

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.80  E-value=4.1e-07  Score=44.85  Aligned_cols=75  Identities=24%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             CeEEEEEEEeecCC---CCeEEEeeCCEE-------c--------CC--CCCEEEEEc-CcEEEEEEcccCCCCCEeeEE
Q psy17205         23 RRHTLIFFFHFAFC---RPQVIWYKETLK-------L--------DT--TERRIMETR-GRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        23 ~~~~~~c~~~~~~p---~p~~~w~~~~~~-------l--------~~--~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      +++.|.|.... ..   ...+.|++....       .        ..  ..+..+... ....+|.|.++...|.|.|.|
T Consensus         1 ~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPV-PGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeC-CCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEE
Confidence            46789998876 43   347899875421       0        01  011111111 135689999999999999999


Q ss_pred             EEEc-CCCcceEEEEEEE
Q psy17205         82 VAEN-SMGKTRQYLELSG   98 (106)
Q Consensus        82 ~~~~-~~~~~~~~~~l~~   98 (106)
                      .+.. ..|...+.+.|.+
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9875 5677777666653

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.79  E-value=1.2e-07  Score=46.87  Aligned_cols=68  Identities=19%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             EeecCCeEEEEEEEeecC--CCCeEEEeeCCE--Ec---C---------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205         18 IETRGRRHTLIFFFHFAF--CRPQVIWYKETL--KL---D---------TTERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~~--~l---~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .+..|+++.|.|.... .  ....+.||+...  .+   .         ...++..........|.|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~-~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSS-GNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcC-CCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            3568999999999876 4  456789987431  11   0         0124554444556789999999999999999


Q ss_pred             EEEcC
Q psy17205         82 VAENS   86 (106)
Q Consensus        82 ~~~~~   86 (106)
                      .+.+.
T Consensus        81 ~~~~~   85 (98)
T cd04984          81 QVWDS   85 (98)
T ss_pred             EEccC
Confidence            98753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.79  E-value=1.3e-06  Score=44.51  Aligned_cols=74  Identities=22%  Similarity=0.268  Sum_probs=50.5

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC----CCeEEEe---------------eCCEEcCC-----CCCEEEEE--cCcEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWY---------------KETLKLDT-----TERRIMET--RGRRHTLV   67 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~---------------~~~~~l~~-----~~~~~~~~--~~~~~~l~   67 (106)
                      +..+.+..|+.+.|.|.... ..    ...+.|.               +++.....     ..|.....  ...+.++.
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~-~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWS-SEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             cceEEEEcCCcEEEEEEEec-CCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            34567889999999999876 43    3588992               23332211     12332221  23467899


Q ss_pred             EcccCCCCCEeeEEEEEcCCC
Q psy17205         68 IRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      |.+++.+|.|.|.|.+.|..+
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCC
Confidence            999999999999999998754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.78  E-value=5.3e-07  Score=45.56  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=49.9

Q ss_pred             cCCeEEEEEEEeecCC----------CCeEEEeeCC--EE---c---------CC--CCCEEEEE---cCcEEEEEEccc
Q psy17205         21 RGRRHTLIFFFHFAFC----------RPQVIWYKET--LK---L---------DT--TERRIMET---RGRRHTLVIRKV   71 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p----------~p~~~w~~~~--~~---l---------~~--~~~~~~~~---~~~~~~l~~~~~   71 (106)
                      .|+++.|.|.... .+          ...+.|++..  ..   +         ..  ..|+.+..   .....+|+|.++
T Consensus         1 ~G~~V~LpC~~~~-~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l   79 (110)
T cd05878           1 LSSSVLLPCYFTL-PPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL   79 (110)
T ss_pred             CCCCEEEeeEeeC-CccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC
Confidence            4889999999876 43          2568998752  11   1         00  01222211   134567999999


Q ss_pred             CCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         72 LFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +.+|.|.|.|.+.......+..+.|.
T Consensus        80 ~~sD~G~Y~C~v~~~~~~~~~~v~l~  105 (110)
T cd05878          80 RSSDSGVYRCEVMHGIEDEQDTVPLE  105 (110)
T ss_pred             ChhhCEEEEEEEEeCCCcceEEEEEE
Confidence            99999999999987655555555554

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>KOG4222|consensus

Probab=98.77  E-value=3.6e-08  Score=65.27  Aligned_cols=80  Identities=26%  Similarity=0.377  Sum_probs=62.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |...++.+.+..|+.+.+.|....+.|.|.+.|.+++..+....  ...+...+   .|.|.++...|.|.|.|++.|..
T Consensus       134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmv  210 (1281)
T KOG4222|consen  134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNMV  210 (1281)
T ss_pred             cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC---cEEEeccccCCCceeeeeecccc
Confidence            34455567777899999999776547899999999999887442  23333333   69999999999999999999998


Q ss_pred             CcceE
Q psy17205         88 GKTRQ   92 (106)
Q Consensus        88 ~~~~~   92 (106)
                      |....
T Consensus       211 G~ReS  215 (1281)
T KOG4222|consen  211 GERES  215 (1281)
T ss_pred             ccccc
Confidence            87664

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.76  E-value=2.5e-07  Score=46.36  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEE-----c----CC----------CCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLK-----L----DT----------TERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-----l----~~----------~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+..|+++.|.|.... .....+.|++....     +    ..          ..|..+..+   .+|.|.++...|.|.
T Consensus         9 ~~~~G~~V~L~v~~~p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n---gSL~I~~v~~~D~G~   84 (105)
T cd05774           9 QVAEGENVLLLVHNLP-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN---GSLLIQNVTQKDTGF   84 (105)
T ss_pred             cccCCCCEEEEecCCC-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC---CcEEEecCCcccCEE
Confidence            4568999999986654 44558999986311     1    11          112222222   379999999999999


Q ss_pred             eEEEEEcCC-CcceEEEEE
Q psy17205         79 YSCVAENSM-GKTRQYLEL   96 (106)
Q Consensus        79 y~C~~~~~~-~~~~~~~~l   96 (106)
                      |.|.+.+.. ......+.+
T Consensus        85 Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          85 YTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEEEEeCCccEEEEEEEE
Confidence            999998864 333334443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.69  E-value=5.9e-07  Score=45.73  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=51.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---------CCCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---------DTTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---------~~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      ..+..+.+..|+++.|.|..........+.|++..  .   .+         ....++.+..  ......|+|.++..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            44566788899999999998761245678998742  1   11         0123454432  2346789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      .|.|.|.+..
T Consensus        84 sg~Y~C~~~~   93 (116)
T cd07706          84 SAKYFCALST   93 (116)
T ss_pred             CEEEEEEEEC
Confidence            9999999885

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.68  E-value=6.2e-07  Score=43.68  Aligned_cols=64  Identities=22%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCC------------------CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDT------------------TERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      |++++|.|.... .....+.|++.......                  ..++.+.  . ..+|.|.++...|+|.|.|.+
T Consensus         1 G~~VtL~c~~~~-~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~-~~sL~I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLP-ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--P-NGSLLIQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCC-CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--C-CceEEEccCCchhcEEEEEEE
Confidence            678999998876 66678999886522110                  0111111  1 257999999999999999999


Q ss_pred             EcCCCc
Q psy17205         84 ENSMGK   89 (106)
Q Consensus        84 ~~~~~~   89 (106)
                      ....+.
T Consensus        77 ~~~~~~   82 (92)
T cd05741          77 ISTNGV   82 (92)
T ss_pred             EcCCCc
Confidence            886533

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.66  E-value=6.6e-07  Score=44.36  Aligned_cols=71  Identities=20%  Similarity=0.132  Sum_probs=46.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCCe--EEEeeCCEEcCCCCCEEE--EEcCcEEEEEEcccCCCCCE-eeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQ--VIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFG-NYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~--~~w~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~   88 (106)
                      ..+..|+.+++.|.+.++.|.+.  +.||+++..+........  .......++.+.. .+.|.| .|.|.+.+...
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLR   86 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccC
Confidence            34578999999999998567776  699999988865321110  0111233455543 345555 89999987643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.65  E-value=1.9e-06  Score=43.90  Aligned_cols=74  Identities=22%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCCE------Ec---C-------CC----CCEEEEE--cCcEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKETL------KL---D-------TT----ERRIMET--RGRRHTLV   67 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~~------~l---~-------~~----~~~~~~~--~~~~~~l~   67 (106)
                      +..+.+..|+.+.|.|.... ..    ...+.|++...      .+   .       ..    .|+.+..  .....+|+
T Consensus         5 p~~v~v~~G~~vtL~C~~s~-~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSS-SEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeC-CCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            45577889999999998865 32    24689975321      11   0       01    1111111  12356799


Q ss_pred             EcccCCCCCEeeEEEEEcCCC
Q psy17205         68 IRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      |.+++.+|.|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999997644

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.64  E-value=9.9e-07  Score=44.93  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=48.7

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC----CCeEEEeeC----CE--Ec----C-----CC----CCEEEEE--cCcEEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKE----TL--KL----D-----TT----ERRIMET--RGRRHTLVI   68 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~----~~--~l----~-----~~----~~~~~~~--~~~~~~l~~   68 (106)
                      +..+.+..|+++.|.|.... .+    ...+.|++.    +.  .+    .     ..    .+.....  .....+|.|
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~-~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSS-SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEe-CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45678889999999999865 33    236899742    11  11    0     00    1111111  123567999


Q ss_pred             cccCCCCCEeeEEEEEcCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+++..|.|.|.|.+.+..+
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999997644

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.63  E-value=2.6e-06  Score=43.61  Aligned_cols=73  Identities=18%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC------CCeEEEeeCCEE-------c-CC---------CCCEEEE--EcCcEEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC------RPQVIWYKETLK-------L-DT---------TERRIME--TRGRRHTLV   67 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p------~p~~~w~~~~~~-------l-~~---------~~~~~~~--~~~~~~~l~   67 (106)
                      .+..+.+..|+.++|.|.... ..      ...+.|++....       + ..         ..|+.+.  .......|.
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~-~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSY-PADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeC-cccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            355678889999999998764 21      245889875311       0 00         0133332  123456899


Q ss_pred             EcccCCCCCEeeEEEEEcC
Q psy17205         68 IRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999998654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.63  E-value=5e-06  Score=41.73  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=52.6

Q ss_pred             ccCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCE-----EcC--------------CCCCEEEEEc--CcEEEEEEc
Q psy17205         12 TTERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETL-----KLD--------------TTERRIMETR--GRRHTLVIR   69 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~-----~l~--------------~~~~~~~~~~--~~~~~l~~~   69 (106)
                      ..+..+.+..|+++.|.|... . .....+.|++...     .+.              ...+..+..+  .....|.|.
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~-~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~   84 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSS-SNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK   84 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESS-SSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred             EeCCeEEEecCCCEEEEEEEeCC-CCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence            345668888999999999998 5 5677899987321     111              0112222222  235689999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      ++...|.|.|.|.+...
T Consensus        85 ~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   85 NLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SESGGGEEEEEEEEEES
T ss_pred             CCCcCcCEEEEEEEEEC
Confidence            99999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>KOG4222|consensus

Probab=98.62  E-value=8.9e-08  Score=63.53  Aligned_cols=91  Identities=24%  Similarity=0.241  Sum_probs=69.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ..|.|...+..+.+..|..+.+.|...| .|.|.+.|.+++..++.........   ..++.+.++...|.|.|.|.+.|
T Consensus       224 e~P~f~~rp~~~~v~~g~~~~f~c~v~G-dP~P~Vrwkk~~~~~P~~ry~i~~d---~qtl~i~r~tp~deg~y~C~a~n  299 (1281)
T KOG4222|consen  224 EKPWFWKRPKDLAVLVGAAAEFDCRVGG-DPQPTVRWKKDDPSLPRSRYSILDD---TQTLRIDRVTPTDEGTYVCPAEN  299 (1281)
T ss_pred             cCCccccccccceeecccccccccccCC-CCCCceeeeccCCCCCccceeeeec---cccccccccCCCcccceeeeccc
Confidence            4566777777788889999999999999 9999999998776666553222221   23689999999999999999999


Q ss_pred             CCCcceEEEEEEEeC
Q psy17205         86 SMGKTRQYLELSGKY  100 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~  100 (106)
                      ..|.-...-.+++..
T Consensus       300 ~vG~l~asa~ltV~a  314 (1281)
T KOG4222|consen  300 LVGGLEASATLTVQA  314 (1281)
T ss_pred             cccccccccceEEec
Confidence            988776654444333

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.61  E-value=1.2e-06  Score=41.93  Aligned_cols=65  Identities=12%  Similarity=0.052  Sum_probs=40.8

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-C---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-G---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +.|.|.+.++.|.+.+.|++++..+........... +   ....+.+......+...|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            578999988458889999999988764321111111 1   1223444444444567999999986543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.60  E-value=1.4e-06  Score=41.60  Aligned_cols=63  Identities=11%  Similarity=0.030  Sum_probs=42.7

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE---cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET---RGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +.|.|.+.+..|.+.|.|++++..+..........   ......|.+..-..-|...|.|.+.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            57899998857889999999998887642211111   1123356665555556668999999865

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>KOG4194|consensus

Probab=98.59  E-value=3.3e-07  Score=57.93  Aligned_cols=85  Identities=24%  Similarity=0.358  Sum_probs=62.1

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+..+-....+..|+.+.+.|.+.+ .|. |++.|++.++.+...++.....  ++.-+.+......|.|.|+|.+.+
T Consensus       706 ~p~f~~PL~~~~V~~get~vlqC~a~~-~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~  782 (873)
T KOG4194|consen  706 TPSFSIPLEDQLVVVGETLVLQCLAEG-APADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSN  782 (873)
T ss_pred             CCcccccccceEEEecceEEEEEecCC-CCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEe
Confidence            344555555677889999999999999 776 9999999987765544332222  233577777778999999999999


Q ss_pred             CCCcceEEE
Q psy17205         86 SMGKTRQYL   94 (106)
Q Consensus        86 ~~~~~~~~~   94 (106)
                      ..|.....+
T Consensus       783 ~~~~~~~~i  791 (873)
T KOG4194|consen  783 TLGTERIHI  791 (873)
T ss_pred             eccceeeEE
Confidence            877665543

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.58  E-value=6.1e-07  Score=44.08  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=44.5

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+..|++++|.|....  ..-.+.|++++...................|.|..+...|+|.|.|...
T Consensus        10 ~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          10 PVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            45679999999997754  4457889998754322100000011234478999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.58  E-value=1.3e-06  Score=43.21  Aligned_cols=77  Identities=17%  Similarity=0.115  Sum_probs=48.4

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcC--C-----C------CCE--EEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLD--T-----T------ERR--IMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~--~-----~------~~~--~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|++++|.|..........+.|++....+.  .     .      .++  .........+|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            689999999664312344788987642211  0     0      011  122223456899999999999999999998


Q ss_pred             CCCcc-eEEEEEE
Q psy17205         86 SMGKT-RQYLELS   97 (106)
Q Consensus        86 ~~~~~-~~~~~l~   97 (106)
                      ..+.. ...+.|.
T Consensus        83 ~~~~~~~~~f~L~   95 (97)
T cd05775          83 KNGVTITKEFTLH   95 (97)
T ss_pred             CCCCeEEEEEEEE
Confidence            76544 3345543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.56  E-value=3.6e-06  Score=40.51  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             EeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         18 IETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .+..|++++|.|.... ...|  .+.|...+....      ........+|.+..+...|+|.|.|.+....-.....+.
T Consensus        10 ~lL~G~sLtLtl~~~s-~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694          10 HVLSGTNLTLTLHGSS-NSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             eeecCCcEEEEEecCC-CCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            5678999999999966 4444  899975442211      111122447889999999999999999754333333444


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      +.
T Consensus        83 V~   84 (88)
T cd07694          83 IK   84 (88)
T ss_pred             EE
Confidence            43

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.52  E-value=2e-06  Score=42.09  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=45.3

Q ss_pred             ecCCeEEEEEEEeecC-C-CCeEEEeeCCEEcCCCCC---EEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         20 TRGRRHTLIFFFHFAF-C-RPQVIWYKETLKLDTTER---RIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p-~p~~~w~~~~~~l~~~~~---~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..|+.+.|.|.+.+ . | ...+.|++++..+.....   ......+...   .|.+......+.+.|.|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATG-FYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEee-EECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            36889999999999 7 5 358999999988765432   1111112222   355555544588999999988643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.50  E-value=6.4e-06  Score=39.55  Aligned_cols=64  Identities=13%  Similarity=0.130  Sum_probs=41.3

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cC-c---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RG-R---RHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~-~---~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      +.|.|.+.+..|.+.+.|++++..+.......... .+ .   ...+.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            57899999845888999999998876543211111 11 1   12344444445566799999998653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.48  E-value=3e-06  Score=42.40  Aligned_cols=66  Identities=14%  Similarity=0.152  Sum_probs=45.1

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEE-------c---CC------------CCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLK-------L---DT------------TERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-------l---~~------------~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      +..|+++.|.|.... .....+.|++....       +   ..            ..++..........|.|.+++.+|+
T Consensus         3 v~~G~~vtL~C~~~~-~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           3 AELGQKVELKCEVLN-SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             ccCCCeEEEEEEecC-CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            457999999998866 44566889875311       1   00            1123332334566799999999999


Q ss_pred             EeeEEEEEc
Q psy17205         77 GNYSCVAEN   85 (106)
Q Consensus        77 g~y~C~~~~   85 (106)
                      |.|.|...+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.47  E-value=8.9e-06  Score=44.39  Aligned_cols=82  Identities=15%  Similarity=0.214  Sum_probs=55.0

Q ss_pred             CeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEc----------CC--CCCEE-EEEcCcEEEEEEcccCCCCCEeeE
Q psy17205         15 RRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKL----------DT--TERRI-METRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l----------~~--~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      ..+.+.+|+++.|.|... + ...+.+.|++....+          ..  ..|+. +........++|.++...|.|.|.
T Consensus        23 ~~v~V~ege~VtLsCs~t~s-~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSS-FNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCC-CccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE
Confidence            356778999999999985 5 567899998863211          11  12333 222334567999999999999999


Q ss_pred             EEEEc-CCC-cceEEEEEE
Q psy17205         81 CVAEN-SMG-KTRQYLELS   97 (106)
Q Consensus        81 C~~~~-~~~-~~~~~~~l~   97 (106)
                      |.... +.| ..+...-|.
T Consensus       102 C~F~tfp~G~~~~gt~CLt  120 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLN  120 (189)
T ss_pred             EEEEecCCCCCceeEEEEE
Confidence            99875 345 444444333

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.46  E-value=6.9e-06  Score=40.79  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=28.8

Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEEE
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLELS   97 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~   97 (106)
                      ...+|+|.++..+|.|.|.|.+.+ +.|..++.+.|.
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~   98 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT   98 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence            356799999999999999999987 566666565554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.45  E-value=2e-05  Score=39.86  Aligned_cols=75  Identities=17%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             CCeEEEEEEEeecCC-------CCeEEEeeCC-----EE----cCCC----------CCEEEEE---cCcEEEEEEcccC
Q psy17205         22 GRRHTLIFFFHFAFC-------RPQVIWYKET-----LK----LDTT----------ERRIMET---RGRRHTLVIRKVL   72 (106)
Q Consensus        22 g~~~~~~c~~~~~~p-------~p~~~w~~~~-----~~----l~~~----------~~~~~~~---~~~~~~l~~~~~~   72 (106)
                      |+++.|.|.... .|       .+.+.|.+..     ..    +...          .|..+..   ..+..+|.|.++.
T Consensus         2 ~~~v~LpC~~~~-~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           2 SSSVLLPCVFTL-PPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCcEEEeeEEEc-CccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            678899998653 22       4688897641     10    1001          1222222   1246789999999


Q ss_pred             CCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         73 FTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .+|.|.|.|.+..........+.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~  105 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLE  105 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEE
Confidence            9999999999998665555556555

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.45  E-value=2.1e-05  Score=40.12  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +..+|.|.++...|.|.|.|.+..........+.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~  112 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD  112 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence            467899999999999999999998766666665555

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.43  E-value=7.4e-06  Score=40.42  Aligned_cols=71  Identities=14%  Similarity=0.105  Sum_probs=48.0

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----Ec--------CCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KL--------DTTERRIMET--RGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l--------~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      +.+..|+++.|.|..........+.|++...     .+        ....++.+..  ......|.|.++..+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            3567899999999876512456788987641     11        0112343322  2345689999999999999999


Q ss_pred             EEEcCC
Q psy17205         82 VAENSM   87 (106)
Q Consensus        82 ~~~~~~   87 (106)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            887653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00096 Ig Immunoglobulin domain

Probab=98.43  E-value=6.6e-06  Score=37.14  Aligned_cols=61  Identities=31%  Similarity=0.391  Sum_probs=43.8

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEcCCCCCE----EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+.|...+ .+...+.|++++.........    ..........+.+..+...|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            67899988 788999999987665443211    11111334578999999999999999988764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.42  E-value=1e-05  Score=38.86  Aligned_cols=63  Identities=16%  Similarity=0.084  Sum_probs=40.0

Q ss_pred             EEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         25 HTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--RG---RRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        25 ~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +.|.|.+.+..|...+.|++++..+..........  .+   ....+.+......+...|.|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            57899998856778899999998875432111111  11   12245555444455668999998764

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.40  E-value=2.1e-05  Score=38.06  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=40.9

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc--C---cEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR--G---RRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ++.+.+.|.+.++.|.|.+.|+.++..+...........  +   ....|.+..-...+...+.|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            779999998877689999999998866611100011110  1   122455554444456689999988643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA03376 BARF1; Provisional

Probab=98.40  E-value=1.3e-05  Score=43.90  Aligned_cols=73  Identities=18%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             eEEeecCCeEEEEEEEee--cCCCCeEEEeeCCE----E-c--CC----------CCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         16 RIIETRGRRHTLIFFFHF--AFCRPQVIWYKETL----K-L--DT----------TERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~--~~p~p~~~w~~~~~----~-l--~~----------~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      .+....|+++.|.|....  -.....+.|++.+.    . +  ..          ..+..+....+..+|.|.++..+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            466778999999997762  02455789999421    1 1  01          1122222334567899999999999


Q ss_pred             EeeEEEEEcCCC
Q psy17205         77 GNYSCVAENSMG   88 (106)
Q Consensus        77 g~y~C~~~~~~~   88 (106)
                      |+|.|.+.....
T Consensus       100 GtY~C~fQkge~  111 (221)
T PHA03376        100 GNYLCRMKLGET  111 (221)
T ss_pred             ceEEEEEEcCCC
Confidence            999999987543

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.39  E-value=2.7e-05  Score=38.68  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=30.4

Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEEEE
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLELSG   98 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~~   98 (106)
                      .+.++.|.++...|.|.|.|.+.+ +.|..++.+.|.+
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            356899999999999999999998 5777676666653

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.37  E-value=9.4e-06  Score=40.77  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             EeecCCeEEEEEEEeecCC-CCeEEEeeCCEE--------c---CC-----------CCCEEEE--EcCcEEEEEEcccC
Q psy17205         18 IETRGRRHTLIFFFHFAFC-RPQVIWYKETLK--------L---DT-----------TERRIME--TRGRRHTLVIRKVL   72 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~--------l---~~-----------~~~~~~~--~~~~~~~l~~~~~~   72 (106)
                      .+..|++++|.|.... .. ...+.||+....        +   ..           ..++...  .......|+|.+++
T Consensus         2 ~v~~G~~vtL~C~~~~-~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKG-ISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEec-CCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            4668999999999865 33 457899875321        0   00           1233221  12335579999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|.|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.35  E-value=1.1e-05  Score=39.81  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             CCeEEEEEEEeecCCC-CeEEEeeCCE----Ec----C-CC--------CCEEEE-EcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         22 GRRHTLIFFFHFAFCR-PQVIWYKETL----KL----D-TT--------ERRIME-TRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~-p~~~w~~~~~----~l----~-~~--------~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      |++++|.|.... ... -.+.|++...    .+    . .+        .+.... ......+|.|.++..+|.|.|.|.
T Consensus         1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~   79 (97)
T cd05846           1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI   79 (97)
T ss_pred             CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence            678999998665 332 2688987421    10    0 00        111111 112456799999999999999999


Q ss_pred             EEc-CCCcceEEEEEE
Q psy17205         83 AEN-SMGKTRQYLELS   97 (106)
Q Consensus        83 ~~~-~~~~~~~~~~l~   97 (106)
                      +.. +.|.....+-|+
T Consensus        80 ~~~~p~g~~~~~~~L~   95 (97)
T cd05846          80 FNTFPDGSKSGTMCLT   95 (97)
T ss_pred             EEeCCCCCeeeEEEEE
Confidence            875 455555555544

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.34  E-value=2.7e-05  Score=38.42  Aligned_cols=76  Identities=22%  Similarity=0.281  Sum_probs=47.9

Q ss_pred             CeEEEEEEEeecCCCCeEEEeeCC----EEcC------------C-CCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         23 RRHTLIFFFHFAFCRPQVIWYKET----LKLD------------T-TERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        23 ~~~~~~c~~~~~~p~p~~~w~~~~----~~l~------------~-~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +++.|.|.........++.|.+..    ..+.            . ..|..+. ....+.++.|.++...|.|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            357888887641233478887642    1111            0 1132221 12335689999999999999999986


Q ss_pred             c-CCCcceEEEEEEE
Q psy17205         85 N-SMGKTRQYLELSG   98 (106)
Q Consensus        85 ~-~~~~~~~~~~l~~   98 (106)
                      + +.|...+...|.+
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            5 5778777776653

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.30  E-value=2.5e-05  Score=38.26  Aligned_cols=65  Identities=22%  Similarity=0.194  Sum_probs=39.4

Q ss_pred             CCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         22 GRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ++...|.|.+.+ +.++  .+.|.+++..+....   .......+.........+...+...|.|.+.+..
T Consensus        14 ~~~~~L~C~a~g-F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATG-FYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEE-EeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            678999999999 7544  789999986433221   1111112222222333344457789999998753

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.25  E-value=4e-05  Score=40.27  Aligned_cols=80  Identities=14%  Similarity=0.148  Sum_probs=45.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCC----CCCEE-----EEEcCc---EEEEEEcccC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDT----TERRI-----METRGR---RHTLVIRKVL   72 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~----~~~~~-----~~~~~~---~~~l~~~~~~   72 (106)
                      +|.+...........|+.+.|.|.+.+ . |. ..+.|++++.....    .....     ....+.   ...|.+....
T Consensus        38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g-~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~  116 (139)
T cd05771          38 PPRVRLSLEKLVSMIEEPQTLICHIAG-YYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGT  116 (139)
T ss_pred             CCceEEeCCCceeecCCcEEEEEEECC-CCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCc
Confidence            444443333334446788999999998 6 43 48999998743211    01111     111121   1245555444


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..+...|.|.+.+..
T Consensus       117 ~~~g~~ytC~V~H~~  131 (139)
T cd05771         117 EDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCCCEEEEEEEcCC
Confidence            445668999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.22  E-value=5.1e-05  Score=38.80  Aligned_cols=71  Identities=14%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCCE-----Ec---CC-----------CCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKETL-----KL---DT-----------TERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~-----~l---~~-----------~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|++++|.|.... ..  ...+.||+...     .+   ..           ..++.....  .....|.|.+
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~-~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASG-FTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeC-CCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            34567789999999998765 33  45688987431     11   00           123433322  2345799999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +..+|+|.|.|....
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.11  E-value=5.4e-05  Score=35.66  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.4

Q ss_pred             CcEEEEEEcccCCCCCEeeEEE
Q psy17205         61 GRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        61 ~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      .....|.|.+++..|.|.|.|.
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEc
Confidence            4567899999999999999995

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.10  E-value=0.00015  Score=35.78  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEE
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLEL   96 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l   96 (106)
                      .+.++.|.++...|.|.|.|.+.. +.|...+.+.+
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            346899999999999999999976 46666665544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.92  E-value=0.0004  Score=34.14  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++...|.|.+.+ +.++  .+.|++++..+....   .......+.........+...+...|.|.+....
T Consensus        13 ~~~~~~L~C~~~g-FyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWG-FYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEee-ecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            5788999999999 6444  678999998765531   1111111222222222333345568999998753

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.88  E-value=0.00057  Score=34.67  Aligned_cols=67  Identities=18%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             eecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEE-EEcC-c---EEEEEEcccCCCCCE-eeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIM-ETRG-R---RHTLVIRKVLFTDFG-NYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~-~~~~-~---~~~l~~~~~~~~~~g-~y~C~~~~~~   87 (106)
                      ...|+.++|.|.+.+ +-+  ..+.|++|+..+........ ...+ .   ...|.+... ..|.+ .|.|.+....
T Consensus        18 ~~~g~~~tL~C~a~g-F~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHG-FSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEee-EeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCC
Confidence            446788999999998 543  48899999988764321111 1111 1   122444432 23333 5999998754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.84  E-value=6.6e-05  Score=39.43  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             EEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        65 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      +|+|.+++..|.|.|.|.+.+..+.....+.|.+..+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~   38 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP   38 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC
Confidence            6899999999999999999987777766666664443

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.77  E-value=0.00053  Score=33.82  Aligned_cols=73  Identities=8%  Similarity=-0.052  Sum_probs=40.4

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      -....+.|.+.++.|.+.+.|+++...... ........+.   ...|.+......+...+.|.+.+..-.....+.
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~   90 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP   90 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence            345778898886589999999987211100 0000111111   223555444444556899999987544444333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.68  E-value=0.0012  Score=32.52  Aligned_cols=67  Identities=6%  Similarity=-0.012  Sum_probs=38.3

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE--EEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM--ETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~--~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .......|.+.++.|.+.|.|+++.   ........  ..++.   ...|.+......+...|.|.+.+..-...
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            4456788999765899999999871   11100111  11111   22455544444455689999998754433

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.67  E-value=0.00097  Score=31.27  Aligned_cols=61  Identities=15%  Similarity=0.304  Sum_probs=36.2

Q ss_pred             EEEEEEEeecC-CC-CeEEEeeCCEEcCCCCC---EEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         25 HTLIFFFHFAF-CR-PQVIWYKETLKLDTTER---RIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        25 ~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~---~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.|.|.+.+ . |. ..+.|++++..+..+..   ......+.   ...|.+......+...|.|.+...
T Consensus         2 ~~L~C~a~g-f~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSG-FYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEe-EeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            578999998 6 44 48899999986443211   11111121   123455444445667899998764

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.62  E-value=0.0014  Score=32.27  Aligned_cols=62  Identities=24%  Similarity=0.330  Sum_probs=36.8

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcEE---EEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRRH---TLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .++...|.|.+.+ +.+.  .+.|.++|..+..+...   .....+...   .|.+.   ..+...|.|.+...
T Consensus        14 ~~~~~tL~C~a~g-FyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDN-FFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEE-EECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            3555799999999 7544  67899999876543111   111112121   23333   33455899998864

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA02633 hypothetical protein; Provisional

Probab=97.60  E-value=0.00037  Score=31.33  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=28.7

Q ss_pred             EEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         65 TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        65 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      .|.+.++..+|+|.|.|...|..-+...++.+++.
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            58889999999999999999876666667777643

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.56  E-value=0.0017  Score=31.04  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEE---EcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIME---TRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~---~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++.+.|.|.+.+ +.+.  .+.|++++..+.........   ..+...   .+.+.   ..+...|.|.+....
T Consensus         7 ~~~~~~L~C~v~~-f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSG-FYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEE-EBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEE-EECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            4788999999998 5433  68899999887654322111   122222   23333   344558999988654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.56  E-value=0.0019  Score=31.72  Aligned_cols=64  Identities=16%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .|....|.|.+.+ +.++  .+.|.++|..+. +...   .....+.........+...+...|.|.+...
T Consensus        14 ~g~~~~L~C~a~g-FyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          14 NGKPNVLNCYVTG-FHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCCceEEEEEEEE-EeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            4556689999999 7554  678999998876 3211   1111222222223333445666899999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.40  E-value=0.0013  Score=30.05  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ...|..+++.|+... ..   +.|.+++..+.....          .+.+.+-. ++.|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~-~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSG-DD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCC-CC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            346889999998655 22   899999855554221          12222222 6789999988643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.39  E-value=0.0035  Score=31.17  Aligned_cols=66  Identities=14%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC---CEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE---RRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~---~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++.+.|.|.+.+ ..+  ..+.|++++..+..+.   ......++...   .|.+......+...|.|.+....
T Consensus        16 ~~~~~~L~C~~~g-fyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLIND-FYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEe-EECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            4677899999998 543  4789999998875321   11111122222   34443333334568999988653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.33  E-value=0.002  Score=32.19  Aligned_cols=65  Identities=14%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEE--EEE----cCcE---EEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRI--MET----RGRR---HTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~--~~~----~~~~---~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+..++|.|.+.+ +.++  .+.|++++..+.......  ...    .+..   ..|.+..-...+...|.|.+...
T Consensus        15 ~~~~~tL~C~a~g-FyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~   90 (102)
T cd05768          15 LQETATLTCLVKG-FSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE   90 (102)
T ss_pred             cCCceEEEEEEee-EeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence            4678999999999 7554  568999998765321111  000    1211   13444332223445799998865

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG3515|consensus

Probab=97.25  E-value=0.00067  Score=44.56  Aligned_cols=78  Identities=19%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ..+..........+..|+.+.|.|.+.+..|...++|++.+..+. . +....   ...+|......+...+.|.|.+.|
T Consensus         6 ~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~-~~~~~---~~~~~~~~~~~~~~~~~~~c~a~n   80 (741)
T KOG3515|consen    6 NVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-G-RYATI---ADPTLVTTGDVRDTVAELNCRAFN   80 (741)
T ss_pred             CCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-c-ccccc---cCCceeeecchhhhhhhhhhhhcc
Confidence            334444334444778999999999999834567899999876544 1 11111   122456666666666778888777


Q ss_pred             CCC
Q psy17205         86 SMG   88 (106)
Q Consensus        86 ~~~   88 (106)
                      ..+
T Consensus        81 s~~   83 (741)
T KOG3515|consen   81 SVG   83 (741)
T ss_pred             ccc
Confidence            633

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.07  E-value=0.0094  Score=29.34  Aligned_cols=66  Identities=11%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC---CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE---RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~---~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ....+.|.|.+.+ +.+  ..+.|.+++..+....   .......+.   ...|.+..-...+...|.|.+....
T Consensus        13 ~~~~~~L~C~a~g-FyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISG-YTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEe-EECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            3456899999998 644  4779999998763321   111111121   1234444333335568999998653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.91  E-value=0.015  Score=28.93  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             eecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEE-E--E-cCcEEEEEEcccCCCCCE-eeEEEEEcC
Q psy17205         19 ETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIM-E--T-RGRRHTLVIRKVLFTDFG-NYSCVAENS   86 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~-~--~-~~~~~~l~~~~~~~~~~g-~y~C~~~~~   86 (106)
                      +..|..+++.|.+.+..|.  ..+.|++++..+........ .  . ......+++... +.|.| +|.|.+.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            4689999999999873444  46889887665554321110 0  0 011122333332 55666 899988743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.66  E-value=0.028  Score=28.76  Aligned_cols=70  Identities=11%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC---EEEEEc-Cc---EEEEEEcccCCCC-CEeeEEEEEcCCCcc
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER---RIMETR-GR---RHTLVIRKVLFTD-FGNYSCVAENSMGKT   90 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~---~~~~~~-~~---~~~l~~~~~~~~~-~g~y~C~~~~~~~~~   90 (106)
                      .+..+.|.|.+.+ +.+.  .+.|.+++..+..+..   .....+ +.   ...|.+...+..+ ...|.|.+.......
T Consensus        17 ~~~~~tL~Cla~g-FyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          17 NKRKATLVCLATG-FYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             cCCCcEEEEEEEe-EeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            4567899999998 6444  7899999987764321   111111 11   2234555433323 457999998654333


Q ss_pred             e
Q psy17205         91 R   91 (106)
Q Consensus        91 ~   91 (106)
                      .
T Consensus        96 ~   96 (115)
T cd05769          96 T   96 (115)
T ss_pred             c
Confidence            3

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.59  E-value=0.028  Score=27.81  Aligned_cols=31  Identities=13%  Similarity=0.156  Sum_probs=23.3

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTT   52 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~   52 (106)
                      .+...+|.|.+.+ +.++  .+.|.++|..+..+
T Consensus        15 ~~~~~tL~C~a~g-FyP~~I~v~W~kng~~~~~~   47 (96)
T cd07697          15 KQGQGIYLCLLEN-FFPDVIQVHWREGNSPSILG   47 (96)
T ss_pred             cCCCEEEEEEEEE-EeCCCeEEEEEECCEECcCC
Confidence            3556899999999 6554  56899999876543

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>KOG1480|consensus

Probab=96.52  E-value=0.00064  Score=44.65  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=54.4

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .+....+..+..+++.|...-+.|...+.|++++..+++..++....   .+.+.+..+...|.|+|+|.+.|..+...
T Consensus       135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~  210 (909)
T KOG1480|consen  135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRK  210 (909)
T ss_pred             ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhcccc
Confidence            33344555677778887665426777889999998777754433322   33688889999999999999999876654

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.43  E-value=0.037  Score=27.35  Aligned_cols=68  Identities=9%  Similarity=0.097  Sum_probs=37.0

Q ss_pred             eecCCeEEEEEEEeecC-CCC--eEEEeeCCEEc-CCC-CCEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP--QVIWYKETLKL-DTT-ERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p--~~~w~~~~~~l-~~~-~~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +..++..+|.|.+.+ + .++  .+.|.+++... ... .......++...   .+.+..-...+.-.|.|.+....
T Consensus        11 l~~~~~~tLtC~v~g-f~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTN-LTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeC-CCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            345788999999999 8 333  67899986422 111 011111112122   23333322223447999988753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=96.41  E-value=0.02  Score=32.32  Aligned_cols=72  Identities=18%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCE-EcC----------C--------CCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETL-KLD----------T--------TERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-~l~----------~--------~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      +....++.+.|.|....+.-..+..|..+.. .+.          .        .........+..++|++.+++.+..|
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G  113 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG  113 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence            5667799999999865422334567876431 111          0        01122333456778999999999999


Q ss_pred             eeEEEEEcCCC
Q psy17205         78 NYSCVAENSMG   88 (106)
Q Consensus        78 ~y~C~~~~~~~   88 (106)
                      -|.|.+....+
T Consensus       114 CYtc~~ks~~~  124 (251)
T PHA02982        114 CFTCEAKDAEG  124 (251)
T ss_pred             ceEEEEecCCC
Confidence            99999987543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.33  E-value=0.051  Score=27.85  Aligned_cols=68  Identities=9%  Similarity=0.116  Sum_probs=43.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCC---CeEEEeeCCE-E-------------cC-CCCCEEEE--EcCcEEEEEEcccCCCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCR---PQVIWYKETL-K-------------LD-TTERRIME--TRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~-~-------------l~-~~~~~~~~--~~~~~~~l~~~~~~~~~   75 (106)
                      ...+..+..+.|.|...+ .-.   -.+.|+|... .             .. ...++...  ...+...|.+.+++.+|
T Consensus         7 ~~lv~p~~sv~LsC~~sg-~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           7 PVLASSNGAASLVCEYTY-NGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CeEEcCCCCEEEEEEecC-CccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            355667888999998866 322   3566765320 1             00 11222222  23456689999999999


Q ss_pred             CEeeEEEEE
Q psy17205         76 FGNYSCVAE   84 (106)
Q Consensus        76 ~g~y~C~~~   84 (106)
                      .+.|.|...
T Consensus        86 Ta~Y~Ca~e   94 (115)
T cd05721          86 TDIYFCKIE   94 (115)
T ss_pred             CeEEEEEee
Confidence            999999654

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.22  E-value=0.051  Score=26.80  Aligned_cols=65  Identities=12%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC---EEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER---RIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~---~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++.+.|.|.+.+ +.+.  .+.|.+++.. ..+..   ......+...   .|.+....-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~g-FyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATG-FLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEee-EECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            3556899999999 6543  6789999986 32210   0111112222   23433322112456999988753

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.13  E-value=0.06  Score=26.74  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=40.8

Q ss_pred             EEeecCCeEEE-EEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTL-IFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~-~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.+ .|.+.++.|.+.+.|+.+..... ........++.   ...+.+......|...+.|.+....-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            45567777777 89887768999999997632111 10111111111   11344443444466689999987643

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.08  E-value=0.021  Score=33.25  Aligned_cols=49  Identities=16%  Similarity=0.349  Sum_probs=35.6

Q ss_pred             CCCCeEEEeeCC-EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         35 FCRPQVIWYKET-LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        35 ~p~p~~~w~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ...|...|...+ ..+.......+...+   .|.+.+....++|.|.|.....
T Consensus        10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence            357889998654 445544455555444   6999999999999999998754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.84  E-value=0.1  Score=27.37  Aligned_cols=78  Identities=15%  Similarity=0.157  Sum_probs=42.7

Q ss_pred             EeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcC---CCCCEEEE----------EcCcEEEEEEcccCCCCCEee
Q psy17205         18 IETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLD---TTERRIME----------TRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~---~~~~~~~~----------~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      .....+++.+.|.... .     ....+.|..++..+-   ...+....          ...+..+|.+...+.- .|+|
T Consensus        23 ~t~CN~tV~IPC~v~n-~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnY  100 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNN-LEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNY  100 (130)
T ss_dssp             E-TT-SEEEE--BBSS----SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEE
T ss_pred             EEecCCCEEEEeEecc-ccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccce
Confidence            3445889999998854 2     234689988876432   11111100          0123445777765544 7999


Q ss_pred             EEEEEcCCCcceEEEEEE
Q psy17205         80 SCVAENSMGKTRQYLELS   97 (106)
Q Consensus        80 ~C~~~~~~~~~~~~~~l~   97 (106)
                      .|-+.....+....+.|.
T Consensus       101 TCeVt~~~~ege~~i~Lk  118 (130)
T PF08204_consen  101 TCEVTELSREGETTIELK  118 (130)
T ss_dssp             EEEEEETTEEEEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEE
Confidence            999998776666666665

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.46  E-value=0.13  Score=25.65  Aligned_cols=64  Identities=11%  Similarity=0.100  Sum_probs=36.2

Q ss_pred             cCCeEEEEEEEeecCC-C--CeEEEeeCCEEcCCC-CCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFC-R--PQVIWYKETLKLDTT-ERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p-~--p~~~w~~~~~~l~~~-~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+..+.+.|.+.+ +. +  ..+.|.+++.. ... .......++.   ...|.+..-.-.....|.|.+...
T Consensus        18 ~~~~atLtClV~~-f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~   88 (99)
T cd04986          18 LGSSASLTCTLSG-LRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHP   88 (99)
T ss_pred             cCCccEEEEEEec-cCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECC
Confidence            5778999999999 66 2  37889998754 110 0000111121   223444433333445699998865

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03042 CD47-like protein; Provisional

Probab=94.54  E-value=0.53  Score=27.91  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             eecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         19 ETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ....+++.+.|.... .     -.-++.|..++..+-....      ...+++++...+. -.|+|+|-+.+.+.+....
T Consensus        28 T~CN~TV~IpC~v~n-~~~~ni~~~~V~Wkf~~~~If~~n~------tn~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~   99 (286)
T PHA03042         28 TTCNKTIVIVCNLNL-LIYYNISNIHINWKFNNKVIFKKNN------TNTSSLKFNFSKN-LSGNYTCEAINKFNKIKNT   99 (286)
T ss_pred             EecCceEEEEeecCC-hhhcCccceEEEEEeCCeeEEEecC------CcceEEEEecccc-CCCceeEEEeecccCccEE
Confidence            346888999998866 3     2457999888754322111      1123566555443 4699999999876655555


Q ss_pred             EEEE
Q psy17205         94 LELS   97 (106)
Q Consensus        94 ~~l~   97 (106)
                      +.++
T Consensus       100 IeLk  103 (286)
T PHA03042        100 IELQ  103 (286)
T ss_pred             EEEE
Confidence            5444

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.42  E-value=0.22  Score=23.07  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ...+.+.|...     -.+.|++ |..+....         ...+-+-.....-.|.|.|...+
T Consensus         6 ~~~V~L~C~~~-----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA-----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC-----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            45678889542     3589999 44333211         11344444445567999998766

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG4597|consensus

Probab=93.29  E-value=0.26  Score=31.51  Aligned_cols=79  Identities=16%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEee---CCEE-cCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYK---ETLK-LDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~---~~~~-l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+-++++..+.|-..| .+.+.+.|.+   +... +... ......  -.....|.|-+....|.|-|.|.+.+..|..
T Consensus       206 w~vg~wetcS~tCg~~G-~q~r~V~c~qv~anr~~vv~~~-nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQG-RQYRVVTCEQVFANRENVVMRP-NQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL  283 (560)
T ss_pred             hhcccchhhcccccccC-CcCceeeeehhhccccceeecC-ccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence            44557888899999999 9999999953   2211 1111 000000  0123358888888999999999999999888


Q ss_pred             eEEEEEE
Q psy17205         91 RQYLELS   97 (106)
Q Consensus        91 ~~~~~l~   97 (106)
                      +..+.+.
T Consensus       284 ~rdv~c~  290 (560)
T KOG4597|consen  284 RRDVPCS  290 (560)
T ss_pred             eccceee
Confidence            8776655

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=92.63  E-value=0.64  Score=22.72  Aligned_cols=65  Identities=11%  Similarity=0.114  Sum_probs=39.8

Q ss_pred             eEEeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ...+..|+.++..|.... .     ....+.|..++..++.. ++...... ....++.+......-.|-|..
T Consensus        12 ~pvv~lGS~vtasC~l~~-~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~~-~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   12 SPVVSLGSNVTASCVLKQ-NCSHSVNASQIVWKLNGEKIPGS-QYRVINDT-VSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSEEETTS-EEEEEEE-C-CCHCT-STTCEEEECSSCESTCG-CEEEESTT-EEEEEESS--SSEEEEEEEEE
T ss_pred             CCEEeCCCCEEEEEEEEC-CCCCCcccceEEEEECCEECChh-HcceeCCe-EEEEEEccCCCCCceEEEEEE
Confidence            345679999999998875 3     34578999888755554 44443333 356777776655545566653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG3515|consensus

Probab=92.30  E-value=0.9  Score=30.91  Aligned_cols=70  Identities=19%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             EEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCC--CEEEE---Ec---CcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         17 IIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTE--RRIME---TR---GRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~--~~~~~---~~---~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .....+..+++.|... ++.|.+.+.|..+........  .....   ..   .....+++......+.|+|.|.+.+.
T Consensus       107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            4455678889999544 336778999998875543221  01000   00   11234667777788999999999874

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=89.10  E-value=3.8  Score=25.39  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=17.1

Q ss_pred             eEEEEEEEeecCCCC--eEEEeeC
Q psy17205         24 RHTLIFFFHFAFCRP--QVIWYKE   45 (106)
Q Consensus        24 ~~~~~c~~~~~~p~p--~~~w~~~   45 (106)
                      .+.|.|.+.| +.+.  .+.|.++
T Consensus       216 ~~tL~C~A~G-FYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDS-HYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEe-EeCCccEEEEEec
Confidence            4799999999 7655  5679998

>PHA03052 Hypothetical protein; Provisional

Probab=87.49  E-value=1.9  Score=19.99  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=26.6

Q ss_pred             CeEEeecCCeEEEEEEEeecC--CCCeEEEeeCCEEc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAF--CRPQVIWYKETLKL   49 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~~~l   49 (106)
                      ..+.+..|+++.+.|.+.-+.  ..+.+.|..|+..+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            557788999999999997512  23567888888766

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=84.73  E-value=3.8  Score=20.90  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             EEEEEEcccCCCCCEeeEEEEEcCCCcceE-EEEEE
Q psy17205         63 RHTLVIRKVLFTDFGNYSCVAENSMGKTRQ-YLELS   97 (106)
Q Consensus        63 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~   97 (106)
                      +.+|.|..++..|+|.|..-+.+..|.... .+.+.
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs  105 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS  105 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence            447999999999999999999888777643 45544

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03376 BARF1; Provisional

Probab=83.48  E-value=1.1  Score=25.35  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=20.1

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETL   47 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~   47 (106)
                      .+...+.|...+ +|.|+++|..++.
T Consensus       139 ~~~~~i~C~sgg-fP~P~~~Wle~~~  163 (221)
T PHA03376        139 FSVLTVTCTVNA-FPHPHVQWLMPEG  163 (221)
T ss_pred             CCeeEEEEecCC-cCCchheeccccC
Confidence            556788999666 9999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		1e-05
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		4e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		4e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		5e-04

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 39 QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
          ++ WYKE  KL +     M+ +    +LVI KV  +D G Y+C AENS+G
Sbjct: 36 RIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVG 85

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 38  PQVIWYKETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
           P + W K   +    E RI  ++ R ++ +LV+  V+ +D GNY+CV EN  G  RQ   
Sbjct: 153 PSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211
Query: 96  L 96
           L
Sbjct: 212 L 212

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
          P V W ++   L T+ R  + T   + T  I  V  +D GNYS V ENS GK
Sbjct: 44 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 95

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
          P V W ++   L T+ R  + T   + T  I  V  +D GNYS V ENS GK
Sbjct: 38 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-16
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	2e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-15
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	6e-15
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-15
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-14
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-14
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-14
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	4e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-14
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	5e-14
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	6e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	6e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-14
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-13
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-13
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-12
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-13
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-12
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-12
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-09
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-07
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-12
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-12
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-12
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-11
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-11
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	9e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-08
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	7e-11
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-11
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-10
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-10
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-10
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-10
2ens_A	96	Advanced glycosylation END product-specific recept	3e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-10
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	8e-10
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	9e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-09
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	4e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-09
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-09
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-06
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-06
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-08
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-08
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	8e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	4e-05
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-05
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	8e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	8e-05
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-04
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	6e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	9e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-04

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 65.1 bits (159), Expect = 2e-15
 Identities = 21/55 (38%), Positives = 27/55 (49%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P V W ++   L T+ R  + T   + T  I  V  +D GNYS V ENS GK  
Sbjct: 43 VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 64.7 bits (158), Expect = 3e-15
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
               W K   ++  +E   +E       L I        G Y+ + EN +G  +  + L
Sbjct: 36 PITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 63.9 bits (156), Expect = 6e-15
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            +V WY   ++L  + +          TL I      D G Y  V  N  G+  
Sbjct: 37 TAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEAS 91

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.6 bits (155), Expect = 7e-15
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             +W      + ++ R     +GR++ LV+R+   +D G           K  
Sbjct: 39 DPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 63.2 bits (154), Expect = 1e-14
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
              WYK  +++  ++R  +   GR H LVI  V   D G+Y+ V +         L 
Sbjct: 37 VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 63.2 bits (154), Expect = 1e-14
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
           P++ W +  E ++ +T    + +    R TL+I+ V   D G Y+  A N  G T
Sbjct: 44 PPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVT 99

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.1 bits (159), Expect = 1e-14
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P + WY+   +L  + +  M + GR HTL +      D G Y+C+A N +G+     +L
Sbjct: 36 LPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95

Query: 97 S 97
           
Sbjct: 96 L 96

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF-TDFGNYSCVAENSMGKTRQYLE 95
            P + W+     L  +E   +E       LV++ V   T  G Y     N  G     L+
Sbjct: 132 VPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD 191

Query: 96  LS 97
           + 
Sbjct: 192 VE 193

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 62.7 bits (153), Expect = 2e-14
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
           P+  WYK  +K++ ++R            LVIR V   D  +    A N  G+T
Sbjct: 34 DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET 88

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.8 bits (153), Expect = 2e-14
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P + W  +   +      +++      H+L+I  V   D G Y+C+A N  G+  
Sbjct: 38 TPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNS 93

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          +P V W +    +   +RR   E  G    L I      D G Y+C A N  G  +
Sbjct: 34 KPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ 89

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.4 bits (152), Expect = 2e-14
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          +P++ W+K  + +   +    I        +L        D GNY+ +A N  G+  
Sbjct: 37 KPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 66.0 bits (161), Expect = 3e-14
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             QV W+K+  +L + ++  + +     ++ I  V   D G Y C A N +G   
Sbjct: 413 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDT 467

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 61.7 bits (150), Expect = 9e-13
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            ++ W K+  ++       M       TL + KV   D G Y+C A N  GK     +L 
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            QV WYK+   L               TL I +   +  G Y+C A N +G      +L+
Sbjct: 131 LQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            ++ WYKE  KL +     M+ +    +LVI KV  +D G Y+C AENS+G       L
Sbjct: 34 EIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93

Query: 97 S 97
           
Sbjct: 94 V 94

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             +V+WYK+  ++  + +  M        L +  +   D G+Y+C A N+ G       L
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379

Query: 97  S 97
            
Sbjct: 380 K 380

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 38  PQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             V W+K+  ++   ++   +       TL   +    + G Y+C  +N  G    +  L
Sbjct: 507 ISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566

Query: 97  S 97
           S
Sbjct: 567 S 567

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 61.5 bits (150), Expect = 3e-14
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
          RP  IW K+   +    +  +        L I K   +D G Y+C  +NS G  
Sbjct: 35 RPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSV 88

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 61.6 bits (150), Expect = 4e-14
 Identities = 9/60 (15%), Positives = 19/60 (31%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P   W             +++ +    ++        D GNY    +N +G+     E+
Sbjct: 31 DPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 62.1 bits (151), Expect = 4e-14
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH----TLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
           P + W      L  ++   +E           L+  K    + GNY+ +A+N +G   Q
Sbjct: 34 PPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ 93

Query: 93 YLELS 97
           +   
Sbjct: 94 TINGH 98

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 61.2 bits (149), Expect = 4e-14
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           +V W +    +  + +  + T G RHTL +R+V   D G+Y+ +A +S  K  
Sbjct: 37 VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFD 90

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 61.7 bits (150), Expect = 4e-14
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           +V WYK+  KL ++ +  +E  G    LV+++    + G YSC A       R
Sbjct: 40 TEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 61.2 bits (149), Expect = 6e-14
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           +V WYK   ++  + + I E +G +  L I     TD   Y   A +    T 
Sbjct: 37 LEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.2 bits (149), Expect = 6e-14
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
              W K  L +  ++R  +  +GR H LVI   L  D G+Y    +         + +
Sbjct: 35 IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 63.2 bits (154), Expect = 6e-14
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P V +Y++  ++ ++    +   G  ++L+I +    D G YS  A NS+G+  
Sbjct: 132 TPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRAT 186

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
           P+V W++  + +   T     +     R  L I  V   + G YS  A N  G+     
Sbjct: 34 VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA 93

Query: 95 ELS 97
          EL 
Sbjct: 94 ELL 96

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.3 bits (149), Expect = 7e-14
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
              WYK+  K++ +E  +++  GR+H L++ +    D G + C  E  
Sbjct: 39 FPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV 87

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 60.8 bits (148), Expect = 8e-14
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
           P V WY     + + +  +++ +    H+L+   V  +D G Y+CVA+N  G+ 
Sbjct: 34 APDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEA 88

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 60.5 bits (147), Expect = 1e-13
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
          +P + W+     L+ ++    +     H      L +      + G+Y+ +A+N  GK  
Sbjct: 30 KPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE 89

Query: 92 QYLEL 96
          + +  
Sbjct: 90 KQISA 94

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 63.0 bits (153), Expect = 1e-13
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            +V W      +  ++R      G +  L I +    D G Y     +     ++ ++L
Sbjct: 32 DLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 91

Query: 97 SGK 99
          SG+
Sbjct: 92 SGQ 94

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            P+V W K    L  T+   +    GR     I  V   D G Y  V +N  G  
Sbjct: 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 200

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.5 bits (147), Expect = 1e-13
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           +V W K+  ++  +   +++       LV+  V   D G Y C  ++      
Sbjct: 42 AEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.4 bits (147), Expect = 1e-13
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            V W K+   +  +++  +   G    LVIR     D G Y+C  E S     
Sbjct: 37 TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTAS 90

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 15/82 (18%), Positives = 30/82 (36%)

Query: 18  IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG 77
           I++      L  F  +     +V W      +  ++R      G +  L I +    D G
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 177

Query: 78  NYSCVAENSMGKTRQYLELSGK 99
            Y     +     ++ ++LSG+
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQ 199

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 61.5 bits (149), Expect = 9e-13
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P+V W K    L + +   +    GR     I  V   D G Y  V +N  G       
Sbjct: 251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFT 310

Query: 96  LS 97
           +S
Sbjct: 311 VS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 59.2 bits (143), Expect = 6e-12
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             ++WYK+  ++   E+   +      TL+I +    D G Y  + ++  GK +  L+L 
Sbjct: 37  THIVWYKDEREISVDEKHDFKDGI--CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 94

Query: 98  GKYP 101
            +  
Sbjct: 95  DEAF 98

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            P+V+W+K+   +  +   +I        +L I +V   D   Y+C A NS+G+ 
Sbjct: 70  DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA 124

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
          +P V WY+  + +  D  + RI E +G  H L+I  V   D   Y   A N  G      
Sbjct: 33 KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92

Query: 95 ELS 97
           L 
Sbjct: 93 SLE 95

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P + W K    +D     +++ TR     +    V   D G Y   A+N  G  ++ +E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192

Query: 96  LS 97
           L 
Sbjct: 193 LD 194

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 59.8 bits (145), Expect = 2e-13
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P + W K   +     R    + R +  +L++  V+ +D GNY+CV EN  G   
Sbjct: 37 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 92

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           +P V W K    L    R  +   G   +L I  V   D G Y CVA+NS+G 
Sbjct: 129 KPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGT 178

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
          +P++ W +  + +   + R    R     L I  V  +D G Y C A N +G   +
Sbjct: 36 QPEISWTRNKILIKLFDTRY-SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVE 90

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 58.8 bits (143), Expect = 3e-13
 Identities = 9/54 (16%), Positives = 17/54 (31%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
              W  +   L  +    +   G++H L++        G  S  A N+     
Sbjct: 34 VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAAN 87

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.9 bits (143), Expect = 4e-13
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           QV WY    +L+ +E+  +        L ++ +   D G Y C   N  G+   Y EL 
Sbjct: 32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             QV W+K+  +L + ++  + +     ++ I  V   D G Y C A N +G       +
Sbjct: 221 PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280

Query: 97  S 97
           +
Sbjct: 281 T 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             +V+WYK+  ++  + +  M        L +  +   D G+Y+C A N+ G       L
Sbjct: 128 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187

Query: 97  S 97
            
Sbjct: 188 K 188

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           ++ W K+  ++       M       TL + KV   D G Y+C A N  GK     +L 
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
           +  W K+ +  + + R  +E++G +  +  + +   D G YSC   ++ G    Y
Sbjct: 32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY 87

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             ++WYK+  ++   E+   +      TL+I +    D G Y  + ++  GK +  L+L 
Sbjct: 252 THIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309

Query: 98  GK 99
            +
Sbjct: 310 DE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 38  PQVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            +V +     ++    +  M          + + K+   D G Y+   ++        + 
Sbjct: 138 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 197

Query: 96  LSGKYPNAQEP 106
           L G      + 
Sbjct: 198 LVGDVFKKLQK 208

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             V W K  L+L  + +      G    L I  +   D   Y+C    +  + +
Sbjct: 36 AATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQAQSRAQ 90

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          PQ++W+K+   L      +++       L IR+V   D G Y+C A + +G  +
Sbjct: 40 PQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAK 91

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVAENSMGK 89
             +  W+K+ + + T  +         +        LV   +  +D G YSC A N  G 
Sbjct: 137 PSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196

Query: 90  TRQYLELS 97
                 + 
Sbjct: 197 PMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 37 RPQVIWYKE---TLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
           P+V W  +   T +L     +I  +   R       +  + V   D G Y+C+     G
Sbjct: 33 SPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG 92

Query: 89 KTRQ 92
           +  
Sbjct: 93 NSYG 96

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P + W++    ++  E+ I++       L +R ++ +D G Y C A N  G+  +   L
Sbjct: 127 EPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184

Query: 97  S 97
            
Sbjct: 185 Q 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
           P V W     ++ T            + L I  +  +D G Y C       
Sbjct: 31 APAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEAR 81

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           RPQV+W K    LDT  R  + T        +R+   +D G Y    +    K
Sbjct: 53  RPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 38 PQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           +V W K   ++  +  + I E+ G + TL I +    D   Y CV       T 
Sbjct: 45 AEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 37  RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
           +P V WY++   +  D  + RI E +G  H L+I  V   D   Y   A N  G      
Sbjct: 33  KPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTA 92

Query: 95  ELSGKYP 101
            L  + P
Sbjct: 93  SLEVEVP 99

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 56.7 bits (137), Expect = 4e-11
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P + W K    +D     +++ TR     +    V   D G Y   A+N  G  ++ +E
Sbjct: 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192

Query: 96  L 96
           L
Sbjct: 193 L 193

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P + W K   +     R   ++ R ++ +LV+  V+ +D GNY+CV EN  G  RQ   
Sbjct: 44  TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103

Query: 96  LS 97
           L 
Sbjct: 104 LD 105

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 37  RPQVIWYKE------------TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE 84
           +P + W K             T  +   +  I E+      L +  V   D G Y C A 
Sbjct: 143 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT 202

Query: 85  NSMGKTRQYLELSGKYPNAQEP 106
           N +G   +   LS   P A E 
Sbjct: 203 NFIGVAEKAFWLSVHGPRAAEE 224

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 56.2 bits (136), Expect = 4e-12
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P + W KE       + R         TL I+ +  +D G Y+CVA +S G+T     L
Sbjct: 37 LPVISWLKEGFTFPGRDPRATIQEQ--GTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94

Query: 97 S 97
           
Sbjct: 95 D 95

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 56.6 bits (137), Expect = 5e-12
 Identities = 14/55 (25%), Positives = 18/55 (32%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             V W K    L    R  ++  G R  L I  +   D G YSC+         
Sbjct: 35 VAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSAT 89

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 55.8 bits (135), Expect = 7e-12
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P++ W      +                L I+  L  D G Y+C+AEN++G+  
Sbjct: 40 VPRITWLLNGQPIQYARSTC---EAGVAELHIQDALPEDHGTYTCLAENALGQVS 91

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P ++W K+ + + T + RI +       L IR     D G Y+C+A    G+  
Sbjct: 37 VPTILWRKDGVLVSTQDSRIKQLEN--GVLQIRYAKLGDTGRYTCIASTPSGEAT 89

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 57.9 bits (140), Expect = 8e-12
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P + W K   K+D +  R     G    L I      D G Y CVAENSMG   
Sbjct: 139 TPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 37 RPQVIWYKETLKLDTTERR--IMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQ 92
           P ++W K   K+  T+ R  ++E  G    L I  V    D   Y CVAEN +G    
Sbjct: 35 PPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVS 93

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 58.0 bits (140), Expect = 9e-12
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P + W K   +     R    + R +  +L++  V+ +D GNY+CV EN  G       
Sbjct: 48  MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 107

Query: 96  LS 97
           L 
Sbjct: 108 LD 109

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 47.2 bits (112), Expect = 8e-08
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 11/67 (16%)

Query: 37  RPQVIWYKE------TLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAEN 85
           +P + W K           D      +      +      L +  V   D G Y C   N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206

Query: 86  SMGKTRQ 92
            +G+  Q
Sbjct: 207 YIGQANQ 213

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 55.4 bits (134), Expect = 1e-11
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 38 PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            V W+K  E +      R  +   G++H L+I      D   YS +        +
Sbjct: 36 ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAK 91

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
               +W  +   L+      ++ RG   ++VI K+  T  G Y    ++          +
Sbjct: 77  NISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 97  S 97
           S
Sbjct: 136 S 136

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           + +  W          ++ +       +++          G Y   AEN   +  +   L
Sbjct: 355 QIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410

Query: 97  SGKYP 101
           + +  
Sbjct: 411 NIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH------TLVIRKVLFTDFGNYSCVAENSMGKT 90
              + W  E   L+      M T              +  V   D G Y+C +     ++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 38  PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
           P V W       +    E   +  +      V+ ++  TD     C A N +G+    L 
Sbjct: 169 PIVEWVLCDSQGESCKEESPAVVKKE---EKVLHELFGTD---IRCCARNELGRECTRLF 222

Query: 96  LSGKYPNAQEP 106
                   Q  
Sbjct: 223 TIDLNQTPQTT 233

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P + W K+   LD  + RI    G    L+I     +D G Y CV  N +G+  
Sbjct: 141 EPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 37 RPQVIWYKETLKLDTTERRIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           P + WYK   +++T +      R            +V  +    D G Y CVA N +G+
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97

Query: 90 TR 91
            
Sbjct: 98 AV 99

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             ++WYK+  ++   E+   +      TL+I +    D G Y  + ++  GK +  L+L 
Sbjct: 147 THIVWYKDEREISVDEKHDFKDG--ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 204

Query: 98  GK 99
            +
Sbjct: 205 DE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 37  RPQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
             +V +     ++    +  M          + + K+   D G Y+   ++        +
Sbjct: 32  NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91

Query: 95  ELSGKYPNAQE 105
            L G      +
Sbjct: 92  VLVGDVFKKLQ 102

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.2 bits (140), Expect = 1e-11
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
               +W  +   L+      ++ RG   ++VI K+  T  G Y    ++          +
Sbjct: 77  NISCLWVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 97  SGKYP 101
           S +  
Sbjct: 136 SIRNT 140

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 53.5 bits (128), Expect = 6e-10
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           + +  W          ++ +       +++          G Y   AEN   +  +   L
Sbjct: 355 QIRCTWTFSRKSFPCEQKGLDN----GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410

Query: 97  SGKYP 101
           + +  
Sbjct: 411 NIRRK 415

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 51.2 bits (122), Expect = 4e-09
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH------TLVIRKVLFTDFGNYSCVAENSMGKT 90
              + W  E   L+      M T              +  V   D G Y+C +     ++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 13/83 (15%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHT-----------LVIRKVLFTDFGNYSCVAEN 85
            P   W K + K       I E    R               +            C A N
Sbjct: 436 LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYN 495

Query: 86  SMGKTRQ--YLELSGKYPNAQEP 106
           S+G + +   L   G +P  Q+ 
Sbjct: 496 SLGTSCETILLNSPGPFPFIQDG 518

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            + W ++ ++L  + R    TR     + ++  +  D G Y+CV  +  G    Y  ++
Sbjct: 32 QSINWLRDGVQLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 14/49 (28%), Positives = 20/49 (40%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
            V W+K    L   +R  +   G R  L IR ++  D G Y C+    
Sbjct: 47 APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKE 95

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P + W++    ++  E+ I++       L +R ++ +D G Y C A N  G+  
Sbjct: 223 EPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDE 275

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 38 PQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            + WY  +  K+ +T+R +++  G R  L I      D G Y C A ++ G+T+
Sbjct: 33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 87

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 37  RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
            P V W    E +   +  R  M        L I  +  +D G Y C       
Sbjct: 127 APAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVEAR 177

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 38  PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
             + W++  + L         +        L +      DFGNY+C A N +G+      
Sbjct: 48  ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107

Query: 96  LS 97
           L 
Sbjct: 108 LV 109

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 54.3 bits (131), Expect = 3e-11
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 37 RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
             V W+ +   L   E   I    G  H L +R++   D G     A + 
Sbjct: 42 YEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ 92

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 37  RPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
            P + W K   +     R   ++ R ++ +LV+  V+ +D GNY+CV EN  G  RQ   
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 211

Query: 96  LS 97
           L 
Sbjct: 212 LD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
               +W K+   L  +ER ++        L +      D G YSC    +      +   
Sbjct: 38  MGPTVWVKDGTGLVPSERVLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93

Query: 97  SGKYPNAQEP 106
               P++ + 
Sbjct: 94  VTDAPSSGDD 103

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 37  RPQVIWYKET------LKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVA 83
           +P + W K        +  D T    +      +        L +  V F D G Y+C+A
Sbjct: 251 QPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLA 310

Query: 84  ENSMGKTRQ 92
            NS+G +  
Sbjct: 311 GNSIGFSHH 319

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGR--RHTLVIRKVLFTDFGNYSCVAENSMG 88
           P + W K+   +   ++  +    +     L ++ V  +D G Y C  E+   
Sbjct: 31 EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE 84

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 44.0 bits (104), Expect = 9e-07
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 9/52 (17%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            ++W++ T K+                 V+     T    +SC A N  G  
Sbjct: 130 TIVWWRGTTKIGGPAPS---------PSVLNVTGVTQSTMFSCEAHNLKGLA 172

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P V W K    +  ++   +        L I  V+ +D G Y CVAEN  G  +   +L
Sbjct: 341 VPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397

Query: 97  S 97
            
Sbjct: 398 I 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P   W +    +    ++     G    L+I  V   D G Y+CV            EL
Sbjct: 250 PPSFTWLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAEL 307

Query: 97  S 97
           +
Sbjct: 308 T 308

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 37  RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
            P + W K  + L     + R++        L I ++   D G Y C A N   
Sbjct: 150 MPTIHWQKNQQDLNPIPGDSRVVVLPS--GALQISRLQPGDSGVYRCSARNPAS 201

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 38  PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFT-----DFGNYSCVAENSMGKT 90
           P + W K    L L   +R+     G   +L+I+ +L +     D G Y C A      +
Sbjct: 52  PVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108

Query: 91  RQ 92
             
Sbjct: 109 II 110

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 56.7 bits (136), Expect = 6e-11
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           PQ++W+K+   L      +++   R   L IR+V   D G Y+C A + +G  +      
Sbjct: 696 PQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.4 bits (130), Expect = 4e-10
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P++ WYK  + L++            H L I +V   D GNY+ +  N + K +Q   +S
Sbjct: 360 PEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 36  CR----PQVIWYKETLKLDTTERRIMETRGRRH-TLVIRKVLFTDFGNYSCVAENSMGKT 90
           CR       +W       +        + G    TL I KV+  D G Y C    +   +
Sbjct: 53  CRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLAS 112

Query: 91  RQYLELS 97
             Y+ + 
Sbjct: 113 VIYVYVQ 119

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRH----------TLVIRKVLFTDFGNYSCVAENSM 87
             + +  E        ++++    +            TL I  V  +D G Y+C A + +
Sbjct: 254 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 313

Query: 88  GKTRQYLEL 96
              +    +
Sbjct: 314 MTKKNSTFV 322

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 4e-06
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 1   VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
           + WY +  +    E     +    +    +         V  ++   K++  + +     
Sbjct: 456 IHWYWQLEEECANEPSQAVSVTNPYPCEEW-------RSVEDFQGGNKIEVNKNQFALIE 508

Query: 61  GRRHT-LVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           G+  T   +          Y C A N +G+  + +   
Sbjct: 509 GKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 20/81 (24%)

Query: 37  RPQVIWYKETLKLDTTE--------------------RRIMETRGRRHTLVIRKVLFTDF 76
              + WYK   +                              +      + ++     D 
Sbjct: 578 FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQ 637

Query: 77  GNYSCVAENSMGKTRQYLELS 97
           G+Y C+A++   K R  +   
Sbjct: 638 GDYVCLAQDRKTKKRHCVVRQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 6/54 (11%), Positives = 14/54 (25%), Gaps = 2/54 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             +       +      RI      +    I   + +  G   C A+ +    +
Sbjct: 159 VSLCARYPEKRFVPDGNRISWDS--KKGFTIPSYMISYAGMVFCEAKINDESYQ 210

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.5 bits (129), Expect = 7e-11
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 38 PQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
           QV+W K  ++L   +    R   +  G+RH L+   V+  D G Y  +    
Sbjct: 37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG 89

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGK 89
            P +IW K+ + LD  +        R        L+I  V   D GNY C+A+N +G 
Sbjct: 138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGT 195

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 37 RPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           P + W+K+   + T E++      +         ++     D G Y CVA+N +G+  
Sbjct: 38 EPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 55.9 bits (134), Expect = 8e-11
 Identities = 13/60 (21%), Positives = 20/60 (33%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            + WYK+  K   +  +       +  L        D G+Y CV  NS    R  +   
Sbjct: 36 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
            P++ WYK+   L          +     L++  V     GNY+C A  +  
Sbjct: 138 LPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYL 186

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRR------------HTLVIRKVLFTDF-GNYSCVA 83
                W      +D  +  + E                   L I ++    +   ++C A
Sbjct: 238 SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA 297

Query: 84  ENSMGKTRQYLEL 96
           +N+ G    Y++L
Sbjct: 298 KNTHGIDAAYIQL 310

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 55.6 bits (134), Expect = 9e-11
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
            P++ W+K+ L +D +       + R   L I     TD G Y CVA NS G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG 188

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 37 RPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTRQYL 94
          +P+V W K+  K+++     +E        L I+ +    D   Y CVA+NS+G+   + 
Sbjct: 35 KPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHA 94

Query: 95 ELS 97
          +L+
Sbjct: 95 KLT 97

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P V W +    L   +   +         V+      D  NY+CVA +S+G   
Sbjct: 234 MPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIE 282

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH--------TLVIRKVLFTDFGNYSCVAENSMG 88
             +  W+K+ + + T + +                  L+   V   D G Y C A+N  G
Sbjct: 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193

Query: 89  KTRQYLEL 96
              +    
Sbjct: 194 TAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 45.0 bits (106), Expect = 5e-07
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 37 RPQVIWYK---ETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
           P+V W      T  L     +I      R       +    V   D G Y+C+     G
Sbjct: 30 SPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG 89

Query: 89 KTR 91
          +  
Sbjct: 90 QNY 92

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH--TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
            P   WYK        +  ++  R ++   TL+I+  +  D G Y CV  NS+G      
Sbjct: 277 VPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 336

Query: 95  ELSGKYP 101
            L+   P
Sbjct: 337 VLTVTAP 343

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.6 bits (131), Expect = 3e-10
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P++ W  +  K+   +R  +      +      L I  V   D G Y C+A++ +G   
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517

Query: 92  QYLELS 97
              +L+
Sbjct: 518 HSAKLN 523

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKT 90
           +PQV W K         + + ++   R    TL +  +  T+ G Y C A N +G  
Sbjct: 743 KPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKT 90
             ++W ++   L    ++ +   G   TL+I  V   +D   Y+CVA+N  G +
Sbjct: 556 DSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYS 606

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK--TRQYL 94
              V W K+   +  +E            L I  V   D G Y C   N          L
Sbjct: 372 IKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

Query: 95  ELSGKYP 101
           +L G++ 
Sbjct: 422 KLGGRFD 428

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 37  RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDF------GNYSCVAENSMG 88
            P++IW +   T   D    R + + G    LV       D+        Y+C+A N  G
Sbjct: 68  MPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFG 124

Query: 89  KTR 91
              
Sbjct: 125 SII 127

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 39  QVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            + W  +   +             R   L I  V  +  GN++C A N  G  +
Sbjct: 651 NIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.8 bits (98), Expect = 7e-06
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 37  RPQVIWYKE-----TLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKT 90
              V W+ +         +   + ++   G    L IR+V   D + +Y C  ++ +   
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 226

Query: 91  RQ 92
            +
Sbjct: 227 TR 228

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 52.5 bits (126), Expect = 1e-10
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            + W ++ ++L  + R    TR     + +R  +  D G Y+CV  +  G    Y  ++
Sbjct: 38 QSINWLRDGVQLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 55.5 bits (133), Expect = 1e-10
 Identities = 12/61 (19%), Positives = 19/61 (31%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           R  + W+K                 +   L +   L  D G Y C   N+    +  +EL
Sbjct: 54  RINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113

Query: 97  S 97
            
Sbjct: 114 R 114

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             ++ WYK++L LD    + +  RG    L++  V   D G Y CV   +    +
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQ 207

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 14/73 (19%)

Query: 38  PQVIWYK---ETLKLDTTERRIMETRGRR----------HTLVIRKVLFTDFG-NYSCVA 83
             ++W+      ++      R+ E   +             L+   V   D   ++ CV 
Sbjct: 259 TTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV 318

Query: 84  ENSMGKTRQYLEL 96
            N++        +
Sbjct: 319 HNTLSFQTLRTTV 331

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P + W K    + +T             L I  +   D G Y C AEN  GK +    + 
Sbjct: 143 PDIRWRKVLEPMPSTAEISTS----GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 47.2 bits (112), Expect = 6e-08
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 37 RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
               W      + +   +RR +        L I  V  +D GNYSC   +       
Sbjct: 39 DLSYRWLLNEFPVFITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSV 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 52.3 bits (126), Expect = 1e-10
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
            V W      L   ++  +   G    LV+R +   D G YSC   + 
Sbjct: 37 APVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQ 85

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 37 RPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKV-LFTDFGNYSCVAENSMGKTRQYL 94
          RP+++W K+  K+      ++E   G    L I+ +    D   Y CVA N++G+     
Sbjct: 35 RPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVST 94

Query: 95 ELS 97
           L+
Sbjct: 95 RLT 97

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 37  RPQVIWYKETLKLDTTERRIMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            P++ W+K+ L +DT+       +        L I +   +D G Y CVA NS G  
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRR--HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
           P   WYK        +  ++  R ++   TL+I+  +  D G Y CV  NS+G       
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301

Query: 96  LS 97
           L+
Sbjct: 302 LT 303

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 10/53 (18%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
              V W K+   +  +E            L I  V   D G Y C   N    
Sbjct: 336 IKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRES 378

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 37 RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDF------GNYSCVAENSMG 88
           P++IW +   T   D    R + + G    LV       D+        Y+C+A N  G
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFG 89

Query: 89 KTR 91
             
Sbjct: 90 SII 92

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 37  RPQVIWYKE-----TLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKT 90
              V W+ +         +   + ++   G    L IR+V   D + +Y C  ++ +   
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 191

Query: 91  RQ 92
            +
Sbjct: 192 TR 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 37  RPQVIWYKETLKLDTTE-------RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
            P++ W +       TE       R  ++ +    +L I+ V  +D G Y C A + +G 
Sbjct: 29  IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88

Query: 90  TRQYLELSGKYP 101
            ++ + L  +Y 
Sbjct: 89  HQKSMYLDIEYA 100

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 53.3 bits (128), Expect = 9e-10
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 38  PQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
             + W +    L    T      + GR+  L I      DFG Y+C A N +G   Q   
Sbjct: 130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYI 189

Query: 96  L 96
           L
Sbjct: 190 L 190

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 51.6 bits (124), Expect = 3e-10
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
           PQ+ W K+ + L                L++ ++   D G YSCVA +S    +
Sbjct: 39 SPQIHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVATHSSHGPQ 84

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 53.7 bits (129), Expect = 5e-10
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P + WYK+   L + + +          L I  V   D G Y C+A N MG  R  + + 
Sbjct: 252 PDIAWYKKGGDLPSDKAKFENFNK---ALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 37  RPQVIWYK--ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
           +P V W    E L+                T++ R    +    Y C   N  G
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVAGD---TIIFRDTQISSRAVYQCNTSNEHG 391

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 47.6 bits (113), Expect = 9e-08
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTD-FGNYSCVAENSMGKTRQ 92
           P + W   +++  T ++R+ +       L    V+  D   +YSC A      T Q
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN--GDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 42.9 bits (101), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV----LFTDFGNYSCVAENSMGK 89
            P   W + +   +  +   +  R R  TLVI            G Y C A N  G 
Sbjct: 46  APSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 53.3 bits (128), Expect = 7e-10
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P V W+K+  +L  + + +    G  + L I +V   D G Y+  A+NS G   + + L
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 52.1 bits (125), Expect = 8e-10
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 3/56 (5%)

Query: 38 PQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            + W+    E L  +     ++       TL I      D G Y CV     G  
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P +IW  +   +   +          + L IR +  TD G Y C           + ++
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187

Query: 97  S 97
            
Sbjct: 188 Q 188

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.3 bits (125), Expect = 8e-10
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 38  PQVIWYKETLKLD------TTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKT 90
               WYK T   D      +  R  + +   R  L I  +    D G Y C   +S G  
Sbjct: 114 TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD 173

Query: 91  RQYLELSGKY 100
           +  + L  + 
Sbjct: 174 QAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 7/53 (13%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
              W K           + E          +      +G YSCV       T
Sbjct: 30 TGHRWLKG-------GVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGT 75

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.4 bits (128), Expect = 8e-10
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 38  PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
               ++K    +  +  +R     R     L+ +  L  D G Y+C  +N +GK 
Sbjct: 242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P V+W      L +  R  +        LVI+ V   D G Y C A N  G       +
Sbjct: 338 APNVVWSHNAKPL-SGGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 392

Query: 97  S 97
            
Sbjct: 393 Q 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
           +  W K+  +         + +  G   +LV  +   +D G+Y C AE   G
Sbjct: 37 VKYSWKKDGKSYNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAG 86

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 7/62 (11%)

Query: 38  PQVIWYKETLKLDTTERRIMETR----GRRHTLVIRKVLFTD---FGNYSCVAENSMGKT 90
           P + W K     D         R    G    L    V   D      Y C A+N+    
Sbjct: 131 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190

Query: 91  RQ 92
             
Sbjct: 191 EV 192

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 51.1 bits (122), Expect = 9e-10
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRG-------RRHTLVIRKVLFTDFGNYSCVAENSMGK 89
           P + W      L+ T     E          R   L + +    + GNY+ +A N  G+
Sbjct: 29 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88

Query: 90 TRQYLEL 96
              +  
Sbjct: 89 ASASIMA 95

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 53.0 bits (127), Expect = 9e-10
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIME--TRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
            P + W K+   ++  E    +         L IR V   D   Y C+AEN  G+    +
Sbjct: 225 EPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI 284

Query: 95  ELS 97
            L 
Sbjct: 285 HLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 38 PQVIWYKE-TLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT-RQY 93
            + W+     KL   ++RI          TL I      D G Y CV     G      
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92

Query: 94 LELS 97
          + + 
Sbjct: 93 VNVK 96

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P +IW  +   +   +          + L IR +  TD G Y C           + ++
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187

Query: 97  S 97
            
Sbjct: 188 Q 188

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P ++W +   K    + R  ++ G    L I      D G+Y CVAENS GK     +L+
Sbjct: 235 PTILWRRADGKPIARKARRHKSNG---ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
           +P   W K    L T +R  +E    + TL I  V  +D G Y CVAEN  G
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHG 371

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
                W           RR +        L I KV  +D GNY+CV  N++   + 
Sbjct: 132 ELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNTVTNHKV 185

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 37 RPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTR 91
          +P + W      +D   + R     G   +L+I     T D G Y C+A NS G   
Sbjct: 37 KPHIRWKLNGTDVDIGMDFRYSVVDG---SLLINNPNKTQDAGTYQCIATNSFGTIV 90

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.4 bits (125), Expect = 1e-09
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             Q  W K +         + E       + ++       G YSC  +N +G  +  L L
Sbjct: 151 PLQFEWQKLSDSQTMPTPWLAEMTS--PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208

Query: 97  S 97
            
Sbjct: 209 D 209

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           RP V W ++   L +  R  +        L   K++  D G Y CVAEN  G      EL
Sbjct: 323 RPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378

Query: 97  S 97
           +
Sbjct: 379 T 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 50.2 bits (120), Expect = 9e-09
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 37  RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
                W        +    RR +        L I K   +D GNYSC A + +    +
Sbjct: 131 ALSYRWLLNEFPNFIPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITK 186

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           PQ+ W K          +  +       L I+ V F D G Y C AEN  G+      + 
Sbjct: 237 PQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 290

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 37 RPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
               W     +L    + R     G    ++   V   D G+Y CVA N+ G
Sbjct: 36 PATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARG 86

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
              +W+     L  + R  +    R  TL +  V   D   Y C  +NS+   R
Sbjct: 496 TTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANR 547

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
              +W+     L  + R  +    R  TL +  V   D G Y C  +N +    
Sbjct: 318 TTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDH 369

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
              +W+     L  + R  +    R  TL +  V   D  +Y C  +N +   R
Sbjct: 140 ATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARR 191

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 11/56 (19%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
             Q  W+       +T             L I  +   + G+Y+C A NS     +
Sbjct: 232 PAQYSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNR 276

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            Q  W  +             T+     L I  +   + G Y+C A NS     +    +
Sbjct: 411 AQYSWLID-------GNIQQHTQ----ELFISNITEKNSGLYTCQANNSASGHSRTTVKT 459

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 11/60 (18%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           PQ  W    +    T             L I K+   + G Y+C   N        +  S
Sbjct: 589 PQYSWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 16/71 (22%)

Query: 38 PQVIWYKETLKLDTTERR-----------IMETRGRRH-----TLVIRKVLFTDFGNYSC 81
              WYK        +                  GR       +L+I+ ++  D G Y+ 
Sbjct: 29 FGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTL 88

Query: 82 VAENSMGKTRQ 92
              S     +
Sbjct: 89 HVIKSDLVNEE 99

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 49.4 bits (118), Expect = 2e-09
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             ++W +       +  R M+  G    L IR V  +D G Y C   N     +    L
Sbjct: 40 AYTLVWTRLHNGKLPS--RAMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94

Query: 97 S 97
           
Sbjct: 95 H 95

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
                W +E  +    E+      G  +     TL I      D G + C A N+ G   
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 92  Q 92
            
Sbjct: 301 V 301

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 37  RPQVI-WYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGKT 90
           +P+   W               ++           L + ++  T+ G Y+ +  NS    
Sbjct: 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401

Query: 91  RQYLELSGKYP 101
                +     
Sbjct: 402 AIAFNVYVNTK 412

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 10/57 (17%)

Query: 36  CRPQ--VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
           C     V W  E L              +++  +  K   T+ G Y+C  ++ +  +
Sbjct: 58  CTDPGFVKWTFEILDETN--------ENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.7 bits (105), Expect = 8e-07
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 12/76 (15%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRH------------TLVIRKVLFTDFGNYSCVAEN 85
           P + WY            ++    +                 I    F   G   C A N
Sbjct: 436 PTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYN 495

Query: 86  SMGKTRQYLELSGKYP 101
            +GKT  Y   + K  
Sbjct: 496 DVGKTSAYFNFAFKGN 511

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRR-------------HTLVIRKVLFTDFGNYSCVA 83
            P++ W+ E    +    ++ +                   T+ I  ++  D G Y C A
Sbjct: 50  VPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRA 109

Query: 84  ENSMGKTRQYLELSGKYPNAQ 104
            N   +         K+  AQ
Sbjct: 110 SNDPDRNHLTRAPRVKWVRAQ 130

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 9/55 (16%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
           Q  W+K   ++           G    L+   V   D G Y C   N+      
Sbjct: 48 VQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 9/52 (17%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
            P   W+K  L L    +            ++  V     G Y C   N   
Sbjct: 147 IPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRD 189

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.4 bits (122), Expect = 4e-09
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRR-----HTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
             +IWY      D  E         R       L  R  L  D GNY+C+  N+   ++ 
Sbjct: 48  LTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKV 107

Query: 93  YLELS 97
              L 
Sbjct: 108 AFPLE 112

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH----------TLVIRKVLFTDFG-NYSCVAEN 85
           R +V W  +  K D     +       H           L I+KV   D   +Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318

Query: 86  SMGKTRQYLELSGKYP 101
           + G+  +  ++  K P
Sbjct: 319 AKGEVAKAAKVKQKVP 334

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
           +P + WY    K+      I E       L     L ++ GNY+CV      
Sbjct: 154 KPTITWYMGCYKIQNFNNVIPE----GMNLSFLIALISNNGNYTCVVTYPEN 201

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 49.6 bits (118), Expect = 4e-09
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 9/63 (14%)

Query: 36  CRPQVIWYKETLKLDTT---------ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
            +P + W+K       +         E     +R     + I K      GNY C     
Sbjct: 38  RKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYK 97

Query: 87  MGK 89
              
Sbjct: 98  DKF 100

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRG--RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
             V       KL   ++         +  TL + +V F   GNYSCVA N  GK    + 
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276

Query: 96  L 96
            
Sbjct: 277 F 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 11/63 (17%), Positives = 16/63 (25%), Gaps = 5/63 (7%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
            V W         +    + + G    L      F + G Y C            + L  
Sbjct: 31  SVEWDG-----PPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85

Query: 99  KYP 101
           K P
Sbjct: 86  KDP 88

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 2/55 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
              V   +   +          +    H   I +  F    +Y C A     K  
Sbjct: 119 EAGVSLVRVRGRPLMRHTNYSFSP--WHGFTIHRAKFIQSQDYQCSALMGGRKVM 171

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 34  AFCRPQVIWY--KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
                +V      E +    +   +    G    L  +KV   D G Y+C A        
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNET 328

Query: 92  QYLEL 96
             +EL
Sbjct: 329 LSVEL 333

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.1 bits (114), Expect = 9e-09
 Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 9/63 (14%)

Query: 36 CRPQVIWYK---ETLKLDTTERRIMETRGRR------HTLVIRKVLFTDFGNYSCVAENS 86
            P V W+K     L     +   +     R        L I        G+Y C     
Sbjct: 35 KPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTK 94

Query: 87 MGK 89
             
Sbjct: 95 DKF 97

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 38  PQVIWYKETLKLDTTE------RRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMGKT 90
            ++ W  +   L++          I    G   TL I  ++  DF   Y+C A NS G  
Sbjct: 44  DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103

Query: 91  RQYLELS 97
            + + L 
Sbjct: 104 TEIIRLK 110

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 38  PQVIWYKETLKLD-----TTERRIMETRGRRHTLVIRKVLFT-DFGNYSCVAENSMGKTR 91
           P+ +W K+   +      ++ R  +  +     L I  +  T D G Y C A NS+G   
Sbjct: 122 PEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSAS 181

Query: 92  QYLELS 97
               L 
Sbjct: 182 VSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
                W K  ++L  T +             I K    D G Y CV  + +   +    +
Sbjct: 34  LMYSYWTKNGVELTATRKNASN-----MEYRINKPRAEDSGEYHCVY-HFVSAPKANATI 87

Query: 97  SGKYP 101
             K  
Sbjct: 88  EVKAA 92

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 6/59 (10%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
              W      L      + +       L+IR V         C   N++G  +  L + 
Sbjct: 249 GYNWSTTMGPL--PPFAVAQGA----QLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKT--RQ 92
            Q+ W+ +   +  T +      G        ++      D  N +C  E+   +     
Sbjct: 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207

Query: 93  YLELSGKYPN 102
            + L+  YP 
Sbjct: 208 TVNLTVYYPP 217

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 49.6 bits (118), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 38  PQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
              +  K     L++            +   L +  V F D G YSCVA N +G     +
Sbjct: 216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATM 275

Query: 95  ELS 97
              
Sbjct: 276 NFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.7 bits (108), Expect = 4e-07
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
           +  V   +E  +    +     +  R    +IRK    D   Y C    +
Sbjct: 119 KDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN 166

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 7/58 (12%)

Query: 36 CRPQ--VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          C     V W         +    ++      TL  R   F + G Y C          
Sbjct: 26 CVSNGSVEWDG-----PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGS 78

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             + WYK   +L     +  ++      L+I      D G Y C       + +  + +S
Sbjct: 159 NNITWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVS 215

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 6/65 (9%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGN-YSCVAENSMGKTR 91
             + W   +  +   +  +             TL    V     GN Y+C   N      
Sbjct: 262 VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKT 321

Query: 92  QYLEL 96
               +
Sbjct: 322 LTTTV 326

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 6/56 (10%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGN-YSCVAENSMGKTRQ 92
             V W K         RR+     +   L I      D    Y C      G   Q
Sbjct: 68  NVVNWEKIGKTRRPLNRRV-----KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ 118

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 9/62 (14%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH---------TLVIRKVLFTDFGNYSCVAENSMG 88
          P+V W ++   L+  +    +                L I  +  +D G Y C+      
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92

Query: 89 KT 90
            
Sbjct: 93 TF 94

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
            ++W ++ + L T         G + +L +  +      ++SC A N+ G T
Sbjct: 138 DLLWLQDAVPLATAPGH-----GPQRSLHVPGL--NKTSSFSCEAHNAKGVT 182

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRR-------HTLVIRKVLFTDFGNYSCVAENSMGKT 90
           P + W      L+ T     E              L + +    + GNY+ +A N  G+ 
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335

Query: 91  RQYLEL 96
              +  
Sbjct: 336 SASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
             Q  W    L+   T  +           +       +  N +C AEN +G+    +++
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLG-LTLANVTSDLNRKNVTCWAENDVGRAEVSVQV 245

Query: 97  SGKYPNAQ 104
           +  +P + 
Sbjct: 246 NVSFPASV 253

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
           +  W       + +  + +E + R        + ++  G Y C A N +G     +E++ 
Sbjct: 264 EYHWTTL----NGSLPKGVEAQNR-TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNI 318

Query: 99  KYP 101
              
Sbjct: 319 TEA 321

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
             V W    LK +   + I    G         +         + +C+    M + ++ L
Sbjct: 166 SVVSWETR-LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESL 224

Query: 95  ELSGKYP 101
            L+ +Y 
Sbjct: 225 TLNVQYE 231

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 9/53 (16%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
          P   W+K  L L         T   +   ++  V     G Y C   N     
Sbjct: 33 PHYQWFKNELPL---------THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.7 bits (113), Expect = 5e-08
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
             + W   +  L  TER  +        L I  +   D G Y C   N +   R
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 47.8 bits (113), Expect = 7e-08
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%)

Query: 37  RPQVIWYKETLKL-------DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK 89
               +W K   +          +  R      R+ TL I      D G + C A N+ G 
Sbjct: 218 SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277

Query: 90  TRQYLEL 96
                 L
Sbjct: 278 ANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 36 CR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
          C     V W  +T   +  E +       ++  +  K   T  G Y+C   N +  +
Sbjct: 34 CIDPDFVRWTFKTYFNEMVENK-------KNEWIQEKAEATRTGTYTCSNSNGLTSS 83

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 47.4 bits (112), Expect = 7e-08
 Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 5/61 (8%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMGKTR 91
                W     +       + +            L I      D G Y+C    S+   +
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269

Query: 92  Q 92
            
Sbjct: 270 D 270

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 36 CR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          C     V+W + + +    E    +       L +  +   D G Y C   +S G   
Sbjct: 22 CSGSAPVVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLET 78

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-TRQYLE 95
             +++W      +   E          H  +         G Y C    S  +    YL 
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199

Query: 96  L 96
           L
Sbjct: 200 L 200

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 7/55 (12%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
            + W+K+        + I      +    +        G Y C    +  K  Q
Sbjct: 30 KNITWFKDG-------KMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
             V W      + T      + R       TL    V   D G Y+C+  NS+G T    
Sbjct: 370 TSVSWITPNGTVMTHGAY--KVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASA 427

Query: 95  ELS 97
            L+
Sbjct: 428 TLN 430

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 13/70 (18%)

Query: 36  CR----PQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENS 86
           CR      V W      + +          R       TL    VL +D G Y+C+  N 
Sbjct: 374 CRTPPMSSVKWLLPNGTVLSHA----SRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429

Query: 87  MGKTRQYLEL 96
            G +     L
Sbjct: 430 AGNSNASAYL 439

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 4/59 (6%)

Query: 37  RPQVIWYKE----TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            P V W                 + E  G     V   +        +CV +N   +  
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 17/81 (20%)

Query: 38  PQVIWYK---------------ETLKLDTTERRI--METRGRRHTLVIRKVLFTDFGNYS 80
            +V W+K               + + ++   R    +        LV+     +  GNY 
Sbjct: 24  IEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYL 83

Query: 81  CVAENSMGKTRQYLELSGKYP 101
           C  +    +  +   LS   P
Sbjct: 84  CRMKLGETEVTKQEHLSVVKP 104

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 34  AFCRPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
               P ++W               ++ GR       TL +R     D G Y C+A N+ G
Sbjct: 411 GDPPPAILW-----LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465

Query: 89  KTRQYLEL 96
                  L
Sbjct: 466 NDSMPAHL 473

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 38  PQVIWY-----KETLKLDTTERRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSM 87
             + +       +        R +    G        TL I  V  +D G Y+C A + +
Sbjct: 38  VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97

Query: 88  GKTRQYLELS 97
              +    + 
Sbjct: 98  MTKKNSTFVR 107

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 10/61 (16%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P V       K     +          TL + ++   D G ++C    +  K    +++
Sbjct: 126 SPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175

Query: 97  S 97
            
Sbjct: 176 V 176

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 17/71 (23%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH-----------------TLVIRKVLFTDFGNYS 80
           Q  W           +    T+G                     L+I+ +   D   Y 
Sbjct: 25 IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 84

Query: 81 CVAENSMGKTR 91
          C  E+   + +
Sbjct: 85 CEVEDQKEEVQ 95

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 38  PQVIWYKETLKLDTTERRIME-TRGRRH------TLVIRKVLFTDFGNYSCVAENSMGK- 89
            +V W + +  +   +R++    +           L I+ +   D G Y+    ++ G  
Sbjct: 28  DEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 87

Query: 90  -TRQYLELSGKYP 101
              + L+L     
Sbjct: 88  ILNKALDLRILEM 100

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.5 bits (99), Expect = 4e-06
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 10/61 (16%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
            P V       K     +          TL + ++   D G ++C    +  K    +++
Sbjct: 125 SPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174

Query: 97  S 97
            
Sbjct: 175 V 175

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 41.7 bits (97), Expect = 9e-06
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 42  WYKETLKLDTTER----RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
              + + +    +    ++ +      TL      +   GN +   E   GK  Q + L
Sbjct: 231 LKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 39.0 bits (90), Expect = 8e-05
 Identities = 10/72 (13%), Positives = 18/72 (25%), Gaps = 17/72 (23%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----------------TLVIRKVLFTDFGNY 79
            Q  W           +    T+G                     L+I+ +   D   Y
Sbjct: 23 SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82

Query: 80 SCVAENSMGKTR 91
           C  E+   + +
Sbjct: 83 ICEVEDQKEEVQ 94

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 13/62 (20%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRH-----TLVIRKVLF-----TDFGNYSCVAENS 86
           P + WYK   +++T +    + R  R      +L   +++       D G Y CVA N 
Sbjct: 38 TPTIEWYKGGERVETDKD---DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94

Query: 87 MG 88
          +G
Sbjct: 95 LG 96

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
              V+      +    E RI+     +    ++VI  +   D G Y C A +        
Sbjct: 260 NCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGS 319

Query: 94  LELSGKYP 101
              + +  
Sbjct: 320 PIQAWQLF 327

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 18  IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFT 74
            +T   +     +         VI     +  + T R    I  T     ++VI ++  +
Sbjct: 136 FKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLS 195

Query: 75  DFGNYSCVAENSMGKTRQYLELSGKYP 101
           D G Y C A +     ++  +L    P
Sbjct: 196 DAGQYLCQAGDDSNSNKKNADLQVLKP 222

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 38  PQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P++   K+ T  L   E                 V     G Y C A ++ G+  + + +
Sbjct: 215 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 260

Query: 97  SGKYP 101
           +   P
Sbjct: 261 NVLSP 265

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 8/64 (12%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             V++Y+          +  +       L I K   +  G Y C        T   + ++
Sbjct: 113 YNVLYYRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164

Query: 98  GKYP 101
            K  
Sbjct: 165 VKEL 168

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 4/57 (7%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
           RP +  Y           + +  R       I      D G Y C A    G   + 
Sbjct: 200 RPGLQLYFSFYM----GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 10/69 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
               W+       T+            +  I      D G Y C    S       LE+ 
Sbjct: 32  SSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQRGLSGRSDPIQLEIH 81

Query: 98  GKYPNAQEP 106
             +   Q  
Sbjct: 82  RGWLLLQVS 90

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 8/54 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            +V +++          +  +      T  I +   +  G+Y C          
Sbjct: 116 VKVTFFQN--------GKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             + W+     + T  +               K    D G Y+C    +      +L + 
Sbjct: 35  DSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL 84

Query: 98  GKYPNAQEP 106
            ++   Q P
Sbjct: 85  FEWLVLQTP 93

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 37  RPQVIWY--------KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
                W         K+ +  D   +   E +    TL I  V  +D G Y+C A + + 
Sbjct: 136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 195

Query: 89  KTRQ 92
             + 
Sbjct: 196 TKKN 199

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ 92
             +V W   ++  +T+  R  E  G      + ++      N+SC+  N+  K   
Sbjct: 132 LAEVSWQNVSVPANTSHIRTPE--GLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 8/54 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            +VI+YK+           ++     H + I      D G Y C  +       
Sbjct: 116 YKVIYYKD--------GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 10/69 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
               W+      + T            +L I    F D G Y C  +        YLE+ 
Sbjct: 35  SSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84

Query: 98  GKYPNAQEP 106
             +   Q  
Sbjct: 85  SDWLLLQAS 93

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 40.1 bits (93), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P   W  +   +D+     +   G   TL +  V F +  +Y C A     K  + +++
Sbjct: 30 SPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 36  CRPQVIWYKET---LKLDTTERRIMETRGRRHT------LVIRKVLFTDFGNYSCVAENS 86
            +P + W+K     L   +  R   +      +      L I KV+  D G Y    +  
Sbjct: 43  DKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAK 102

Query: 87  MGKTRQYLELSGKYP 101
                    +  + P
Sbjct: 103 DTCDSCGFNIDVEAP 117

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 9/64 (14%)

Query: 38 PQVIWYKETLKLDTTE----RRIMETRGRRH-----TLVIRKVLFTDFGNYSCVAENSMG 88
            + W K + K    +    +   + +         TL I+ +   D   Y     ++ G
Sbjct: 31 DDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG 90

Query: 89 KTRQ 92
          K   
Sbjct: 91 KNVL 94

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           P++  Y++   L  ++R           ++  K   +    + C A N + K      +S
Sbjct: 130 PELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 38  PQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P++   K+ T  L   E                 V     G Y C A ++ G+  + + +
Sbjct: 400 PELKCLKDGTFPLPIGE--------------SVTVTRDLEGTYLCRARSTQGEVTREVTV 445

Query: 97  SGKYP 101
           +   P
Sbjct: 446 NVLSP 450

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.1 bits (90), Expect = 8e-05
 Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS 86
            V W        +   R     G    L++R V   D GNYSC     
Sbjct: 37 ATVHWVLRKPAAGSHPSRWA---GMGRRLLLRSVQLHDSGNYSCYRAGR 82

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 39.2 bits (90), Expect = 8e-05
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA-ENSMGKTRQYLE 95
                W  +     + E      +     L I  +    +G+Y C A E S  +  Q+ +
Sbjct: 528 HATYSWRHKENVEQSCEPGH---QSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQ 584

Query: 96  L 96
           L
Sbjct: 585 L 585

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 11/59 (18%)

Query: 38 PQVIWYKETLKLDTTE----------RRIMETRGRRHTLVIRKVLFTDFGNY-SCVAEN 85
           Q  W+    +L + E          R  +E +G +H L++  V   D G         
Sbjct: 36 IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG 94

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 65  TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
           ++ ++ V  +D G Y+C       ++R+ + L 
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 20/71 (28%)

Query: 38  PQVIWYKETLKLDTTERRIM----------ETRGRRH----------TLVIRKVLFTDFG 77
            +V W     K D +E  +             + R H          +L+++ V   D G
Sbjct: 38  DRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEG 97

Query: 78  NYSCVAENSMG 88
            Y+C       
Sbjct: 98  IYTCEIRLKNE 108

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 38  PQVIWYKETLKL---DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
                + + + +      E ++  +R    +  +      D G Y C+     G
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 18/77 (23%), Gaps = 21/77 (27%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGRRH---------------------TLVIRKVLFTD 75
              V WY      +  E    +    ++                      LVIR    TD
Sbjct: 165 NANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD 224

Query: 76  FGNYSCVAENSMGKTRQ 92
            G   C      G+   
Sbjct: 225 AGRVWCELATGQGELDA 241

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 10/91 (10%)

Query: 1   VIWYKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR 60
           + W K     D + +        +   + F      +     +           R     
Sbjct: 37  ISWLKGA-SPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLG---------RASVAN 86

Query: 61  GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
               TL +  V   D G Y C       +T 
Sbjct: 87  LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 37  RPQVIWYK---ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY 93
           + +VIW     + L   TT           +     ++  T    + C       +    
Sbjct: 145 KAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHT 204

Query: 94  LELS 97
            EL 
Sbjct: 205 AELV 208

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 11/49 (22%)

Query: 42  WYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT 90
           W K    +DTT             + I++      G Y+         +
Sbjct: 134 WSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGESEDS 171

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 65  TLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGK 99
            L      + D   + CVA+       + +E++  
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 8/54 (14%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            +V + +          +  +         I K    D G+Y C          
Sbjct: 119 HKVTYLQN--------GKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 10/68 (14%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
              W+     + +             +  I      D G Y C    S       LE+  
Sbjct: 39  STQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI 88

Query: 99  KYPNAQEP 106
            +   Q P
Sbjct: 89  GWLLLQAP 96

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 7/80 (8%)

Query: 13  TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVL 72
             + +++  G R               + W K+          I      ++T  +    
Sbjct: 109 KAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDG-------SIISPLNATKNTWNLGNNA 161

Query: 73  FTDFGNYSCVAENSMGKTRQ 92
               G Y C          Q
Sbjct: 162 KDPRGTYQCQGAKETSNPLQ 181

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 35.0 bits (80), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 8/61 (13%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRH--------TLVIRKVLFTDFGNYSCVAENSMGKT 90
              W  +   L   E         +          L +R V FT  G Y CV  N  G +
Sbjct: 43  TFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS 102

Query: 91  R 91
            
Sbjct: 103 Y 103

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 36.3 bits (82), Expect = 9e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 37  RPQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA-ENSMGKTRQY 93
             +V W  +   LK ++ +  +M  +     L+I  +   D G Y C++ E    KT   
Sbjct: 561 LARVFWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEERVKNKTVFQ 616

Query: 94  LELS 97
           +   
Sbjct: 617 VVAK 620

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 10/68 (14%)

Query: 39  QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG 98
              W+     + +             +  I      D G Y C  + S       LE+  
Sbjct: 39  STQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHI 88

Query: 99  KYPNAQEP 106
            +   Q P
Sbjct: 89  GWLLLQAP 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.89
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.86
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.84
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.82
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.82
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.81
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.8
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.79
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.79
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.78
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.78
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.78
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.78
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.77
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.77
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.77
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.77
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.75
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.75
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.75
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.75
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.73
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.72
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.72
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.72
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.72
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.71
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.71
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.71
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.71
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.7
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.7
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.7
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.69
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.69
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.69
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.69
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.68
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.68
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.68
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.68
1he7_A	126	High affinity nerve growth factor receptor; transf	99.68
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.68
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.66
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.66
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.66
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.66
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.66
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.65
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.65
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.65
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.65
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.64
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.64
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.64
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.64
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.63
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.63
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.63
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.63
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.62
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.62
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.62
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.61
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.61
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.61
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.6
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.6
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.59
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.59
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.59
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.59
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.59
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.58
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.58
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.57
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.57
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.57
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.57
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.57
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.57
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.57
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.56
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.56
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.56
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.55
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.55
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.55
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.55
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.54
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.53
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.53
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.52
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.52
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.52
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.52
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.52
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.51
2ens_A	96	Advanced glycosylation END product-specific recept	99.51
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.51
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.51
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.5
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.5
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.49
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.49
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.49
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.49
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.49
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.49
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.49
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.49
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.48
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.48
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.48
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.47
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.47
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.47
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.47
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.47
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.47
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.46
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.46
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.46
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.46
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.45
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.45
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.44
3khq_A	133	B-cell antigen receptor complex-associated protei	99.44
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.42
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.42
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.42
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.42
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.42
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.41
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.41
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.4
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.4
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.4
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.39
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.39
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.38
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.38
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.38
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.37
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.37
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.37
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.37
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.36
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.36
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.35
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.35
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.35
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.35
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.34
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.34
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.34
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.34
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.34
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.34
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.33
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.33
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.33
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.33
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.33
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.32
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.32
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.32
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.32
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.32
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.32
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.31
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.31
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.3
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.3
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.3
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.3
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.3
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.3
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.29
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.29
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.29
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.28
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.28
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.28
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.28
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.28
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.28
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.28
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.28
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.28
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.27
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.27
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.27
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.27
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.26
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.26
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.26
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.26
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.25
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.25
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.25
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.25
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.25
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.25
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.24
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.24
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.24
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.23
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.23
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.23
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.23
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.23
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.23
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.23
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.23
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.23
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.23
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.23
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.23
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.22
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.22
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.22
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.22
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.21
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.21
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.21
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.2
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.2
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.19
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.19
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.19
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.19
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.19
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.19
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.19
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.19
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.18
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.18
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.18
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.18
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.17
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.17
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.17
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.16
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.15
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	99.15
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.15
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.15
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.15
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.15
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.15
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.15
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.15
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.14
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.13
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.13
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.13
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.13
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.13
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.12
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.12
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.12
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.12
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.12
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.11
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.11
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.11
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.11
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.1
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.1
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.1
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.1
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.09
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.09
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.09
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.08
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.08
1xt5_A	135	Variable region-containing chitin-binding protein	99.08
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.08
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.08
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.07
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	99.06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.06
3kg5_A	134	B-cell antigen receptor complex-associated protei	99.06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.06
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.06
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.05
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.04
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.04
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.61
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.04
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.04
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	99.04
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.03
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.03
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	99.03
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	99.03
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.02
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.02
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.02
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.02
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.02
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.02
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.02
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.02
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.02
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.01
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.01
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.01
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.01
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.01
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.0
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	99.0
2otu_A	115	FV light chain variable domain; antibody FV polygl	99.0
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.0
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.0
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.0
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.99
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.99
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.99
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.99
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.99
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.99
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.99
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.99
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.98
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.98
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.98
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.98
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.98
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.98
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.98
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.98
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.97
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.97
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.97
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	98.97
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.97
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.97
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.97
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.96
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.96
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.96
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.96
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.96
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.96
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.96
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.96
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.96
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.95
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.95
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.95
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.95
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.95
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.95
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.95
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.95
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.95
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.95
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.94
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.94
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.93
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.92
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.92
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.92
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.92
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.92
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.91
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.91
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.91
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.91
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.91
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.91
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.9
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.9
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.9
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.9
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.9
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.9
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.9
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.9
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.89
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.89
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.88
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.88
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.88
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.87
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.87
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.87
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.87
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.87
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.87
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.87
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.86
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.85
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.85
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.85
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.84
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.84
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.84
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.84
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.82
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.82
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.82
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.81
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.81
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.81
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.81
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.81
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.8
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.8
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	98.8
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.8
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.79
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.79
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.79
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.79
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.78
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.78
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	98.78
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.77
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.77
3b9v_A	120	Heavy chain variable domain; antibody engineering,	98.77
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.76
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.75
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.75
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.75
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	98.75
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.75
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.75
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.75
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	98.74
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	98.74
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.74
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.74
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	98.73
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.73
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.73
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	98.72
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.72
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.72
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.72
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.71
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.71
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.71
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	98.71
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.7
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.7
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.69
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	98.69
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.69

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.89  E-value=2.2e-21  Score=96.84  Aligned_cols=94  Identities=24%  Similarity=0.282  Sum_probs=82.8

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|.
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLG-EPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEE-ecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            577887788889999999999999999 9999999999999998887877766666778999999999999999999999


Q ss_pred             CCcceEEEEEEEeCC
Q psy17205         87 MGKTRQYLELSGKYP  101 (106)
Q Consensus        87 ~~~~~~~~~l~~~~~  101 (106)
                      .|.....+.|.+..+
T Consensus        92 ~G~~~~~~~l~V~~p  106 (107)
T 3knb_B           92 AGEAYAAAAVTVLEP  106 (107)
T ss_dssp             TEEEEEEEEEEEEC-
T ss_pred             CCEEEEEEEEEEEcC
Confidence            998888887776654

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.86  E-value=8.8e-20  Score=90.02  Aligned_cols=92  Identities=23%  Similarity=0.252  Sum_probs=79.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +|.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....  ++.+........|.|.++...|.|.|.|.+.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g-~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTG-EPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEE-ESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEE-ecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            567777778889999999999999999 9999999999999887643  5666666667789999999999999999999


Q ss_pred             cCCCcceEEEEEEEe
Q psy17205         85 NSMGKTRQYLELSGK   99 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~   99 (106)
                      |..|.....+.|.+.
T Consensus        84 N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           84 NEFGSDSATVNIHIR   98 (100)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999988887777654

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.84  E-value=8e-19  Score=88.27  Aligned_cols=92  Identities=15%  Similarity=0.122  Sum_probs=78.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTG-TQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEES-SSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEc-CCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            3567777777888999999999999999 999999999999888777677776655567899999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy17205         86 SMGKTRQYLELSG   98 (106)
Q Consensus        86 ~~~~~~~~~~l~~   98 (106)
                      ..|.....+.|.+
T Consensus        85 ~~g~~~~~~~l~V   97 (114)
T 2cqv_A           85 KLGSRQAQVNLTV   97 (114)
T ss_dssp             SSCEEECCEEEEE
T ss_pred             CCCcEEEEEEEEE
Confidence            9988777666663

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.82  E-value=3e-18  Score=84.65  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=80.8

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.+......+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.|.++...|.|.|.|.+.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQS-KPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEE-ESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEe-cCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            34567777777888999999999999999 99999999999999888777777666667789999999999999999999


Q ss_pred             cCCCcceEEEEEEEe
Q psy17205         85 NSMGKTRQYLELSGK   99 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~   99 (106)
                      |..|.......|.+.
T Consensus        85 N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           85 NYKGEASDYATLDVT   99 (103)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEE
Confidence            999888777766644

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.81  E-value=8.8e-18  Score=82.35  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.|.++...|.|.|.|.+.|
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATG-EPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEE-ESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEe-cCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            3567777777788999999999999999 899999999999998877777776666677899999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy17205         86 SMGKTRQYLELSGK   99 (106)
Q Consensus        86 ~~~~~~~~~~l~~~   99 (106)
                      ..|.....+.|.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 3puc_A           84 SAGSVSSSCKLTIK   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEE
Confidence            98887777666543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.80  E-value=2.6e-17  Score=80.68  Aligned_cols=92  Identities=21%  Similarity=0.148  Sum_probs=76.5

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+.... .......|.|.++...|.|.|.|.+.|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVG-KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEE-eCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            567777777788899999999999999 999999999999988876655433 234566899999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy17205         86 SMGKTRQYLELSGK   99 (106)
Q Consensus        86 ~~~~~~~~~~l~~~   99 (106)
                      ..|.....+.|.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           84 IAGETSSHAFLLVQ   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99888877766644

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.79  E-value=6.1e-17  Score=79.16  Aligned_cols=89  Identities=20%  Similarity=0.322  Sum_probs=75.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      +...+..+.+..|+.+.|.|.+.+ . |.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|..|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEES-CCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eeccCcCEEEcCCCcEEEEEEEec-cCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            445566788899999999999998 8 89999999999988877777665555677899999999999999999999999


Q ss_pred             cceEEEEEEEe
Q psy17205         89 KTRQYLELSGK   99 (106)
Q Consensus        89 ~~~~~~~l~~~   99 (106)
                      .....+.|.+.
T Consensus        83 ~~~~~~~l~V~   93 (97)
T 2bk8_A           83 EDSSYAELFVK   93 (97)
T ss_dssp             EEEEEEEEEET
T ss_pred             eEeEEEEEEEE
Confidence            88877777654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.79  E-value=2.6e-17  Score=83.06  Aligned_cols=97  Identities=20%  Similarity=0.163  Sum_probs=79.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEcC-cEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETRG-RRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .++.|...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.. ..++...... ....|.|.++...|.|.|.|.+
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g-~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISA-IPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCC-BSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEec-cCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            3567777788889999999999999999 89999999999988875 3466555433 3457999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCCCC
Q psy17205         84 ENSMGKTRQYLELSGKYPNA  103 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~  103 (106)
                      .|..|.....+.|.+..++.
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSC
T ss_pred             EcCCCeEEEEEEEEEeCCCC
Confidence            99999888877777555443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.78  E-value=3.9e-17  Score=80.05  Aligned_cols=92  Identities=18%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC-EEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+ +..........|.|.++...|.|.|.|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQG-EPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEE-ESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEE-cCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            4567777777788899999999999999 89999999999988876543 344444556689999999999999999999


Q ss_pred             cCCCcceEEEEEEE
Q psy17205         85 NSMGKTRQYLELSG   98 (106)
Q Consensus        85 ~~~~~~~~~~~l~~   98 (106)
                      |..|.....+.|.+
T Consensus        83 N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           83 NEYGARQCEARLEV   96 (99)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ECCCceeEEEEEEE
Confidence            99988877766654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.78  E-value=1.5e-17  Score=80.76  Aligned_cols=89  Identities=20%  Similarity=0.248  Sum_probs=72.3

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +|.+......+.+..|+.+.|.|.+.| .|.|.+.|++++  ..+.....  .........|.|.++...|.|.|.|.+.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g-~P~p~i~W~k~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIG-APDPTATWTVGDSGAALAPELL--VDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEEC-CSSCEEEEECSTTTCBCSTTSE--EEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEE-cCCCEEEEEECCCCcccCCcEE--EEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            456666667788999999999999999 999999999998  77765422  2233445689999999999999999999


Q ss_pred             cCCCcceEEEEEEE
Q psy17205         85 NSMGKTRQYLELSG   98 (106)
Q Consensus        85 ~~~~~~~~~~~l~~   98 (106)
                      |..|.....+.|.+
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            99998777766653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=6.8e-17  Score=81.65  Aligned_cols=93  Identities=23%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             cceeec---cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          7 TLKLDT---TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         7 ~~~~~~---~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +|.+..   ....+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.. .++.+........|.|.++...|.|.|.|.+
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g-~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQG-KPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEE-ESCCEEEEEETTEECCC-SSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEcc-CCCCEEEEEECCEECCC-CcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            455532   345678889999999999999 99999999999998873 3455555555667999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCC
Q psy17205         84 ENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~  101 (106)
                      .|..|.....+.|.+...
T Consensus        99 ~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             ECSSCEECCEEEEEEECC
T ss_pred             EeCCCeEEEEEEEEEEcC
Confidence            999998877777776544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=2.1e-17  Score=82.57  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETR-GRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.. ..++.+... .....|.|.++...|.|.|.|.+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAG-NPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCC-SSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEe-cCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4566776777788899999999999999 99999999999988775 445555543 33457999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCC
Q psy17205         84 ENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~  101 (106)
                      .|..|.....+.|.+..+
T Consensus        86 ~N~~g~~~~~~~l~V~~~  103 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAV  103 (110)
T ss_dssp             ECTTCCEEECCCEEEECC
T ss_pred             EECCCeEEEEEEEEEECC
Confidence            999998877666664443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=3.1e-17  Score=80.83  Aligned_cols=92  Identities=21%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .++.|......+.+..|+.+.|.|.+ .  |.|.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v-~--p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI-S--ENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC-S--SCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe-C--CCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            35667777778889999999999999 5  78899999999999888888777777677899999999999999999999


Q ss_pred             CCCcceEEEEEEEeCCC
Q psy17205         86 SMGKTRQYLELSGKYPN  102 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~~~  102 (106)
                      .  .......|.+..+|
T Consensus        83 ~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGP   97 (100)
T ss_dssp             S--CCCEEEEEEEECCS
T ss_pred             C--CeeEEEEEEEeCCC
Confidence            7  33445555544443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.77  E-value=7.3e-17  Score=79.19  Aligned_cols=93  Identities=20%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+. ..........|.|.++...|.|.|.|.+.|
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSG-LPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEE-ESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEe-eCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            456666677788899999999999999 899999999999888765432 233334456899999999999999999999


Q ss_pred             CCCcceEEEEEEEeC
Q psy17205         86 SMGKTRQYLELSGKY  100 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~  100 (106)
                      ..|.....+.|.+..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999887777776543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.77  E-value=6e-18  Score=84.16  Aligned_cols=92  Identities=27%  Similarity=0.297  Sum_probs=78.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.|.++...|.|.|.|.+.|.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g-~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDG-EPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEEC-SSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEE-cCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            456777777888999999999999999 9999999999998887776776666555678999999999999999999999


Q ss_pred             CCcceEEEEEEEe
Q psy17205         87 MGKTRQYLELSGK   99 (106)
Q Consensus        87 ~~~~~~~~~l~~~   99 (106)
                      .|.....+.|.+.
T Consensus        93 ~G~~~~~~~l~V~  105 (106)
T 1nct_A           93 EGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCBCCEEEEEEEC
T ss_pred             CCeEEEEEEEEEE
Confidence            9988877777643

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.75  E-value=2.4e-16  Score=83.06  Aligned_cols=95  Identities=19%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+... .....|.|.++...|.|.|.|.+.
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g-~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEG-YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEE-ecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            3567777777788899999999999999 99999999999998887766665542 335689999999999999999999


Q ss_pred             cCCCcceEEEEEEEeCC
Q psy17205         85 NSMGKTRQYLELSGKYP  101 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~~  101 (106)
                      |..|.....+.|.+..+
T Consensus       119 N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          119 NSLGEATCTAELLVETM  135 (154)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             ECCCeEEEEEEEEEeCc
Confidence            99998877777765544

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=2.2e-17  Score=82.42  Aligned_cols=95  Identities=19%  Similarity=0.240  Sum_probs=76.3

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....+..... ......|.|.++...|.|.|.|.+.|
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSG-LPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEEC-SSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEE-cCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            567777788889999999999999999 9999999999998777655443332 23345799999999999999999999


Q ss_pred             CCCcceEEEEEEEeCCC
Q psy17205         86 SMGKTRQYLELSGKYPN  102 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~~~  102 (106)
                      ..|.....+.|.+..++
T Consensus        88 ~~g~~~~~~~l~V~~~p  104 (110)
T 2dm3_A           88 RAGQNSFSLELVVAAKE  104 (110)
T ss_dssp             SSCEEEECCEEEEECCC
T ss_pred             CCCEEEEEEEEEEeCCC
Confidence            99887776666644443

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.75  E-value=2.2e-16  Score=76.82  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .++.|......+.+..|+.+.|.|.+.+  +.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~--~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE--PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS--SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC--CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            3466777777888999999999999976  45789999999999887788777766677899999999999999999987


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        82 ~   82 (93)
T 1waa_A           82 T   82 (93)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=3.5e-17  Score=80.41  Aligned_cols=92  Identities=21%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.. ..++.....   ..|.|.++...|.|.|.|.+.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATG-DPLPVISWLKEGFTFPGRDPRATIQEQ---GTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEEC-SSCCEEEEEESSSEESSSCSSCEECTT---CCEEEESCCTTTCCEEEEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEE-cCCCEEEEEECCEECCCCCCCEEEcCC---CEEEEccCCcccCEEEEEEEE
Confidence            4567777777788899999999999999 99999999999887763 333333222   269999999999999999999


Q ss_pred             cCCCcceEEEEEEEeCC
Q psy17205         85 NSMGKTRQYLELSGKYP  101 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~~  101 (106)
                      |..|.....+.|.+..+
T Consensus        83 n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           83 SSSGETSWSAVLDVTES   99 (100)
T ss_dssp             CSSCCCBCCEEEEEESC
T ss_pred             cCCCCEEEEEEEEEecC
Confidence            99988877777765543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.72  E-value=1.3e-16  Score=77.83  Aligned_cols=85  Identities=15%  Similarity=0.310  Sum_probs=70.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ++.+...+..+.+..|+.+.|.|.+.+ .| |.+.|++++..+....++...    ...|.|.++...|.|.|.|.+.|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g-~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEES-SC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEET
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCC-CC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccC
Confidence            456666677788899999999999999 77 899999999888766565443    237999999999999999999999


Q ss_pred             CCcceEEEEEE
Q psy17205         87 MGKTRQYLELS   97 (106)
Q Consensus        87 ~~~~~~~~~l~   97 (106)
                      .|.....+.|.
T Consensus        83 ~g~~~~~~~l~   93 (95)
T 2ckn_A           83 SGSDTTYFSVN   93 (95)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCcEEEEEEEE
Confidence            88877766654

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.72  E-value=3.1e-16  Score=77.48  Aligned_cols=77  Identities=18%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ++.+......+.+..|+.+.|.|.+.+  +.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|.|.+.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~--~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE--DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS--SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC--CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            344666667788889999999999966  668999999999888766  5566666666789999999999999999998


Q ss_pred             c
Q psy17205         85 N   85 (106)
Q Consensus        85 ~   85 (106)
                      |
T Consensus        85 n   85 (103)
T 1x44_A           85 G   85 (103)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.9e-16  Score=79.98  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+.. ..++.....+   .|.|.++...|.|.|.|.+.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g-~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATG-SPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCC-SSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEe-cCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            3566766777788999999999999999 99999999999987764 3455555444   79999999999999999999


Q ss_pred             cCCCcceEEEEEEEe
Q psy17205         85 NSMGKTRQYLELSGK   99 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~   99 (106)
                      |..|.....+.|.+.
T Consensus        83 n~~g~~~~~~~l~V~   97 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQ   97 (118)
T ss_dssp             CSSCEEEEECCEEEE
T ss_pred             cCCCcEEEEEEEEEE
Confidence            999887776666644

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=4.3e-17  Score=79.98  Aligned_cols=89  Identities=17%  Similarity=0.262  Sum_probs=72.1

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+......   .......|.|.++...|.|.|.|.+.
T Consensus         9 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRG-TPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEEECEEEE-ESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             ccCCceeecCCCCEEeCCCeEEEEEEEee-eCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEEE
Confidence            34677777777888999999999999999 899999999999877654322   12335679999999999999999999


Q ss_pred             cCCCcceEEEEEE
Q psy17205         85 NSMGKTRQYLELS   97 (106)
Q Consensus        85 ~~~~~~~~~~~l~   97 (106)
                      |..|.....+.|.
T Consensus        85 N~~g~~~~~~~l~   97 (99)
T 2yr3_A           85 NALGQVSCSAWVT   97 (99)
T ss_dssp             CSSCEEEEECCEE
T ss_pred             ECCCeEEEEEEEE
Confidence            9998877665554

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.71  E-value=2.4e-16  Score=75.31  Aligned_cols=78  Identities=26%  Similarity=0.373  Sum_probs=64.4

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .+.+..|+.+.|.|...+  |.|.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|    ......
T Consensus         5 ~v~~~~G~~v~l~C~vs~--p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~   78 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG--PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFL   78 (84)
T ss_dssp             CEEECTTSCEEEECCCSC--CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEE
T ss_pred             EEEEecCCCEEEEEEECC--CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEE
Confidence            467889999999999844  88889999999999988888877777778899999999999999998755    344455


Q ss_pred             EEEe
Q psy17205         96 LSGK   99 (106)
Q Consensus        96 l~~~   99 (106)
                      |.+.
T Consensus        79 l~V~   82 (84)
T 2lu7_A           79 VSVE   82 (84)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5543

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=1.5e-16  Score=78.96  Aligned_cols=90  Identities=19%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .++.+......+.+..|+.+.|.|.+.+ .+.+ +.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESC-SSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcC-CCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            3567777777888999999999999998 7777 9999999888777677666666677899999999999999999999


Q ss_pred             CCCcceEEEEEE
Q psy17205         86 SMGKTRQYLELS   97 (106)
Q Consensus        86 ~~~~~~~~~~l~   97 (106)
                      ........+.+.
T Consensus        85 ~~~~~~~~l~V~   96 (106)
T 2dlt_A           85 YALSLSAKLNFL   96 (106)
T ss_dssp             SCCCCCBCEEEE
T ss_pred             CCceEEEEEEEE
Confidence            844444444444

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.71  E-value=6.5e-17  Score=80.39  Aligned_cols=94  Identities=17%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....+.....  ....|.|.++...|.|.|.|.+.|
T Consensus         9 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A            9 VAPTITGNLENQTTSIGESIEVSCTASG-NPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             --CCCBSCCCCEEEETTCCEEEECBCC-----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCGGGCEEEEEEEC-
T ss_pred             CCCceecCCCCeEEeCCCeEEEEEECcC-cCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCcccCEEEEEEEEe
Confidence            4566776777788899999999999998 8999999999998776655543322  234799999999999999999999


Q ss_pred             CCCcceEEEEEEEeCCC
Q psy17205         86 SMGKTRQYLELSGKYPN  102 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~~~  102 (106)
                      ..|.....+.|.+..++
T Consensus        86 ~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           86 VLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             ---CEEEEEEEEEEC--
T ss_pred             CCCceEEEEEEEEeCCC
Confidence            99988887777755443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=3.2e-16  Score=77.50  Aligned_cols=79  Identities=22%  Similarity=0.368  Sum_probs=65.2

Q ss_pred             ceeeccCCe---EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          8 LKLDTTERR---IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         8 ~~~~~~~~~---~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      |.+...+..   +.+..|+.+.|.|.+.+ .+.+ +.|++++..+....++.+...+....|.|.++...|.|.|.|.+.
T Consensus         8 P~~~~~p~~~~~~~v~~G~~v~l~C~~~~-~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (104)
T 2e6p_A            8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE   85 (104)
T ss_dssp             SCCCCBCCSCEEEEEESSSCEECCEECSS-TTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECS
T ss_pred             CCEEECCCCCccEEEeCCCcEEEEEEecC-CCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEEC
Confidence            444444444   67889999999999999 8888 999999998887767766666667789999999999999999999


Q ss_pred             cCCC
Q psy17205         85 NSMG   88 (106)
Q Consensus        85 ~~~~   88 (106)
                      |..+
T Consensus        86 n~~~   89 (104)
T 2e6p_A           86 GVSA   89 (104)
T ss_dssp             SCCC
T ss_pred             CceE
Confidence            8743

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=2.9e-16  Score=77.50  Aligned_cols=78  Identities=19%  Similarity=0.256  Sum_probs=66.9

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .++.+......+.+..|+.+.|.|.+.+  +.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~--~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR--AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS--SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC--CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            3566766777788999999999999976  67789999999888777777777666677899999999999999999998

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=3.7e-16  Score=77.41  Aligned_cols=93  Identities=12%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ..++.+......+.+..|+.+.|.|...+ .+. +.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   84 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV   84 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSS-CCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcC-CCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE
Confidence            34456666777888999999999999988 664 4799999999888777777776666778999999999999999987


Q ss_pred             EcCCCcceEEEEEEEeCCC
Q psy17205         84 ENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~  102 (106)
                      .|    ......|.+..++
T Consensus        85 ~~----~~~~a~L~V~~~p   99 (104)
T 2eny_A           85 RG----LTSKASLIVRERS   99 (104)
T ss_dssp             TT----EEEEECEEEECCC
T ss_pred             CC----eeEEEEEEEeCCC
Confidence            55    3344555544443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.4e-15  Score=75.01  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      ++.+......+.+..|+.+.|.|. .+ .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~-~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TE-HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CS-SCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eC-CCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            566767777888999999999999 47 788999999999888877777776666677899999999999999998

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.69  E-value=3.4e-15  Score=74.32  Aligned_cols=93  Identities=15%  Similarity=0.046  Sum_probs=69.8

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEE-cC--CCCCEEEEEc------CcEEEEEEcccCC
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLK-LD--TTERRIMETR------GRRHTLVIRKVLF   73 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~-l~--~~~~~~~~~~------~~~~~l~~~~~~~   73 (106)
                      ..|.|...+..+.+..|+.+.|.|.+.+ .|.   |.+.|++++.. +.  ...++.+...      .....|.|.++..
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g-~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAG-ASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEEC-C-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECC-CccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC
Confidence            3466667777888999999999999999 888   99999998622 21  1123333210      1245799999999


Q ss_pred             CCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         74 TDFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      .|.|.|.|.+.|..|...+.+.|.+.
T Consensus        82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999988888777653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.69  E-value=7.6e-15  Score=80.70  Aligned_cols=92  Identities=17%  Similarity=0.256  Sum_probs=75.3

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +|.+ ..+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+...  .++.+........|.|.++...|.|.|.|.+.
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g-~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFA-YPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEE-ESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEee-cCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            4555 3555688889999999999999 999999999999988765  45555554556789999999999999999999


Q ss_pred             cCCCcceEEEEEEEeC
Q psy17205         85 NSMGKTRQYLELSGKY  100 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~  100 (106)
                      |..|.....+.+.+..
T Consensus        97 n~~g~~~~~~~l~v~~  112 (215)
T 3mtr_A           97 NRIGQESLEFILVQAD  112 (215)
T ss_dssp             CSSCEEEEEEEEEECC
T ss_pred             ECCCceEEEEEEEECC
Confidence            9999887777776543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=1.6e-16  Score=80.97  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=69.3

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecC---CCCeEEEeeCCEE-cC--CCCCEEEEEc------CcEEEEEEcccCCCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAF---CRPQVIWYKETLK-LD--TTERRIMETR------GRRHTLVIRKVLFTD   75 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~---p~p~~~w~~~~~~-l~--~~~~~~~~~~------~~~~~l~~~~~~~~~   75 (106)
                      +.|...+..+.+..|+.+.|.|...+ .   |.|.+.|+++... +.  ...++.+...      .....|+|.++...|
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g-~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   86 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKA-EDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF   86 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEEC-CCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEec-cCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence            45666777888999999999999987 5   7899999997411 11  1234433211      124679999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEEEeC
Q psy17205         76 FGNYSCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      .|.|.|.+.|..+...+.+.|.+..
T Consensus        87 aG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           87 AGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            9999999999998888877777555

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.69  E-value=4e-15  Score=74.54  Aligned_cols=89  Identities=26%  Similarity=0.366  Sum_probs=71.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ++.+......+.+..|+.+.|.|...+ .  |.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+   
T Consensus        19 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           19 PIKFTEGLRNEEATEGATAVLRCELSK-M--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             CCCEEECCCCCEECTTSCEEEEEEESS-C--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCcccccCCceEEeCCCeEEEEEEECC-C--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            456666667778889999999999977 4  6899999999888777887776666778999999999999999999   


Q ss_pred             CCcceEEEEEEEeCCC
Q psy17205         87 MGKTRQYLELSGKYPN  102 (106)
Q Consensus        87 ~~~~~~~~~l~~~~~~  102 (106)
                       +.......|.+..++
T Consensus        93 -~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           93 -GKERTSAMLTVRAMP  107 (113)
T ss_dssp             -TTEEEEEEEEECCCC
T ss_pred             -CCCCEEEEEEEeCCC
Confidence             455555666644443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.68  E-value=3e-15  Score=73.98  Aligned_cols=81  Identities=15%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             ecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE--E-c--CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME--T-R--GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~--~-~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+..+.+.|.+.| .|.|.+.|++++..+....+....  . .  .....|.|.++...|.|.|.|.+.|..|.....+
T Consensus        14 ~~~~~~~~~c~v~G-~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKG-NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEEC-SSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEEE-eCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            35778999999999 999999999999988876553221  1 1  1234599999999999999999999999988888


Q ss_pred             EEEEeCC
Q psy17205         95 ELSGKYP  101 (106)
Q Consensus        95 ~l~~~~~  101 (106)
                      .|.+..+
T Consensus        93 ~l~V~~~   99 (103)
T 1wwb_X           93 SAHFMGW   99 (103)
T ss_dssp             EECCSCC
T ss_pred             EEEECCC
Confidence            8875443

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.68  E-value=5e-15  Score=72.72  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=71.6

Q ss_pred             ccceeeccCCe-EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERR-IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~-~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...... +.+..|+.+.|.|.+..  |.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+ 
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~--p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELAD--PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEESC--TTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEecC--CCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE-
Confidence            35666655554 67789999999999864  888999999998887777777776666778999999999999999998 


Q ss_pred             cCCCcceEEEEEEEeCCC
Q psy17205         85 NSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~~~  102 (106)
                         +.......|.+..++
T Consensus        83 ---g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 ---GDEKCSTELFVRSGP   97 (100)
T ss_dssp             ---TTEEEEEEEEECCSC
T ss_pred             ---CCceEEEEEEEecCC
Confidence               455556666655543

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.68  E-value=1.1e-15  Score=75.39  Aligned_cols=74  Identities=22%  Similarity=0.355  Sum_probs=64.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      ++.+......+.+..|+++.|.|.+.+ .+.+ +.|++++..+....++.+...+....|.|.++...|.|.|.|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSS-VAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSS-CCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeC-CCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence            456666677788999999999999999 8888 9999999888777777777777777899999999999999998

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.68  E-value=1.4e-14  Score=79.14  Aligned_cols=89  Identities=22%  Similarity=0.258  Sum_probs=74.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..... +....|.|.++...|.|.|.|.+.|..|..
T Consensus       122 ~~~~~~~v~~g~~~~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  200 (212)
T 2r15_A          122 GLPDVVTIQEGKALNLTCNVWG-DPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE  200 (212)
T ss_dssp             BCCSEEEEETTCCEEEEEEEEC-SSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCCcEEEccCCeEEEEEEEcC-CCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE
Confidence            3455677889999999999999 99999999999999887767665554 556789999999999999999999999988


Q ss_pred             eEEEEEEEeCC
Q psy17205         91 RQYLELSGKYP  101 (106)
Q Consensus        91 ~~~~~l~~~~~  101 (106)
                      ...+.|.+..|
T Consensus       201 ~~~~~l~V~~P  211 (212)
T 2r15_A          201 TSDFTVSVFIP  211 (212)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEEcc
Confidence            88877776544

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.68  E-value=4.6e-15  Score=75.59  Aligned_cols=77  Identities=18%  Similarity=0.174  Sum_probs=63.6

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-------CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      .+..+.|.|.+.| .|.|.+.|+++|..+....+......       .....|.|..+...|.|.|.|.+.|..|.....
T Consensus        14 ~~~~~~l~c~v~G-~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDG-QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEECC-SSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cCccEEEEEEEee-eCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            5678899999999 99999999999999987766433221       124579999999999999999999999998887


Q ss_pred             EEEEE
Q psy17205         94 LELSG   98 (106)
Q Consensus        94 ~~l~~   98 (106)
                      +.|.+
T Consensus        93 ~~l~v   97 (126)
T 1he7_A           93 IMAAF   97 (126)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            77763

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-15  Score=72.74  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +.+...+..+.+..|+.+.|.|.. + .+.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~-~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-E-RAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-S-SSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-C-CCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            455666677889999999999999 7 7889999999998887776777666666778999999999999999999

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2e-16  Score=77.87  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=65.8

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----CEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----RRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .++.+......+.+..|+.+.|.|...+ .+ +.+.|++++..+....    ++.+...+....|.|.++...|.|.|.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSE-EG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESC-SS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeC-CC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            4566766677788899999999999998 77 9999999998887655    5566666667789999999999999999


Q ss_pred             EEEc
Q psy17205         82 VAEN   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      .+.|
T Consensus        85 ~a~n   88 (101)
T 2edk_A           85 ITNG   88 (101)
T ss_dssp             ECSS
T ss_pred             EEcC
Confidence            9887

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.66  E-value=6.2e-16  Score=75.88  Aligned_cols=83  Identities=22%  Similarity=0.284  Sum_probs=64.8

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+. ..........|.|.++...|.|.|.|.+.|..|.....
T Consensus        16 ~~~~v~~G~~v~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   94 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGG-NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   94 (100)
T ss_dssp             CEEEECTTCCEEEECCEEE-ESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccc-cCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEE
Confidence            4577889999999999999 899999999999887654321 01111223479999999999999999999999887776


Q ss_pred             EEEEE
Q psy17205         94 LELSG   98 (106)
Q Consensus        94 ~~l~~   98 (106)
                      +.|.+
T Consensus        95 ~~l~V   99 (100)
T 3caf_A           95 YHLDV   99 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66653

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=72.82  Aligned_cols=68  Identities=21%  Similarity=0.358  Sum_probs=58.6

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+..|+.+.|.|...+  |.+.+.|++++..+....++.+...+..+.|.|.++...|.|.|.|.+.|.
T Consensus        16 v~~~~g~~v~l~C~v~~--p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR--EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC--TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC--CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            45568999999999844  788899999999998887877777777788999999999999999998664

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.66  E-value=9.4e-15  Score=78.90  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ++.+........+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.....+....|.+.++...|.|.|.|.+.|.
T Consensus       103 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  181 (194)
T 2a38_A          103 PPNFVQRLQSMTVRQGSQVRLQVRVTG-IPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS  181 (194)
T ss_dssp             EEEEEECCCCEEECTTEEEEEEEEEEE-ESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEET
T ss_pred             CCEEEeCCccEEEcCCCEEEEEEEEEE-ecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeC
Confidence            445555555677888999999999999 8999999999999988777777666666678999999999999999999999


Q ss_pred             CCcceEEEEEEE
Q psy17205         87 MGKTRQYLELSG   98 (106)
Q Consensus        87 ~~~~~~~~~l~~   98 (106)
                      .|.....+.|.+
T Consensus       182 ~g~~~~~~~l~V  193 (194)
T 2a38_A          182 VGRATSTAELLV  193 (194)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCceEEEEEEEE
Confidence            988777766654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.66  E-value=8.5e-15  Score=79.13  Aligned_cols=92  Identities=23%  Similarity=0.326  Sum_probs=77.8

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....++.....+....|.|.++...|.|.|.|.+.
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVG-RPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIAT   83 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEE-ESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEE
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEec-CCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEE
Confidence            34667777777888999999999999999 89999999999998887777777776667789999999999999999999


Q ss_pred             cCCCcceEEEEEE
Q psy17205         85 NSMGKTRQYLELS   97 (106)
Q Consensus        85 ~~~~~~~~~~~l~   97 (106)
                      +..+.....+.+.
T Consensus        84 n~~~~~~~~~~l~   96 (197)
T 3lcy_A           84 NEVGEVETSSKLL   96 (197)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             CCCCceeEEEEEE
Confidence            9887766555444

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.65  E-value=1.2e-14  Score=82.63  Aligned_cols=93  Identities=19%  Similarity=0.198  Sum_probs=77.7

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+....++..........|.|.++...|.|.|.|.+.|
T Consensus       191 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  269 (284)
T 2rik_A          191 EPPVFRKKPHPVETLKGADVHLECELQG-TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASN  269 (284)
T ss_dssp             CCCBCCSCCCCEEECTTCCEEEEEECBS-SSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCcceeCCCcceecCCCeEEEEEEEEe-cCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            3455555555677889999999999999 999999999999998887777666656667899999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy17205         86 SMGKTRQYLELSGK   99 (106)
Q Consensus        86 ~~~~~~~~~~l~~~   99 (106)
                      ..|.....+.|.+.
T Consensus       270 ~~G~~~~~~~l~V~  283 (284)
T 2rik_A          270 DVGSYTCVGSITLK  283 (284)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEc
Confidence            99988887777643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.65  E-value=2.9e-14  Score=81.02  Aligned_cols=94  Identities=20%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....++..........|.|.++...|.|.|.|.+.|
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTG-TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEES-SSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEc-CCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            3567777777888899999999999999 899999999999988877666665555567899999999999999999999


Q ss_pred             CCCcceEEEEEEEeC
Q psy17205         86 SMGKTRQYLELSGKY  100 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~  100 (106)
                      ..|.....+.|.+..
T Consensus        83 ~~g~~~~~~~l~V~~   97 (284)
T 2rik_A           83 VAGKDSCSAQLGVQE   97 (284)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEEccC
Confidence            887766666665443

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.65  E-value=1.4e-14  Score=71.79  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=69.2

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-EcC-------CCCCEEEEE-cCcEEEEEEcccCCCCC
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-KLD-------TTERRIMET-RGRRHTLVIRKVLFTDF   76 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-~l~-------~~~~~~~~~-~~~~~~l~~~~~~~~~~   76 (106)
                      .++.+...+..+.+..|+++.|.|...+ .+.+.+.|++++. .+.       ...++.... ......|.|.++...|.
T Consensus         5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            5 GSQGQFPLTQNVTVVEGGTAILTCRVDQ-NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ---CCCEECCCEEEETTSCEEEEEEESS-CSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             cCCCccccCCeeEEEeCCcEEEEeEEcC-CCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            3455556677788999999999999999 8899999998764 221       222554332 22466899999999999


Q ss_pred             EeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         77 GNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        77 g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.|.|.+.| .+.......|.+..+
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~  107 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGV  107 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcC
Confidence            999999999 777777777775544

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.65  E-value=4.1e-15  Score=81.73  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+.... ...+..|+.+.|.|.+.+ . |.|.+.|++++..+....++.  .......|.|.++...|.|.|.|.+.|
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g-~~P~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKD  192 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEES-CCTTCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeC-CCCCCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            34444333 366778999999999999 8 899999999999887654431  123345799999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy17205         86 SMGKTRQYLELSG   98 (106)
Q Consensus        86 ~~~~~~~~~~l~~   98 (106)
                      ..|...+...|++
T Consensus       193 ~~G~~~~~~~L~~  205 (207)
T 3rbs_A          193 DRGKDKSRLKLVD  205 (207)
T ss_dssp             TTEEEEEEEEECC
T ss_pred             CCCEEEEEEEEec
Confidence            9999888887764

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.64  E-value=1.3e-16  Score=81.07  Aligned_cols=99  Identities=19%  Similarity=0.310  Sum_probs=76.2

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCC--CCCEEEE--EcC--cEEEEEEcccCCCCC-
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDT--TERRIME--TRG--RRHTLVIRKVLFTDF-   76 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~--~~~~~~~--~~~--~~~~l~~~~~~~~~~-   76 (106)
                      ..+|.+.. +..+.+..|+.+.|.|.+.+ .|.|. +.|++++..+..  ..++.+.  ...  ....|.|.++...|. 
T Consensus        12 ~~~P~i~~-~~~~~~~~G~~v~l~C~~~g-~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~   89 (122)
T 2cry_A           12 NGPPIISS-TQTQHALHGEKGQIKCFIRS-TPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ   89 (122)
T ss_dssp             CSSCCEEE-ECCCCCCTTSCCCCCEEECC-SSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHH
T ss_pred             ecCCCccC-CCeEEEecCCCEEEEEEEee-cCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCC
Confidence            34566666 56677889999999999999 99986 999999887764  2455442  111  145799999999998 


Q ss_pred             EeeEEEEEcCCCcceEEEEEEEeCCCCCC
Q psy17205         77 GNYSCVAENSMGKTRQYLELSGKYPNAQE  105 (106)
Q Consensus        77 g~y~C~~~~~~~~~~~~~~l~~~~~~~~~  105 (106)
                      |.|.|.+.|..|.....+.|.+..+....
T Consensus        90 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  118 (122)
T 2cry_A           90 TIYNCTAWNSFGSDTEIIRLKEQGSEMSG  118 (122)
T ss_dssp             SCEEEEEECSSCEEEEEECCCCSCSSCCC
T ss_pred             ceEEEEEECCCCeEEEEEEEEECCCCCCC
Confidence            99999999999998888877766554443

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=74.80  Aligned_cols=84  Identities=14%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +..+.+..|+.+.|.|.+.+ .| |.+.|++++..+....++.+.    ...|.|.++...|.|.|.|.+.|..|.....
T Consensus        10 p~~~~v~~G~~v~L~C~~~g-~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   83 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRD-DV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTY   83 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCS-SC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecC-CC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEE
Confidence            44566788999999999988 66 799999999887665555443    2379999999999999999999998888777


Q ss_pred             EEEEEeCCCC
Q psy17205         94 LELSGKYPNA  103 (106)
Q Consensus        94 ~~l~~~~~~~  103 (106)
                      +.|.+...++
T Consensus        84 ~~l~V~~~~~   93 (99)
T 2cr3_A           84 FSVNVSDALP   93 (99)
T ss_dssp             EEECBCSCCS
T ss_pred             EEEEEecCCC
Confidence            7777555443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.64  E-value=8.2e-15  Score=70.78  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+.....         ..|.|.++...|.|.|.|.+.|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~   72 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVG-SPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYND   72 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEEC-SSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEecc-CCCCEEEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcC
Confidence            345666676778889999999999999 99999999999988766432         26999999999999999999999


Q ss_pred             CCcce-EEEEEE
Q psy17205         87 MGKTR-QYLELS   97 (106)
Q Consensus        87 ~~~~~-~~~~l~   97 (106)
                      .|... ..+.|.
T Consensus        73 ~g~~~s~~~~l~   84 (91)
T 3bfo_A           73 RDSQDSKKVEII   84 (91)
T ss_dssp             SCEEECCCEEEE
T ss_pred             CCCEEeeeEEEE
Confidence            88644 234444

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.64  E-value=1.1e-13  Score=74.63  Aligned_cols=92  Identities=18%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee--CCEEcC---CCCCEEEEEcCcEEEEEEcccC-CCCCEee
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK--ETLKLD---TTERRIMETRGRRHTLVIRKVL-FTDFGNY   79 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~--~~~~l~---~~~~~~~~~~~~~~~l~~~~~~-~~~~g~y   79 (106)
                      .+|.+........+..|+.+.|.|.+.+ .|.|.+.|++  ++..+.   ...++..........|.|.++. ..|.|.|
T Consensus        91 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y  169 (190)
T 2wv3_A           91 AAPDITGHKRSENKNEGQDAMMYCKSVG-YPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY  169 (190)
T ss_dssp             CCCEEEEECSEEEEETTSCEEEEEEEEC-SSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEE
T ss_pred             cCCcccccCCcceeeCCCcEEEEEEeCc-cCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEE
Confidence            3456665566677889999999999999 9999999999  776654   3445666665556689999999 7999999


Q ss_pred             EEEEEcCCCcceEEEEEEE
Q psy17205         80 SCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        80 ~C~~~~~~~~~~~~~~l~~   98 (106)
                      .|.+.|..|.....+.|.+
T Consensus       170 ~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          170 ECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEecCCcceeEEEEEE
Confidence            9999999998887776664

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.9e-14  Score=71.28  Aligned_cols=67  Identities=19%  Similarity=0.303  Sum_probs=58.2

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +.+..|+.+.|.|.+ . .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus        23 ~~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             EEEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             EEEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence            667789999999998 5 688999999999988877677666655567899999999999999999988

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.63  E-value=3e-14  Score=88.07  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=79.3

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.
T Consensus       382 ~~~P~~~~~~~~~~~~~G~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~  460 (570)
T 3b43_A          382 KEPPVFRKKPHPVETLKGADVHLECELQG-TPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS  460 (570)
T ss_dssp             ECCCEECSCCCCEEECTTCCEEEEEEEES-SSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCCeeecCCCceeecCCCEEEEEEEEec-CCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEE
Confidence            34566666666677889999999999999 99999999999999887777766665556689999999999999999999


Q ss_pred             cCCCcceEEEEEEEeCC
Q psy17205         85 NSMGKTRQYLELSGKYP  101 (106)
Q Consensus        85 ~~~~~~~~~~~l~~~~~  101 (106)
                      |..|.......|.+..+
T Consensus       461 N~~G~~~~~~~l~v~~~  477 (570)
T 3b43_A          461 NDVGSDTCVGSITLKAP  477 (570)
T ss_dssp             CSSCEEEEEEEEEECCC
T ss_pred             ECCCeEEEEEEEEeccC
Confidence            99998877666664443

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.63  E-value=1.2e-14  Score=72.25  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+......+.+..|+.+.|.|.+.+ .  |.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSK-V--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSS-S--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCC-C--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            3566766677788899999999999877 4  689999999888776677776666677899999999999999999954

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.63  E-value=1.8e-14  Score=72.64  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             CeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC----cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         23 RRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG----RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        23 ~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      ....+.|.+.| .|.|.+.|++++..+....+.......    ....|.|.++...|.|.|.|.+.|..|.....+.+.
T Consensus        21 ~~~~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~   98 (118)
T 1wwc_A           21 LEHCIEFVVRG-NPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   98 (118)
T ss_dssp             CEEEEEEEEEC-SSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             cceEEEEEeee-eCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEE
Confidence            56788899999 999999999999988876655443211    244799999999999999999999999888877765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.62  E-value=1.7e-13  Score=75.12  Aligned_cols=94  Identities=21%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC-CCCCEEEEE-cCcEEEEEEcccCC-CCCEeeEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD-TTERRIMET-RGRRHTLVIRKVLF-TDFGNYSCV   82 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~-~~~~~~~~~-~~~~~~l~~~~~~~-~~~g~y~C~   82 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+. ...++.... ......|.|.++.. .|.|.|.|.
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARG-DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEEC-SSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEcc-CCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            4678888888888999999999999999 8999999999998886 344554443 23446899999999 999999999


Q ss_pred             EEcCCCc-ceEEEEEEEeC
Q psy17205         83 AENSMGK-TRQYLELSGKY  100 (106)
Q Consensus        83 ~~~~~~~-~~~~~~l~~~~  100 (106)
                      +.|..+. ....+.|.+..
T Consensus        84 ~~n~~g~~~~~~~~l~V~~  102 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYE  102 (212)
T ss_dssp             EECSSSCEEEEEEEEEEEC
T ss_pred             EEeCCCCeEEeeEEEEEec
Confidence            9998887 55556665443

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=76.32  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +.+......+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+. ..+....|.|.++...|.|.|.|.+
T Consensus        14 ~~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           14 VHIIEDLEDVDVQEGSSATFRCRISP-ANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             CEEEECCCEEEEETTSCEECCCEEES-TTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred             CeEeccCccEEEeCCCcEEEEEEEcC-CCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE
Confidence            46666777888999999999999999 899999999999888766554443 2244557999999999999999994

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=7.2e-15  Score=74.15  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=70.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecC---CCCeEEEeeCCE-EcCC--CCCEEEEE--cC----cEEEEEEcccCCCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAF---CRPQVIWYKETL-KLDT--TERRIMET--RG----RRHTLVIRKVLFTD   75 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~---p~p~~~w~~~~~-~l~~--~~~~~~~~--~~----~~~~l~~~~~~~~~   75 (106)
                      ..|...+..+.+..|+.+.|.|...+ .   |.|.+.|+++.. .+..  ..++.+..  ..    ....|.|.++...|
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g-~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNG-KELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEET-TTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEec-cCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            45566677788999999999999987 5   689999999741 2211  22333321  11    24689999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         76 FGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      .|.|.|.+.|..|...+.+.|.+..+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999998888888876654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.61  E-value=2e-14  Score=69.93  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .+..+.+..|+.+.|.|.+.+   .|.+.|++++..+....++.... .   .|.|.++...|.|.|.|.+.|..|....
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~---~p~v~W~k~g~~~~~~~~~~~~~-~---~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD---AAVISWTKDGVHLGPNNRTVLIG-E---YLQIKGATPRDSGLYACTAARTVDSETW   79 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT---TCEEEEEETTEEECCCSSEEEET-T---EEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC---CCEEEEEECCEECCCCceEEEeC-C---EEEECcCCcccCEEEEEEEccCCCcEEE
Confidence            345677889999999998866   47899999999887766655432 2   7999999999999999999999988777


Q ss_pred             EEEEEEeCC
Q psy17205         93 YLELSGKYP  101 (106)
Q Consensus        93 ~~~l~~~~~  101 (106)
                      .+.|.+..+
T Consensus        80 ~~~l~V~~~   88 (95)
T 4hwu_A           80 IFMVNVTDA   88 (95)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEeCC
Confidence            777776554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.61  E-value=3.5e-14  Score=76.62  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....  +...........|.|.++...|.|.|.|.+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISG-FPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA   82 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEe-cCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEE
Confidence            3567777777888999999999999999 8999999999998776542  444444455678999999999999999999


Q ss_pred             EcCCCcceEEEEEEE
Q psy17205         84 ENSMGKTRQYLELSG   98 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~   98 (106)
                      .+..+.......+.+
T Consensus        83 ~n~~~~~~~~~~l~v   97 (194)
T 2a38_A           83 TNGSGQATSTAELLV   97 (194)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EcCCceEeEEEEEEE
Confidence            998777666555553

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.61  E-value=2.4e-14  Score=70.89  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=62.3

Q ss_pred             cceeeccCCe-EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERR-IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~-~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ++.|...... +.+..|+.+.|.|.+ + .|.+.+.|++++..+... .++.+...+....|.|.++...|.|.|.|.+.
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~-~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-S-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-c-CCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC
Confidence            3455444443 778899999999999 7 788999999999888776 56666655667789999999999999999994


Q ss_pred             c
Q psy17205         85 N   85 (106)
Q Consensus        85 ~   85 (106)
                      +
T Consensus        93 ~   93 (104)
T 1pd6_A           93 G   93 (104)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=6.3e-14  Score=70.17  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC----------CEEEEEcCcEEEEEEcccCCC
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE----------RRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~----------~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      ..++.+......+.+..|+.+.|.|...+   .|.+.|++++..|....          ++.+...+..+.|.|.++...
T Consensus         6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~---~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~   82 (112)
T 2e6q_A            6 SGTARLVAGLEDVQVYDGEDAVFSLDLST---IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ   82 (112)
T ss_dssp             CSCCCEEECCCCEEEETTCEEEEEEEESS---CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCST
T ss_pred             cCCcEEecCCCCeEEcCCCcEEEEEEECC---CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHH
Confidence            34567777888899999999999999976   55788999999998776          767666666788999999999


Q ss_pred             CCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         75 DFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.|.|.|...+..   .....|.+..+
T Consensus        83 D~G~Y~~~~~~~~---~ssA~L~V~~~  106 (112)
T 2e6q_A           83 DSGALVGFSCPGV---QDSAALTIQES  106 (112)
T ss_dssp             TCSEEEEEEETTE---EEEEEEEEECS
T ss_pred             HCccEEEEEECCe---eEEEEEEEeCC
Confidence            9999988665532   33444444333

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.60  E-value=6.2e-14  Score=80.64  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+... +....|.|.++...|.|.|.|.+.|..|...
T Consensus       228 ~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  306 (317)
T 2y25_A          228 LPDVVTIQEGKALNLTCNVWG-DPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSET  306 (317)
T ss_dssp             CCSEEEEETTSBBCEEEEEEC-SSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CCccEEEEcCCEEEEEEEEec-CCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEE
Confidence            344577889999999999999 99999999999988877766655444 5566899999999999999999999999888


Q ss_pred             EEEEEEEeCC
Q psy17205         92 QYLELSGKYP  101 (106)
Q Consensus        92 ~~~~l~~~~~  101 (106)
                      ..+.|.+..|
T Consensus       307 ~~~~l~V~~P  316 (317)
T 2y25_A          307 SDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEcC
Confidence            8888776543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.59  E-value=8.6e-14  Score=69.10  Aligned_cols=90  Identities=18%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCCEEcCCCCCEEEEEcC--------cEEEEEEcccCCCC
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKETLKLDTTERRIMETRG--------RRHTLVIRKVLFTD   75 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~~~l~~~~~~~~~~~~--------~~~~l~~~~~~~~~   75 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .  +.+.+.|++++..+............        ....|.|.++...|
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAAS-SSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEE-SCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEec-CCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            3567777777788889999999999996 4  45799999999887654211111110        13579999999999


Q ss_pred             CEeeEEEEEcCCCcc-eEEEEE
Q psy17205         76 FGNYSCVAENSMGKT-RQYLEL   96 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~-~~~~~l   96 (106)
                      .|.|.|.+.|..|.. ...+.|
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l  109 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXL  109 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEE
Confidence            999999999988763 234443

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.59  E-value=8.6e-15  Score=73.70  Aligned_cols=87  Identities=24%  Similarity=0.334  Sum_probs=63.5

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEEEEEE--cccCCCCCE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRHTLVI--RKVLFTDFG   77 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~~l~~--~~~~~~~~g   77 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....     +......+....+.+  .++...|.|
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEG-RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEE-ESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCc-cCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            34677777777888899999999999999 9999999999998876432     122222221212222  245689999


Q ss_pred             eeEEEEEcCCCcceE
Q psy17205         78 NYSCVAENSMGKTRQ   92 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~   92 (106)
                      .|.|.+.|..|...+
T Consensus        86 ~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           86 VYVCVARNYLGEAVS  100 (117)
T ss_dssp             EEEEEEEETTEEEEC
T ss_pred             EEEEEEEeCccceEe
Confidence            999999999887664

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.59  E-value=4.8e-14  Score=76.33  Aligned_cols=84  Identities=21%  Similarity=0.226  Sum_probs=70.9

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcc-cCCCCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK-VLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ....+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.+.+ +...|.|.|.|.+.|..|.....
T Consensus       112 ~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~  190 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSG-KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT  190 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEE-ESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CeEEEeCCCEEEEEEEEEe-cCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEE
Confidence            3466778999999999999 999999999999888876666666555667899999 99999999999999999988777


Q ss_pred             EEEEEe
Q psy17205         94 LELSGK   99 (106)
Q Consensus        94 ~~l~~~   99 (106)
                      +.|.+.
T Consensus       191 ~~l~V~  196 (197)
T 2j8h_A          191 VELDVA  196 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            776643

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.59  E-value=3.6e-14  Score=83.99  Aligned_cols=87  Identities=29%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+........+..|+.+.|.|.+.| .|.|.+.|++++..+....++.+.. +   .|.|..+...|.|.|.|.+.|.
T Consensus       295 ~P~~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~-~---~L~i~~v~~~D~G~Y~C~A~N~  369 (384)
T 3kld_A          295 QPNWVQIINDIHVAMEESVFWECKANG-RPKPTYRWLKNGDPLLTRDRIQIEQ-G---TLNITIVNLSDAGMYQCVAENK  369 (384)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEE-ESCCEEEEEETTEECCCBTTEEEET-T---EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCccccCCCceEecCCCCEEEEeECCc-cCCCeEEEEECCEECCCCccEEEeC-C---EEEEeecChhhCEEEEEEEEeC
Confidence            455555556677889999999999999 9999999999999887766665433 2   7999999999999999999999


Q ss_pred             CCcceEEEEEEE
Q psy17205         87 MGKTRQYLELSG   98 (106)
Q Consensus        87 ~~~~~~~~~l~~   98 (106)
                      .|...+...|.+
T Consensus       370 ~G~~~~~a~L~V  381 (384)
T 3kld_A          370 HGVIFSSAELSV  381 (384)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CceEEeceEEEE
Confidence            998888777664

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.59  E-value=8.3e-14  Score=86.12  Aligned_cols=92  Identities=28%  Similarity=0.318  Sum_probs=76.7

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.|......+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|
T Consensus         4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g-~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (570)
T 3b43_A            4 EPPYFIEPLEHVEAAIGEPITLQCKVDG-TPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN   82 (570)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEEEEEES-SSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcceEECCceEEcCCCEEEEEEEEcc-CCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence            4667777777888999999999999999 999999999999888776666665555567899999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy17205         86 SMGKTRQYLELSG   98 (106)
Q Consensus        86 ~~~~~~~~~~l~~   98 (106)
                      ..|.......+.+
T Consensus        83 ~~g~~~~~~~l~v   95 (570)
T 3b43_A           83 SVGAVASSAVLVI   95 (570)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEE
Confidence            9887665555543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.58  E-value=6.2e-14  Score=68.46  Aligned_cols=81  Identities=22%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             ccCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+..+.+..|+.+.|.|.+. + .|.+.+.|++++...... .. ....+   .|.|.++...|.|.|.|.+.|..|..
T Consensus        15 ~~~~~~~v~~G~~v~l~C~~~~~-~p~~~v~W~k~~~~~~~~-~~-~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~   88 (98)
T 1gl4_B           15 EEQRSQSVRPGADVTFICTAKSK-SPAYTLVWTRLHNGKLPS-RA-MDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMD   88 (98)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEES-SSCCEEEEEEGGGBCCCT-TE-EEETT---EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eCCCCeEEecCCCEEEEEeCCCC-CCCcEEEEEeCCCCCCCc-ee-ecCCC---EEEEeCCChhhCEEEEEEecCCCCcc
Confidence            345667888999999999998 5 789999999975433322 22 22223   79999999999999999999999887


Q ss_pred             eEEEEEEE
Q psy17205         91 RQYLELSG   98 (106)
Q Consensus        91 ~~~~~l~~   98 (106)
                      ...+.|.+
T Consensus        89 ~~~~~l~V   96 (98)
T 1gl4_B           89 QGTATLHV   96 (98)
T ss_dssp             EEEEEEEE
T ss_pred             ccEEEEEE
Confidence            77666653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.58  E-value=3.8e-13  Score=72.16  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEee---CC-EEcCCC--CCEEEEEcCcEEEEEEcccC-CCCCE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYK---ET-LKLDTT--ERRIMETRGRRHTLVIRKVL-FTDFG   77 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~---~~-~~l~~~--~~~~~~~~~~~~~l~~~~~~-~~~~g   77 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .| .+.+.|++   ++ ..+...  .++.+...+....|.|.++. ..|.|
T Consensus        82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G  160 (184)
T 3b5h_A           82 GPPRVKAVKSSEHINEGETAMLVCKSES-VPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG  160 (184)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCC-SSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             cCCceeecCCCcEEcCCCcEEEEEEECC-CCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCc
Confidence            4455655566677889999999999999 88 79999999   44 444332  45666655666789999999 89999


Q ss_pred             eeEEEEEcCCCcceEEEEEEE
Q psy17205         78 NYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      .|.|.+.|..|.....+.|.+
T Consensus       161 ~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          161 QYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCcceEEEEEEE
Confidence            999999999998887776664

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.57  E-value=3.7e-13  Score=73.79  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=73.8

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cCcEEEEEEcccC-CCCCEeeEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RGRRHTLVIRKVL-FTDFGNYSCV   82 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~-~~~~g~y~C~   82 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+.......... ......|.|.++. ..|.|.|.|.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATG-DPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEee-CCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            34677777777888899999999999998 8999999999998887653332222 2345679999995 8999999999


Q ss_pred             EEcCCCcceEEEEEEEe
Q psy17205         83 AENSMGKTRQYLELSGK   99 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~~~   99 (106)
                      +.|..|.....+.|.+.
T Consensus        83 a~n~~g~~~~~~~l~V~   99 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVL   99 (212)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEcCCCcEEEEEEEEEe
Confidence            99988876666666543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.57  E-value=2.5e-13  Score=69.04  Aligned_cols=89  Identities=11%  Similarity=0.152  Sum_probs=66.1

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE-c-------CCCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK-L-------DTTERRIME-TRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~-l-------~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      ..+..+.+..|+++.|.|...+ .+.+.+.|++.+.. +       ....++... .......|.|.++...|.|.|.|.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   84 (124)
T 3rbg_A            6 NHTETITVEEGQTLTLKCVTSL-RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCL   84 (124)
T ss_dssp             CSEEEEEEETTSCEEEEEECCC-CTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCccEEEcCCCCEEEEeEEec-cCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEE
Confidence            3455678889999999999999 89999999975532 1       122344332 223456899999999999999999


Q ss_pred             EEcCCCcceEEEEEEEeCCC
Q psy17205         83 AENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~  102 (106)
                      +.|. +.....+.|.+..++
T Consensus        85 a~n~-g~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           85 HYSD-SVSTKEVKVIVLATM  103 (124)
T ss_dssp             EESS-SEEEEEEEEEEECC-
T ss_pred             EEcC-CCCcEEEEEEEEeCC
Confidence            9998 777777777755543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.57  E-value=2.4e-13  Score=84.41  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=80.5

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .|.+........+..|+++.+.|...| .|.|.+.|++++..+....++.+.......+|.|..+...|.|.|.|.+.|.
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g-~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIA-SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEEC-SSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEc-cCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            355555666778889999999999999 9999999999999999888888888788889999999999999999999999


Q ss_pred             CCcceEEEEEEE
Q psy17205         87 MGKTRQYLELSG   98 (106)
Q Consensus        87 ~~~~~~~~~l~~   98 (106)
                      .|..++.+.|.+
T Consensus       561 ~G~~~~~v~l~V  572 (573)
T 3uto_A          561 YGTKEEIVFLNV  572 (573)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999998777653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.57  E-value=1.3e-14  Score=79.64  Aligned_cols=87  Identities=16%  Similarity=0.087  Sum_probs=62.2

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC----CCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT----TERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~----~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .++.+...+....+..|+.+.|.|.+.| .|.|.+.|++++..+..    ..++....++....+.+.++...|.|.|.|
T Consensus       105 ~p~~~~~~~~~~~v~~g~~~~l~C~~~G-~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC  183 (203)
T 4fa8_A          105 KPLTLSVHSERSQFPDFSVLTVTCTVNA-FPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC  183 (203)
T ss_dssp             EEEEEEEEEEECCSSCSCCEEEEEEEEE-ESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEE
T ss_pred             CCceeeecceeEEEcCCCEEEEEEEcCC-CCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEE
Confidence            3455555555666778999999999999 99999999887644422    223444444545567778899999999999


Q ss_pred             EEEcCCCcceEE
Q psy17205         82 VAENSMGKTRQY   93 (106)
Q Consensus        82 ~~~~~~~~~~~~   93 (106)
                      .+.|..|..+..
T Consensus       184 ~A~N~~G~a~~v  195 (203)
T 4fa8_A          184 VGKNDKEEAHGV  195 (203)
T ss_dssp             EEESSSCEEEEE
T ss_pred             EEEcCCCEEEEE
Confidence            999999987753

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.57  E-value=6.1e-14  Score=83.02  Aligned_cols=92  Identities=20%  Similarity=0.141  Sum_probs=75.5

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....+.......   .|.|..+...|.|.|.|.+.|
T Consensus       311 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N  386 (403)
T 3laf_A          311 VPPWFLNHPSNLYAYESMDIEFECAVSG-KPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAEN  386 (403)
T ss_dssp             EEEEEEECCCCEECCTTCCEEECCEEEE-ESCCEEEEEETTEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcEeecCcceEEecCCeEEEEEEEee-ccCCEEEEEECCEECCCCCcEEEecCc---cEEEeccccccCEEEEEEEEc
Confidence            3455555666677888999999999999 999999999999988776555444333   699999999999999999999


Q ss_pred             CCCcceEEEEEEEeCC
Q psy17205         86 SMGKTRQYLELSGKYP  101 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~~  101 (106)
                      ..|.....+.|.+..|
T Consensus       387 ~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          387 EAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             TTEEEEEEEEEECCCC
T ss_pred             CCceEEEEEEEEEeCC
Confidence            9999888888876554

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.57  E-value=2.5e-13  Score=73.49  Aligned_cols=91  Identities=20%  Similarity=0.227  Sum_probs=73.2

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEE-cCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMET-RGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+... .++.... ......|.|.++...|.|.|.|.+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTG-HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEEC-SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEee-cCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            3567777777888999999999999999 899999999999887653 3444433 345568999999999999999999


Q ss_pred             EcCCCcceEEEEEE
Q psy17205         84 ENSMGKTRQYLELS   97 (106)
Q Consensus        84 ~~~~~~~~~~~~l~   97 (106)
                      .|..+.....+.|.
T Consensus        82 ~n~~g~~~~~~~l~   95 (197)
T 2j8h_A           82 TNQGGSVSGTASLE   95 (197)
T ss_dssp             EETTEEEEEEEEEE
T ss_pred             EECCCceeEEEEEE
Confidence            99877766555554

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.56  E-value=4.1e-13  Score=73.62  Aligned_cols=84  Identities=26%  Similarity=0.344  Sum_probs=65.7

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC---CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT---ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~---~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+...   .++..........|.|.++...|.|.|.|.+.
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  187 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASG-NPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT  187 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEEC-SSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecC-CCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEE
Confidence            45555555567788999999999999 999999999999888653   34444444446789999999999999999999


Q ss_pred             cCCCcceE
Q psy17205         85 NSMGKTRQ   92 (106)
Q Consensus        85 ~~~~~~~~   92 (106)
                      |..|...+
T Consensus       188 N~~G~~~s  195 (212)
T 2yd6_A          188 NSAGTRYS  195 (212)
T ss_dssp             ETTEEEEC
T ss_pred             CCCCcccc
Confidence            99887654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.56  E-value=6.1e-14  Score=72.42  Aligned_cols=84  Identities=17%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC----------CCEEEEE---cCcEEEEEEcccC
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT----------ERRIMET---RGRRHTLVIRKVL   72 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~----------~~~~~~~---~~~~~~l~~~~~~   72 (106)
                      .+|.+...+..+.+..|+++.|.|.+.+ .|.|.+.|++++..+...          .+.....   ......|.|.++.
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g-~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEAVG-SPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLV   98 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEEEC-SSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCC
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEEee-ecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCC
Confidence            4678888888888999999999999999 999999999976544321          1222221   1134579999999


Q ss_pred             CCCCEeeEEEEEcCCCcc
Q psy17205         73 FTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~~~   90 (106)
                      ..|.|.|.|.+.|..|..
T Consensus        99 ~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             GGGCEEEEEEEECCTTSS
T ss_pred             cccCEEEEEEEEecCCcc
Confidence            999999999999988765

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.56  E-value=3.5e-13  Score=79.50  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=70.2

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcCC-----CCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLDT-----TERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~~-----~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      |.+.. .....+..|+.+.|.|.+.+ .|.|.+.|+++  +..+..     ..++..........|.|.++...|.|.|.
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g-~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEG-EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEEC-SSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeec-ccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            34444 34456678999999999999 99999999999  877754     34555555445678999999999999999


Q ss_pred             EEEEcCCCcceEEEEEEE
Q psy17205         81 CVAENSMGKTRQYLELSG   98 (106)
Q Consensus        81 C~~~~~~~~~~~~~~l~~   98 (106)
                      |.+.|..|.....+.|.+
T Consensus        80 C~a~n~~g~~~~~~~l~V   97 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDI   97 (389)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEeCCCCcceEEEEEE
Confidence            999999888776666553

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.55  E-value=5.2e-13  Score=72.08  Aligned_cols=84  Identities=19%  Similarity=0.289  Sum_probs=71.5

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCC-CCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF-TDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ....+..|+.+.|.|.+.+ .|.|.+.|++++..+....++..........|.+.++.. .|.|.|.|.+.|..|.....
T Consensus       111 ~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~  189 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIG-RPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI  189 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE
T ss_pred             cceeecCCCeEEEEEEEee-eeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE
Confidence            4456778999999999999 999999999999999887777776666567899999985 89999999999999988877


Q ss_pred             EEEEEe
Q psy17205         94 LELSGK   99 (106)
Q Consensus        94 ~~l~~~   99 (106)
                      +.|.+.
T Consensus       190 ~~l~V~  195 (197)
T 3lcy_A          190 LDVEIQ  195 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            776643

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.55  E-value=2e-13  Score=80.40  Aligned_cols=88  Identities=24%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+........+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.... +   .|.|.++...|.|.|.|.+.|.
T Consensus       294 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~-~---~L~i~~v~~~d~G~Y~C~a~N~  368 (382)
T 1cs6_A          294 QPDWLDVITDTEADIGSDLRWSCVASG-KPRPAVRWLRDGQPLASQNRIEVSG-G---ELRFSKLVLEDSGMYQCVAENK  368 (382)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEE-ESCCEEEEEETTEECCCCSSEEEET-T---EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcccCCCccEEcCCCeEEEEEEeee-ecCCEEEEEECCEECCCCceEEEEC-C---EEEECcCCcccCEEEEEEEEeC
Confidence            445555555677889999999999999 9999999999999988776665432 2   7999999999999999999999


Q ss_pred             CCcceEEEEEEEe
Q psy17205         87 MGKTRQYLELSGK   99 (106)
Q Consensus        87 ~~~~~~~~~l~~~   99 (106)
                      .|.....+.|.+.
T Consensus       369 ~G~~~~~~~l~V~  381 (382)
T 1cs6_A          369 HGTVYASAELTVQ  381 (382)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEe
Confidence            9988887777653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.55  E-value=6.7e-14  Score=75.42  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=70.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ++.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+....+......+   .|.|.++...|.|.|.|.+.|.
T Consensus       100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~  175 (192)
T 2iep_A          100 KPKITRPPINVKIIEGLKAVLPCTTMG-NPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNS  175 (192)
T ss_dssp             EEEEEECCCCEEEETTSCEEECCEEEE-ESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEET
T ss_pred             CCccccCCcceEEeCCCcEEEEEEEec-cCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcC
Confidence            345555555677889999999999999 899999999999988776555443333   6999999999999999999999


Q ss_pred             CCcceE-EEEEEEeCC
Q psy17205         87 MGKTRQ-YLELSGKYP  101 (106)
Q Consensus        87 ~~~~~~-~~~l~~~~~  101 (106)
                      .|.... .+.|.+..+
T Consensus       176 ~g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          176 LGTAYSKLVKLEVEVF  191 (192)
T ss_dssp             TEEEECCCEEEEEEC-
T ss_pred             CCcEEEEEEEEEEEeC
Confidence            887643 455554443

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.55  E-value=3.1e-13  Score=70.39  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEee---------CCEEcCCCCCEEEE-EcCcEEEEEEcccCCCCCEeeEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK---------ETLKLDTTERRIME-TRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~---------~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      ..+..+.+..|+++.|.|...+ .+.+.+.|++         ++..+. ..++... .......|.|.++...|.|.|.|
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~-~~~~~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  120 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKD-HEDSSLQWSNPAQQTLYFGEKRALR-DNRIQLVTSTPHELSISISNVALADEGEYTC  120 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSC-CTTCCEEEECTTCCEEEETTEECSC-CTTEEEEEECSSEEEEEECSCCGGGCEEEEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcC-CCCcEEEEECCCCcEEEECCceecc-cCCEEEecCCCCeEEEEECCCChhhCEEEEE
Confidence            4455688889999999999998 8889999994         333222 2344432 23345689999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEeCC
Q psy17205         82 VAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~  101 (106)
                      .+.|. +.....+.|.+..+
T Consensus       121 ~~~n~-~~~~~~~~L~V~~~  139 (145)
T 1z9m_A          121 SIFTM-PVRTAKSLVTVLGI  139 (145)
T ss_dssp             EECSS-SCEEEEEEEEEECC
T ss_pred             EEEcC-CCceEEEEEEEEeC
Confidence            99998 77777777775544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.54  E-value=3.3e-13  Score=73.97  Aligned_cols=89  Identities=26%  Similarity=0.290  Sum_probs=69.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+... .++.. ..+   .|.|.++...|.|.|.|.+.|.
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~  185 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIG-NPTPNIYWIKNQTKVDMSNPRYSL-KDG---FLQIENSREEDQGKYECVAENS  185 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEEC-SSCCEEEEEETTEECCTTSTTEEE-ETT---EEEECSCCGGGCEEEEEEEEET
T ss_pred             CeeEeCCCceEeecCCeEEEEEEecc-CCCCeEEEEECCeEcccCCCeEEc-cCC---eEEEccCChhhCEEEEEEeecC
Confidence            45555556677788999999999999 999999999999888763 34432 223   7999999999999999999999


Q ss_pred             CCcceEE-EEEEEeCC
Q psy17205         87 MGKTRQY-LELSGKYP  101 (106)
Q Consensus        87 ~~~~~~~-~~l~~~~~  101 (106)
                      .|..... +.|.+...
T Consensus       186 ~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          186 MGTEHSKATNLYVKVR  201 (212)
T ss_dssp             TEEEECCCEEEEEEC-
T ss_pred             CCceeEEEEEEEEEec
Confidence            9887653 55554443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.53  E-value=6.3e-13  Score=67.23  Aligned_cols=84  Identities=17%  Similarity=0.118  Sum_probs=60.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCC--CeEEEeeCCEEcC-----CCCCEEEEEc---CcEEEEEEcccCCCCCEeeEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLD-----TTERRIMETR---GRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~-----~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +..+.+..|+.+.|.|.+.+ .|.  +.+.|++++..+.     ...+......   .....|.|.++...|.|.|.|.+
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g-~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   93 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTART-ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA   93 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEE-CTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEc-CCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEE
Confidence            34467889999999999988 654  5889999876332     1111111111   12447999999999999999999


Q ss_pred             EcCCCcceEEEEEEE
Q psy17205         84 ENSMGKTRQYLELSG   98 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~   98 (106)
                      .|..|.....+.|.+
T Consensus        94 ~n~~g~~~~~~~l~V  108 (122)
T 3s35_X           94 SSGLMTKKNSTFVRV  108 (122)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             ccCCCceEEEEEEEE
Confidence            999988877666663

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.53  E-value=4e-13  Score=72.69  Aligned_cols=83  Identities=18%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCC--CEEEEEcCc-------EEEEEEcccCCCCC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTE--RRIMETRGR-------RHTLVIRKVLFTDF   76 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~-------~~~l~~~~~~~~~~   76 (106)
                      ++.+...+..+.+..|+.+.|.|.+. + .|.+.+.|++++..+....  +........       ...|.|.++...|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQ-GEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEE-SSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhheEEecCCcEEEecccccC-CCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            45666777788899999999999999 8 8999999999998887652  222222111       45799999999999


Q ss_pred             EeeEEEEEcCCCcc
Q psy17205         77 GNYSCVAENSMGKT   90 (106)
Q Consensus        77 g~y~C~~~~~~~~~   90 (106)
                      |.|.|.+.+..+..
T Consensus        81 G~Y~C~~~~~~~~~   94 (195)
T 2c5d_C           81 GQYQCLVFLGHQTF   94 (195)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             cEEEEEEEeCCCce
Confidence            99999999976543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.52  E-value=1.5e-12  Score=76.79  Aligned_cols=91  Identities=21%  Similarity=0.248  Sum_probs=72.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +|.+........+..|+.+.|.|.+.+ .|.+.+.|++++..+....  ++..........|.|.++...|.|.|.|.+.
T Consensus       100 ~P~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  178 (389)
T 2jll_A          100 APKFISNQTIYYSWEGNPINISCDVKS-NPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT  178 (389)
T ss_dssp             EEEECCSCCEEEECTTCCEEEEECEEE-ESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEE
T ss_pred             CCEEecCcceEEeccCCEEEEEEEEEe-cCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEE
Confidence            455555444456788999999999999 9999999999999887643  5555555556689999999999999999999


Q ss_pred             cCCCcceEEEEEEE
Q psy17205         85 NSMGKTRQYLELSG   98 (106)
Q Consensus        85 ~~~~~~~~~~~l~~   98 (106)
                      |..|.....+.+.+
T Consensus       179 N~~G~~~~~~~l~v  192 (389)
T 2jll_A          179 NHIGTRFQEYILAL  192 (389)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEEe
Confidence            99988777666653

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3e-13  Score=66.44  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=64.0

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+.+..|+.+.|.|.+.  .|.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.+.    ...+
T Consensus        19 ~~~~v~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~----~~~~   92 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA--QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSF   92 (102)
T ss_dssp             EEEEEETTCCEEECCBCS--CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE----ECCE
T ss_pred             ccEEEeCCCcEEEEEEec--CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC----cEEE
Confidence            346788999999999986  4788999999999988777777766666678999999999999999998543    3335


Q ss_pred             EEEEeCC
Q psy17205         95 ELSGKYP  101 (106)
Q Consensus        95 ~l~~~~~  101 (106)
                      .|.+..+
T Consensus        93 ~l~V~~p   99 (102)
T 2eo1_A           93 RLQVAGQ   99 (102)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            5554444

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.52  E-value=6.8e-13  Score=76.06  Aligned_cols=91  Identities=20%  Similarity=0.220  Sum_probs=73.6

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEE-EcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIME-TRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+... .++... ..+....|.|.++...|.|.|.|.+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTG-HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEEC-SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeC-CCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            3567777777888999999999999999 899999999999887653 344433 2345668999999999999999999


Q ss_pred             EcCCCcceEEEEEE
Q psy17205         84 ENSMGKTRQYLELS   97 (106)
Q Consensus        84 ~~~~~~~~~~~~l~   97 (106)
                      .|..|.....+.|.
T Consensus        82 ~n~~g~~~~~~~l~   95 (305)
T 2nzi_A           82 TNQGGSVSGTASLE   95 (305)
T ss_dssp             EETTEEEEEEEEEE
T ss_pred             EcCCCCccceEEEE
Confidence            99887766655555

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.52  E-value=5.1e-13  Score=76.71  Aligned_cols=93  Identities=22%  Similarity=0.250  Sum_probs=67.4

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCC-CCCEeeEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLF-TDFGNYSC   81 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~-~~~g~y~C   81 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+... +.....  .+....|.|.++.. .|.|.|.|
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g-~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATG-DPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEEC-SSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEE-eCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            34677877788888999999999999998 899999999998877554 333322  23346899999998 99999999


Q ss_pred             EEEcCCCcceEEEEEEEe
Q psy17205         82 VAENSMGKTRQYLELSGK   99 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~   99 (106)
                      .+.|..|.....+.|.+.
T Consensus        82 ~a~n~~g~~~~~~~l~V~   99 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVL   99 (304)
T ss_dssp             EEECSSCEECCEEEEEEE
T ss_pred             EEECCCCeEEEEEEEEEe
Confidence            999988876655555543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.52  E-value=1.1e-12  Score=70.72  Aligned_cols=87  Identities=20%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             ccceeeccCCeEEeec-CCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          6 ETLKLDTTERRIIETR-GRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~-g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      .+|.+..... ..+.. |+.+.|.|.+.+ .+.  +.+.|++++..+.......     ....|.|.++...|.|.|.|.
T Consensus         2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~-~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~   74 (190)
T 2wv3_A            2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTS-SSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCV   74 (190)
T ss_dssp             -CCEEEECCC-EECCCSSSCEEEEEEEEE-CSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcccccce-EEEccCCceEEEEEEecc-CCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEE
Confidence            4566665444 44555 999999999998 776  7899999998887653321     345799999999999999999


Q ss_pred             EEcCCCcceEEEEEEEeC
Q psy17205         83 AENSMGKTRQYLELSGKY  100 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~  100 (106)
                      +.|. +.....+.|.+..
T Consensus        75 ~~n~-~~~~~~~~l~V~~   91 (190)
T 2wv3_A           75 YHFV-SAPKANATIEVKA   91 (190)
T ss_dssp             EEET-TEEEEEEEEEEEC
T ss_pred             EEeC-CcccccEEEEEec
Confidence            9998 6666666665443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.51  E-value=1e-12  Score=70.31  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC--cEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG--RRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +.+...+..+.+..|+.+.|.|...+ .|.+.+.|++++..+....+.......  ....|.|.++...|.|.|.|.+.+
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEG-MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEES-CSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeC-CCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            45666677788899999999999999 999999999999888776444333322  135799999999999999999998


Q ss_pred             CCCc
Q psy17205         86 SMGK   89 (106)
Q Consensus        86 ~~~~   89 (106)
                      ..+.
T Consensus        82 ~~~~   85 (182)
T 1rhf_A           82 GGET   85 (182)
T ss_dssp             CTTC
T ss_pred             CCCc
Confidence            7654

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.7e-14  Score=69.56  Aligned_cols=72  Identities=25%  Similarity=0.296  Sum_probs=58.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+....         ...|.|.++...|.|.|.|.+.|..
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g-~p~~~v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~   80 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATHSS   80 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSS-CSSCCCCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECCSS
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEcc-CCCCEEEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEeCC
Confidence            45555565667889999999999998 8999999999987776532         2369999999999999999999965


Q ss_pred             Cc
Q psy17205         88 GK   89 (106)
Q Consensus        88 ~~   89 (106)
                      +.
T Consensus        81 ~~   82 (96)
T 2ens_A           81 HG   82 (96)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.51  E-value=4.7e-13  Score=72.46  Aligned_cols=87  Identities=22%  Similarity=0.229  Sum_probs=67.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.+........+..|+.+.|.|.+.+ .|.|.+.|++++..+....+..    .....|.|.++...|.|.|.|.+.|..
T Consensus       114 p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~  188 (201)
T 3s97_C          114 ADIVVQFKDVYALMGQNVTLECFALG-NPVPDIRWRKVLEPMPSTAEIS----TSGAVLKIFNIQLEDEGIYECEAENIR  188 (201)
T ss_dssp             EEEEEECCCEEEETTCCEEEEEEEEE-ESCCEEEEEETTBCCCTTCEEE----TTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CceEecCCceEEecCCcEEEEEEccC-CCCCceEEEeCCCcCCCceeec----CCCCEEEEccCChhhCEEEEEEEEecC
Confidence            33444444677789999999999999 8999999999998666542211    123379999999999999999999999


Q ss_pred             CcceEEEEEEEe
Q psy17205         88 GKTRQYLELSGK   99 (106)
Q Consensus        88 ~~~~~~~~l~~~   99 (106)
                      |.....+.|.+.
T Consensus       189 g~~~~~~~l~V~  200 (201)
T 3s97_C          189 GKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CceeeeEEEEEe
Confidence            888777776643

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.51  E-value=7.5e-13  Score=76.33  Aligned_cols=80  Identities=18%  Similarity=0.063  Sum_probs=64.2

Q ss_pred             EEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .....|+.+.|.|.+.| .|.| .+.|++++..+....   .....   .|.|.++...|.|.|.|.+.|..|.....+.
T Consensus       227 ~~~~~g~~v~l~C~~~g-~P~p~~v~W~~~~~~l~~~~---~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  299 (313)
T 4fqp_A          227 NWYLGQNEATLTCDARS-NPEPTGYNWSTTMGPLPPFA---VAQGA---QLLIRPVDKPINTTLICNVTNALGARQAELT  299 (313)
T ss_dssp             CEETTCCCEEEEEEEEE-ESCCCEEEEEETTBSCCTTE---EEETT---EEEECCCSSCCEEEEEEEEECSSCEEEEEEE
T ss_pred             eeecCCCeEEEEEEecC-CCCCcEEEEEECCEECCCce---EEeCC---EEEECcCChhhCEEEEEEEEeCCCcEEEEEE
Confidence            44556889999999999 9998 699999998776531   11222   6999999999999999999999999888888


Q ss_pred             EEEeCCCC
Q psy17205         96 LSGKYPNA  103 (106)
Q Consensus        96 l~~~~~~~  103 (106)
                      |.+..+||
T Consensus       300 l~V~~~PP  307 (313)
T 4fqp_A          300 VQVKEGPP  307 (313)
T ss_dssp             EEEECCC-
T ss_pred             EEEEeCCC
Confidence            88766654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.50  E-value=6.9e-13  Score=71.21  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=65.6

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      ...+..|+.+.|.|.+.+ .|.+.+.|++++..+....+.....  ....|.+.++...|.|.|.|.+.|..|.....+.
T Consensus       107 ~~~~~~g~~v~l~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  183 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASG-SPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF  183 (189)
T ss_dssp             EEETTSCCCEEEECEEEE-ESCCEEEEEETTEECCCSSSEEEET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cccccCCCcEEEEEEEcc-CCCCeEEEEECCEECcCCCcEEEec--CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEE
Confidence            355667999999999999 8999999999999888765554332  2346999999999999999999999988877766


Q ss_pred             EEE
Q psy17205         96 LSG   98 (106)
Q Consensus        96 l~~   98 (106)
                      |.+
T Consensus       184 l~V  186 (189)
T 2v5t_A          184 LQV  186 (189)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.50  E-value=1.1e-12  Score=71.02  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.| .+.|++++..+......     .....|.|.++.  |.|.|.|.+.
T Consensus       105 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~  176 (195)
T 2c5d_C          105 GLPYFLEEPEDRTVAANTPFNLSCQAQG-PPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAH  176 (195)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEC-SSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEE
T ss_pred             cCCeEEcCCCcEEEcCCCEEEEEeECCC-CCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEE
Confidence            3455655566677888999999999999 9999 99999999887664332     234468888887  7899999999


Q ss_pred             cCCCcce-EEEEEEE
Q psy17205         85 NSMGKTR-QYLELSG   98 (106)
Q Consensus        85 ~~~~~~~-~~~~l~~   98 (106)
                      |..|... ..+.|.+
T Consensus       177 N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          177 NAKGVTTSRTATITV  191 (195)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             cCCCceEEEEEEEEE
Confidence            9988775 5666666

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.49  E-value=4.9e-13  Score=76.26  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=69.1

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEE----cCCCCCEEEEE---cCcEEEEEEcccCCCCCE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLK----LDTTERRIMET---RGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~----l~~~~~~~~~~---~~~~~~l~~~~~~~~~~g   77 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.|. +.|++++..    +..........   ......|.|.++...|.|
T Consensus       187 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g-~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G  265 (290)
T 2o26_X          187 AIPVVSVPETSHLLKKGDTFTVVCTIKD-VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG  265 (290)
T ss_dssp             SCCEEECSCSBCCCCTTCCEEEEEEEEE-SSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCE
T ss_pred             CCCccccCCCcceEecCCcEEEEEEEec-CCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCe
Confidence            4556655555567788999999999999 89986 999998865    23322222221   122457999999999999


Q ss_pred             eeEEEEEcCCCcceEEEEEEEeC
Q psy17205         78 NYSCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      .|.|.+.|..|.....+.|.+..
T Consensus       266 ~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          266 VFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEEEEEECSSCEEEEEEEECC--
T ss_pred             EEEEEEeCCCCcEEEEEEEEEEe
Confidence            99999999999888777776543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.49  E-value=1.3e-12  Score=72.70  Aligned_cols=89  Identities=20%  Similarity=0.205  Sum_probs=65.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEee----CCEEcCCCCCE-E-EEE------cCcEEEEEEcccCCCCCEeeEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYK----ETLKLDTTERR-I-MET------RGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~----~~~~l~~~~~~-~-~~~------~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .....+..|+.+.|.|.+.+ .|.+.+.|++    ++..+...... . ...      ......|.|.++...|.|.|.|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~-~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYS-DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEEC-SSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CccceecCCCEEEEEEEEec-CCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            44566778999999999999 9999999999    77666543221 1 110      1124579999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEeCCCC
Q psy17205         82 VAENSMGKTRQYLELSGKYPNA  103 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~  103 (106)
                      .+.|..|.....+.|.+..+++
T Consensus       200 ~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          200 RATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             EEECSSCEEEEEEEEEC-----
T ss_pred             EEecCcceEEEEEEEEecCCCC
Confidence            9999999888888887544433

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.49  E-value=2.5e-13  Score=74.93  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=65.3

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....+.. .........|.|.++...|.|.|.|.+.|..+.....
T Consensus        27 ~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGG-NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEE-ESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eeEEEccCCCEEEEEeccc-CCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCccccc
Confidence            5677889999999999999 8999999999998876543221 1111223479999999999999999999988777666


Q ss_pred             EEEEEeC
Q psy17205         94 LELSGKY  100 (106)
Q Consensus        94 ~~l~~~~  100 (106)
                      +.+.+..
T Consensus       106 ~~l~V~~  112 (231)
T 3ojm_B          106 YHLDVVE  112 (231)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            6666443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.49  E-value=3.6e-12  Score=68.63  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=68.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEee-CCEEcC-CCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYK-ETLKLD-TTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~-~~~~l~-~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ..+...+....+..|+.+.|.|.+.+ .+ .+.+.|++ ++..+. ...++.... ......|.|.++...|.|.|.|.+
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~-~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            3 LQVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEECC-CSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEEEecCCCcEEcCCCCEEEEEECCC-CCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            34555666778889999999999998 76 78999999 777666 344554432 244668999999999999999999


Q ss_pred             EcCCC-cceEEEEEEEe
Q psy17205         84 ENSMG-KTRQYLELSGK   99 (106)
Q Consensus        84 ~~~~~-~~~~~~~l~~~   99 (106)
                      .+..+ .....+.|.+.
T Consensus        82 ~~~~~~~~~~~~~l~v~   98 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIF   98 (191)
T ss_dssp             EETTTEEEEEEEEEEEE
T ss_pred             EcCCCcceEEEEEEEee
Confidence            99873 44445555543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.49  E-value=1.1e-12  Score=74.69  Aligned_cols=89  Identities=13%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-----cCcEEEEEEcccCCCCCEeeEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-----RGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      +.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++.............     ......|.|.++...|.|.|.|.
T Consensus       182 p~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  260 (289)
T 3mjg_X          182 INVSVNAVQTVVRQGENITLMCIVIG-NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN  260 (289)
T ss_dssp             CCCEEEESCSEEETTSCEEEEEEEES-CSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEE
T ss_pred             CCcEEeCCcceeEcCCCEEEEEEECC-CCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEE
Confidence            33443334456779999999999999 9999999997765433221111111     12345799999999999999999


Q ss_pred             EEcCCCcceEEEEEE
Q psy17205         83 AENSMGKTRQYLELS   97 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~   97 (106)
                      +.|..|.......|.
T Consensus       261 a~N~~G~~~~~~~l~  275 (289)
T 3mjg_X          261 VTESVNDHQDEKAIN  275 (289)
T ss_dssp             EEETTTTEEEEEEEE
T ss_pred             eecCCCCceeEEEEE
Confidence            999999988776666

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.49  E-value=1.9e-12  Score=76.37  Aligned_cols=80  Identities=21%  Similarity=0.230  Sum_probs=66.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ++.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....          ..|.|.++...|.|.|.|.+.|.
T Consensus       307 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~i~W~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~N~  375 (388)
T 2v5m_A          307 PLSAKIDPPTQTVDFGRPAVFTCQYTG-NPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRND  375 (388)
T ss_dssp             EEEEEEESSEEEECTTSCEEEEEEEEE-ECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECS
T ss_pred             CCccccCCCcEEecCCCCEEEEEEecc-ccCCeEEEEECCEECccCC----------CEEEEecCChhhCEEEEEEEEcC
Confidence            344444556677889999999999999 9999999999998876532          26999999999999999999999


Q ss_pred             CCcceEEEEEE
Q psy17205         87 MGKTRQYLELS   97 (106)
Q Consensus        87 ~~~~~~~~~l~   97 (106)
                      .|.....+.|.
T Consensus       376 ~G~~~~~~~l~  386 (388)
T 2v5m_A          376 RESAEASAELK  386 (388)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCcEEEEEEEE
Confidence            99888877765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.49  E-value=3.2e-12  Score=73.24  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcc-cCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK-VLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....++..........|.+.+ +...|.|.|.|.+.|..|.....+
T Consensus       113 ~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~  191 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSG-KPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV  191 (305)
T ss_dssp             CEEEETTCCEEEEEEEEE-ESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEE
T ss_pred             cEEecCCCEEEEEEEECC-CCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEE
Confidence            456778999999999999 999999999999888776666666555567899999 999999999999999998887777


Q ss_pred             EEEEe
Q psy17205         95 ELSGK   99 (106)
Q Consensus        95 ~l~~~   99 (106)
                      .+.+.
T Consensus       192 ~l~v~  196 (305)
T 2nzi_A          192 ELDVA  196 (305)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66644

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.48  E-value=2.9e-13  Score=77.11  Aligned_cols=82  Identities=21%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      ..+..|+.+.|.|.+.+ .|.|.+.|++++..+....++....  ....|.|.++...|.|.|.|.+.|..|.....+.+
T Consensus       204 ~~~~~g~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (291)
T 2wim_A          204 ATAERGEEMTFSCRASG-SPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  280 (291)
T ss_dssp             CCSSSCCEEEEECBCCC-BSCCEEEEEETTEECCCTTTEEECS--TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceecCCCeEEEEEEeec-CCCCeEEEEECCEECcCCccEEEcC--CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence            45667999999999999 8999999999999887765554322  23479999999999999999999999999888877


Q ss_pred             EEeCC
Q psy17205         97 SGKYP  101 (106)
Q Consensus        97 ~~~~~  101 (106)
                      .+..+
T Consensus       281 ~v~~~  285 (291)
T 2wim_A          281 QVFVQ  285 (291)
T ss_dssp             EC---
T ss_pred             EEEEe
Confidence            74443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.48  E-value=1.4e-12  Score=74.26  Aligned_cols=83  Identities=24%  Similarity=0.306  Sum_probs=65.3

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ...+..|+.+.|.|.+.+ .|.|.+.|++++..+.....  ...........|.|.++...|.|.|.|.+.|..|.....
T Consensus       205 ~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  283 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADG-FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS  283 (291)
T ss_dssp             EEETTSCCCEEEEEEEEE-ESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccccccCceEEEEEEEEE-eCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEE
Confidence            456778999999999999 99999999999988876531  112222224479999999999999999999999988777


Q ss_pred             EEEEEe
Q psy17205         94 LELSGK   99 (106)
Q Consensus        94 ~~l~~~   99 (106)
                      +.|.+.
T Consensus       284 ~~l~V~  289 (291)
T 1qz1_A          284 IHLKVF  289 (291)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.48  E-value=1e-12  Score=77.58  Aligned_cols=86  Identities=23%  Similarity=0.318  Sum_probs=69.4

Q ss_pred             ccceeeccCCe-EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERR-IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~-~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+.. ..+..|+.+.|.|.+.+ .|.|.+.|++++..+... ++.... +   .|.|.++...|.|.|.|.+.
T Consensus       307 ~~P~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~-~~~~~~-~---~L~i~~~~~~d~G~Y~C~a~  380 (395)
T 1bih_A          307 SAPKYEQKPEKVIVVKQGQDVTIPCKVTG-LPAPNVVWSHNAKPLSGG-RATVTD-S---GLVIKGVKNGDKGYYGCRAT  380 (395)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEE-ESCCCCEEEETTEECCSS-SEEEET-T---EEEESSCCSTTCEEEEEEEE
T ss_pred             cCCccccCCCcceEecCCCeEEEEEEECc-ccCCeeEEEECCEECCCC-ceEEEC-C---EEEEeeCCcccCEEEEEEEE
Confidence            34555554544 67889999999999999 999999999999888765 444332 2   79999999999999999999


Q ss_pred             cCCCcceEEEEEE
Q psy17205         85 NSMGKTRQYLELS   97 (106)
Q Consensus        85 ~~~~~~~~~~~l~   97 (106)
                      |..|.....+.|.
T Consensus       381 N~~G~~~~~~~l~  393 (395)
T 1bih_A          381 NEHGDKYFETLVQ  393 (395)
T ss_dssp             ETTEEEEEEEEEE
T ss_pred             ccCCCceEEEEEE
Confidence            9999887776665

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.48  E-value=6.1e-12  Score=71.61  Aligned_cols=92  Identities=21%  Similarity=0.284  Sum_probs=73.6

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+.+...+..+.+..|+.+.|.|.+.+ .|. .+.|++ ++..+....++.....+....|.|.++...|.|.|.|.+.
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~-~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~   80 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIG-EPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT   80 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEES-CCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeC-CCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEe
Confidence            4567777888889999999999999998 764 899998 6667766667766666667789999999999999999999


Q ss_pred             cCCCcce-EEEEEEEe
Q psy17205         85 NSMGKTR-QYLELSGK   99 (106)
Q Consensus        85 ~~~~~~~-~~~~l~~~   99 (106)
                      +..|... ..+.+.+.
T Consensus        81 n~~g~~~~~~~~l~v~   96 (291)
T 2wim_A           81 DAKGQTQEATVVLEIY   96 (291)
T ss_dssp             CSSSCEEEEEEEEEEE
T ss_pred             cccCceEEEEEEEEec
Confidence            9877653 34455443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.47  E-value=1.1e-12  Score=76.75  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-------CcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      ...|+.+.+.|.+.| .|.|.+.|++++..+...........       .....|.|..+...|.|.|.|.+.|..|...
T Consensus       258 ~~~g~~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  336 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDG-QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS  336 (347)
T ss_dssp             CEESSSEEEEEEEEE-ESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CccCceEEEEEEeee-cCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence            456899999999999 89999999999998886544433221       1245799999999999999999999999888


Q ss_pred             EEEEEEEeCC
Q psy17205         92 QYLELSGKYP  101 (106)
Q Consensus        92 ~~~~l~~~~~  101 (106)
                      ..+.+.+..+
T Consensus       337 ~~~~l~V~~~  346 (347)
T 2ifg_A          337 ASIMAAFMDN  346 (347)
T ss_dssp             EEEEECSCCC
T ss_pred             eEEEEEecCC
Confidence            8877775543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.47  E-value=1.8e-12  Score=69.81  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=67.0

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+.. ..++.....  ...|.|.++...|.|.|.|.+
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~   81 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVES-YPQPEISWTRNKILIKLFDTRYSIREN--GQLLTILSVEDSDDGIYCCTA   81 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEE-ESCCEEEEEETTEECCTTCTTEEEEGG--GTEEEESSCCGGGCEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCC-CCCCeEEEEECCEEccccCccEEEcCC--ccEEEEcCCCcccCeEEEEEE
Confidence            44567777777888999999999999998 89999999999988765 334443332  236999999999999999999


Q ss_pred             EcCCCcc
Q psy17205         84 ENSMGKT   90 (106)
Q Consensus        84 ~~~~~~~   90 (106)
                      .+..+..
T Consensus        82 ~~~~~~~   88 (192)
T 2iep_A           82 NNGVGGA   88 (192)
T ss_dssp             ECSSSCC
T ss_pred             EcCCCce
Confidence            9987763

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.47  E-value=6.5e-13  Score=72.50  Aligned_cols=85  Identities=24%  Similarity=0.333  Sum_probs=64.6

Q ss_pred             ccCCeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+....+..|+.+.|.|.+ .+ .|.+.+.|++++..+...........+   .|.|..+...|.|.|.|.+.|..|..
T Consensus       116 ~~~~~~~~~~g~~~~l~C~~~~~-~p~~~v~W~~~~~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~  191 (212)
T 2v9r_A          116 QNPSDVMVAVGEPAVMECQPPRG-HPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGER  191 (212)
T ss_dssp             BCCCCEEEETTSCEEEECBCCCE-ESCCEEEEEETTEEECTTSTTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCceEecCCCcEEEEEecCCC-CCCCEEEEEECCccCCCCcceEEccCC---eEEEeeCCHhhCeeEEEEEecccCce
Confidence            33445677899999999998 77 899999999999888764332222223   79999999999999999999998875


Q ss_pred             eE-EEEEEEeC
Q psy17205         91 RQ-YLELSGKY  100 (106)
Q Consensus        91 ~~-~~~l~~~~  100 (106)
                      .. .+.|.+..
T Consensus       192 ~s~~~~l~V~~  202 (212)
T 2v9r_A          192 ESEVAELTVLE  202 (212)
T ss_dssp             ECCCEEEEEEC
T ss_pred             ecceEEEEEEe
Confidence            54 25555443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.47  E-value=3.1e-12  Score=72.78  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc--CcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .++.+...+....+..|+.+.|.|.+.+..|.+.+.|++++..+...........  .....|.|.++...|.|.|.|.+
T Consensus       185 ~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (289)
T 3ejj_X          185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA  264 (289)
T ss_dssp             CCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEE
T ss_pred             CCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEE
Confidence            3455665566666678999999999987347889999999988765421111000  11347999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCCC
Q psy17205         84 ENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~  102 (106)
                      .|..|...+.+.|.+...+
T Consensus       265 ~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          265 SNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             ECSSCEEEEEEEEECC---
T ss_pred             EcCCCCccccEEEEEEecc
Confidence            9999999988888754443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.47  E-value=4.4e-12  Score=73.02  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             ccceeeccCCe-EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE----c--------CcEEEEEEcccC
Q psy17205          6 ETLKLDTTERR-IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET----R--------GRRHTLVIRKVL   72 (106)
Q Consensus         6 ~~~~~~~~~~~-~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~----~--------~~~~~l~~~~~~   72 (106)
                      .+|.+...... +.+..|+.+.|.|.+.+ .|.|.+.|++++..+..........    .        .....|.|.++.
T Consensus       207 ~~P~~~~~~~~~~~~~~g~~v~l~C~~~g-~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  285 (315)
T 1itb_B          207 TRPVIVSPANETMEVDLGSQIQLICNVTG-QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE  285 (315)
T ss_dssp             CCCEECSCCSEEEECCSSSCEEEEEEEEE-CTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred             CCCEEecCCCCcEEEeCCCcEEEEEEEec-CCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecC
Confidence            34555544443 57888999999999999 9999999999999887654321110    0        123479999999


Q ss_pred             CCC-CEeeEEEEEcCCCcceEEEEEEE
Q psy17205         73 FTD-FGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        73 ~~~-~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      ..| .|.|.|.+.|..|.....+.|.+
T Consensus       286 ~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          286 SRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             GGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             HHHcCCceEEEEecCCCceeEEEEEEe
Confidence            999 99999999999999988887764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.46  E-value=1.5e-12  Score=74.70  Aligned_cols=78  Identities=21%  Similarity=0.291  Sum_probs=64.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      ..+..|+.+.|.|.+.+ .|.| .+.|++++..+....++...  .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus       231 ~~v~~G~~~~l~C~~~~-~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  307 (312)
T 2y23_A          231 WEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  307 (312)
T ss_dssp             EEEETTTEEEEEEEEES-CCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEE
T ss_pred             EEEeCCCEEEEEEEEcC-CCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeE
Confidence            56779999999999999 8888 99999999887754444333  22458999999999999999999999999888777


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |.
T Consensus       308 l~  309 (312)
T 2y23_A          308 LV  309 (312)
T ss_dssp             EC
T ss_pred             EE
Confidence            65

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.46  E-value=2.6e-12  Score=69.85  Aligned_cols=91  Identities=18%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCC-----CeEEEee-CCEEcCCCCCEEEEEc---CcEEEEEEcccCCCCCEeeE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCR-----PQVIWYK-ETLKLDTTERRIMETR---GRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~-----p~~~w~~-~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~   80 (106)
                      +......+.+..|+.+.|.|...+ .+.     +.+.|++ ++.......+..+...   .....|.|.++...|.|.|.
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~-~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDR-RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYR   83 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECT-TC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecC-CCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEE
Confidence            334455678889999999999988 776     7899999 4443333334433321   13468999999999999999


Q ss_pred             EEEEcCCCcceEEEEEEEeCC
Q psy17205         81 CVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        81 C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.+.+..+.....+.|.+..+
T Consensus        84 C~~~~~~~~~~~~~~l~V~~~  104 (202)
T 3bp6_B           84 CLVICGAAWDYKYLTVKVKAS  104 (202)
T ss_dssp             EEEEETTEEEEEEEEEEEEBC
T ss_pred             EEEEeCCCcceEEEEEEecCC
Confidence            999998876666676665543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.46  E-value=5.2e-13  Score=73.22  Aligned_cols=85  Identities=19%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             eEEeecCCeEEEEEE---EeecCCCCeEEEeeCCEEcC-----------------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         16 RIIETRGRRHTLIFF---FHFAFCRPQVIWYKETLKLD-----------------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~---~~~~~p~p~~~w~~~~~~l~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      .+.+..|+.+.|.|.   ..+ .|.+.+.|++++....                 ...++..........|.|.++...|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~-~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSL-GPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTC-STTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCC-CCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            356789999999995   445 6889999998752211                 0122333344556789999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         76 FGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      .|.|.|.+.|..|.....+.|.+.+|
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p  106 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKP  106 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCC
Confidence            99999999999888777776665443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.4e-12  Score=72.57  Aligned_cols=86  Identities=23%  Similarity=0.311  Sum_probs=65.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ...+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....+. ..........|.|.++...|.|.|.|.+.+..+....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAG-NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEEC-SSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecC-CCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE
Confidence            34578889999999999999 899999999999887654221 1111122347999999999999999999998877766


Q ss_pred             EEEEEEeC
Q psy17205         93 YLELSGKY  100 (106)
Q Consensus        93 ~~~l~~~~  100 (106)
                      .+.+.+..
T Consensus       101 ~~~l~V~~  108 (241)
T 3grw_A          101 TYTLDVLE  108 (241)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            66666443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.45  E-value=2.7e-12  Score=75.96  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+.....  ......+   .|.|.++...|.|.|.|.+
T Consensus       311 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~v~W~~~g~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a  386 (404)
T 3p3y_A          311 AAPYWLDEPKNLILAPGEDGRLVCRANG-NPKPTVQWMVNGEPLQSAPPNPNREVAGD---TIIFRDTQISSRAVYQCNT  386 (404)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEE-ESCCEEEEEETTEEGGGSCCCTTEEEETT---EEEESSCCSSCCCEEEEEE
T ss_pred             CCCeeeccCCcceeecCCcEEEEEEccc-cCCCceEEEECCEecCCCCCCceEEecCC---EEEEeecCHHHCEEEEEEE
Confidence            3455555666677889999999999999 99999999999998865421  1122222   7999999999999999999


Q ss_pred             EcCCCcceEEEEEEE
Q psy17205         84 ENSMGKTRQYLELSG   98 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~   98 (106)
                      .|..|.....+.|.+
T Consensus       387 ~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          387 SNEHGYLLANAFVSV  401 (404)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEE
Confidence            999998887777664

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.44  E-value=4.1e-12  Score=69.80  Aligned_cols=71  Identities=8%  Similarity=-0.001  Sum_probs=59.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC--cEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG--RRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+.+.+|+.+.|.|.+.++.|.|.+.|++++..+....++.+....  ....|.|.++...|.|.|.|.+.|.
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng   83 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG   83 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC
Confidence            5778899999999998642699999999999999877666555433  4567999999999999999999983

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.44  E-value=5.3e-12  Score=65.02  Aligned_cols=77  Identities=17%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc-CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL-DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      .+...+..+.+..|+.+.|.|...+ .  +.+.|+++.     ..+ ....++.....+....|.|.++..+|.|.|.|.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~-~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   95 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNH-S--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCK   95 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-S--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCC-C--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEE
Confidence            4455677788899999999999988 6  889999872     122 234567666556677899999999999999999


Q ss_pred             EEcCCC
Q psy17205         83 AENSMG   88 (106)
Q Consensus        83 ~~~~~~   88 (106)
                      +.|..|
T Consensus        96 a~n~~g  101 (133)
T 3khq_A           96 QKCDSA  101 (133)
T ss_dssp             ESSCC-
T ss_pred             EEeCCC
Confidence            998754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.43  E-value=4.7e-12  Score=68.17  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ++.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+...  .++.....+   .|.|.++...|.|.|.|.+.
T Consensus       100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~  175 (191)
T 1epf_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVS-SLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGR  175 (191)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEEC-SSCCEEEEEETTEEGGGGCCTTEEECTTS---CEEETTCCGGGCEEEEEEEE
T ss_pred             CceEecCCCcEeecCCCeEEEEEEECC-CCCCEEEEEECCEEeeccCCceEEEecCC---eEEECCCChhhCEEEEEEEE
Confidence            445555555677889999999999999 999999999999887643  233332222   69999999999999999999


Q ss_pred             cCCCcceEEEE
Q psy17205         85 NSMGKTRQYLE   95 (106)
Q Consensus        85 ~~~~~~~~~~~   95 (106)
                      |..+.......
T Consensus       176 n~~~~~~~~~~  186 (191)
T 1epf_A          176 ILARGEINFKD  186 (191)
T ss_dssp             EGGGTEEEEEE
T ss_pred             EecceeEEEEE
Confidence            98754444333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.42  E-value=7.4e-13  Score=79.77  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-EEcCCC---CCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-LKLDTT---ERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-~~l~~~---~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      |.+...+..+.+..|+++.+.|.+ + .|.|.+.|++++ ..+...   .++.....+   ++.|.+++..|.|.|.|.+
T Consensus       342 P~i~~~~~~~~v~~G~~v~L~C~~-~-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a  416 (440)
T 3zyj_A          342 PVIVEPPADLNVTEGMAAELKCRA-S-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMV  416 (440)
T ss_dssp             CCEEECCCCEEECTTSCCEECCEE-S-STTSEEEEECTTSCEEESSSCCSSEEECTTC---CEEESSCCSTTCEEEEEEE
T ss_pred             CcccccccceeeccCceEEEEeec-C-CCCCceEEEeCCCceeeccCCCceEEEccCC---eEEEccCChhhCEEEEEEE
Confidence            455556667888899999999999 6 689999999854 333222   233332222   5999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCCCC
Q psy17205         84 ENSMGKTRQYLELSGKYPNA  103 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~~~  103 (106)
                      .|..|...+.+.+.+...++
T Consensus       417 ~N~~G~~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          417 SNSVGNTTASATLNVTGTHH  436 (440)
T ss_dssp             ECSSCEEEEEEEEEEC----
T ss_pred             EcCCCcEEEEEEEEEecccc
Confidence            99999998888888555443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.42  E-value=1.2e-12  Score=71.79  Aligned_cols=81  Identities=26%  Similarity=0.365  Sum_probs=62.4

Q ss_pred             ccCCeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCC--------CCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTT--------ERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~--------~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      ..+....+..|+.+.|.|.+ .+ .|.+.+.|++++..+...        .+......+   .|.|.++...|.|.|.|.
T Consensus       113 ~~~~~~~~~~g~~v~l~C~~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~  188 (217)
T 2vr9_A          113 VEPKDTRVAKGETALLECGPPKG-IPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG---NLLISNVEPIDEGNYKCI  188 (217)
T ss_dssp             BCCCCEEECTTSCEEECCBCCCE-ESCCEEEEEETTEEECCCCCC---CCCSEEEETTT---EEEESSCCSTTCEEEEEE
T ss_pred             ECCCccEEcCCCeEEEEEECCCC-CCCCeEEEEECCcCCCcccccccccCCcEEecCCC---cEEEeeCCHHHCeEEEEE
Confidence            34445667889999999998 77 899999999999887732        233222222   699999999999999999


Q ss_pred             EEcCCCcceEEEEE
Q psy17205         83 AENSMGKTRQYLEL   96 (106)
Q Consensus        83 ~~~~~~~~~~~~~l   96 (106)
                      +.|..|.......+
T Consensus       189 a~N~~G~~~~~~~~  202 (217)
T 2vr9_A          189 AQNLVGTRESSYAK  202 (217)
T ss_dssp             EEETTEEEECCCEE
T ss_pred             EEcccceeccccEE
Confidence            99999887664333

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.42  E-value=9.6e-12  Score=68.08  Aligned_cols=78  Identities=18%  Similarity=0.205  Sum_probs=59.7

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CE---Ec-C--------CCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TL---KL-D--------TTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~---~l-~--------~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+ .+.+..|+.+.|.|...+ .+.+.+.|++.  +.   .+ .        ...++..........|.|.++...
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDK-LSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSS-TTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCC-CCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            344455 788889999999999998 89999999982  11   11 0        223555544556778999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus        81 D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           81 DEADYYCQSWDGTN   94 (213)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             hCEEEEEEeccCCc
Confidence            99999999999876

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.42  E-value=4e-12  Score=70.05  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.....         ..|.|.++...|.|.|.|.+.|..
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g-~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~  188 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVG-SPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDR  188 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEB-SSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSS
T ss_pred             ceEEECCCceeecCCCcEEEEEEecc-cCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCC
Confidence            45555566677889999999999999 99999999999988876432         268999999999999999999987


Q ss_pred             Ccce-EEEEEE
Q psy17205         88 GKTR-QYLELS   97 (106)
Q Consensus        88 ~~~~-~~~~l~   97 (106)
                      |... ..+.|.
T Consensus       189 g~~~s~~~~l~  199 (218)
T 3k0w_A          189 DSQDSKKVEII  199 (218)
T ss_dssp             CEEECCCEEEE
T ss_pred             CCceeeeEEEE
Confidence            7633 344444

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.42  E-value=5e-12  Score=76.00  Aligned_cols=89  Identities=12%  Similarity=0.057  Sum_probs=63.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+.......... .....|.|.++...|.|.|.|.+.|..|.
T Consensus        51 ~~~~~~~v~V~~G~~v~L~C~v~g-~P~p~i~W~~~~~~l~~~~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~  128 (423)
T 3qs7_E           51 TVYEAAAVEVDVSASITLQVLVDA-PGNISCLWVFKHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATN  128 (423)
T ss_dssp             -----CEEEECSSCCEEEEEECSC-CSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred             ceeccccEEEecCCcEEEEEEEEc-CCCCeEEEEECCCccCccceecccc-ceEEEEEEeecCcccCEEEEEEEEcCCCc
Confidence            334445788999999999999999 9999999999987766532222111 22346999999999999999999999888


Q ss_pred             ceEEEEEEEeC
Q psy17205         90 TRQYLELSGKY  100 (106)
Q Consensus        90 ~~~~~~l~~~~  100 (106)
                      ....+.|.+.+
T Consensus       129 ~~~~~~l~V~~  139 (423)
T 3qs7_E          129 YTILFTVSIRN  139 (423)
T ss_dssp             EEEEEEEEEC-
T ss_pred             EEEEEEEEEec
Confidence            77777666553

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.42  E-value=2.9e-12  Score=73.56  Aligned_cols=88  Identities=19%  Similarity=0.199  Sum_probs=64.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+....+..    .....|.+..+  .|.|.|.|.+.|.
T Consensus       205 ~P~~~~~~~~~~v~~G~~v~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~  277 (304)
T 2yd9_A          205 APRFSILPMSHEIMPGGNVNITCVAVG-SPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSS  277 (304)
T ss_dssp             EEEEEECCCCBCCCTTCCEEEEEEEEE-ESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEET
T ss_pred             CCcEEecCCceEEcCCCeEEEEEEEee-eCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeC
Confidence            345554555566778999999999999 9999999999998887654321    22335666665  5899999999999


Q ss_pred             CCcceEEEEEEEeCC
Q psy17205         87 MGKTRQYLELSGKYP  101 (106)
Q Consensus        87 ~~~~~~~~~l~~~~~  101 (106)
                      .|.....+.|.+..+
T Consensus       278 ~G~~~~~~~l~V~~~  292 (304)
T 2yd9_A          278 LGVIEAVAQITVKSL  292 (304)
T ss_dssp             TEEEEEEEEEC----
T ss_pred             CCcEEEEEEEEEecC
Confidence            998888777775443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.41  E-value=1e-11  Score=66.41  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.| .+.|++++..+.....       ....|.+.++  .|.|.|.|.+.
T Consensus        97 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~  166 (182)
T 1rhf_A           97 GVPFFTVEPKDLAVPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAH  166 (182)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEC-SSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEE
T ss_pred             cCCeEEecCcceEecCCCEEEEEeEecC-CCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEE
Confidence            3456665566677889999999999999 9999 9999999988765321       2346888887  48899999999


Q ss_pred             cCCCcceE-EEEEE
Q psy17205         85 NSMGKTRQ-YLELS   97 (106)
Q Consensus        85 ~~~~~~~~-~~~l~   97 (106)
                      |..|.... .+.|.
T Consensus       167 N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          167 NLKGLASSRTATVH  180 (182)
T ss_dssp             ETTEEEECCCEEEE
T ss_pred             CCCCCcccceEEEE
Confidence            99887643 44444

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.41  E-value=1.4e-11  Score=61.13  Aligned_cols=77  Identities=22%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|.|.++..+|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASK-SISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECC-CCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHH
Confidence            334556678889999999999998 888999999853     1111         1245555544556789999999999


Q ss_pred             CEeeEEEEEcCC
Q psy17205         76 FGNYSCVAENSM   87 (106)
Q Consensus        76 ~g~y~C~~~~~~   87 (106)
                      .|.|.|.+.|..
T Consensus        83 sG~Y~C~~~n~~   94 (108)
T 1jhl_L           83 FAMYICQQHNEY   94 (108)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEEEccCC
Confidence            999999998863

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.40  E-value=2e-12  Score=70.47  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             EEeecCCeEEEEEE-EeecCCCCeEEEeeCCE-EcCCCCCE-------EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         17 IIETRGRRHTLIFF-FHFAFCRPQVIWYKETL-KLDTTERR-------IMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        17 ~~~~~g~~~~~~c~-~~~~~p~p~~~w~~~~~-~l~~~~~~-------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..+..|+.+.|.|. ..+ .|.|.+.|++++. .+......       ..........|.|.++...|.|.|.|.+.|..
T Consensus       114 ~~~~~g~~~~l~C~~~~~-~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  192 (212)
T 1f97_A          114 SSVTIGNRAVLTCSEHDG-SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY  192 (212)
T ss_dssp             SEEETTSCEEEEEECSCC-BSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             cccCCCCeEEEEEEcccC-cCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEcccc
Confidence            45678999999999 677 8999999999998 77653221       11222224469999999999999999999999


Q ss_pred             Ccc--eEEEEEEEeC
Q psy17205         88 GKT--RQYLELSGKY  100 (106)
Q Consensus        88 ~~~--~~~~~l~~~~  100 (106)
                      |..  ...+.|.+..
T Consensus       193 g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          193 GTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SCCEECCCEEEEEES
T ss_pred             CCccccceEEEEEEE
Confidence            887  3355555443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.40  E-value=2.3e-11  Score=66.53  Aligned_cols=80  Identities=18%  Similarity=0.198  Sum_probs=58.9

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCC-EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKET-LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      +.+..|+.+.|.|.+.| .|.|.+.|++.. ..+.   .. ....+....|.|.++...|.|.|.|.+.|..+.....+.
T Consensus        11 ~~~~~G~~v~L~C~~~g-~P~p~i~W~~~~~~~~~---~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~   85 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTG-CESPFFSWRTQIDSPLN---GK-VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (202)
T ss_dssp             EEEETTSCEEEEEEEES-CSSCEEEEEETTCCCCS---SE-EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecC-CCCCeEEEECCCCCCcc---ce-EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence            44558999999999998 899999998843 1111   11 112233557999999999999999999998877666666


Q ss_pred             EEEeCC
Q psy17205         96 LSGKYP  101 (106)
Q Consensus        96 l~~~~~  101 (106)
                      |.+..+
T Consensus        86 l~V~~~   91 (202)
T 1vca_A           86 VEIYSF   91 (202)
T ss_dssp             EEEEBC
T ss_pred             EEEEeC
Confidence            665443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.40  E-value=4e-12  Score=69.27  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=62.2

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE-EEEEE
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ-YLELS   97 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~   97 (106)
                      +..|+.+.|.|.+.+ .| |.+.|++++..+....++.....  ...|.|.++...|.|.|.|.+.|..|...+ .+.|.
T Consensus       122 ~~~g~~v~l~C~~~~-~p-p~i~W~~~g~~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~  197 (208)
T 3r4d_A          122 VKELDSVTLTCLSND-IG-ANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD  197 (208)
T ss_dssp             CCTTCCEEEEEECSC-TT-CEEEEEETTEECCCCSSEEEETT--TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEEC
T ss_pred             EeeCCCEEEEEECCC-CC-CceEEEECCEeCCCCCCeEEcCC--CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeee
Confidence            678999999999988 66 89999999998887666544432  247999999999999999999999888665 45555


Q ss_pred             EeCC
Q psy17205         98 GKYP  101 (106)
Q Consensus        98 ~~~~  101 (106)
                      +..+
T Consensus       198 v~~~  201 (208)
T 3r4d_A          198 IIFD  201 (208)
T ss_dssp             CC--
T ss_pred             EEeC
Confidence            4333

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.39  E-value=1.3e-11  Score=67.25  Aligned_cols=87  Identities=16%  Similarity=0.229  Sum_probs=64.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc------------CCCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL------------DTTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      .+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+            ....++....    ..|.|.++...|.
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~   77 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSG-FSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDN   77 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEES-CSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGC
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCC-CCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccC
Confidence            4556667788899999999999998 899999999876431            1123333332    3799999999999


Q ss_pred             EeeEEEEEcCCC--cceEEEEEEEeC
Q psy17205         77 GNYSCVAENSMG--KTRQYLELSGKY  100 (106)
Q Consensus        77 g~y~C~~~~~~~--~~~~~~~l~~~~  100 (106)
                      |.|.|.+.+..|  .....+.|.+..
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~  103 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLV  103 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEB
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEc
Confidence            999999999866  333455555443

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.39  E-value=1.6e-11  Score=67.46  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=62.0

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEE--------cCcEEEEEEcccCCCCCEeeEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMET--------RGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ...+.+..|+.+.|.|.+.+ .|.  +.+.|++++..+..........        ......|.|.++...|.|.|.|.+
T Consensus       112 ~~~~~v~~G~~v~L~C~~~g-~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  190 (213)
T 2x1w_L          112 SHGIELSVGEKLVLNCTART-ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA  190 (213)
T ss_dssp             CSCEEEETTCCEEEEEEEEE-CTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCeEEcCCCCEEEEEEEEC-CCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence            33457889999999999998 654  4799998876543211100000        112346999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCC
Q psy17205         84 ENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~  101 (106)
                      .|..|.....+.|.+...
T Consensus       191 ~N~~g~~~~~~~l~V~~~  208 (213)
T 2x1w_L          191 SSGLMTKKNSTFVRVHED  208 (213)
T ss_dssp             ECSSCEEEEEEEEEEEC-
T ss_pred             ecCCCcEEEEEEEEEecc
Confidence            999998888777775544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=79.27  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=63.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC---CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT---ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~---~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .+..+.+..|+.+.+.|.+.| .|.|.+.|++++..+...   .++.....   ..+.|.++...|.|.|.|.+.|..|.
T Consensus       391 ~~~~~~v~~G~~v~l~C~~~g-~P~p~i~W~~~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~g~  466 (477)
T 2id5_A          391 KAQQVFVDEGHTVQFVCRADG-DPPPAILWLSPRKHLVSAKSNGRLTVFPD---GTLEVRYAQVQDNGTYLCIAANAGGN  466 (477)
T ss_dssp             SCEEEEEETTCCEEECCCEEE-ESCCEEEEECTTSCBC-------CEECTT---SCEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             ccccEEEeCCCeEEEEEeccc-cCCCEEEEEECCccccccCCCceEEeCCC---CEEEEeeCChHHCEEEEEEEEeCCCc
Confidence            345678889999999999999 999999999998665431   12222222   26999999999999999999999988


Q ss_pred             ceEEEEEEE
Q psy17205         90 TRQYLELSG   98 (106)
Q Consensus        90 ~~~~~~l~~   98 (106)
                      ....+.+.+
T Consensus       467 ~~~~~~l~V  475 (477)
T 2id5_A          467 DSMPAHLHV  475 (477)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            877766654

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.38  E-value=1.2e-10  Score=60.14  Aligned_cols=91  Identities=20%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEE--c---C------------CCCCEEEEEc---CcEEEE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLK--L---D------------TTERRIMETR---GRRHTL   66 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~--l---~------------~~~~~~~~~~---~~~~~l   66 (106)
                      +...+..+.+..|+++.|.|...+ .+.   +.+.|++.+..  +   .            ...++.+...   ....+|
T Consensus         9 V~~~~~~v~~~~G~~v~L~C~~~~-~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL   87 (139)
T 1pko_A            9 VIGPGHPIRALVGDEAELPCRISP-GKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVAL   87 (139)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEES-CCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEE
T ss_pred             EECCCCCEEEEeCCCEEEeeEccC-CCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEE
Confidence            344555678889999999999986 543   68999987631  1   0            0124433321   235689


Q ss_pred             EEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         67 VIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      .|.+++..|.|.|.|.+.+..+.....+.|.+..|
T Consensus        88 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P  122 (139)
T 1pko_A           88 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  122 (139)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecC
Confidence            99999999999999999998776666777776544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.38  E-value=1.1e-12  Score=71.58  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             EeecCCeEEEEEEE-eecCCCCeEEEeeCC--EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         18 IETRGRRHTLIFFF-HFAFCRPQVIWYKET--LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        18 ~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+..|+.+.|.|.+ .+ .|.+.+.|++++  ..+......    ......|.|.++...|.|.|.|.+.|..|.....+
T Consensus       132 ~~~~g~~v~l~C~~~~g-~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~  206 (214)
T 3jz7_A          132 SEEIGNDFKLKCEPKEG-SLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCML  206 (214)
T ss_dssp             CCBTTCCEEEEEECSBC-CSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ceecCCcEEEEecCCCC-CCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEE
Confidence            35679999999999 67 899999999953  333221110    01122799999999999999999999999888888


Q ss_pred             EEEEeCC
Q psy17205         95 ELSGKYP  101 (106)
Q Consensus        95 ~l~~~~~  101 (106)
                      .|.+.+|
T Consensus       207 ~l~V~~P  213 (214)
T 3jz7_A          207 RLDVVPP  213 (214)
T ss_dssp             EECCBCC
T ss_pred             EEEEeCC
Confidence            8876644

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.38  E-value=8.7e-12  Score=68.75  Aligned_cols=88  Identities=17%  Similarity=0.180  Sum_probs=65.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEee----CCEEcCCCCC--EEEEEc-----CcEEEEEEcccCCCCCEeeEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYK----ETLKLDTTER--RIMETR-----GRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~----~~~~l~~~~~--~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      +....+..|+.+.|.|.+.+ .|.+.+.|++    ++..+.....  ......     .....|.|.++...|.|.|.|.
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~-~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  203 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK  203 (231)
T ss_dssp             SCCEEEETTCCEEEECCEEC-SSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEE
T ss_pred             CCceEEEeCCcEEEEEEEec-CCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEE
Confidence            34567788999999999999 9999999999    6666544322  111111     1123699999999999999999


Q ss_pred             EEcCCCcceEEEEEEEeCCC
Q psy17205         83 AENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~~~  102 (106)
                      +.|..|.....+.|.+..++
T Consensus       204 a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          204 VSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             EEETTEEEEEEEEEEEECCC
T ss_pred             EEeccceEeeEEEEEEecCC
Confidence            99999988877777755543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.37  E-value=5.1e-11  Score=64.98  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             eecCCeEEEEEEEeecC-CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      ...++.+.|.|.+.+ . |.+.+.|++++..+....++.....+....|.|.++...|.|.|.|.+.|..+.....+.+.
T Consensus        14 ~c~~~~~~l~C~~~~-~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSS-CCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEcCceEEEEEEEec-cCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence            346788899999887 5 47899999999999887777776666677899999999999999999999877766655553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.37  E-value=3.2e-12  Score=70.13  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEc-C-cEEEEEEcccCCCCCEeeEE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETR-G-RRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~-~-~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....  ....... + ....+.|.++...|.|.|.|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEG-KPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEEC-SSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCC-CCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            3567777777788999999999999998 8999999999998876532  1112111 1 11123677888999999999


Q ss_pred             EEEcCCCcc
Q psy17205         82 VAENSMGKT   90 (106)
Q Consensus        82 ~~~~~~~~~   90 (106)
                      .+.|..|..
T Consensus        87 ~~~n~~g~~   95 (217)
T 2vr9_A           87 VAKNRVGQA   95 (217)
T ss_dssp             EEEETTEEE
T ss_pred             EEecCCCcc
Confidence            999987654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.37  E-value=1.4e-11  Score=67.83  Aligned_cols=74  Identities=18%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....         ...|.|.++...|.|.|.|.+.+.
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATG-HPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETT-TTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecC-CCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence            456777778888999999999999998 8999999999998876542         236999999999999999999998


Q ss_pred             CCcc
Q psy17205         87 MGKT   90 (106)
Q Consensus        87 ~~~~   90 (106)
                      .+..
T Consensus        88 ~~~~   91 (218)
T 3k0w_A           88 FTFE   91 (218)
T ss_dssp             TCCE
T ss_pred             CCCc
Confidence            7643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=71.19  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+... ..+.+..|+.+.|.|.+.+ . |.+.+.|++++..+....++....  ....|.|.++...|.|.|.|.+.|
T Consensus         7 ~P~~~~~-~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            7 GPHFVEY-LSWEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             CCEEEEE-EEEEEETTTEEEEEEEEES-CCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             CCcEeee-eeEEECCCCeEEEEEEEcC-CCCCCEEEEEECCeEcCCCCcEEEEC--CeEEEEEccCCcccCeEEEEEEEC
Confidence            3555533 3578889999999999988 6 779999999998887655544332  245799999999999999999999


Q ss_pred             CCCcceEEEEE
Q psy17205         86 SMGKTRQYLEL   96 (106)
Q Consensus        86 ~~~~~~~~~~l   96 (106)
                      ..+.....+.|
T Consensus        83 ~~g~~~~~~~l   93 (317)
T 2y25_A           83 DRGKDKSRLKL   93 (317)
T ss_dssp             SSCEEEEEECC
T ss_pred             CCCcEEEEEEE
Confidence            88766555443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.36  E-value=9.2e-12  Score=76.20  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCC-CEEEEEcC----cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTE-RRIMETRG----RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~-~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ...+..|+.+.|.|.+.+ .|.|. +.|++++..+.... ++......    ....|.|.++...|.|.|.|.+.|..|.
T Consensus       322 ~~~v~~G~~v~l~C~~~g-~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  400 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEA-FPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN  400 (524)
T ss_dssp             EEEECTTCCEEEEEEEEE-ESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eEEEcCCCcEEEEEEEee-cCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence            577889999999999999 99998 99999998776653 23222111    2457999999999999999999999988


Q ss_pred             ceEEEEEEE
Q psy17205         90 TRQYLELSG   98 (106)
Q Consensus        90 ~~~~~~l~~   98 (106)
                      ....+.|.+
T Consensus       401 ~~~~~~l~V  409 (524)
T 2ec8_A          401 AAIAFNVYV  409 (524)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            777666664

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.36  E-value=6.7e-11  Score=67.33  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEee-CCEEcCC-CCCEEEEE-cCcEEEEEEcccCCCCCEeeEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYK-ETLKLDT-TERRIMET-RGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~-~~~~l~~-~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      ++.+...+....+..|+.+.|.|.+.+ .+ .+.+.|++ ++..+.. ..++.... ......|.|.++...|.|.|.|.
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~-~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESS-CCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCC-CCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence            345666677778899999999999998 76 68999998 7766654 33443332 33466899999999999999999


Q ss_pred             EEcCCCcc-eEEEEEEEe
Q psy17205         83 AENSMGKT-RQYLELSGK   99 (106)
Q Consensus        83 ~~~~~~~~-~~~~~l~~~   99 (106)
                      +.+..+.. ...+.|.+.
T Consensus        81 ~~n~~g~~~~~~~~l~v~   98 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIF   98 (291)
T ss_dssp             EECTTSCEEEEEEEEEEE
T ss_pred             EEcCCCCeeEEEEEEEee
Confidence            99987543 344555543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.35  E-value=4.1e-12  Score=69.55  Aligned_cols=76  Identities=11%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC-CcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM-GKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~~~~~~~~   95 (106)
                      ..+..|+.+.|.|.+.++.|.+.+.|++++..+...        .....|.|.++...|.|.|.|.+.|.. +.....+.
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~  169 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ  169 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc--------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEE
Confidence            556789999999999662466889999998764321        112369999999999999999999943 33333455


Q ss_pred             EEEeC
Q psy17205         96 LSGKY  100 (106)
Q Consensus        96 l~~~~  100 (106)
                      |.+..
T Consensus       170 l~V~~  174 (204)
T 3sgj_C          170 ITITQ  174 (204)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            55443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.35  E-value=3.9e-11  Score=65.80  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCC---E-------------EcC--CCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKET---L-------------KLD--TTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~---~-------------~l~--~~~~~~~~~~~~~~~l~~~~   70 (106)
                      +...+ .+.+..|+.+.|.|...+ . +.+.+.|++..   .             ...  ...++..........|.|.+
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNS-QHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECG-GGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             EEeCC-cEEECCCCcEEEEEECCC-CCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            44455 788889999999999999 7 88999999831   0             000  11355444445567899999


Q ss_pred             cCCCCCEeeEEEEEcCCC
Q psy17205         71 VLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~~   88 (106)
                      +...|.|.|.|.+.+..+
T Consensus        82 v~~~D~G~Y~C~~~~~~~   99 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIK   99 (218)
T ss_dssp             CCGGGCEEEEEEEEEEET
T ss_pred             CCcccCEEEEEEEecCCC
Confidence            999999999999998765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.35  E-value=7.9e-12  Score=67.79  Aligned_cols=77  Identities=13%  Similarity=0.036  Sum_probs=56.7

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.+...+.. .+..|+.+.|.|.+.+  +.+.+.|++++..+..... ..........|.|.++...|.|.|.|.+.|..
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL--EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT--TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC--CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            455555554 6779999999999877  6688999999876643210 00011235579999999999999999999987


Q ss_pred             C
Q psy17205         88 G   88 (106)
Q Consensus        88 ~   88 (106)
                      +
T Consensus        82 g   82 (196)
T 3p2t_A           82 G   82 (196)
T ss_dssp             E
T ss_pred             c
Confidence            6

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.35  E-value=5.7e-11  Score=59.03  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|.|.+++.+
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQ-DISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE   83 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEeeCCEEEecCCCcEEEEEeecc-CCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence            4445566788899999999999988 778899999853     1111         123555544455678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (109)
T 2q20_A           84 DIATYYCQQYDN   95 (109)
T ss_dssp             GCEEEEEEECSS
T ss_pred             hCEEEEEEEeeC
Confidence            999999999874

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.34  E-value=2.9e-11  Score=64.85  Aligned_cols=79  Identities=18%  Similarity=0.188  Sum_probs=58.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ++.+...+....+..|+.+.|.|...+ .|.+.+.|++++..+..  ..++.....   ..|.|.++...|.|.|.|.+.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~   77 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSS-SPAPAVSWLYHNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGR   77 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEEC-SSCCEEEEEC-----CBCCCTTEEECTT---SCEEETTCCGGGCEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcC-CCCCEEEEEECCccceeccCCeEEEecC---CCEEEeeCCHhHCcEEEEEEE
Confidence            355666667788899999999999998 89999999999876653  233333222   269999999999999999999


Q ss_pred             cCCCc
Q psy17205         85 NSMGK   89 (106)
Q Consensus        85 ~~~~~   89 (106)
                      +..+.
T Consensus        78 ~~~~~   82 (189)
T 2v5t_A           78 VEARG   82 (189)
T ss_dssp             ETTTT
T ss_pred             EcCCC
Confidence            87644

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.34  E-value=2.6e-11  Score=65.05  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      ..+..|+.+.|.|.+.+ .|.|.+.|++++..+       ...   ...|.|.++...|.|.|.|.+.|..+.....+.|
T Consensus       107 ~~v~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~-------~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l  175 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPP-GSSPSVQCRSPRGKN-------IQG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI  175 (184)
T ss_dssp             SEEETTCCEEEEEECCT-TCCCEEEEECTTSCE-------EEE---SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeecCCCEEEEEEcCC-CCCCEEEEEeCCCcc-------ccC---ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEE
Confidence            45678999999999999 899999999886432       111   2379999999999999999999988777777777


Q ss_pred             EEeCC
Q psy17205         97 SGKYP  101 (106)
Q Consensus        97 ~~~~~  101 (106)
                      .+...
T Consensus       176 ~V~~~  180 (184)
T 2ny1_B          176 VVLAF  180 (184)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            65544

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.34  E-value=6.2e-11  Score=64.83  Aligned_cols=79  Identities=18%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC---E--Ec---------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET---L--KL---------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~---~--~l---------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++..   .  .+         ....++..........|.|.++...
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQ-DISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCC-CcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            3445566788899999999999999 888999999832   0  00         1134555555556778999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus        82 D~G~Y~C~~~~~~~   95 (213)
T 3r06_A           82 DIGSYYCQQYYNYP   95 (213)
T ss_dssp             GCSEEEEEECSSSS
T ss_pred             cCEEEEEecccCCc
Confidence            99999999988643

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.34  E-value=7e-11  Score=64.63  Aligned_cols=79  Identities=24%  Similarity=0.241  Sum_probs=60.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEc----------C--CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKL----------D--TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l----------~--~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+.+.|.|.+.+ .+.+.+.|++++  ..+          .  ...++..........|.|.++...|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQ-SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCC-CCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhh
Confidence            344466788899999999999998 888999999743  111          1  1245555555556789999999999


Q ss_pred             CEeeEEEEEcCCCc
Q psy17205         76 FGNYSCVAENSMGK   89 (106)
Q Consensus        76 ~g~y~C~~~~~~~~   89 (106)
                      .|.|.|.+.+..+.
T Consensus        83 ~G~Y~C~~~~~~~~   96 (213)
T 3d9a_L           83 FGMYFCQQSNSWPY   96 (213)
T ss_dssp             CEEEEEEECSSSSC
T ss_pred             CEEEEEeeecCCcc
Confidence            99999999987654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.34  E-value=1.3e-10  Score=64.00  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ..+.+..|+++.|.|.+ + .|.|  .+.|++.+..+   .+...  ......|.|.++...|.|.|.|.+.+..+....
T Consensus        15 ~~v~v~~G~sv~L~C~a-~-~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~   87 (210)
T 1gsm_A           15 PVVAVALGASRQLTCRL-A-CADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   87 (210)
T ss_dssp             SEEEEETTCCEEEEEEE-C-CSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CceEEeCCCCEEEEEEC-C-CCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEE
Confidence            34688899999999999 7 7888  99999855333   12221  133567999999999999999999998877766


Q ss_pred             EEEEEEeCC
Q psy17205         93 YLELSGKYP  101 (106)
Q Consensus        93 ~~~l~~~~~  101 (106)
                      .+.|.+..+
T Consensus        88 ~~~ltV~~~   96 (210)
T 1gsm_A           88 TVQLLVYAF   96 (210)
T ss_dssp             EEEEEEEBC
T ss_pred             EEEEEEEec
Confidence            677765544

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.34  E-value=1.5e-11  Score=68.65  Aligned_cols=74  Identities=20%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE----------------------EEEcCcEEEEEEccc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRI----------------------METRGRRHTLVIRKV   71 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~----------------------~~~~~~~~~l~~~~~   71 (106)
                      ...+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.......                      .... ....|.|.++
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g-~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v  220 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTD-CANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAA  220 (250)
T ss_dssp             CSEEECCTTCCEEECCCEES-CTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSC
T ss_pred             CceEEecCCCcEEEEEEecC-CCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecC
Confidence            34466677999999999999 8999999999987665422110                      0000 1147999999


Q ss_pred             CCCCCEeeEEEEEcCCCc
Q psy17205         72 LFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~~   89 (106)
                      ...|.|.|.|.+.|..|.
T Consensus       221 ~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          221 KITDAGRVWCELATGQGE  238 (250)
T ss_dssp             CGGGCEEEEEEEESSSSG
T ss_pred             CcccCEEEEEEecCCccc
Confidence            999999999999996554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.33  E-value=1.2e-11  Score=73.02  Aligned_cols=86  Identities=17%  Similarity=0.203  Sum_probs=66.8

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+|.+...+..+.+..|+.+.|.|.+.+..|.+.+.|++++..+....+. .........|.|.++...|.|.|.|.+.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (395)
T 1bih_A            4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN-AALRKDEGSLVFLRPQASDEGHYQCFAE   82 (395)
T ss_dssp             -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTT-EEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccce-EEEecCCceEEEecCCCCCCcEEEEEEE
Confidence            456788888888889999999999999873578899999999887665421 1111223469999999999999999999


Q ss_pred             cCCCcce
Q psy17205         85 NSMGKTR   91 (106)
Q Consensus        85 ~~~~~~~   91 (106)
                      |..|...
T Consensus        83 n~~g~~~   89 (395)
T 1bih_A           83 TPAGVAS   89 (395)
T ss_dssp             ETTEEEE
T ss_pred             eCCCeEE
Confidence            9876543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.33  E-value=2.1e-11  Score=66.71  Aligned_cols=78  Identities=15%  Similarity=0.136  Sum_probs=60.5

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+....+..|+.+.|.|.+.+ .+.+. +.|++++..+....          ..|.|.++...|.|.|.|.+.|.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~-~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAY-SPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCS-SSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTS
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCC-CCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCC
Confidence            45555565567889999999999998 77775 99999998776542          37999999999999999999885


Q ss_pred             CCcceEEEEE
Q psy17205         87 MGKTRQYLEL   96 (106)
Q Consensus        87 ~~~~~~~~~l   96 (106)
                      .......+.+
T Consensus        77 ~~s~~~~l~V   86 (204)
T 3sgj_C           77 TLSDPVQLEV   86 (204)
T ss_dssp             BCCCCEEEEE
T ss_pred             cccccEEEEE
Confidence            4444333333

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.33  E-value=2.6e-11  Score=67.03  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=56.3

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-EcCCCCC-EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-KLDTTER-RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ......|..+.+.|.+.++.|.|.+.|++++. .+..... ......+....+.+..+...|.|.|.|.+.|..|...+.
T Consensus       127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~  206 (226)
T 4f80_A          127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT  206 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE
T ss_pred             eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE
Confidence            45667899999999998734899999998653 3333211 111222323344555677889999999999999988888


Q ss_pred             EEEEEeCC
Q psy17205         94 LELSGKYP  101 (106)
Q Consensus        94 ~~l~~~~~  101 (106)
                      ..|.+..|
T Consensus       207 ~~v~v~ep  214 (226)
T 4f80_A          207 ASISIADP  214 (226)
T ss_dssp             EEECCCTT
T ss_pred             EEEEECCC
Confidence            77775544

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.33  E-value=4.1e-11  Score=74.89  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+...           ..|.|.++...|.|.|.|.+.|..|..
T Consensus       563 ~~~~~~~~v~~g~~~~l~C~~~g-~p~p~v~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~N~~G~~  630 (642)
T 1e07_A          563 IISPPDSSYLSGANLNLSCHSAS-NPSPQYSWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGR  630 (642)
T ss_pred             eecCCceeEEcCCcEEEEEEecc-CCCCeEEEEECCEECccC-----------ceEEECcccccCCeEEEEEEEecccCc
Confidence            33445567788999999999999 999999999999876542           268899999999999999999999988


Q ss_pred             eEEEEEE
Q psy17205         91 RQYLELS   97 (106)
Q Consensus        91 ~~~~~l~   97 (106)
                      .....|.
T Consensus       631 ~~s~~l~  637 (642)
T 1e07_A          631 NNSIVKS  637 (642)
T ss_pred             ceeEEEE
Confidence            7766555

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.33  E-value=8.5e-11  Score=65.70  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee--CCEEc------------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK--ETLKL------------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~--~~~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++  ++..+            ....++..........|.|.++...
T Consensus       137 ~~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  215 (247)
T 2ghw_B          137 TLTQSPATLSLSPGERATLSCRASQ-SVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPE  215 (247)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGG
T ss_pred             EEEccCCEEEecCCCcEEEEEEeCC-CccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHH
Confidence            3444455677889999999999999 8888999998  44322            1123454443445667999999999


Q ss_pred             CCEeeEEEEEcCC
Q psy17205         75 DFGNYSCVAENSM   87 (106)
Q Consensus        75 ~~g~y~C~~~~~~   87 (106)
                      |.|.|.|.+.+..
T Consensus       216 D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          216 DFAVYYCQQRSNW  228 (247)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             HCEEEEEEEccCC
Confidence            9999999999853

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.32  E-value=9.1e-11  Score=59.24  Aligned_cols=77  Identities=16%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|+|.+++.+
T Consensus         5 ~v~q~p~~v~v~~G~~vtL~C~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            5 QMTQSPSSLSASLGGKVTITCKANQ-DIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE   83 (119)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG
T ss_pred             eeEecCCeEEEeCCCCEEEEEEeCC-CCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH
Confidence            3445566788899999999999988 778899999853     1111         124565544455678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        84 DsG~Y~C~~~~~   95 (119)
T 2e27_L           84 DAATYYCLQYDN   95 (119)
T ss_dssp             GCEEEEEEECGG
T ss_pred             HCEEEEEEEccC
Confidence            999999999874

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.32  E-value=5.4e-11  Score=72.83  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=69.9

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEc--CCCCCEEEE---EcCcEEEEEEcccCCCCCEee
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKL--DTTERRIME---TRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l--~~~~~~~~~---~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.+. +.|++++..+  ....+....   .......|.|.++...|.|.|
T Consensus       210 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y  288 (524)
T 2ec8_A          210 AVPVVSVSKASYLLREGEEFTVTCTIKD-VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF  288 (524)
T ss_dssp             SCCEEECSCSEEEEETTSCEEEEEEEEE-SSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEE
T ss_pred             CCCcEEecCCcceEEcCCcEEEEEEEec-CCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEE
Confidence            4567766677778889999999999999 88886 9999998763  222111111   012245799999999999999


Q ss_pred             EEEEEcCCCcceEEEEEEEeC
Q psy17205         80 SCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        80 ~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      .|.+.|..|.....+.|.+..
T Consensus       289 ~C~a~n~~g~~~~~~~l~V~~  309 (524)
T 2ec8_A          289 MCYANNTFGSANVTTTLEVVD  309 (524)
T ss_dssp             EEEEECSSCEEEEEEEEEEES
T ss_pred             EEEEEecCCceEEEEEEEEec
Confidence            999999988877766666543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.32  E-value=1.1e-10  Score=65.90  Aligned_cols=78  Identities=19%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCC-----eEEEee--CCEEcC------------CCCCEEEEEcCcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRP-----QVIWYK--ETLKLD------------TTERRIMETRGRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-----~~~w~~--~~~~l~------------~~~~~~~~~~~~~~~l~~~   69 (106)
                      .+...+..+.+..|+.+.|.|.+.+ .+.+     .+.|++  ++..+.            ...++..........|.|.
T Consensus       123 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  201 (256)
T 1nqb_A          123 ELTQTPLSLPVSLGDQASISCRSSQ-SIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS  201 (256)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEecCcEEEEecCCcEEEEeEecC-cccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEEC
Confidence            3444456677889999999999998 7765     999998  443221            1235544444456689999


Q ss_pred             ccCCCCCEeeEEEEEcCC
Q psy17205         70 KVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~   87 (106)
                      ++...|.|.|.|.+.+..
T Consensus       202 ~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          202 RVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             SCCGGGCEEEEEEECSSS
T ss_pred             CCChHHCEEEEEEEccCC
Confidence            999999999999998753

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.32  E-value=1.7e-11  Score=72.56  Aligned_cols=79  Identities=27%  Similarity=0.364  Sum_probs=59.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-EEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-LKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +..+.+..|+.+.|.|.+.+ .|.|.+.|++++ ..+....+.    ......|.|.++...|.|.|.|.+.|..|....
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g-~P~p~i~W~k~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  286 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALG-NPVPTILWRRADGKPIARKARR----HKSNGILEIPNFQQEDAGSYECVAENSRGKNVA  286 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEE-ESCCEEEEEETTCCCCCTTCEE----CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCceEecCCCcEEEEEEEee-cCCCcEEEEeCCCcccccccee----cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence            34566788999999999999 999999999854 344332111    122337999999999999999999999887766


Q ss_pred             EEEEE
Q psy17205         93 YLELS   97 (106)
Q Consensus        93 ~~~l~   97 (106)
                      ...|.
T Consensus       287 ~~~l~  291 (384)
T 3kld_A          287 KGQLT  291 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55444

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.32  E-value=1.1e-10  Score=66.98  Aligned_cols=78  Identities=18%  Similarity=0.308  Sum_probs=65.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      ...+.+.+|+.+.+.|....+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|.|.+.|..|...
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~   85 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS   85 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE
Confidence            335677889999998888643788999999999999877788777766677999999999999999999999877544

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.32  E-value=8.8e-11  Score=58.15  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=57.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|.|.+++.+|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTST-DIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEeCCCeEEecCCCCEEEEEEECC-CCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHH
Confidence            344566788889999999999988 778899999853     1111         1235655544556789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (107)
T 1i8k_A           83 VGDYYCLQSFN   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.32  E-value=9.8e-12  Score=76.60  Aligned_cols=81  Identities=10%  Similarity=0.055  Sum_probs=63.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+..    .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus       335 ~~~v~~G~~v~L~C~~~g-~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~  409 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKA-YPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT  409 (527)
T ss_dssp             EECCCTTCCCCEEEEEEE-ESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEE
T ss_pred             cEEEcCCCeEEEEEEEEe-cCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEE
Confidence            456778999999999999 9999999999998876543321    12336889999999999999999999988777776


Q ss_pred             EEEeCC
Q psy17205         96 LSGKYP  101 (106)
Q Consensus        96 l~~~~~  101 (106)
                      |.+..+
T Consensus       410 L~V~~~  415 (527)
T 3qs9_E          410 LNIRRK  415 (527)
T ss_dssp             EC--CC
T ss_pred             EEEecC
Confidence            665433

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.31  E-value=1.6e-10  Score=57.62  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=56.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC--E----EcCCCCCEEEEE--cCcEEEEEEcccCCCCCEee
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET--L----KLDTTERRIMET--RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~--~----~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +...+..+.+..|+++.|.|...+ .  +.+.+.|++..  .    .+....++....  ......|.|.+++.+|.|.|
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y   81 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKD-HSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTY   81 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEES-CSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEECCCcEEEccCCCEEEEeEECC-CCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEE
Confidence            445566788899999999999987 5  46789999852  1    222334554432  23467899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (111)
T 2ywz_A           82 KCQADY   87 (111)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999988

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.31  E-value=9.6e-12  Score=74.78  Aligned_cols=84  Identities=10%  Similarity=0.050  Sum_probs=58.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+.......    .....+........|.|.|.|.+.|..|.....+
T Consensus       334 ~~~~v~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~  408 (423)
T 3qs7_E          334 EDYEIDQYEEFCFSVRFKA-YPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMF  408 (423)
T ss_dssp             CEECCCTTCCCCEEEEEEE-ESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEE
T ss_pred             ccEEecCCCeEEEEEEEEE-cCCCeEEEEECCEECCCccccc----cCCcEEEEEecccccCEEEEEEEEcCCceEEEEE
Confidence            3466778999999999999 9999999999998876532100    0011122244566899999999999999998888


Q ss_pred             EEEEeCCCC
Q psy17205         95 ELSGKYPNA  103 (106)
Q Consensus        95 ~l~~~~~~~  103 (106)
                      .|.+...++
T Consensus       409 ~L~v~~~p~  417 (423)
T 3qs7_E          409 TLNIRSGTK  417 (423)
T ss_dssp             EEC------
T ss_pred             EEEEecCCc
Confidence            887555544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.31  E-value=6.7e-11  Score=73.18  Aligned_cols=86  Identities=12%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             CCeEEeecCCeEEEEEEEe----ecCCCCeEEEeeCCEEcCCCCC------E-EEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFH----FAFCRPQVIWYKETLKLDTTER------R-IMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~----~~~p~p~~~w~~~~~~l~~~~~------~-~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      +....+..|+.+.|.|.+.    + .|.+.+.|++++..+.....      + .....+....|.|.++...|.|.|.|.
T Consensus       449 ~~~~~v~~G~~v~L~C~~~~~~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  527 (585)
T 2ocw_A          449 PGNVTAVLGETLKVPCHFPCKFSS-YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCG  527 (585)
T ss_pred             CCceeEecCCcEEEEEEecCCCCC-CccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEE
Confidence            4556788999999999986    5 67889999999976643211      1 111123346899999999999999999


Q ss_pred             EEcCCCcceEE-EEEEEeC
Q psy17205         83 AENSMGKTRQY-LELSGKY  100 (106)
Q Consensus        83 ~~~~~~~~~~~-~~l~~~~  100 (106)
                      +.|..|..... +.|.+..
T Consensus       528 a~N~~G~~~~~~~~l~V~~  546 (585)
T 2ocw_A          528 VKQGHFYGETAAVYVAVEE  546 (585)
T ss_pred             eEeCCCccEEEEEEEEEEe
Confidence            99998765543 5555433

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.30  E-value=1.9e-13  Score=86.52  Aligned_cols=91  Identities=18%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+........+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+..  ....|.|.++...|.|.|.|.+.|.
T Consensus       666 ~P~~~~~~~~~~v~~g~~~~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~  742 (772)
T 3v2a_R          666 APTITGNLENQTTSIGESIEVSCTASG-NPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSV  742 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEeecCCCceEEeCCCCEEEEEEeCc-cCCCeEEEEECCeECcCCCCeEEcC--CCcEEEECcCCHHHCEEEEEEEEeC
Confidence            455555555567788999999999999 9999999999998887654443322  2347999999999999999999999


Q ss_pred             CCcceEEEEEEEeC
Q psy17205         87 MGKTRQYLELSGKY  100 (106)
Q Consensus        87 ~~~~~~~~~l~~~~  100 (106)
                      .|.....+.|.+..
T Consensus       743 ~G~~~~~~~l~V~~  756 (772)
T 3v2a_R          743 LGCAKVEAFFIIEG  756 (772)
T ss_dssp             --------------
T ss_pred             CcceeEEEEEEEEC
Confidence            99888776666443

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.30  E-value=5.6e-11  Score=60.11  Aligned_cols=76  Identities=22%  Similarity=0.287  Sum_probs=57.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+++.|.|...+ .+.+.+.|++..  .   .+.         ...++..........|.|.+++..|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   82 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASE-NIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCC-CCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHH
Confidence            334566788889999999999988 778899999853  1   110         1245655544456789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (120)
T 1mqk_L           83 FGSYYCQHHYG   93 (120)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEEeC
Confidence            99999999875

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=74.29  Aligned_cols=80  Identities=14%  Similarity=0.100  Sum_probs=62.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      ..+..|+.+.|.|.+.+ .|.| .+.|++++..+......     .....+.+..+...|.|.|.|.+.|..|.....+.
T Consensus       222 ~~~~~g~~v~l~C~~~g-~P~p~~v~W~k~~~~~~~~~~~-----~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~  295 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADA-NPPPFKSVWSRLDGQWPDGLLA-----SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKV  295 (308)
T ss_dssp             CEETTCCSCEEECCEEE-ESCEEEEECCBSSSCCCSSCBC-----STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEE
T ss_pred             eeeeccccEEEEEEEec-CCCCcEEEEEECCeECCCcEEE-----cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEE
Confidence            45567889999999999 8888 69999998766543211     12335667889999999999999999998888877


Q ss_pred             EEEeCCC
Q psy17205         96 LSGKYPN  102 (106)
Q Consensus        96 l~~~~~~  102 (106)
                      |.+..+|
T Consensus       296 l~V~~~P  302 (308)
T 4fom_A          296 IYISDPP  302 (308)
T ss_dssp             CCEECCC
T ss_pred             EEEEcCC
Confidence            7766554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=4.1e-11  Score=70.71  Aligned_cols=80  Identities=18%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC----CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT----ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+.+..|+.+.+.|.+.+  |.|.+.|++++..+...    .++.. ..+   .|.|.++...|.|.|.|.+.|..|..
T Consensus       254 ~~v~v~~G~~~~l~C~~~g--p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~---~L~I~~v~~~D~G~Y~C~a~N~~g~~  327 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDTKQ--QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG---DLFFKKVQVEDGGVYTCYAMGETFNE  327 (361)
T ss_dssp             CCCEEETTCCEEECCCCSS--TTCEEEEECTTSCBCCSCCSSSSEEE-ETT---EEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             cCceecCCCeEEEEeEeeC--CCCeEEEEeCCCeeEeecccCCceEe-ecC---eEEEeecCcccCEEEEEEEecCCCcc
Confidence            3467889999999999976  88899999976544321    24544 333   69999999999999999999998888


Q ss_pred             eEEEEEEEeC
Q psy17205         91 RQYLELSGKY  100 (106)
Q Consensus        91 ~~~~~l~~~~  100 (106)
                      ...+.+.+..
T Consensus       328 ~~~~~l~V~~  337 (361)
T 2xot_A          328 TLSVELKVYN  337 (361)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEEEe
Confidence            8777776544

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.30  E-value=2.2e-10  Score=62.57  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=58.0

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEc------------CCCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKL------------DTTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+..|+.+.|.|.+.+ .+.+.+.|+++.  ..+            ....++..........|.|.++...|.|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASE-SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCC-ccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence            66788899999999999998 888899999842  111            112455555445566899999999999999


Q ss_pred             EEEEEcCCCc
Q psy17205         80 SCVAENSMGK   89 (106)
Q Consensus        80 ~C~~~~~~~~   89 (106)
                      .|.+.+..+.
T Consensus        86 ~C~~~~~~~~   95 (210)
T 1lk3_L           86 FCQQSWNGPL   95 (210)
T ss_dssp             EEEECSSSSC
T ss_pred             EEEEEcCCCc
Confidence            9999987653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.30  E-value=3.1e-10  Score=65.93  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=64.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC---CC-eEEEeeCCEEc-CCCCCEEEE--EcC--cEEEEEEcccCCCCCE-eeEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC---RP-QVIWYKETLKL-DTTERRIME--TRG--RRHTLVIRKVLFTDFG-NYSCV   82 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p---~p-~~~w~~~~~~l-~~~~~~~~~--~~~--~~~~l~~~~~~~~~~g-~y~C~   82 (106)
                      .+....+..|+.+.|.|.+.+ .|   .+ .+.|++++..+ .........  ...  ....|.|.++...|.| .|.|.
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g-~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~  312 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVS-TSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCR  312 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEE-TTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEE
T ss_pred             cCCeeEEecCCCEEEEEEEEE-CCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEE
Confidence            455577889999999999999 87   77 88999998764 333333222  111  3457999999999999 99999


Q ss_pred             EEcCCCcceEEEEEE
Q psy17205         83 AENSMGKTRQYLELS   97 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~   97 (106)
                      +.|..|.....+.|.
T Consensus       313 a~N~~G~~~~~~~l~  327 (329)
T 3oq3_B          313 GHNYYFDKTLTTTVV  327 (329)
T ss_dssp             EECSSCEEEEEEEEE
T ss_pred             EEecCCceEEEEEEE
Confidence            999998887766654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.30  E-value=7.1e-12  Score=72.69  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEee----CCEEcCCCCC--EEEEE-------cCcEEEEEEcccCCCCCEeeEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYK----ETLKLDTTER--RIMET-------RGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~----~~~~l~~~~~--~~~~~-------~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      ....+..|+.+.|.|.+.+ .|.|.+.|++    ++..+.....  .....       ......|.|.++...|.|.|.|
T Consensus       230 ~~~~~~~G~~v~l~C~~~g-~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  308 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYS-DAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC  308 (334)
T ss_dssp             CCEEEESSCCEEECCCCBC-SSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEE
T ss_pred             CceEEeCCCCEEEEEEEec-CCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEE
Confidence            4567788999999999999 9999999999    5655543221  11100       0112369999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEeCCCCC
Q psy17205         82 VAENSMGKTRQYLELSGKYPNAQ  104 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~  104 (106)
                      .+.|..|.....+.|.+.+.+++
T Consensus       309 ~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          309 LAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEeCCCCeEEEEEEEEEEECCCC
Confidence            99999999888888887665543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.30  E-value=2.4e-11  Score=64.88  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc-ceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-TRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~-~~~~~~   95 (106)
                      ..+..|+.+.|.|.+.++.|.+.+.|++++..+....        ....|.|.++...|.|.|.|.+.|..+. ....+.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~  166 (176)
T 1f2q_A           95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN  166 (176)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEE
Confidence            4566999999999995326778999999998775431        1237999999999999999999996433 233456


Q ss_pred             EEEeCCC
Q psy17205         96 LSGKYPN  102 (106)
Q Consensus        96 l~~~~~~  102 (106)
                      |.+..++
T Consensus       167 l~V~~~p  173 (176)
T 1f2q_A          167 ITVIKAP  173 (176)
T ss_dssp             EEEECSC
T ss_pred             EEEecCC
Confidence            6655443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.29  E-value=4.2e-11  Score=69.60  Aligned_cols=78  Identities=17%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             eecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCC-CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC--CCcceEE-
Q psy17205         19 ETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDT-TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS--MGKTRQY-   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~--~~~~~~~-   93 (106)
                      +..|+.+.|.|.+.+ .| .+.+.|++++..+.. ..++... .   ..|.|.++...|.|.|.|.+.|.  .|..... 
T Consensus       140 ~~~G~~v~L~C~~~g-~p~~~~i~W~k~~~~l~~~~~~~~~~-~---~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~  214 (329)
T 3oq3_B          140 THDKYGIDLYCGILY-AKHYNNITWYKNNQELIIDGTKYSQS-G---QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV  214 (329)
T ss_dssp             SSTTTCEEEECCCCS-CCCCCEEEEEETTEECCCSSSSEEEE-T---TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEE
T ss_pred             EeCCCcEEEEeccCC-CCCCceEEEEECCccCCCCCceEecC-C---CEEEEeecChhhCEEEEEEEEecccCCCceeEE
Confidence            456999999999999 88 899999999988863 3344333 2   37999999999999999999986  5544333 


Q ss_pred             ---EEEEEeCC
Q psy17205         94 ---LELSGKYP  101 (106)
Q Consensus        94 ---~~l~~~~~  101 (106)
                         +.|.+..+
T Consensus       215 s~~~~l~V~~~  225 (329)
T 3oq3_B          215 SRCKILTVIPS  225 (329)
T ss_dssp             EEEEEEEEECC
T ss_pred             EeeEEEEEECC
Confidence               44554433

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.29  E-value=1.4e-11  Score=67.00  Aligned_cols=78  Identities=14%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      ....|+.+.|.|.+.+ .|.|.+.|++++..+..  .......+....+.+..+...|.|.|.|.+.|..|.....+.+.
T Consensus       114 ~~~~g~~v~l~C~~~g-~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~  190 (202)
T 3bp6_B          114 EVPGTGEVQLTCQARG-YPLAEVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID  190 (202)
T ss_dssp             ECTTTCCEEEEEEEEE-BSCCEEEETTCCSCCEE--EEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCCeEEEEEEccc-cCCceEEEEeCCCCccC--ceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEE
Confidence            4457999999999999 99999999987653321  11111123334567778888999999999999999888777666


Q ss_pred             E
Q psy17205         98 G   98 (106)
Q Consensus        98 ~   98 (106)
                      +
T Consensus       191 v  191 (202)
T 3bp6_B          191 P  191 (202)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.29  E-value=2.9e-10  Score=62.98  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=59.8

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-------------EE-cCCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-------------LK-LDTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-------------~~-l~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.|++..             .. .....++..........|.|.++...
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQ-DVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCC-CCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            3445566788899999999999999 788999999832             00 11124555555456778999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus       105 D~G~Y~C~~~~~~~  118 (237)
T 3sob_L          105 DFATYYCQQSYTTP  118 (237)
T ss_dssp             GCEEEEEEECSSSS
T ss_pred             hCeEEEEeeccCCc
Confidence            99999999987654

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.28  E-value=9.9e-11  Score=65.87  Aligned_cols=79  Identities=18%  Similarity=0.224  Sum_probs=58.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeC--CEEcC------------CCCCEEEEEcCcEEEEEEcccC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKE--TLKLD------------TTERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~--~~~l~------------~~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      +.+...+..+.+..|+++.|.|.+.+ .+.+ .+.|++.  +..+.            ...++..........|.|.++.
T Consensus       142 ~~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  220 (257)
T 3gkz_A          142 IVLTQSPAIMSASPGEKVTLTCSASS-SVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSME  220 (257)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESS-CCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEEcCCceEEEeCCCcEEEEEEEcc-CccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCC
Confidence            44555566678889999999999998 7777 8999983  21111            1134544444556689999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus       221 ~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          221 AEDAASYFCHQWSSF  235 (257)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             hHHCEEEEEEEccCC
Confidence            999999999998753

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.28  E-value=4e-11  Score=67.40  Aligned_cols=80  Identities=20%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC----eEEEeeCC--EEcC------------CCCCEEEEEcCcEEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP----QVIWYKET--LKLD------------TTERRIMETRGRRHTLVIR   69 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p----~~~w~~~~--~~l~------------~~~~~~~~~~~~~~~l~~~   69 (106)
                      +.+...+..+.+..|+++.|.|.+.+ .+.+    .+.|+++.  ..+.            ...++..........|.|.
T Consensus       134 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  212 (253)
T 3uzq_A          134 LVMTQTPASLAVSLGQRATISCRASE-NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTIN  212 (253)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESS-CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             ceEECcCCeEEEeCCCCEEEEEEecC-ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEEC
Confidence            44555566678889999999999998 7776    89999842  1111            1234544444556689999


Q ss_pred             ccCCCCCEeeEEEEEcCCC
Q psy17205         70 KVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~   88 (106)
                      ++...|.|.|.|.+.|..+
T Consensus       213 ~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          213 PVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSS
T ss_pred             CCCHHHCEEEEEEEccCCC
Confidence            9999999999999998543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.28  E-value=4.4e-10  Score=71.96  Aligned_cols=93  Identities=17%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-----cCcEEEEEEcccCCCCCEeeEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-----RGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      ++.+........+..|+.+.|.|.+.+ .|.|.+.|++++..+....++....     ......|.|..+...|.|.|.|
T Consensus       429 ~p~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  507 (816)
T 3dmk_A          429 PPVIRQAFQEETMEPGPSVFLKCVAGG-NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC  507 (816)
T ss_dssp             CCEEEEECCCEEECSSSCEEEEEEEEC-SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEE
T ss_pred             CCceEecCcceEEcCCCCEEEEEEEec-CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEE
Confidence            445554455567788999999999999 9999999999999887765554322     1223469999999999999999


Q ss_pred             EEEcCCCcceEEEEEEEeC
Q psy17205         82 VAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~  100 (106)
                      .+.|..|.......|.+..
T Consensus       508 ~a~n~~g~~~~~~~l~V~~  526 (816)
T 3dmk_A          508 IAKSKVGVAEHSAKLNVYG  526 (816)
T ss_dssp             EEEETTEEEEEEEEEEECS
T ss_pred             EEEECCCeEEEEEEEEEec
Confidence            9999988877766666443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.28  E-value=4.3e-11  Score=63.85  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+...+..+.+..|+.+.|.|.+.+ .+.+. +.|++++..+...          ...|.|.++...|.|.|.|.+.|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~-~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~~~n   75 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAY-SPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNL   75 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCC-BTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCC-CCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEEeeC
Confidence            355666666667889999999999988 77665 7899998766542          23799999999999999999998


Q ss_pred             CCCcceEEEEE
Q psy17205         86 SMGKTRQYLEL   96 (106)
Q Consensus        86 ~~~~~~~~~~l   96 (106)
                      ..+.....+.+
T Consensus        76 ~~~s~~~~l~V   86 (175)
T 1fnl_A           76 STLSDPVQLEV   86 (175)
T ss_dssp             SCCCCCEEEEE
T ss_pred             CcccccEEEEE
Confidence            65544434433

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.28  E-value=5.5e-11  Score=58.98  Aligned_cols=75  Identities=23%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      ...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|.|.++..+|.
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (108)
T 1qfw_M            5 TQSPKSMSMSVGERVTLSCKASE-TVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDF   83 (108)
T ss_dssp             EEECSCEECCTTCCEEEEEEESS-CCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCC
T ss_pred             EEeCCeEEEcCCCCEEEEeeeCC-CCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence            34455678889999999999988 777889999753     1111         12344443334466899999999999


Q ss_pred             EeeEEEEEcC
Q psy17205         77 GNYSCVAENS   86 (106)
Q Consensus        77 g~y~C~~~~~   86 (106)
                      |.|.|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (108)
T 1qfw_M           84 ADYHCGQTYN   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             EEEEEEEccC
Confidence            9999999875

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.28  E-value=1.6e-10  Score=64.83  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=60.2

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC--EEc----------C--CCCCEEEEEcCcEEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET--LKL----------D--TTERRIMETRGRRHTLVI   68 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~--~~l----------~--~~~~~~~~~~~~~~~l~~   68 (106)
                      +.+...+..+.+..|+.+.|.|.+.+ .+     .+.+.|++++  ..+          .  ...++..........|.|
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  117 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQ-SLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI  117 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESS-CCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccC-cccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence            44555566788899999999999988 76     4899999742  211          1  124565555555678999


Q ss_pred             cccCCCCCEeeEEEEEcCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .++...|.|.|.|.+.|..+
T Consensus       118 ~~v~~~D~G~Y~C~a~n~~~  137 (254)
T 2c1o_A          118 SRVEAEDLGIYYCVQGSHFP  137 (254)
T ss_dssp             SSCCGGGCSEEEEEECSSSS
T ss_pred             CcCCcccCEEEEEEEEcCcc
Confidence            99999999999999998754

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.28  E-value=9.7e-11  Score=65.92  Aligned_cols=80  Identities=16%  Similarity=0.242  Sum_probs=60.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEcC------------CCCCEEEEEcCcEEEEEEcccC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKLD------------TTERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l~------------~~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      ++.+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++..  ..+.            ...++..........|.|.++.
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  216 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQ-DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLE  216 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCC
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEec-CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCC
Confidence            345555566678889999999999999 888899999842  1111            1235555555566789999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus       217 ~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          217 SEDFVDYYCLQYASS  231 (256)
T ss_dssp             GGGCSEEEEEECSSS
T ss_pred             hhHCEEEEEEEeeCC
Confidence            999999999999854

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.28  E-value=2.2e-11  Score=66.37  Aligned_cols=82  Identities=11%  Similarity=-0.007  Sum_probs=59.5

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ....+..+..+.+.|.+.+ .|.|.+.|++++..+.......... ......|.|..+...|.|.|.|.+.|..|.....
T Consensus       126 ~~~~~~~~~~~~~~c~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~  204 (218)
T 4frw_A          126 PALEEGQGLTLAASCTAEG-SPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQR  204 (218)
T ss_dssp             SCEETTCCSEEEEEEEEEE-BSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             eeeeeeeccccceeeeccC-CcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEE
Confidence            3455667889999999999 9999999999876554321111000 0113369999999999999999999998887765


Q ss_pred             EEEE
Q psy17205         94 LELS   97 (106)
Q Consensus        94 ~~l~   97 (106)
                      +.+.
T Consensus       205 ~t~~  208 (218)
T 4frw_A          205 ITHI  208 (218)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.28  E-value=5.5e-11  Score=59.96  Aligned_cols=91  Identities=16%  Similarity=0.293  Sum_probs=62.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCC----CeEEEeeCC-------EEc--------------CCCCCEEEEEc---
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCR----PQVIWYKET-------LKL--------------DTTERRIMETR---   60 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~-------~~l--------------~~~~~~~~~~~---   60 (106)
                      .+...+..+.+..|+++.|.|...+ .+.    +.+.|++.+       ..+              ....+..+...   
T Consensus         7 ~v~~~~~~v~~~~G~~v~L~C~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~   85 (126)
T 1eaj_A            7 SITTPEEMIEKAKGETAYLPCKFTL-SPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLK   85 (126)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEEC-CTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGG
T ss_pred             EEECCCceEEEEeCCCEEEEEEEec-CCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccccc
Confidence            3444455678889999999999987 554    359998764       111              01123333221   


Q ss_pred             CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeC
Q psy17205         61 GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        61 ~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      ....+|.|.++...|.|.|.|.+.+..+.....+.|.+..
T Consensus        86 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           86 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            1235799999999999999999999877666667766543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.28  E-value=5.5e-10  Score=61.71  Aligned_cols=88  Identities=17%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCC---eEEEeeCCEE-----------cCC------CCCEEEEEc---CcEEEEEEc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRP---QVIWYKETLK-----------LDT------TERRIMETR---GRRHTLVIR   69 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~-----------l~~------~~~~~~~~~---~~~~~l~~~   69 (106)
                      +...+.+..|+++.|.|...+ .+.+   .+.|++++..           +..      ..+......   .....|.|.
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~-~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   88 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFP-TMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIH   88 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEES-CCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEES
T ss_pred             CCCCEEEEcCCcEEEEEEEEC-CCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEe
Confidence            444577889999999999987 5544   6899886521           110      112222211   235689999


Q ss_pred             ccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         70 KVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      ++...|.|.|.|.+.|..+.....+.+...++
T Consensus        89 ~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~  120 (226)
T 4f80_A           89 NVTASDSGKYLCYFQDGDFYEKALVELKVAAL  120 (226)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             eCchHHCeeEEEEEECCCcEEEEEEEEeeccc
Confidence            99999999999999998877776666654444

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.27  E-value=9.3e-12  Score=72.20  Aligned_cols=84  Identities=24%  Similarity=0.303  Sum_probs=64.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ...+..|+.+.|.|.+.+ .|.+.+.|++++..+....+. ..........|.|.++...|.|.|.|.+.|..|.....+
T Consensus       132 ~~~v~~g~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  210 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAG-NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY  210 (334)
T ss_dssp             EEEEETTCCEEEECCCCC-SSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEE
T ss_pred             eEEecCCCcEEEEEEccC-CCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEE
Confidence            356778999999999998 899999999998877654321 111112234799999999999999999999988777666


Q ss_pred             EEEEeC
Q psy17205         95 ELSGKY  100 (106)
Q Consensus        95 ~l~~~~  100 (106)
                      .|.+..
T Consensus       211 ~l~V~~  216 (334)
T 1ry7_B          211 TLDVLE  216 (334)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            666443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.27  E-value=1.8e-10  Score=63.33  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             EEeecCCeEEEEEEE-eecCCCCeEEEeeC-CEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         17 IIETRGRRHTLIFFF-HFAFCRPQVIWYKE-TLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~-~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ..+..|+.+.|.|.+ .+ .|.+.+.|+++ +..+..........  .+....+.+.++...|.|.|.|.+.|..|....
T Consensus       120 ~~v~~G~~~~l~C~~~~g-~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  198 (222)
T 4i0k_A          120 KDLRPGNMVTITCSSYQG-YPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDA  198 (222)
T ss_dssp             ----CCSEEEEEEEEEEE-BSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred             ceecCCceEEEEEecccc-cCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCce
Confidence            345679999999999 66 89999999984 44443321111111  233445788899999999999999999998888


Q ss_pred             EEEEEEe
Q psy17205         93 YLELSGK   99 (106)
Q Consensus        93 ~~~l~~~   99 (106)
                      .+.|.+.
T Consensus       199 ~~~l~V~  205 (222)
T 4i0k_A          199 HGSVTIT  205 (222)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEe
Confidence            7777743

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.27  E-value=2.5e-11  Score=71.83  Aligned_cols=79  Identities=27%  Similarity=0.389  Sum_probs=62.8

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      ...+..|+.+.|.|.+.+ .|.+.+.|++++..+...... ..  .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus       231 ~~~~~~G~~v~l~C~~~g-~p~~~v~W~~~~~~~~~~~~~-~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  306 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASG-VPTPDIAWYKKGGDLPSDKAK-FE--NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS  306 (404)
T ss_dssp             EEEEETTSCEEEECCBCC-SSCCEEEEEETTBCCCTTTEE-EE--GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEecCCCEEEEEEECC-CCCCcEEEEECCEECCCCccc-cc--ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEE
Confidence            356778999999999999 899999999999877655321 11  12337999999999999999999999888776666


Q ss_pred             EEE
Q psy17205         96 LSG   98 (106)
Q Consensus        96 l~~   98 (106)
                      |.+
T Consensus       307 l~V  309 (404)
T 3p3y_A          307 VRV  309 (404)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.27  E-value=2.2e-10  Score=57.05  Aligned_cols=77  Identities=22%  Similarity=0.284  Sum_probs=58.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.         ...++..........|+|.+++.+
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   84 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKASQ-DVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSE   84 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEeCC-CCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHH
Confidence            4455666788899999999999988 777889999753     1111         123555544455678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        85 DsG~Y~C~~~~~   96 (111)
T 1i3g_L           85 DLADYFCQQYSS   96 (111)
T ss_dssp             GCSEEEEEECSS
T ss_pred             HCEEEEEEEecC
Confidence            999999999875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.26  E-value=6.2e-11  Score=70.19  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=64.7

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.... +......   ..|.|.++...|.|.|.|.+.|..|..
T Consensus       226 ~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (403)
T 3laf_A          226 QRPSNVIAIEGKDAVLECCVSG-YPPPSFTWLRGEEVIQLRSKKYSLLGG---SNLLISNVTDDDSGTYTCVVTYKNENI  301 (403)
T ss_dssp             ECCCCEEEETTSCEEECCEEEE-ESCCEEEEEETTEECCCSSSSEEEETT---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCCceEecCCCcEEEEEEcCC-CCCCeEEEEECCeeccCCCceEEECCc---cEEEEeCCCHHHCEEEEEEEEcCCCce
Confidence            3444566778999999999999 9999999999998876543 3322222   269999999999999999999988877


Q ss_pred             eEEEEEEE
Q psy17205         91 RQYLELSG   98 (106)
Q Consensus        91 ~~~~~l~~   98 (106)
                      ...+.|.+
T Consensus       302 ~~~~~l~V  309 (403)
T 3laf_A          302 SASAELTV  309 (403)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            66655553

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.26  E-value=1.5e-10  Score=64.96  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=62.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+..+.+..|+.+.|.|.+.+ .+.+ .+.|++++..+....          ..|.|.++...|.|.|.|.+.+.
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~-~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLH-LPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSS-CCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEESSS
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCC-CCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEecC
Confidence            45566666677889999999999988 8877 999999998876532          26899999999999999999987


Q ss_pred             CCcceEEEEE
Q psy17205         87 MGKTRQYLEL   96 (106)
Q Consensus        87 ~~~~~~~~~l   96 (106)
                      .+.....+.+
T Consensus        71 ~~s~~~~l~v   80 (262)
T 3rjd_A           71 GRSDPIQLEI   80 (262)
T ss_dssp             CCCCCEEEEE
T ss_pred             CccccEEEEE
Confidence            6655444433

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.26  E-value=1.8e-10  Score=62.97  Aligned_cols=74  Identities=15%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcC------------CCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLD------------TTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~------------~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      ...+ .+.+..|+.+.|.|...   +.+.+.|+++  +..+.            ...++..........|.|.++...|.
T Consensus         5 ~~~~-~~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   80 (211)
T 3tv3_L            5 TQPP-SASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE   80 (211)
T ss_dssp             BCCS-EEEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCc-eEEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence            3444 67888999999999886   6778999984  21110            22355555555677899999999999


Q ss_pred             EeeEEEEEcCCC
Q psy17205         77 GNYSCVAENSMG   88 (106)
Q Consensus        77 g~y~C~~~~~~~   88 (106)
                      |.|.|.+.+..+
T Consensus        81 G~Y~C~~~~~~~   92 (211)
T 3tv3_L           81 AVYYCGSLVGNW   92 (211)
T ss_dssp             EEEEEEEEETTT
T ss_pred             EEEEEEEecCCC
Confidence            999999999766

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.26  E-value=5.1e-11  Score=64.63  Aligned_cols=78  Identities=14%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+...+.. .+..|+++.|.|.+.+ .+. .+.|++++..+..... ..........|.|.++...|.|.|.|.+.|.
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTL-EAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCT-TCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCC-CCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            3455554543 6779999999999988 655 8999999876543110 0001133557999999999999999999887


Q ss_pred             CC
Q psy17205         87 MG   88 (106)
Q Consensus        87 ~~   88 (106)
                      .+
T Consensus        81 ~g   82 (196)
T 2d3v_A           81 AG   82 (196)
T ss_dssp             TE
T ss_pred             CC
Confidence            65

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.26  E-value=2.5e-10  Score=62.43  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCC--EEc------------CCCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKET--LKL------------DTTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~--~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      +..+.+..|+.+.|.|.+.+ .+   .+.+.|++++  ..+            ....++..........|.|.++...|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   85 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDE   85 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESS-SCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEeecCCCCEEEEEEecc-cccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCC
Confidence            56678889999999999988 66   4789999852  111            112455554445567899999999999


Q ss_pred             EeeEEEEEcCCC
Q psy17205         77 GNYSCVAENSMG   88 (106)
Q Consensus        77 g~y~C~~~~~~~   88 (106)
                      |.|.|.+.+..+
T Consensus        86 G~Y~C~~~~~~~   97 (212)
T 1q0x_L           86 AIYFCALWSNNK   97 (212)
T ss_dssp             EEEEEEEECSSC
T ss_pred             EEEEEEEecCch
Confidence            999999998754

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.25  E-value=9.6e-11  Score=74.96  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-------CCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-------TERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-------~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+|.+...+....+..|+.+.|.|.+.+ .|.|.+.|++++..+..       ..+... ..+   .|.|.++...|.|.
T Consensus       713 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g-~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~-~~~---~L~i~~v~~~d~G~  787 (816)
T 3dmk_A          713 VPPRWILEPTDKAFAQGSDAKVECKADG-FPKPQVTWKKAVGDTPGEYKDLKKSDNIRV-EEG---TLHVDNIQKTNEGY  787 (816)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEECEEEE-ESCCEEECCEECSSSTTCCBCCCCBTTEEE-ETT---EEEECSCCGGGCEE
T ss_pred             eCCceeeecccceecCCCcEEEEEEEec-CCCCeEEEEecCCCCCccccccccCCCEEe-cCC---EEEECcCChhhCeE
Confidence            3456665666677889999999999999 99999999997644332       122222 222   69999999999999


Q ss_pred             eEEEEEcCCCcceEEEEEE
Q psy17205         79 YSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l~   97 (106)
                      |.|.+.|..|.....+.+.
T Consensus       788 Y~C~a~N~~G~~~~~v~~~  806 (816)
T 3dmk_A          788 YLCEAINGIGSGLSAVIMI  806 (816)
T ss_dssp             EEEEEECSSSSCEEEEEEE
T ss_pred             EEEEEEeCCCCCcEEEEEE
Confidence            9999999999998876655

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.25  E-value=2.1e-11  Score=70.91  Aligned_cols=91  Identities=19%  Similarity=0.128  Sum_probs=69.9

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEe-------ecCCCCeEEEeeCCEEc--CCC--CCEEEEEcCcEEEEEEcccCCC
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFH-------FAFCRPQVIWYKETLKL--DTT--ERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~-------~~~p~p~~~w~~~~~~l--~~~--~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      ..|.+...+..+.+..|+.+.|.|...       + .|.+.+.|++++..+  ...  .++. ...+   .|.|.++...
T Consensus        17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~-~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~---~L~i~~v~~~   91 (339)
T 3o4o_C           17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASV-SPRINLTWHKNDSARTVPGEEETRMW-AQDG---ALWLLPALQE   91 (339)
T ss_dssp             -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTT-SSCCBCCCEESSCCSCCSCCSSSCEE-EETT---EEEESSBCTT
T ss_pred             hhHhhCcCceEEEEECCccEEEEeccccccccccC-CCCceEEEEECCCCcccCccccccEE-eeCC---eEEECCCCcc
Confidence            346777777888899999999999997       7 888999999998763  332  1232 2222   7999999999


Q ss_pred             CCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         75 DFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.|.|.|.+.|..+.....+.|.+..+
T Consensus        92 D~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           92 DSGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             CCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             cCEEEEEEEECCcceEEEEEEEEEEcC
Confidence            999999999998877666666665443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.25  E-value=1e-10  Score=67.73  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             EEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCCEEEEEcCcEEEEEEc-ccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTERRIMETRGRRHTLVIR-KVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+..|+.+.|.|.+.+ .|.|. +.|++++..+...  ... ...   .|.|. ++...|.|.|.|.+.|..|.....+
T Consensus       242 ~~~~~g~~~~l~C~~~g-~p~p~~i~W~~~~~~~~~~--~~~-~~~---~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~  314 (331)
T 3u83_A          242 NWYLQRMDVKLTCKADA-NPPATEYHWTTLNGSLPKG--VEA-QNR---TLFFKGPINYSLAGTYICEATNPIGTRSGQV  314 (331)
T ss_dssp             CCBTTCCCEEEEEEEEE-ESCCCEEEEEETTBSCCTT--EEE-ETT---EEEECSCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEeCCCeEEEEEeCcC-CCCCCEEEEEECCCccccc--cee-cCc---EEEEeCCCccccCeEEEEEEEeccccceEEE
Confidence            44667999999999999 89998 9999998877654  212 222   68999 8999999999999999999887777


Q ss_pred             EEEEe
Q psy17205         95 ELSGK   99 (106)
Q Consensus        95 ~l~~~   99 (106)
                      .|.+.
T Consensus       315 ~l~V~  319 (331)
T 3u83_A          315 EVNIT  319 (331)
T ss_dssp             EECCB
T ss_pred             EEEEe
Confidence            77643

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.25  E-value=2.3e-10  Score=63.66  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|.+.+ .+    .+.+.|+++.  .   .+.         ...++..........|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGE-SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESS-CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCC-ccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            344566778889999999999998 77    7889999852  1   110         123555555455668999999


Q ss_pred             CCCCCEeeEEEEEcCCCc
Q psy17205         72 LFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~~   89 (106)
                      ...|.|.|.|.+.+..+.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~  100 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPY  100 (240)
T ss_dssp             CGGGCEEEEEEECSSSSC
T ss_pred             ChhhCEEEEEEEccCCce
Confidence            999999999999987543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.25  E-value=1.3e-10  Score=68.51  Aligned_cols=79  Identities=22%  Similarity=0.258  Sum_probs=62.0

Q ss_pred             cceeeccCCeEEe---ecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCEEEEEcCcEEEEEEcccCC-CCCEeeE
Q psy17205          7 TLKLDTTERRIIE---TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERRIMETRGRRHTLVIRKVLF-TDFGNYS   80 (106)
Q Consensus         7 ~~~~~~~~~~~~~---~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~~-~~~g~y~   80 (106)
                      +|.|...+....+   ..|+.+.|.|.+.+ .|.+.+.|++++..+...  .++... .+   .|.|.++.. .|.|.|.
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g-~p~~~v~W~k~g~~~~~~~~~~~~~~-~~---~L~i~~~~~~~D~G~Y~   78 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARA-NPPATYRWKMNGTELKMGPDSRYRLV-AG---DLVISNPVKAKDAGSYQ   78 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEE-ESCCEEEEEETTEECCCSTTSSEEEE-TT---EEEEESCCHHHHCEEEE
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecC-CCCCEEEEEECCEECCcCCCccEEee-CC---eEEEecccccccCEEEE
Confidence            4667666666655   68999999999998 899999999999888654  344332 22   688999886 9999999


Q ss_pred             EEEEcCCCcc
Q psy17205         81 CVAENSMGKT   90 (106)
Q Consensus        81 C~~~~~~~~~   90 (106)
                      |.+.|..|..
T Consensus        79 C~a~n~~g~~   88 (382)
T 1cs6_A           79 CVATNARGTV   88 (382)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEcCCcEE
Confidence            9999987654

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.25  E-value=2.8e-10  Score=56.45  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E----EcCCCCCEEEEE--cCcEEEEEEcccCCCCCEee
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L----KLDTTERRIMET--RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~----~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +...+..+.+..|+++.|.|...+ ..  .+.+.|++..  .    .+....++....  ......|.|.+++.+|.|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRD-TACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTY   81 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECC-SSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCC-CcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            344566788889999999999977 53  5689999863  1    222334554432  23467899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (108)
T 2coq_A           82 KCKAYR   87 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999987

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.24  E-value=2.1e-10  Score=57.72  Aligned_cols=86  Identities=17%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCCEEcCC-------------CCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKETLKLDT-------------TERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~~l~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      +..+.+..|+++.|.|...+ ..  ...+.|++.+..+..             ..|+.+.   ...+|.|.++...|.|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~   85 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSS-TTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG---PGLGLTLQSLTVNDTGE   85 (117)
T ss_dssp             SCCEEEETTCCEEECEEEES-CCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEEC---STTCEEECSCCGGGCEE
T ss_pred             cCCEEEecCCCEEEEEEecC-CCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeC---CceEEEEeeCChhhCEE
Confidence            44577889999999999876 32  346899987643210             1233321   13479999999999999


Q ss_pred             eEEEEEc-CCCcceEEEEEEEeCCCC
Q psy17205         79 YSCVAEN-SMGKTRQYLELSGKYPNA  103 (106)
Q Consensus        79 y~C~~~~-~~~~~~~~~~l~~~~~~~  103 (106)
                      |.|.+.+ ..|.....+.|.+..|+.
T Consensus        86 Y~C~v~~~~~g~~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           86 YFCIYHTYPDGTYTGRIFLEVLESSV  111 (117)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEECC--
T ss_pred             EEEEEEECCCCCeEEEEEEEEEccCc
Confidence            9999765 456777777777665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=1.1e-11  Score=75.02  Aligned_cols=86  Identities=23%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-EEcCCC---CCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-LKLDTT---ERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-~~l~~~---~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      |.+...+....+..|+.+.+.|.+.   |.|.+.|++++ ..+...   .++.....+   ++.|.++...|.|.|.|.+
T Consensus       353 P~i~~~~~~~~v~~G~~~~l~C~~~---p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g---~L~i~~v~~~D~G~Y~C~a  426 (452)
T 3zyi_A          353 PFIMDAPRDLNISEGRMAELKCRTP---PMSSVKWLLPNGTVLSHASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMV  426 (452)
T ss_dssp             CCCSBCCCCEECCTTSCCEECCBCC---TTSEEEEECTTSCEECSSCCCSSCEECTTS---CEECSSCCTTCCEEEEEEE
T ss_pred             cccccccccccccCCCEEEEEEeCC---CCCcEEEEeCCCcEeccCCCCCCEEECCCC---eEEEeecCHHHCEEEEEEE
Confidence            4455556668888999999999764   78899999854 333322   133222222   6999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy17205         84 ENSMGKTRQYLELSGK   99 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~   99 (106)
                      .|..|...+.+.+.+.
T Consensus       427 ~N~~G~~~~~~~l~v~  442 (452)
T 3zyi_A          427 TNVAGNSNASAYLNVS  442 (452)
T ss_dssp             ECSSCEEEEEEEEEC-
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999998888777743

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.24  E-value=1.4e-10  Score=66.01  Aligned_cols=92  Identities=22%  Similarity=0.251  Sum_probs=65.6

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEc--CcEEEEEEcccCCCCCEeeEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +|.+...+....+..|+.+.|.|.+.+ .+. +.+.|++++..+...........  .....|.|.++...|.|.|.|.+
T Consensus       186 ~p~i~~~~~~~~~~~g~~v~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  264 (292)
T 4dkd_C          186 PPALTLVPAELVRIRGEAAQIVCSASS-VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA  264 (292)
T ss_dssp             SCEEEEESSCBCCCSSSCEEEEEEEEE-SSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEE
T ss_pred             CCeEEccCCceeEecCCCEEEEEEecC-CCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEE
Confidence            555655555555678999999999998 664 56778888766554322111111  12347999999999999999999


Q ss_pred             EcCCCcceEEEEEEEe
Q psy17205         84 ENSMGKTRQYLELSGK   99 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~   99 (106)
                      .|..|.....+.|.+.
T Consensus       265 ~N~~g~~~~~~~l~V~  280 (292)
T 4dkd_C          265 SNVQGKHSTSMFFRVV  280 (292)
T ss_dssp             ECSSCEEEEEEEECC-
T ss_pred             ecCCCCceeEEEEEEe
Confidence            9999988877777643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.24  E-value=3.1e-10  Score=63.51  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=60.9

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EE---------cCCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LK---------LDTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~---------l~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+.+.|.|...+ .+.+.+.|++..     ..         .....++..........|.|.++...
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQ-DIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecc-cCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            4555667788899999999999999 899999999842     11         11124555555556678999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus        85 D~G~Y~C~~~n~~~   98 (250)
T 3esu_F           85 DIGTYFCQQGNTLP   98 (250)
T ss_dssp             GCEEEEEEECSSSS
T ss_pred             hCEEEEEEEeeCCC
Confidence            99999999988654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.24  E-value=2.8e-10  Score=61.74  Aligned_cols=70  Identities=17%  Similarity=0.008  Sum_probs=48.5

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EE-EEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IM-ETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~-~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.|.|.+.+ . .+.+.|++++..+...... .. ........|.|.++...|.|.|.|.+.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~-~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQV-A-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSS-C-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCC-C-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            45678999999999998 6 7899999998766432111 11 1112345799999999999999999999754

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.24  E-value=3.6e-10  Score=56.38  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCE-----EcC---------CCCCEEEEE--cCcEEEEEEcccCCCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETL-----KLD---------TTERRIMET--RGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~-----~l~---------~~~~~~~~~--~~~~~~l~~~~~~~~~~   76 (106)
                      +..+.+..|+++.|.|.... ... ..+.|++...     .+.         ...++.+..  ......|+|.+++.+|+
T Consensus         8 p~~v~~~~G~~v~L~C~~~~-~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTS-GWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECG-GGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCEEEEeCCCcEEEEeECCC-CcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC
Confidence            45678889999999999976 433 3599998641     111         113444432  23456899999999999


Q ss_pred             EeeEEEEEcCCCcceEEEEEEEeCCC
Q psy17205         77 GNYSCVAENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        77 g~y~C~~~~~~~~~~~~~~l~~~~~~  102 (106)
                      |.|.|.+.+........+.|.+.++|
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           87 GIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             EEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            99999999875445567777776553

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.23  E-value=3.5e-12  Score=69.38  Aligned_cols=73  Identities=23%  Similarity=0.301  Sum_probs=56.1

Q ss_pred             EEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCE-------EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERR-------IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~-------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.|.|.+ .+ .|.+.+.|++++..+....+.       ..........|.|.++...|.|.|.|.+.|..|
T Consensus       117 ~~~~~g~~~~l~C~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  195 (209)
T 1nbq_A          117 SSATIGNRAVLTCSEQDG-SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG  195 (209)
T ss_dssp             SEEETTSCEEECCCCCSC-BSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             cceecCCEEEEEEeCCCC-CCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcC
Confidence            456789999999996 77 899999999998877653211       001111234799999999999999999999988


Q ss_pred             cc
Q psy17205         89 KT   90 (106)
Q Consensus        89 ~~   90 (106)
                      ..
T Consensus       196 ~~  197 (209)
T 1nbq_A          196 TP  197 (209)
T ss_dssp             CC
T ss_pred             cc
Confidence            87

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.23  E-value=1e-10  Score=63.66  Aligned_cols=89  Identities=18%  Similarity=0.302  Sum_probs=62.0

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCC----CCeEEEee----------------CCEEcCC-----CCCEEEEE---cCcE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFC----RPQVIWYK----------------ETLKLDT-----TERRIMET---RGRR   63 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~----------------~~~~l~~-----~~~~~~~~---~~~~   63 (106)
                      .....+.+..|+.+.|.|...+ .+    .+.+.|++                ++..+..     ..+..+..   ....
T Consensus         5 ~~~~~v~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            5 TPEQRIEKAKGETAYLPCKFTL-SPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             -CEEEEEEETTSCEEECCBCCC-CTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             cCCceEEEecCCCEEEEEEEec-CCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3445678889999999999988 66    46999987                3333321     22333221   1134


Q ss_pred             EEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        64 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      ..|.|.++...|.|.|.|.+.+..+.....+.|.+..+
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~  121 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK  121 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC
Confidence            56999999999999999999998777666666665443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.23  E-value=3.7e-10  Score=64.30  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----EcC---------CCCCEEEEEcCcEEEEEEcccCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KLD---------TTERRIMETRGRRHTLVIRKVLF   73 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l~---------~~~~~~~~~~~~~~~l~~~~~~~   73 (106)
                      ..+...+..+.+..|+++.|.|...+ .+.+.+.|++++.     .+.         ...++..........|.|.++..
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQ-DVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCC-CCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            34555677788999999999999998 8889999998531     111         12355555545566899999999


Q ss_pred             CCCEeeEEEEEcCCC
Q psy17205         74 TDFGNYSCVAENSMG   88 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~   88 (106)
                      .|.|.|.|.+.|..+
T Consensus        92 ~DsG~Y~C~~~n~~~  106 (276)
T 3auv_A           92 EDFATYYCQQHYTTP  106 (276)
T ss_dssp             GGCEEEEEEECSSSS
T ss_pred             hhCEEEEEEEecCCc
Confidence            999999999998644

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.23  E-value=1.2e-10  Score=62.12  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=54.2

Q ss_pred             EEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc-eEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT-RQYL   94 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~-~~~~   94 (106)
                      ..+..|+.+.|.|.+.+ .+. +.+.|++++..+...        .....|.|.++...|.|.|.|.+.|..+.. ...+
T Consensus        98 ~~~~~g~~~~l~C~~~~-~~~~~~~~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~  168 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWK-NTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV  168 (175)
T ss_dssp             SEEETTCCEEEEEEECT-TCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             ceecCCCCEEEEEEcCC-CCCceEEEEEECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccE
Confidence            45678999999999987 655 499999998765321        112369999999999999999999965432 2344


Q ss_pred             EEEE
Q psy17205         95 ELSG   98 (106)
Q Consensus        95 ~l~~   98 (106)
                      .|.+
T Consensus       169 ~l~V  172 (175)
T 1fnl_A          169 NITI  172 (175)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.23  E-value=7.5e-10  Score=57.82  Aligned_cols=77  Identities=23%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.||+..     ..+.         ...++..........|+|.+++..
T Consensus        18 ~v~q~p~~v~v~~G~sVtL~C~~s~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           18 VLTQSPATLSVSPGERATLSCRASQ-SVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPE   96 (146)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECC-CCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHH
Confidence            4455667788899999999999988 677889999853     1111         123565554455678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        97 DsG~Y~C~~~~~  108 (146)
T 2yc1_B           97 DFAIYYCQQYRY  108 (146)
T ss_dssp             GCSEEEEEECSS
T ss_pred             HCEEEEEEEecC
Confidence            999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.23  E-value=2.5e-10  Score=70.64  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=68.0

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC-----C--------CCCEEEEEcC---cEEEEEEc
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD-----T--------TERRIMETRG---RRHTLVIR   69 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~-----~--------~~~~~~~~~~---~~~~l~~~   69 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+..+.+.+.|++++....     .        ..+..+...+   ....|.|.
T Consensus       111 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~  190 (585)
T 2ocw_A          111 QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN  190 (585)
T ss_pred             cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEc
Confidence            345555566667888999999999998723457899999874321     0        1233333322   23479999


Q ss_pred             ccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         70 KVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      ++...|.|.|.|.+.|..+.....+.|.+..+
T Consensus       191 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (585)
T 2ocw_A          191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP  222 (585)
T ss_pred             cCChhHCeEEEEEeccCCccccceEEEEEccC
Confidence            99999999999999998887776666665543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.23  E-value=5.4e-11  Score=64.85  Aligned_cols=84  Identities=24%  Similarity=0.351  Sum_probs=61.2

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-----CEEEEEcCcEE--EEEEcccCCCCCEe
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-----RRIMETRGRRH--TLVIRKVLFTDFGN   78 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-----~~~~~~~~~~~--~l~~~~~~~~~~g~   78 (106)
                      .+|.+...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....     .......+...  .+.+.++...|.|.
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEG-RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEE-ESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCC-CCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            4577777777888999999999999998 8999999999998776432     11111112111  23445668899999


Q ss_pred             eEEEEEcCCCcc
Q psy17205         79 YSCVAENSMGKT   90 (106)
Q Consensus        79 y~C~~~~~~~~~   90 (106)
                      |.|.+.+..+..
T Consensus        87 Y~C~~~n~~g~~   98 (212)
T 2v9r_A           87 YVCVARNYLGEA   98 (212)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEECCCCce
Confidence            999999987654

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.23  E-value=1.1e-09  Score=55.88  Aligned_cols=78  Identities=19%  Similarity=0.273  Sum_probs=57.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeC--CE----EcCCCCCEEEEEc--CcEEEEEEcccCCCCCEe
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKE--TL----KLDTTERRIMETR--GRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~--~~----~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~   78 (106)
                      .+...+..+.+..|+++.|.|...+ .  +.+.+.|++.  +.    .+....++.....  .....|+|.+++.+|.|.
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   80 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRD-ASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGT   80 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEES-CSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             ceEECCceEEEeCCCCEEEEEEeec-CccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEE
Confidence            3455677788899999999999987 5  4678999984  21    2223345544332  356789999999999999


Q ss_pred             eEEEEEcCC
Q psy17205         79 YSCVAENSM   87 (106)
Q Consensus        79 y~C~~~~~~   87 (106)
                      |.|.+.+..
T Consensus        81 Y~C~~~~~~   89 (126)
T 3moq_A           81 YKCQAFYVF   89 (126)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEcC
Confidence            999998753

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.23  E-value=2.1e-10  Score=58.65  Aligned_cols=77  Identities=22%  Similarity=0.273  Sum_probs=55.0

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeC--C---EEc-C---------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKE--T---LKL-D---------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~--~---~~l-~---------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+.+.|.|...+ .. ...+.|++.  +   ..+ .         ...++....  ......|.|.+++.
T Consensus         6 Q~P~~~~v~~G~~vtL~C~~s~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   84 (129)
T 3rrq_A            6 FSPALLVVTEGDNATFTCSFSN-TSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARR   84 (129)
T ss_dssp             EECSEEEEETTSCEEEEEECCC-CC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCG
T ss_pred             ECCCEEEEeCCCCEEEEeEecC-CCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCCh
Confidence            4566788889999999999987 54 467899863  1   111 0         013554442  23467899999999


Q ss_pred             CCCEeeEEEEEcCCCc
Q psy17205         74 TDFGNYSCVAENSMGK   89 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~~   89 (106)
                      .|.|.|.|.+.+..+.
T Consensus        85 ~Dsg~Y~C~~~~~~~~  100 (129)
T 3rrq_A           85 NDSGTYLCGAISLAPK  100 (129)
T ss_dssp             GGCEEEEEEEEECGGG
T ss_pred             hHCEEEEEEEEecCCC
Confidence            9999999999986543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.23  E-value=1.2e-10  Score=58.21  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCC----eEEEeeCCEEc-------------CCCCCEEEEEc---C--cEEEEEEcccC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRP----QVIWYKETLKL-------------DTTERRIMETR---G--RRHTLVIRKVL   72 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p----~~~w~~~~~~l-------------~~~~~~~~~~~---~--~~~~l~~~~~~   72 (106)
                      ..+.+..|+++.|.|....+.+.+    .+.|++.+...             ....+..+...   .  ...+|.|.++.
T Consensus         8 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~   87 (118)
T 3udw_C            8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLR   87 (118)
T ss_dssp             SEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCC
T ss_pred             CeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecC
Confidence            347788999999999995414444    38999874211             11122222111   0  14579999999


Q ss_pred             CCCCEeeEEEEEc-CCCcceEEEEEEEeCC
Q psy17205         73 FTDFGNYSCVAEN-SMGKTRQYLELSGKYP  101 (106)
Q Consensus        73 ~~~~g~y~C~~~~-~~~~~~~~~~l~~~~~  101 (106)
                      ..|.|.|.|.+.+ ..+.....+.|.+..+
T Consensus        88 ~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~  117 (118)
T 3udw_C           88 VEDEGNYTCLFVTFPQGSRSVDIWLRVLAK  117 (118)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             hHHCeEEEEEEEECCCCCccceEEEEEEeC
Confidence            9999999999998 6665556666665443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.23  E-value=1.6e-10  Score=63.41  Aligned_cols=81  Identities=12%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEE--EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ....|+.+.|.|.+.+ .|.|.+.|+++ +..+........  ...+.........+...|.|.|.|.+.|..|......
T Consensus       127 ~~~~g~~v~L~C~~~g-~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~  205 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEG-YPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTA  205 (222)
T ss_dssp             EETTTTEEEEEEEEEE-BSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred             eecCCCcEEEEEEecC-CCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEE
Confidence            4567999999999999 99999999998 555443211111  1111122222234456789999999999999888877


Q ss_pred             EEEEe
Q psy17205         95 ELSGK   99 (106)
Q Consensus        95 ~l~~~   99 (106)
                      .|.+.
T Consensus       206 ~l~v~  210 (222)
T 3sbw_C          206 ELVIP  210 (222)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            77744

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.23  E-value=8e-10  Score=62.04  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=59.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCCE--E---c---------CCCCCEEEEEcCcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKETL--K---L---------DTTERRIMETRGRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~~--~---l---------~~~~~~~~~~~~~~~~l~~~   69 (106)
                      .+...+..+.+..|+.+.|.|...+ .+     .+.+.|++++.  .   +         ....++.....+....|.|.
T Consensus        36 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           36 LMTQTPLSLPVNLGEQASISCRSSQ-SIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EEEeCCceEEEeCCCcEEEEEEcCC-CccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            3445566788899999999999988 76     58999998541  1   0         01235555554556789999


Q ss_pred             ccCCCCCEeeEEEEEcCCC
Q psy17205         70 KVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~   88 (106)
                      ++...|.|.|.|.+.+..+
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~  133 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVP  133 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSS
T ss_pred             CCCcccCEEEEEEEEcCCc
Confidence            9999999999999988654

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.22  E-value=1.4e-10  Score=57.75  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=56.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|...+ .+    .+.+.|++..  .   .+.         ...++..........|.|.++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v   82 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGE-SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESS-CCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCC-CcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCC
Confidence            334556678889999999999987 66    4689999852  1   111         123565554455678999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +..|.|.|.|.+.+.
T Consensus        83 ~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           83 EADDVATYYCQQTNE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             CcccCEEEEEEEecC
Confidence            999999999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.22  E-value=5e-11  Score=63.12  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=51.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..+..|+.+.|.|.+.++.|.+.+.|++++..+...        .....|.|.++...|.|.|.|.+.|..|.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            456789999999999542567899999998765421        12336999999999999999999998775

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.22  E-value=3.9e-10  Score=63.04  Aligned_cols=78  Identities=24%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+++.|.|...+ .+.+.+.|+++.     ..+.         ...++..........|.|.++...|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQ-SIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCC-CCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            445566788899999999999998 888999999852     1110         1235555544556789999999999


Q ss_pred             CEeeEEEEEcCCC
Q psy17205         76 FGNYSCVAENSMG   88 (106)
Q Consensus        76 ~g~y~C~~~~~~~   88 (106)
                      .|.|.|.+.+..+
T Consensus        83 ~G~Y~C~~~n~~~   95 (242)
T 2znx_A           83 FGMYFCQQSNSXP   95 (242)
T ss_dssp             CEEEEEEECSSSS
T ss_pred             CEEEEEeEecCCc
Confidence            9999999998643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.22  E-value=1.9e-10  Score=66.67  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCEEcC---------CCCCEEEEEc-----CcEEEEEEcccC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETLKLD---------TTERRIMETR-----GRRHTLVIRKVL   72 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~~l~---------~~~~~~~~~~-----~~~~~l~~~~~~   72 (106)
                      ..+...+..+.+..|+.+.|.|.+.+ . |.+.+.|++++....         ...++.....     .....|.|.++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTS-LIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESC-CCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccC-cCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            34556677888999999999999998 6 888999999864321         0112222111     224469999999


Q ss_pred             CCCCEeeEEEEEcCCCc
Q psy17205         73 FTDFGNYSCVAENSMGK   89 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~~   89 (106)
                      ..|.|.|.|.+.|..+.
T Consensus        83 ~~D~G~Y~C~a~n~~~~   99 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSP   99 (327)
T ss_dssp             GGGCEEEEEEEEESSTT
T ss_pred             cccCeEEEEEeecCCCc
Confidence            99999999999987553

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.22  E-value=4.5e-11  Score=64.97  Aligned_cols=77  Identities=17%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEc------------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKL------------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      +..+...+..+.+..|+.+.|.|...+ .|.+.+.|++++..+            ....++....    ..|.|.++...
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~   78 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSG-FSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRE   78 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEES-CSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeC-CCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHH
Confidence            345556667778889999999999999 899999999876431            1122333222    37999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus        79 d~G~Y~C~~~~~~g   92 (209)
T 1nbq_A           79 DTGTYTCMVSEEGG   92 (209)
T ss_dssp             SCSEEEEEEEETTS
T ss_pred             HCcEEEEEEecCCC
Confidence            99999999998755

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.21  E-value=5e-11  Score=63.60  Aligned_cols=79  Identities=22%  Similarity=0.274  Sum_probs=59.1

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+...+..+.+..|+.+.|.|.+.+ .+.+ .+.|++++..+...          ...|.|.++...|.|.|.|.+.+
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~   72 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNN-FFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQ   72 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTC-C----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTT
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCC-CCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCC
Confidence            345555666667889999999999988 7765 68999999877643          23799999999999999999998


Q ss_pred             CCCcceEEEEE
Q psy17205         86 SMGKTRQYLEL   96 (106)
Q Consensus        86 ~~~~~~~~~~l   96 (106)
                      ..+.....+.+
T Consensus        73 ~~~s~~~~l~V   83 (176)
T 1f2q_A           73 VNESEPVYLEV   83 (176)
T ss_dssp             SSCCCCEEEEE
T ss_pred             ccccccEEEEE
Confidence            66554444443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.21  E-value=2.3e-10  Score=60.52  Aligned_cols=78  Identities=15%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+...+....+..|+.+.|.|.+.+ .+ .+.+.|++++..+.....          .+.+.++...|.|.|.|.+.+.
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~-~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGAR-SPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCC-CSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTS
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecC-CCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCC
Confidence            45555566667789999999999998 76 678999999988876422          2456678899999999999976


Q ss_pred             CCcceEEEEE
Q psy17205         87 MGKTRQYLEL   96 (106)
Q Consensus        87 ~~~~~~~~~l   96 (106)
                      .......+.+
T Consensus        74 ~~s~~~~l~v   83 (170)
T 3ry4_A           74 SLSDPVHLTV   83 (170)
T ss_dssp             BCCCCEEEEE
T ss_pred             CceEeEEEEE
Confidence            5444433333

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.21  E-value=1.5e-10  Score=57.80  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC-------------------CCCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD-------------------TTERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~-------------------~~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      ..+..|+++.|.|.... ...+.+.|+++.....                   ...|..+..++   +|.|.++...|.|
T Consensus        10 ~~~~~G~~v~L~~~~~p-~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng---SL~I~nvt~~D~G   85 (111)
T 2qsq_A           10 FNVAEGKEVLLLVHNLP-QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA---SLLIQNIIQNDAG   85 (111)
T ss_dssp             SEEETTSCEEEEEESCC-SSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS---CEEECSCCGGGCE
T ss_pred             ceeccCCCEEEEEeCCC-CCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCC---cEEEccCcccCCe
Confidence            35779999999997644 4445789998753211                   12234333333   7999999999999


Q ss_pred             eeEEEEEcCCC-cceEEEEEEEeC
Q psy17205         78 NYSCVAENSMG-KTRQYLELSGKY  100 (106)
Q Consensus        78 ~y~C~~~~~~~-~~~~~~~l~~~~  100 (106)
                      .|.|.+.+..+ .....+.|.+..
T Consensus        86 ~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           86 FYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEec
Confidence            99999998755 345566665443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.21  E-value=1.6e-10  Score=61.91  Aligned_cols=82  Identities=16%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             eEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcC----------CCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         16 RIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLD----------TTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~----------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+....|+.+.|.|.. ....+.+.+.|++++..+.          ...++.+...+   .|.|.++...|.|.|.|.+.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEE
Confidence            4667889999999943 2113567899999986432          22344432222   49999999999999999999


Q ss_pred             cCCCcc--eEEEEEEEeC
Q psy17205         85 NSMGKT--RQYLELSGKY  100 (106)
Q Consensus        85 ~~~~~~--~~~~~l~~~~  100 (106)
                      |..|..  ...+.|.+..
T Consensus        82 n~~g~~~~~~~~~l~V~~   99 (176)
T 1hng_A           82 STNGTRILNKALDLRILE   99 (176)
T ss_dssp             ETTCCEEEEEEEEEEEEC
T ss_pred             eCCCCEEEEEEEEEEEeC
Confidence            988876  4556666444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.20  E-value=2.8e-12  Score=74.84  Aligned_cols=83  Identities=23%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             EeecCCeEEEEEEEee---cCCCCeEEEeeCCEEcCC-CCCEEEEE-------c--CcEEEEEEcccCCCCC-EeeEEEE
Q psy17205         18 IETRGRRHTLIFFFHF---AFCRPQVIWYKETLKLDT-TERRIMET-------R--GRRHTLVIRKVLFTDF-GNYSCVA   83 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~---~~p~p~~~w~~~~~~l~~-~~~~~~~~-------~--~~~~~l~~~~~~~~~~-g~y~C~~   83 (106)
                      .+..|+.+.|.|.+.+   +.|.|.+.|++++..+.. ..++....       .  .....|.|.++...|. |.|.|.+
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  316 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA  316 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence            6778999999999994   168899999999877655 21211100       0  1123489999999999 9999999


Q ss_pred             EcCCCcceEEEEEEEeC
Q psy17205         84 ENSMGKTRQYLELSGKY  100 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~  100 (106)
                      .|..|.....+.|.+..
T Consensus       317 ~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          317 RSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ECSSCEEEEECC-----
T ss_pred             EcCCCcEEEEEEEeeec
Confidence            99999888877776544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.20  E-value=6.1e-10  Score=62.65  Aligned_cols=79  Identities=23%  Similarity=0.291  Sum_probs=58.9

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeC--CEEcC------------CCCCEEEEEcCcEEEEEEcccC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKE--TLKLD------------TTERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~--~~~l~------------~~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      +.+...+..+.+..|+.+.|.|...+ .+. +.+.|++.  +..+.            ...++..........|.|.++.
T Consensus       150 ~~~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          150 IVLTQAPGTLSLSPGERATFSCRSSH-SIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESS-CCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEEecCCeEEEeCCCCEEEEEEECC-CcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            34555566788889999999999998 776 89999983  21111            2235555555556789999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus       229 ~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          229 PEDFALYYCQVYGAS  243 (256)
T ss_dssp             GGGCSEEEEEECCSS
T ss_pred             HhHCEEEEEEEeeCC
Confidence            999999999998853

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.19  E-value=2.1e-10  Score=63.76  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE-----Ec---------CCCCCEEEEE--cCcEEEEEEcccC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL-----KL---------DTTERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~-----~l---------~~~~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      .+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++++.     .+         ....++....  ......|.|.++.
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~-~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  207 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYEN-SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQ  207 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCC-TTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCC
T ss_pred             eEEccCceEEEeCCCeEEEEEEEec-CCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCC
Confidence            3344455677889999999999999 8899999998631     11         0112333331  2335689999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      ..|.|.|.|.+.|.
T Consensus       208 ~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          208 PGDSATYFCAAIDT  221 (238)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HHHCEEEEEEEeeC
Confidence            99999999999987

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.19  E-value=7.6e-12  Score=59.14  Aligned_cols=60  Identities=18%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEccc-CCCCCEeeEEEEEc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV-LFTDFGNYSCVAEN   85 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~~~g~y~C~~~~   85 (106)
                      +....+..|++++|.|.+.+ .|.  +.|++++..+....         ...|.|.++ ...|+|.|.|.+.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g-~P~--i~W~kdg~~l~~~~---------~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDS-DEN--LKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCC-CSS--CEEEETTEECTTCC---------SSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCC-CCc--EEEEECCEECcCCC---------CCEEEECccCccCcCEEEEEEEcc
Confidence            44456678999999999998 773  99999999886531         126889996 67999999999865

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.19  E-value=4.5e-10  Score=62.74  Aligned_cols=78  Identities=15%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee----------------CCEEcCCC---CCEEEEE-cCcEEEEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK----------------ETLKLDTT---ERRIMET-RGRRHTLVI   68 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~----------------~~~~l~~~---~~~~~~~-~~~~~~l~~   68 (106)
                      .+...+..+.+..|+.+.|.|...+ .+.+.+.|++                ++......   .++.+.. ......|.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLD-FQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESS-SCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecC-CCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            3455566788899999999999999 8899999998                22222211   3444432 234668999


Q ss_pred             cccCCCCCEeeEEEEEcCC
Q psy17205         69 RKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++...|.|.|.|.+.+..
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~  100 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSG  100 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSS
T ss_pred             CCCCHHHCEEEEEEEecCC
Confidence            9999999999999998653

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.19  E-value=3.6e-10  Score=57.53  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+++.|.|...+ .+    .+.+.|++..     ..+.         ...++..........|+|.++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v   82 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASE-SVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSV   82 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESS-CCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCC-CcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCC
Confidence            445566788899999999999988 65    5679999842     1110         123555554456778999999


Q ss_pred             CCCCCEeeEEEEEcCC
Q psy17205         72 LFTDFGNYSCVAENSM   87 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~   87 (106)
                      +..|.|.|.|.+.+..
T Consensus        83 ~~~DsG~Y~C~~~~~~   98 (126)
T 4ffy_L           83 ETDDAATYYCQQNNED   98 (126)
T ss_dssp             CGGGCEEEEEEECSSS
T ss_pred             CHHHCEEEEEEEecCC
Confidence            9999999999998753

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.19  E-value=2.5e-10  Score=58.11  Aligned_cols=87  Identities=23%  Similarity=0.235  Sum_probs=60.1

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEE-----------cCC------CCCEEEEEc---CcEEEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLK-----------LDT------TERRIMETR---GRRHTLVI   68 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~-----------l~~------~~~~~~~~~---~~~~~l~~   68 (106)
                      .....+....|+++.|.|.... ...   ..+.|++.+..           ...      ..+..+...   ....+|.|
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~-~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I   88 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEP-DIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRL   88 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECC-CSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEE
T ss_pred             ccCceEEEeCCCCEEEEEEEcC-CcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEE
Confidence            3444567788999999999865 333   36899986421           000      112222111   12457999


Q ss_pred             cccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         69 RKVLFTDFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      .+++..|.|.|.|.+.+..+...+.+.|.+-
T Consensus        89 ~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           89 KNVQLTDAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCChHHCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            9999999999999999998888888888743

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.19  E-value=2e-10  Score=61.80  Aligned_cols=69  Identities=14%  Similarity=-0.024  Sum_probs=52.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+...+.. .+..|+++.|.|.+.+  +.+.+.|++++...       .   .....|.|.++...|.|.|.|.+.|.
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~--~~~~~~W~k~g~~~-------~---~~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP--GVDLYRLEKLSSSR-------Y---QDQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST--TCSEEEEEETTTCC-------E---ESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC--CCCEEEEEECCccc-------c---CcccEEEECcCChhhCceEEEEEEcC
Confidence            4555554543 6789999999999866  67899999987541       1   11237999999999999999999997


Q ss_pred             CC
Q psy17205         87 MG   88 (106)
Q Consensus        87 ~~   88 (106)
                      .+
T Consensus        75 ~g   76 (184)
T 2gi7_A           75 SL   76 (184)
T ss_dssp             TE
T ss_pred             CC
Confidence            64

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.19  E-value=7e-10  Score=63.35  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee--CCEEcC------------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK--ETLKLD------------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~--~~~~l~------------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+.+.|.|.+.+ .+ +.+.|++  ++..+.            ...++..........|.|.++...|
T Consensus       165 ~~~~p~~~~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  242 (282)
T 1qok_A          165 LTQSPAIMSASPGEKVTITCSASS-SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAED  242 (282)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EecCCCEEEEcCCCcEEEEEEecC-CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhH
Confidence            344455677889999999999998 78 8999998  443321            1235554444456689999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .|.|.|.+.+.
T Consensus       243 sG~Y~C~a~~~  253 (282)
T 1qok_A          243 AATYYCQQRSS  253 (282)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEeeC
Confidence            99999999874

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.19  E-value=4.4e-10  Score=56.11  Aligned_cols=77  Identities=27%  Similarity=0.395  Sum_probs=55.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c-------CCCCCEEEEE---cCcEEEEEEcccCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L-------DTTERRIMET---RGRRHTLVIRKVLFT   74 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l-------~~~~~~~~~~---~~~~~~l~~~~~~~~   74 (106)
                      +...+..+.+..|+.+.|.|...+ .+ +.+.|++..  ..   +       ....++....   ......|.|.+++..
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   81 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTT-TM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             eEECCCEEEEecCCcEEEEEEECC-CC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChh
Confidence            344566778889999999999987 54 689999753  11   1       0122443332   234568999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus        82 DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           82 DSGTYFCAAEASSG   95 (113)
T ss_dssp             GCEEEEEEEECSSS
T ss_pred             hCEEEEEEEecCCC
Confidence            99999999998754

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.18  E-value=9.7e-11  Score=66.02  Aligned_cols=74  Identities=20%  Similarity=0.158  Sum_probs=56.0

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEee--CCEEcC------------CCCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYK--ETLKLD------------TTERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~--~~~~l~------------~~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+..+.+..|+.+.|.|.+.+ .+.+.+.|++  ++..+.            ...++..........|.|.++...|.|.
T Consensus       145 ~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  223 (257)
T 1f3r_B          145 SPSLLSASVGDRVTLSCKGSQ-NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT  223 (257)
T ss_dssp             ETSEECCCTTCCEEEEEECSS-CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             cCCEEEEcCCCCEEEEEEECC-cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEE
Confidence            344566788999999999998 8888999998  443221            1235544444456689999999999999


Q ss_pred             eEEEEEcCC
Q psy17205         79 YSCVAENSM   87 (106)
Q Consensus        79 y~C~~~~~~   87 (106)
                      |.|.+.|..
T Consensus       224 Y~C~a~n~~  232 (257)
T 1f3r_B          224 YFCYQYNNG  232 (257)
T ss_dssp             EEEEEESSS
T ss_pred             EEEEEeCCC
Confidence            999999863

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.18  E-value=1e-09  Score=54.86  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=55.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E----EcCCCCCEEEEE--cCcEEEEEEcccCCCCCEee
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L----KLDTTERRIMET--RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~----~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +...+..+.+..|+.+.|.|...+ .+  .+.+.|++..  .    .+....++....  ......|+|.+++.+|.|.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRD-ASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTY   81 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECS-CSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEeCCccEEEecCCCEEEEEEECC-CcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEE
Confidence            344566788889999999999987 55  5689999852  1    122234554432  23466899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+.+
T Consensus        82 ~C~~~~   87 (113)
T 1sq2_N           82 RCGLGV   87 (113)
T ss_dssp             EEEECB
T ss_pred             EEEEEe
Confidence            999987

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.18  E-value=8e-11  Score=64.47  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             ecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEccc-CCCCCEeeEEEEEcCCCcc-eEEEE
Q psy17205         20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKV-LFTDFGNYSCVAENSMGKT-RQYLE   95 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~-~~~~~g~y~C~~~~~~~~~-~~~~~   95 (106)
                      ..|+.+.|.|.  + .|.|.+.|++++..+....  +......+   .|.|.++ ...|.|.|.|.+.|..|.. ...+.
T Consensus       126 ~~G~~v~L~C~--g-~p~p~i~W~k~~~~l~~~~~~~~~~~~~~---~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~  199 (204)
T 1sy6_A          126 ISGTTVILTCP--Q-YPGSEILWQHNDKNIGGDEDDKNIGSDED---HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY  199 (204)
T ss_dssp             EETTEEEEECS--C-CCSSCEEEEETTEEESCCTTCTTEEEETT---EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEE
T ss_pred             ecCCcEEEEcC--C-CCCCceEEEECCEECCCccCCceEecCCC---EEEEeeCCccccCEEEEEEeccCCCCceeEEEE
Confidence            38999999998  6 7889999999998876531  22222223   7999999 9999999999999998863 34555


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      |.
T Consensus       200 l~  201 (204)
T 1sy6_A          200 LR  201 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.18  E-value=8.9e-10  Score=55.07  Aligned_cols=76  Identities=21%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC------CCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC------RPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIR   69 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p------~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~   69 (106)
                      +...+..+.+..|+.+.|.|...+ .+      .+.+.|++..     ..+.         ...++..........|.|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~-~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   82 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQ-SVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTIS   82 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESS-CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCC-CccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEEC
Confidence            344566788899999999999987 65      3689999853     1111         1245555444556789999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      +++.+|.|.|.|.+.+.
T Consensus        83 ~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           83 SLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             CCCcccCEEEEEEEeeC
Confidence            99999999999999875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.18  E-value=1.8e-10  Score=69.27  Aligned_cols=74  Identities=14%  Similarity=0.001  Sum_probs=56.4

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+....+..|+.+.|.|.+.+ .+.+   .+.|++++..+.......   ......|.|..+...|.|.|.|.+.|..|
T Consensus        91 ~~~~~~~v~~G~~v~L~C~~~g-~~~~~~~~v~W~k~g~~l~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I           91 LAPLPSWQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPAVG---EPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (450)
T ss_dssp             ECCCCSEECTTSEEEEEEEEEC-CBCGGGEEEEEEETTEEEEEEECCT---TTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             ecCCCceEeeCCeEEEEEEecC-CCCCcCcEEEEeeCCEEeecccccc---cccceEEEEEeeccccCceEEEEEEcccC
Confidence            3444466778999999999999 8887   899999997765321110   12234799999999999999999999866


Q ss_pred             c
Q psy17205         89 K   89 (106)
Q Consensus        89 ~   89 (106)
                      .
T Consensus       167 ~  167 (450)
T 1z7z_I          167 P  167 (450)
T ss_dssp             G
T ss_pred             C
Confidence            4

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.17  E-value=2.9e-10  Score=62.19  Aligned_cols=71  Identities=18%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEcC------------CCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKLD------------TTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l~------------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+..|+.+.|.|...+ .+.+.+.|+++.  ..+.            ...++..........|.|.++...|.|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQ-LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETT-GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCC-CCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEE
Confidence            55678889999999999877 777889998742  2210            12455555445567899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+.|
T Consensus        85 ~C~~~n   90 (212)
T 1nfd_E           85 YCLSSY   90 (212)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999996

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.17  E-value=6.9e-10  Score=60.20  Aligned_cols=76  Identities=11%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             ecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCCCEEEEE-c-CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         20 TRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTERRIMET-R-GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        20 ~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~~~~~~~-~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      ..|+.+.|.|.+. + .|.|.+.|++++..+.......... . +......+..+...|.|.|.|.+.|..+.....+.+
T Consensus       119 ~~g~~~~l~C~~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          119 PTSNIRRIICSTSGG-FPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             SSTTEEEEEEEEEEE-SSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             CCCCeEEEEEecCCc-cCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            4578899999995 7 8999999999998776542211111 1 112222334455679999999999998887776654

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.17  E-value=2.1e-10  Score=57.34  Aligned_cols=89  Identities=16%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE--------cC---------CCCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK--------LD---------TTERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~--------l~---------~~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      +..+.+..|+.+.|.|..........+.|++....        +.         ...++.+..  .....+|.|.+++..
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   83 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES   83 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcc
Confidence            34577889999999999765123567999987521        00         011222110  122457999999999


Q ss_pred             CCEeeEEEEEcCCCcc--eEEEEEEEeCCC
Q psy17205         75 DFGNYSCVAENSMGKT--RQYLELSGKYPN  102 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~--~~~~~l~~~~~~  102 (106)
                      |.|.|.|.+.+..+..  ...+.|.+.|..
T Consensus        84 DsG~Y~C~v~~~~~~~~~~~~~~l~V~p~~  113 (116)
T 2or8_A           84 DSGLYCCRVEIPGWFNDQKVTFSLQVKPEL  113 (116)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEEEECSC
T ss_pred             cCEEEEEEEEcCCcccccEEEEEEEECCcc
Confidence            9999999998865443  556666665543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.17  E-value=6.4e-10  Score=68.11  Aligned_cols=74  Identities=22%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEcC------------CCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKLD------------TTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l~------------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+..|+.+.|.|.+.+ .+.+.+.|++++  ..+.            ...++..........|.|.++...|.|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTS-SGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDY   85 (523)
T ss_pred             CCceEEecCCcEEEEEEEec-cCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEE
Confidence            45678889999999999998 889999999864  1110            11344433334456899999999999999


Q ss_pred             EEEEEcCCC
Q psy17205         80 SCVAENSMG   88 (106)
Q Consensus        80 ~C~~~~~~~   88 (106)
                      .|.+.|..|
T Consensus        86 ~C~a~n~~g   94 (523)
T 2rcj_C           86 YCASWNSSD   94 (523)
T ss_pred             EEEEccCCC
Confidence            999998764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.17  E-value=1.1e-10  Score=70.18  Aligned_cols=72  Identities=13%  Similarity=0.021  Sum_probs=57.6

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+.+..|+.+.|.|.+.| .|.|.+.|++++..+.....          .+   .+...|.|.|.|.+.|..|.....+
T Consensus       378 ~~~~~~~g~~~~l~C~~~g-~P~p~i~W~~~g~~~~~~g~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~  443 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWG-NPLPELKCLKDGTFPLPIGE----------SV---TVTRDLEGTYLCRARSTQGEVTREV  443 (450)
T ss_dssp             SEEEEETTCEECCCCCCEE-ESCCEEEEEETTTEECCTTS----------CE---ECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CceeEcCCCeEEEEEeccc-CCCCcEEEEECCcccCCCCC----------eE---eEehhhCeEEEEEEEeCCCceeEEE
Confidence            5667889999999999999 99999999999863332211          11   4677899999999999999988888


Q ss_pred             EEEEeC
Q psy17205         95 ELSGKY  100 (106)
Q Consensus        95 ~l~~~~  100 (106)
                      .|.+..
T Consensus       444 ~l~V~~  449 (450)
T 1z7z_I          444 TVNVLS  449 (450)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            777654

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.16  E-value=4e-11  Score=67.71  Aligned_cols=73  Identities=14%  Similarity=0.016  Sum_probs=57.0

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +....+..|+.+.|.|.+.+ .|.|.+.|++++..+...        +   .+  ..+...|.|.|.|.+.|..|.....
T Consensus       192 p~~~~v~~g~~~~l~C~~~g-~P~p~i~W~~~~~~~~~~--------g---~~--~~v~~~d~G~Y~C~a~N~~G~~~~~  257 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWG-NPLPELKCLKDGTFPLPI--------G---ES--VTVTRDLEGTYLCRARSTQGEVTRE  257 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEE-ESCCEEEEEETTTEECCT--------T---SC--EECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCccEEcCCCeEEEEeECcc-CCCCeEEEEECCcccCCC--------C---cE--EEeehhhCeEEEEEEECCCCcEEEE
Confidence            34567888999999999999 999999999998622221        1   11  1366789999999999999988888


Q ss_pred             EEEEEeC
Q psy17205         94 LELSGKY  100 (106)
Q Consensus        94 ~~l~~~~  100 (106)
                      +.|.+..
T Consensus       258 ~~l~V~~  264 (265)
T 2oz4_A          258 VTVNVLS  264 (265)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8777654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.16  E-value=4.4e-10  Score=60.88  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+..|+.+.|.|.+.+  +.+.+.|++++..+...... ..........|.|.++...|.|.|.|.+.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS--PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE--EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC--CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            4578999999999987  45689999998766543211 111112345799999999999999999999765

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.16  E-value=3.8e-10  Score=66.60  Aligned_cols=88  Identities=14%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             cceeeccCCe-EEeecCCeEEEEEEEeecCCCCeEEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCC------CEe
Q psy17205          7 TLKLDTTERR-IIETRGRRHTLIFFFHFAFCRPQVIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTD------FGN   78 (106)
Q Consensus         7 ~~~~~~~~~~-~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~------~g~   78 (106)
                      +|.|...+.. +.+..|+.+.|.|.+.+ .|.|.+.|++ ++..+....+.....  ....|.|.++...|      .|.
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g-~p~p~v~W~k~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~~~~~d~G~   79 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASG-NPMPEIIWIRSDGTAVGDVPGLRQIS--SDGKLVFPPFRAEDYRQEVHAQV   79 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEE-ESCCEEEEEETTSCBCCCBTTTBEEC--STTEEEECCCCGGGCCHHHHEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCC-CCCCEEEEEcCCCCccccCCCceEEc--CCceEEecccChhhccccccCce
Confidence            4566655543 56778999999999999 8999999999 776665432221211  12269999999887      999


Q ss_pred             eEEEEEcCCCcce-EEEEEE
Q psy17205         79 YSCVAENSMGKTR-QYLELS   97 (106)
Q Consensus        79 y~C~~~~~~~~~~-~~~~l~   97 (106)
                      |.|.+.|..|... ..+.+.
T Consensus        80 Y~C~a~n~~g~~~s~~~~v~   99 (388)
T 2v5m_A           80 YACLARNQFGSIISRDVHVR   99 (388)
T ss_dssp             EEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEccCCeEEecceEEE
Confidence            9999999877532 234444

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.15  E-value=5e-10  Score=60.91  Aligned_cols=81  Identities=15%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC-------------------CCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT-------------------TERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~-------------------~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      ..+..|+.+.|.|...+ .+.+.+.|++++.....                   ..+..+..   ...|.|.++...|.|
T Consensus         9 ~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~i~~v~~~D~G   84 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLP-LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS---NGSLLFQMITMKDMG   84 (208)
T ss_dssp             SEEETTCCEEEEEECCC-SSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT---TSCEEECSCCGGGCE
T ss_pred             ceeecCCcEEEEEeCCC-CCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec---CCeEEEccccccCCe
Confidence            46779999999999877 78889999987532111                   11221111   126999999999999


Q ss_pred             eeEEEEEcCC-CcceEEEEEEEeCC
Q psy17205         78 NYSCVAENSM-GKTRQYLELSGKYP  101 (106)
Q Consensus        78 ~y~C~~~~~~-~~~~~~~~l~~~~~  101 (106)
                      .|.|.+.+.. +.....+.|.+..+
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~  109 (208)
T 3r4d_A           85 VYTLDMTDENYRRTQATVRFHVHQP  109 (208)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEECC
T ss_pred             EEEEEEEcccCceeEEEEEEEeccC
Confidence            9999999874 34444555554433

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.15  E-value=6.6e-10  Score=63.16  Aligned_cols=86  Identities=14%  Similarity=0.114  Sum_probs=61.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEee-CCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE-cC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYK-ETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE-NS   86 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~-~~   86 (106)
                      +........+..|+.+.|.|.+.+ .+.+. +.|++ ++..+....++.....+   .|.|.++...|.|.|.|.+. +.
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~  167 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITD-PALKDSVSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNG  167 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESC-GGGGGSEEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETT
T ss_pred             eecccceEEEecCCceEeEEEccC-CCcceEEEEEecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCC
Confidence            344456678889999999999988 66654 99985 66666665555544433   69999999999999999999 43


Q ss_pred             CCcceEEEEEEEe
Q psy17205         87 MGKTRQYLELSGK   99 (106)
Q Consensus        87 ~~~~~~~~~l~~~   99 (106)
                      .+.....+.|.+.
T Consensus       168 ~~~~~~~~~l~V~  180 (289)
T 3ejj_X          168 RESTSTGIWLKVN  180 (289)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CccccccEEEEEE
Confidence            3333344455543

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=99.15  E-value=1e-09  Score=54.80  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~   70 (106)
                      +...+..+.+..|+++.|.|...+ .+     .+.+.|++..     ..+.         ...++..........|.|.+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~   82 (113)
T 1dlf_L            4 MTQTPLSLPVSLGNQASISCRSSQ-SLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECS
T ss_pred             EEEeCCEEEEcCCCCEEEEEEccc-cccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECC
Confidence            344556688889999999999987 55     4789998743     1111         12355554445567899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      ++.+|.|.|.|.+.+.
T Consensus        83 v~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           83 VEAEDLGVYFCSQSTH   98 (113)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CChHHCEEEEEEEecC
Confidence            9999999999999875

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.15  E-value=1.2e-10  Score=64.43  Aligned_cols=78  Identities=8%  Similarity=-0.142  Sum_probs=54.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEE--EEEEcccCCCCCEeeEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRH--TLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~--~l~~~~~~~~~~g~y~C~~~   84 (106)
                      +|.+...+. ..+..|++++|.|.+.+  +.+.+.|++++..+....+. ........  .|.|.++...|.|.|.|.+.
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~--~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR--EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT--TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC--CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            455655554 46779999999999876  57899999987544321111 00011233  79999999999999999999


Q ss_pred             cCCC
Q psy17205         85 NSMG   88 (106)
Q Consensus        85 ~~~~   88 (106)
                      |..+
T Consensus        85 n~~~   88 (218)
T 1uct_A           85 IGHY   88 (218)
T ss_dssp             ETTT
T ss_pred             cCCC
Confidence            9754

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.15  E-value=4.4e-11  Score=64.62  Aligned_cols=78  Identities=18%  Similarity=0.170  Sum_probs=56.7

Q ss_pred             cCCeEEeecCCeEEEEEE-EeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         13 TERRIIETRGRRHTLIFF-FHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~-~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ....+.+..|+.+.|.|. ..+ .|. +.+.|++++..+................|.|.++...|.|.|.|.+.+..+..
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~-~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYH-FPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSE-ESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCceEEEECCCCEEEecccccc-CCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            345678889999999999 777 788 99999999866542211111111223469999999999999999999865443


Q ss_pred             e
Q psy17205         91 R   91 (106)
Q Consensus        91 ~   91 (106)
                      .
T Consensus        93 ~   93 (201)
T 3s97_C           93 S   93 (201)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=1.8e-09  Score=58.23  Aligned_cols=77  Identities=10%  Similarity=0.009  Sum_probs=53.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.+...+.. .+..|++++|.|.+.+  +.+.+.|++++..+...... .........|.|.++...|.|.|.|.+.+..
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNY--GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT--TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCC--CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            455554544 6789999999999866  45789999998765311000 0001234579999999999999999998754


Q ss_pred             C
Q psy17205         88 G   88 (106)
Q Consensus        88 ~   88 (106)
                      +
T Consensus        81 ~   81 (188)
T 1oll_A           81 L   81 (188)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.15  E-value=4e-09  Score=52.00  Aligned_cols=77  Identities=17%  Similarity=0.268  Sum_probs=55.5

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCC----EEcCCCCC-EEEEE---cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKET----LKLDTTER-RIMET---RGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~----~~l~~~~~-~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ...+..|+.+.|.|++.+..+.|.+.|.+-+    ..|..... .....   +.....|.+..+...|.|.|.|.+.+..
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~  102 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS  102 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCC
Confidence            3667889999999999772479999998855    33332211 11111   1235579999999999999999999977


Q ss_pred             CcceE
Q psy17205         88 GKTRQ   92 (106)
Q Consensus        88 ~~~~~   92 (106)
                      |...+
T Consensus       103 g~ieS  107 (122)
T 1xau_A          103 QVINS  107 (122)
T ss_dssp             EEEEC
T ss_pred             Cceee
Confidence            66554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.15  E-value=4.5e-10  Score=62.07  Aligned_cols=65  Identities=12%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..+..|+.+.|.|...+ .+.+.+.|++++..+...  .  ........|.|.++...|.|.|.|.+.+.
T Consensus       115 ~~v~~G~~v~L~C~~~~-~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          115 LVLMPGENISLTCSSAH-IPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             SEECTTCCCEEEEECSS-SCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCCEEEEEeCCC-CCCCEEEEEECCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcC
Confidence            45678999999997666 678899999998766542  1  12233457999999999999999999975

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.15  E-value=9.1e-10  Score=61.56  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC--E--E-cC---------CCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET--L--K-LD---------TTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~--~--~-l~---------~~~~~~~~~~~~~~~l~~~~   70 (106)
                      +...+..+.+..|+.+.|.|...+ .+     .+.+.|++..  .  . +.         ...++..........|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQ-TIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEecCCeEEecCCCCEEEEEeCCC-cccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            344566788899999999999988 77     6899999842  1  1 10         12455555445566899999


Q ss_pred             cCCCCCEeeEEEEEcCCC
Q psy17205         71 VLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~~   88 (106)
                      +...|.|.|.|.+.+..+
T Consensus        83 v~~~D~G~Y~C~~~n~~~  100 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFP  100 (247)
T ss_dssp             CCGGGCEEEEEEECSSSS
T ss_pred             CCHHHCEEEEEEEccCCc
Confidence            999999999999998744

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=4.6e-10  Score=60.56  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=49.6

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..+..|+.+.|.|.+.+  +.+.+.|++++..+...    .........|.|.++...|.|.|.|.+.|..
T Consensus       108 ~~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~----~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          108 PEVISGEKVTFYCRLDT--ATSMFLLLKEGRSSHVQ----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEETTCEEEEEEECSS--SCSEEEEEEESSSCEEE----EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CccccCCEEEEEEEcCC--CCCEEEEEECCcccccc----ccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            34678999999999866  56789999988654331    1122345679999999999999999998753

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.14  E-value=6.8e-10  Score=64.77  Aligned_cols=79  Identities=20%  Similarity=0.291  Sum_probs=59.8

Q ss_pred             eEEeecCCeEEEEEEE-----eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC-Cc
Q psy17205         16 RIIETRGRRHTLIFFF-----HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM-GK   89 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~-----~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~~   89 (106)
                      ...+..|+.+.|.|..     .+ .|.+.+.|++++..+....++....    ..|.|.++...|.|.|.|.+.|.. |.
T Consensus       129 ~~~~~~g~~~~l~C~~~~~~~~g-~p~~~v~W~k~~~~l~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~n~~~g~  203 (349)
T 4dep_C          129 HKLYIEYGIQRITCPNVDGYFPS-SVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALISNNGNYTCVVTYPENGR  203 (349)
T ss_dssp             EEEETTCSEEEEECCSCTTSSCT-TSCCEEEEEETTEECCSCSSEEEET----TEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred             ceeeecCccEEEEcCCCcccccC-CCCceEEEeeCCEECCCccceeecC----CEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence            4566789999999985     56 7899999999999886643333222    269999999999999999999976 44


Q ss_pred             c---eEEEEEEEe
Q psy17205         90 T---RQYLELSGK   99 (106)
Q Consensus        90 ~---~~~~~l~~~   99 (106)
                      .   ...+.|.+.
T Consensus       204 ~~~~~~~~~l~v~  216 (349)
T 4dep_C          204 TFHLTRTLTVKVV  216 (349)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEE
Confidence            3   345555543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.14  E-value=2.6e-10  Score=56.35  Aligned_cols=73  Identities=14%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+.. .+..|++++|.|...+ . ...+.|++++..+...   ..........|.|..+...|.|.|.|.+.+.
T Consensus         6 P~i~~~p~~-~v~~G~~VtL~C~~~~-~-~~~~~w~k~g~~~~~~---~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A            6 PSLSLHPSQ-GVSLGDTVTLRCHLPR-M-AAWVQLWLNGTLRFDK---EKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             CEEEEESCS-SCCTTCEEEEEEECCS-S-CEEEEEEETTEEEEEE---EECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CEEEeCCCC-CcCcCCCEEEEEEcCC-C-CcEEEEEECCccceee---eccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            455544444 5778999999999877 4 4678899998654321   0111234557999999999999999999875

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.13  E-value=8e-10  Score=59.93  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=59.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC---CC---------------CCEEEEEcCcEEEEEEcccCCC
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD---TT---------------ERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~---~~---------------~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+..+.+..|+++.|.|...+..+.+.+.|++++..+.   ..               .++.+.   ...+|.|.++...
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~   80 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME   80 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence            45567888999999999987513457899999875431   10               122222   1346999999999


Q ss_pred             CCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         75 DFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      |.|.|.|.+.+..+.....+.|.+.
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~  105 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRIL  105 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEE
Confidence            9999999999987765555555543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.13  E-value=1.9e-09  Score=59.26  Aligned_cols=73  Identities=14%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEcC-----------------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKLD-----------------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l~-----------------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|+.+.|.|.+.+ .+  .+.+.|+++.  ..+.                 ...++.+...  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASG-YMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEEeC-cccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            33467889999999999987 65  6899999862  2110                 1234544432  2356899999


Q ss_pred             cCCCCCEeeEEEEEcCC
Q psy17205         71 VLFTDFGNYSCVAENSM   87 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~   87 (106)
                      +...|.|.|.|.+.+..
T Consensus        86 v~~~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTI  102 (219)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             CCcccCEEEEEEEeccC
Confidence            99999999999999875

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.13  E-value=1.9e-09  Score=61.06  Aligned_cols=80  Identities=20%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC------CCeEEEeeCC--EE---cC---------CCCCEEEEEcCcEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC------RPQVIWYKET--LK---LD---------TTERRIMETRGRRHTLV   67 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p------~p~~~w~~~~--~~---l~---------~~~~~~~~~~~~~~~l~   67 (106)
                      +.+...+..+.+..|+.+.|.|...+ .+      .+.+.|++..  ..   +.         ...++..........|.
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~-~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQ-TLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESS-CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCC-cccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            44556677788899999999999988 76      6789999842  11   10         13456555445567899


Q ss_pred             EcccCCCCCEeeEEEEEcCCC
Q psy17205         68 IRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      |.++...|.|.|.|.+.+..+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~  105 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYP  105 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSS
T ss_pred             ECCCCHHHCEEEEEEEecCCc
Confidence            999999999999999988643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.13  E-value=4.1e-10  Score=62.11  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             eeeccCCeEEeecCCeE-EEEEEE-eecCCCCeEEEeeCCEEcCCCC----CEEEEEcC---------cEEEEEEcccCC
Q psy17205          9 KLDTTERRIIETRGRRH-TLIFFF-HFAFCRPQVIWYKETLKLDTTE----RRIMETRG---------RRHTLVIRKVLF   73 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~-~~~c~~-~~~~p~p~~~w~~~~~~l~~~~----~~~~~~~~---------~~~~l~~~~~~~   73 (106)
                      .+......+.+..|+.+ .|.|.+ .+ .|.|.+.|++++..+....    +..+....         ....|.+.....
T Consensus       120 ~~~~~~~~~~~~~g~~~~~l~C~~~~~-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~  198 (231)
T 2pet_A          120 EVSPNKGTLSVMEDSAQEIATCNSRNG-NPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD  198 (231)
T ss_dssp             EEEECCSSCCTTCCSEEEEEEEEEEEE-BSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGG
T ss_pred             EEecCCcceeecCCCceEEEEEEeECc-ccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchh
Confidence            34444444555678877 999999 77 8999999999998887654    43332210         013577764444


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.|.
T Consensus       199 dd~g~Y~C~a~n~  211 (231)
T 2pet_A          199 DRDASFHCAAHYS  211 (231)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             hCCceEEEEEEcC
Confidence            5699999999994

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.13  E-value=8.1e-10  Score=60.13  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=53.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+...+. ..+..|+++.|.|.+.+  +.+.+.|++++..+...... ..........|.|.++...|.|.|.|.+.+
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDV--MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS--CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccC--CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            345554444 56779999999999865  67899999988654321100 001112245799999999999999999976


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        85 ~   85 (201)
T 1nkr_A           85 T   85 (201)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.13  E-value=1.2e-09  Score=62.81  Aligned_cols=70  Identities=21%  Similarity=0.313  Sum_probs=55.8

Q ss_pred             EEeecCCeEEEEEEE------eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE-cCCCc
Q psy17205         17 IIETRGRRHTLIFFF------HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE-NSMGK   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~------~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~-~~~~~   89 (106)
                      ..+..|+.+.|.|..      .+ .|.+.+.|++++..+............   .|.|.++...|.|.|.|.+. |..|.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g-~p~~~i~W~k~~~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~n~~g~  188 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNEN-NELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK  188 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTT-TCCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             eEEecCCCeEEEEecccccccCC-CCCCEEEEEECCEECCCccceEeecCc---eEEEEeceehhCcEEEEEEEcCCCCc
Confidence            557789999999998      67 889999999999888654322222222   79999999999999999999 67776


Q ss_pred             c
Q psy17205         90 T   90 (106)
Q Consensus        90 ~   90 (106)
                      .
T Consensus       189 ~  189 (315)
T 1itb_B          189 Q  189 (315)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.13  E-value=7e-11  Score=64.09  Aligned_cols=69  Identities=12%  Similarity=-0.040  Sum_probs=43.0

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEE-EcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IME-TRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..+..|+.+.|.|.+.+ .| +.+.|++++..+...... ... .......|.|.++...|.|.|.|.+.|..
T Consensus       109 ~~v~~G~~v~L~C~~~~-~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRL-RF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             --------CEEEEEESS-CC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             ccccCCCcEEEEEEcCC-CC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            45678999999999998 77 899999998766432110 000 01223579999999999999999999864

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.13  E-value=8.6e-10  Score=55.65  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=55.7

Q ss_pred             CCeEEeecCCeEEEEEEEeec---CCCCeEEEeeCCE-------EcC-------------CCCCEEEEEc--CcEEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFA---FCRPQVIWYKETL-------KLD-------------TTERRIMETR--GRRHTLVI   68 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~---~p~p~~~w~~~~~-------~l~-------------~~~~~~~~~~--~~~~~l~~   68 (106)
                      +..+.+..|+++.|.|.....   ...+.+.|++.+.       .+.             ...++.+...  ....+|.|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEE
Confidence            446778899999999998651   2467899987532       000             0123332211  22457999


Q ss_pred             cccCCCCCEeeEEEEEcCCCc--ceEEEEEEEeCCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMGK--TRQYLELSGKYPNA  103 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~~--~~~~~~l~~~~~~~  103 (106)
                      .+++..|.|.|.|.+.+..+.  ....+.|.+...++
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             ccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence            999999999999999987654  34566666655543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.12  E-value=3.6e-10  Score=63.70  Aligned_cols=84  Identities=14%  Similarity=0.131  Sum_probs=59.0

Q ss_pred             CCeEEeecCCeEEEEEEE---eecCCCCeEEEeeCCE-EcCCC---------------------CCEEEEE--cCcEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFF---HFAFCRPQVIWYKETL-KLDTT---------------------ERRIMET--RGRRHTL   66 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~---~~~~p~p~~~w~~~~~-~l~~~---------------------~~~~~~~--~~~~~~l   66 (106)
                      +....+..|+.+.|.|.+   .+ .|.+.+.|++++. .+...                     .+..+..  ......|
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L  203 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEE-KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI  203 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSS-SCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCE
T ss_pred             CCccccccCCcEEEEEEecCCCC-CCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEE
Confidence            445778899999999999   45 6889999998421 11100                     0111100  0124479


Q ss_pred             EEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         67 VIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      .|.++...|.|.|.|.+.|..+.....+.|.+
T Consensus       204 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence            99999999999999999998887777777765

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.12  E-value=2e-09  Score=53.41  Aligned_cols=72  Identities=13%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCE--E---cC--------CCCCEEEEE--cCcEEEEEEcccCCCCCEe
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETL--K---LD--------TTERRIMET--RGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~--~---l~--------~~~~~~~~~--~~~~~~l~~~~~~~~~~g~   78 (106)
                      ..+.+..|+++.|.|.... .. ...+.|++...  .   +.        ...++.+..  ......|+|.++..+|.|.
T Consensus         4 ~~v~~~~G~~v~L~C~~~~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~   82 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEK-EHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGT   82 (110)
T ss_dssp             EEEEECTTSCEEEEEECCG-GGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             cEEEEeCCCcEEEEeEecC-CcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEE
Confidence            4567889999999999876 43 36899998541  1   10        113444432  2345689999999999999


Q ss_pred             eEEEEEcCC
Q psy17205         79 YSCVAENSM   87 (106)
Q Consensus        79 y~C~~~~~~   87 (106)
                      |.|.+.+..
T Consensus        83 Y~C~~~~~~   91 (110)
T 2q87_A           83 YWCGVDTPW   91 (110)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCc
Confidence            999999875

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.12  E-value=1.6e-09  Score=63.29  Aligned_cols=72  Identities=11%  Similarity=0.151  Sum_probs=53.3

Q ss_pred             CeEEeecCCeEEEEEEEeecC--CCCeEEEeeC--CEEc-----------------CCCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAF--CRPQVIWYKE--TLKL-----------------DTTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~--~~~l-----------------~~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+.+.|.|...+ .  +.+.+.|+++  +..+                 ....++.+...  .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASG-YTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCcEEEEEEcCC-ccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            3467889999999999988 6  3678999986  2211                 01235554432  34568999999


Q ss_pred             CCCCCEeeEEEEEcCC
Q psy17205         72 LFTDFGNYSCVAENSM   87 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~   87 (106)
                      ...|.|.|.|.+.+..
T Consensus        87 ~~~D~G~Y~C~~~n~~  102 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNM  102 (344)
T ss_dssp             CGGGCEEEEEEETTTT
T ss_pred             CcccCEEEEEEEecCc
Confidence            9999999999999854

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.12  E-value=4.2e-10  Score=63.10  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             eEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ...+..|+.+.|.|.+ .+ .|.+.+.|++++..+...        .....|.+.++...|.|.|.|.+.|..+.....+
T Consensus        91 ~~~~~~g~~v~l~C~~~~~-~p~~~v~W~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  161 (262)
T 3rjd_A           91 SRVFTEGEPLALRCHAWKD-KLVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI  161 (262)
T ss_dssp             CSEEETTSCEEEEEEEGGG-CCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECE
T ss_pred             CeEEecCCeEEEEEEccCC-CCCceEEEEECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccce
Confidence            3456789999999999 55 788899999998765321        1123689999999999999999999876666655


Q ss_pred             EEEEeC
Q psy17205         95 ELSGKY  100 (106)
Q Consensus        95 ~l~~~~  100 (106)
                      .+.+..
T Consensus       162 ~l~V~~  167 (262)
T 3rjd_A          162 SVTVKE  167 (262)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            565443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.12  E-value=1.3e-09  Score=59.16  Aligned_cols=77  Identities=16%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+...+. ..+..|+.+.|.|.+.+ .+. .+.|++++..+........ .......|.|.++...|.|.|.|.+.|.
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQ-ETQ-EYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCT-TCC-CEEEEESSSCCHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecC-CCc-EEEEEECCccccccccccc-cCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            345554444 36779999999999988 665 6999999876531100000 0011236999999999999999999987


Q ss_pred             C
Q psy17205         87 M   87 (106)
Q Consensus        87 ~   87 (106)
                      .
T Consensus        81 ~   81 (198)
T 1ugn_A           81 T   81 (198)
T ss_dssp             T
T ss_pred             C
Confidence            6

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.12  E-value=2e-10  Score=61.99  Aligned_cols=69  Identities=22%  Similarity=0.291  Sum_probs=53.5

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcc-cCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK-VLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .....|+.+.|.|.+.+ . . .+.|++++..+....         ...|.|.+ +...|.|.|.|.+.|..|.....+.
T Consensus         9 ~v~~~G~~v~L~C~~~~-~-~-~i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   76 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-D-E-NLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK   76 (186)
T ss_dssp             EEEEETTEEEEECSSCC-C-T-TCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred             EEEeCCcEEEEEEeCCC-C-C-ceEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence            34468999999999876 3 3 399999998877631         12699999 9999999999999998887555544


Q ss_pred             EE
Q psy17205         96 LS   97 (106)
Q Consensus        96 l~   97 (106)
                      +.
T Consensus        77 ~~   78 (186)
T 1jbj_A           77 AR   78 (186)
T ss_dssp             CC
T ss_pred             EE
Confidence            43

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.11  E-value=7.8e-10  Score=54.86  Aligned_cols=72  Identities=17%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCeEEeecCCeEEEEEE-EeecCC-CCeEEEeeCCEEc---C---------CCCCEEEE--EcCcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFF-FHFAFC-RPQVIWYKETLKL---D---------TTERRIME--TRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~-~~~~~p-~p~~~w~~~~~~l---~---------~~~~~~~~--~~~~~~~l~~~~~~~~~~g   77 (106)
                      +..+.+..|+++.|.|. ..+ .+ .+.+.|++....+   .         ...++...  .......|+|.+++..|.|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~-~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG   85 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSG-NIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEA   85 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSS-CGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCEEEcCCCCEEEEEEeCCC-CCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCE
Confidence            56678889999999999 766 54 4789999875211   0         12355544  2344678999999999999


Q ss_pred             eeEEEEEcC
Q psy17205         78 NYSCVAENS   86 (106)
Q Consensus        78 ~y~C~~~~~   86 (106)
                      .|.|.+.+.
T Consensus        86 ~Y~C~~~~~   94 (109)
T 1pew_A           86 DYYCQSYDA   94 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEeC
Confidence            999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.11  E-value=1.2e-09  Score=68.30  Aligned_cols=67  Identities=19%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +....+..|+.+.|.|.+.+ .|.+.+.|++++..+...           ..|.|.++...|.|.|.|.+.|..|....
T Consensus       388 ~~~~~~~~g~~~~l~C~~~g-~p~~~i~W~~~g~~~~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  454 (642)
T 1e07_A          388 PSYTYYRPGVNLSLSCHAAS-NPPAQYSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSR  454 (642)
T ss_pred             CCceEecCCCcEEEEEEcCc-cCCCeEEEEECCEEcCCC-----------ceEEEccCChhhCeEEEEEEEcCCCCCcc
Confidence            33456778999999999999 999999999999876543           15889999999999999999998876543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.11  E-value=7.6e-10  Score=67.78  Aligned_cols=87  Identities=11%  Similarity=0.189  Sum_probs=59.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEE---EEcCc---EEEEEEcccCCCCCEee
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIM---ETRGR---RHTLVIRKVLFTDFGNY   79 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~---~~~~~---~~~l~~~~~~~~~~g~y   79 (106)
                      |.+...+.......|+.+.|.|.+.+ .+.+  .+.|++++..+........   ...+.   ...|.|..+...|.|.|
T Consensus       115 P~~~~~~~~~~~~~g~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  193 (523)
T 2rcj_C          115 PTVTLFPPSSEELQANKATLVCLISD-FYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSY  193 (523)
T ss_pred             CeEEecCCcccccCCCceEEEEEecc-ccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceE
Confidence            34433344444567899999999998 7654  8999999887764322110   01111   23689999999999999


Q ss_pred             EEEEEcCCCcceEEEE
Q psy17205         80 SCVAENSMGKTRQYLE   95 (106)
Q Consensus        80 ~C~~~~~~~~~~~~~~   95 (106)
                      .|.+.|..+.....+.
T Consensus       194 ~C~a~n~~~~~~~~~~  209 (523)
T 2rcj_C          194 SCQVTHEGSTVEKTVA  209 (523)
T ss_pred             EEEEEecCccccccee
Confidence            9999998776544443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.11  E-value=4.9e-10  Score=63.78  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=55.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC-cEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG-RRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      +......+.+..|+.+.|.|.+.+ .    +.|++++..+..  +......+ ....|.|.++...|.|.|.|.+.|..|
T Consensus         3 i~~~~~~~~v~~G~~v~L~C~~~~-~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            3 VTPPGPELVLNVSSTFVLTCSGSA-P----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             BCSSCSEEECCTTCCEEEEEEESS-C----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             ecCCCCeEEEeCCCcEEEEEeccc-e----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            444455678889999999999877 4    899999876632  11111111 135799999999999999999999876


Q ss_pred             c---ceEEEEEEEe
Q psy17205         89 K---TRQYLELSGK   99 (106)
Q Consensus        89 ~---~~~~~~l~~~   99 (106)
                      .   ....+.+.+.
T Consensus        76 ~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           76 LETDERKRLYIFVP   89 (289)
T ss_dssp             ---CCCEEEEEECC
T ss_pred             CCcCcEEeEEEEEE
Confidence            5   3345555543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.11  E-value=1.7e-09  Score=59.32  Aligned_cols=75  Identities=19%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC--EEc------------CCCCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET--LKL------------DTTERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~--~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      +..+.+..|+.+.|.|.+.++.+ .+.+.|++++  ..+            ....++..........|.|.++...|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            45678889999999999544132 5789999843  111            01235555544556789999999999999


Q ss_pred             eEEEEEcCCC
Q psy17205         79 YSCVAENSMG   88 (106)
Q Consensus        79 y~C~~~~~~~   88 (106)
                      |.|.+.+..+
T Consensus        87 Y~C~~~~~~~   96 (216)
T 2xzc_L           87 YYCGTWDSSL   96 (216)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.11  E-value=1.5e-09  Score=61.11  Aligned_cols=79  Identities=16%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec----------CCCCCEEEE--EcCcEEEEEEccc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL----------DTTERRIME--TRGRRHTLVIRKV   71 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l----------~~~~~~~~~--~~~~~~~l~~~~~   71 (106)
                      .+...+..+.+..|+.+.|.|...+ .+.+.+.|++..  .   .+          ....++...  .......|.|.++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSY-SATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCC-CCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            4556677788999999999999999 899999999732  1   00          011233332  2234667999999


Q ss_pred             CCCCCEeeEEEEEcCCC
Q psy17205         72 LFTDFGNYSCVAENSMG   88 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~   88 (106)
                      ...|.|.|.|.+.+..+
T Consensus        84 ~~~DsG~Y~C~~~~~~~  100 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGT  100 (256)
T ss_dssp             CGGGCSEEEEEEECTTC
T ss_pred             CcccCEEEEEEEecCCC
Confidence            99999999999998654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.10  E-value=1.4e-10  Score=63.39  Aligned_cols=73  Identities=11%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             cCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCCCE--EEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         21 RGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTERR--IMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~~--~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      .|+.+.|.|.+.+ . |. +.+.|++++..+......  .....+   ....|.+..+...|.|.|.|.+.|..+.....
T Consensus       128 ~g~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  206 (213)
T 3mj8_L          128 KTNQATLVCMING-FYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS  206 (213)
T ss_dssp             TTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEeec-eeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence            6999999999988 5 44 399999999887653100  000111   12358899998899999999999987655544


Q ss_pred             E
Q psy17205         94 L   94 (106)
Q Consensus        94 ~   94 (106)
                      +
T Consensus       207 ~  207 (213)
T 3mj8_L          207 L  207 (213)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.10  E-value=2e-09  Score=66.48  Aligned_cols=82  Identities=13%  Similarity=0.094  Sum_probs=61.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .+.+.+|+.+.|.|...+ .+...+.|++++..+.....+.... ....+|.|.++...|.|.|.|.+.|..+.....+.
T Consensus        57 ~~~v~~g~~~~L~c~~~~-~~~~~~~W~~~~~~l~~~~~~~~~~-r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~  134 (527)
T 3qs9_E           57 AVEVDVSASITLQVLVDA-PGNISCLWVFKHSSLNCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT  134 (527)
T ss_dssp             EEEECSSCCEEEEEECSC-CSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEE
T ss_pred             eEEEeccccEEEEEEEec-CCceeEEEEecCCccCcccccCCCc-ceEEEEEECcCChhhCeeEEEEEEeccccEEEEEE
Confidence            688899999999999998 7888999999988776544443332 23456999999999999999999998877666665


Q ss_pred             EEEe
Q psy17205         96 LSGK   99 (106)
Q Consensus        96 l~~~   99 (106)
                      +.+.
T Consensus       135 v~v~  138 (527)
T 3qs9_E          135 VSIR  138 (527)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5543

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.10  E-value=4.6e-09  Score=54.66  Aligned_cols=76  Identities=22%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|++++|.|.... .....+.|++..     ..+.         ...|+..........|+|.+++.+|
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~D   81 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQ-SVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPED   81 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             EEECCCEEEEeCCCCEEEEEEECC-CCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccC
Confidence            445566788889999999999988 667789999742     1111         1245655544567789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .|.|.|.+.+.
T Consensus        82 sG~Y~C~~~~~   92 (143)
T 3u6r_L           82 FAVYYCQQRSD   92 (143)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEEecC
Confidence            99999998864

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.10  E-value=3.6e-09  Score=58.02  Aligned_cols=87  Identities=18%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCCEEc---------CC------CCCEEEEEc---CcEEEEEEc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKETLKL---------DT------TERRIMETR---GRRHTLVIR   69 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~~~l---------~~------~~~~~~~~~---~~~~~l~~~   69 (106)
                      ....+.+..|+.+.|.|...+ .|     .+.+.|++++..+         ..      ..+..+...   .....|.|.
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~-~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPV-EKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCC-CSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEecC-CCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            445677889999999999876 55     3489999975221         10      122222211   234589999


Q ss_pred             ccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         70 KVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      ++...|.|.|.|.+.+ .+.....+.|.+..+
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~  116 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAP  116 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBC
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECC
Confidence            9999999999999998 455555566665443

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.09  E-value=5.4e-10  Score=55.49  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=48.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC-----eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-----QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-----~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      |.+...+.. .+..|+.++|.|...+ .+..     .+.|++++..+..        ......|.|..+...|.|.|.|.
T Consensus         9 P~l~~~p~~-~v~~G~~VtL~C~~~~-~~~~~~~~~~~~w~k~g~~l~~--------~~~~~~l~i~~v~~~dsG~Y~C~   78 (108)
T 4hwn_A            9 PILRAVPSA-EPQAGSPMTLSCQTKL-PLQRSAARLLFSFYKDGRIVQS--------RGLSSEFQIPTASEDHSGSYWCE   78 (108)
T ss_dssp             CEEEEESCS-SCBTTCCEEEEEEC----------CCEEEEEETTEEEEE--------EESCCEEEESSCCGGGCEEEEEE
T ss_pred             CEEEecCCC-cCCCCCcEEEEEcccC-CCCCcCcceEEEEEECCcCccC--------CCcccEEEeCccCcccCeEEEEE
Confidence            444444432 3668999999999876 4443     4899999876542        01233699999999999999999


Q ss_pred             EEcCCC
Q psy17205         83 AENSMG   88 (106)
Q Consensus        83 ~~~~~~   88 (106)
                      +.+..+
T Consensus        79 ~~~~~~   84 (108)
T 4hwn_A           79 AATEDN   84 (108)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            998654

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.09  E-value=3.2e-10  Score=60.97  Aligned_cols=66  Identities=21%  Similarity=0.117  Sum_probs=49.8

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.|.|.+.+ . .+.+.|++++..+.......    .....|.|.++...|.|.|.|.+.|..+
T Consensus       103 ~~v~~G~~v~l~C~~~~-~-~~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          103 PAVSSGGDVTLQCQTRY-G-FDQFALYKEGDPAPYKNPER----WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CSSCCTTCEEEEEECSS-C-CCEEEEEECCCCTTSCCCCE----EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             ceecCCCcEEEEEEcCC-C-CcEEEEEECCCcCcceecCC----CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            34567999999999866 4 46899999987766532211    1123588999999999999999999743

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.09  E-value=6.3e-10  Score=59.39  Aligned_cols=80  Identities=16%  Similarity=0.064  Sum_probs=56.8

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC------------CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT------------TERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~------------~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      .+.+..|+.+.|.|.. . .+.+.+.|++++..+..            ..+..+.  ....+|.|.++...|.|.|.|.+
T Consensus         4 ~v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~   79 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMES   79 (171)
T ss_dssp             EEEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEEC--TTTCCEEECSCCGGGCEEEEEEC
T ss_pred             EEEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEe--CCCCeEEECCCChhhCceEEEEE
Confidence            4667899999999988 5 47889999998754321            1122221  12237999999999999999999


Q ss_pred             EcCCCcceEEEEEEEeCC
Q psy17205         84 ENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        84 ~~~~~~~~~~~~l~~~~~  101 (106)
                      .+..+  ...+.|.+..+
T Consensus        80 ~n~~~--~~~~~L~V~~~   95 (171)
T 1ccz_A           80 PNITD--TMKFFLYVLEM   95 (171)
T ss_dssp             TTCCS--CEEEEEEEECC
T ss_pred             eCCCC--cEEEEEEEECc
Confidence            98877  45555554443

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=8e-09  Score=53.09  Aligned_cols=78  Identities=15%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCE----EcC--CC---CCEEEE-----EcCcEEEEEEcccCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETL----KLD--TT---ERRIME-----TRGRRHTLVIRKVLF   73 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~----~l~--~~---~~~~~~-----~~~~~~~l~~~~~~~   73 (106)
                      .+...+..+.+..|+++.|.|...+ . +.+.+.|++.+.    .+.  ..   .++...     .......|.|.+++.
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   88 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTS-LIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITP   88 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESC-CCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCT
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcC-CCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCH
Confidence            4455566788999999999999987 5 567899999751    111  00   111110     001245799999999


Q ss_pred             CCCEeeEEEEEcCC
Q psy17205         74 TDFGNYSCVAENSM   87 (106)
Q Consensus        74 ~~~g~y~C~~~~~~   87 (106)
                      .|.|.|.|.+.+..
T Consensus        89 ~DsG~Y~C~~~~~~  102 (136)
T 2d9c_A           89 ADAGTYYCVKFRKG  102 (136)
T ss_dssp             TTCEEEEEEEEECC
T ss_pred             HHCEEEEEEEEeCC
Confidence            99999999998753

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.09  E-value=1.2e-09  Score=64.14  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=60.8

Q ss_pred             CeEEeecCCeEEEEEEEeec----CCCCeEEEeeCCEEcCC--------CCCEEEEE----------cCcEEEEEEcccC
Q psy17205         15 RRIIETRGRRHTLIFFFHFA----FCRPQVIWYKETLKLDT--------TERRIMET----------RGRRHTLVIRKVL   72 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~----~p~p~~~w~~~~~~l~~--------~~~~~~~~----------~~~~~~l~~~~~~   72 (106)
                      ..+.+..|+.+.|.|.+.+.    .|.|.+.|++++..+..        ..++....          ......|.|.++.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            34567789999999988661    34678999999877655        33333322          1123479999999


Q ss_pred             CCCCEeeEEEEEcC--CCcceEEEEEE
Q psy17205         73 FTDFGNYSCVAENS--MGKTRQYLELS   97 (106)
Q Consensus        73 ~~~~g~y~C~~~~~--~~~~~~~~~l~   97 (106)
                      ..|.|.|.|.+.|.  .|.....+.|.
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~  290 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLV  290 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEE
Confidence            99999999999999  88776655554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.09  E-value=4.5e-09  Score=58.15  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=53.6

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c--------------CCCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L--------------DTTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l--------------~~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+.+.|.|...+ .+  .+.+.|++..  ..   +              ....++.+...  .....|.|.++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSN-FRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CEEEETTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeEecCCCCEEEEEEecC-cccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            467889999999999987 66  6889999752  11   1              01235555442  345689999999


Q ss_pred             CCCCEeeEEEEEcCCC
Q psy17205         73 FTDFGNYSCVAENSMG   88 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~   88 (106)
                      ..|.|.|.|.+.+..+
T Consensus        88 ~~D~G~Y~C~~~~~~~  103 (225)
T 1op3_H           88 VEDTAIYYCARKGSDR  103 (225)
T ss_dssp             GGGCEEEEEEEECCSS
T ss_pred             hhhCEEEEEEEecCCC
Confidence            9999999999998753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.08  E-value=2.6e-09  Score=63.99  Aligned_cols=79  Identities=19%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCC----CeEEEeeCC--EEc------------CCCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCR----PQVIWYKET--LKL------------DTTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~--~~l------------~~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|.+.+ .+.    +.+.|++++  ..+            ....++..........|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASE-SVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPV   82 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESS-CCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCC-CcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCC
Confidence            444566788899999999999887 665    489999863  211            1124555554555678999999


Q ss_pred             CCCCCEeeEEEEEcCCCc
Q psy17205         72 LFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~~   89 (106)
                      ...|.|.|.|.+.+..+.
T Consensus        83 ~~~D~G~Y~C~a~n~~~~  100 (438)
T 1qgc_4           83 EADDVATYYCQQSNEVPL  100 (438)
T ss_dssp             CGGGCEEEEEEECSSTTC
T ss_pred             cCcCCeeEEEEEecCCCc
Confidence            999999999999997653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.08  E-value=1.3e-09  Score=60.54  Aligned_cols=77  Identities=13%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c------------CCCCCEEEEE-cCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L------------DTTERRIMET-RGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l------------~~~~~~~~~~-~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|. .+ .+.+.+.|+++.  ..   +            ....++.+.. ......|.|.++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~-~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-EC-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             ceECccceEEeCCCEEEEEee-cC-CCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            344566788899999999999 67 788999999851  10   0            1122444332 223457999999


Q ss_pred             CCCCCEeeEEEEEcCCC
Q psy17205         72 LFTDFGNYSCVAENSMG   88 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~   88 (106)
                      ...|.|.|.|.+.+..+
T Consensus        81 ~~~DsG~Y~C~~~~~~g   97 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQ   97 (238)
T ss_dssp             CGGGCEEEEEEEEC---
T ss_pred             CcccCeeEEEEEEeCCC
Confidence            99999999999998754

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.08  E-value=1.8e-09  Score=55.23  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEee--cCCCCeEEEeeCCEEc-----C-----------------------CC--CCEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHF--AFCRPQVIWYKETLKL-----D-----------------------TT--ERRI   56 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~--~~p~p~~~w~~~~~~l-----~-----------------------~~--~~~~   56 (106)
                      .+...+..+.+..|+++.|.|....  ..+.+.+.|++.+...     .                       ..  .++.
T Consensus         6 ~v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~   85 (135)
T 1xt5_A            6 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS   85 (135)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEE
T ss_pred             EEeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEE
Confidence            3445566788899999999998752  1467889999864221     0                       00  2222


Q ss_pred             EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC-----cceEEEEEEE
Q psy17205         57 METRGRRHTLVIRKVLFTDFGNYSCVAENSMG-----KTRQYLELSG   98 (106)
Q Consensus        57 ~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~~   98 (106)
                      +.. .....|.|.++...|.|.|.|.+.+...     .....+.|.+
T Consensus        86 ~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V  131 (135)
T 1xt5_A           86 VAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV  131 (135)
T ss_dssp             ESC-TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEE
T ss_pred             Eec-CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEE
Confidence            211 1235799999999999999999998533     2334555554

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.08  E-value=1.5e-09  Score=62.25  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCC------eEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRP------QVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIR   69 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p------~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~   69 (106)
                      +...+..+.+..|+.+.|.|...+ .+.+      .+.|+++.  .   .+.         ...++..........|.|.
T Consensus       162 v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  240 (291)
T 2gki_A          162 MSQSPSSLAVSAGEKVTMSCKSSQ-SLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIS  240 (291)
T ss_dssp             EECSCSEEEEETTSCEEEEEEESS-CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             EEcCCCEEEEcCCCcEEEEEEcCC-ccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEEC
Confidence            444455677889999999999988 7765      89999852  1   111         0235554444456689999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      ++...|.|.|.|.+.+.
T Consensus       241 ~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          241 SVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCCHHHCEEEEEEEccC
Confidence            99999999999999984

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.08  E-value=2.4e-09  Score=58.53  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=52.4

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEcC----------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKLD----------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l~----------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      ..+.+..|+++.|.|.+.+ .+  .+.+.|+++.  ..+.                ...++.+...  .....|.|.++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTG-DSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             SCSEECTTSCEEEEEEEES-SCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEecCCCcEEEEEEEec-ccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            3457789999999999988 65  4899998752  1110                1235554432  235689999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus        87 ~~D~G~Y~C~~~~~~  101 (210)
T 3d9a_H           87 TEDTATYYCANWDGD  101 (210)
T ss_dssp             GGGCEEEEEEETTSS
T ss_pred             cccCEEEEEEEecCc
Confidence            999999999998853

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.07  E-value=4.4e-10  Score=71.45  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=61.7

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEE-Ee--eCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVI-WY--KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~-w~--~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +|.+. ....+.+..|+.+.|.|.+.+ .|.|.+. |+  +++..+.......+........|.|.++...|.|.|.|.+
T Consensus       165 ~p~~~-~~~~~~v~~G~~v~l~C~~~g-~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          165 TPHFL-RIQNVEVNAGQFATFQCSAIG-RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             SCEEC-CCCCEEEETTSCEEEEEEEES-CCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             ccccc-cccceEEeCCCcEEEEEEeCC-CCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEE
Confidence            34554 345678889999999999999 9999887 77  5665443321111111112357999999999999999999


Q ss_pred             EcCCCc-ceEEEEEE
Q psy17205         84 ENSMGK-TRQYLELS   97 (106)
Q Consensus        84 ~~~~~~-~~~~~~l~   97 (106)
                      .|..|. ......|.
T Consensus       243 ~n~~G~~~s~~~~l~  257 (731)
T 2v5y_A          243 RTEGGVGISNYAELV  257 (731)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             ECCCCCcceeeEEEE
Confidence            999887 44334444

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.07  E-value=2.5e-10  Score=61.17  Aligned_cols=63  Identities=11%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      +..+.|.|.+.+ .|.|.+.|++++..+....+           +.+..+...|.|.|.|.+.|..|...+...|
T Consensus       110 ~~~v~L~C~~~g-~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          110 CSNATLTCEVLE-GTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             TTTTEEEEECSS-CSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEecC-CCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            456899999999 89999999999987654322           2334666889999999999998877765443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.07  E-value=9.5e-10  Score=59.35  Aligned_cols=83  Identities=17%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             CeEEeecCCeEEEEEEEee-cCCCCeEEEee--CCEEc----------CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205         15 RRIIETRGRRHTLIFFFHF-AFCRPQVIWYK--ETLKL----------DTTERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~-~~p~p~~~w~~--~~~~l----------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      ..+....|+.+.|.|.... +.+.+.+.|++  ++..+          ....++.+..++   +|.|.++...|.|.|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEE
Confidence            4567788999999994321 13467899999  77655          233454444333   79999999999999999


Q ss_pred             EEEcCCCcce--EEEEEEEeC
Q psy17205         82 VAENSMGKTR--QYLELSGKY  100 (106)
Q Consensus        82 ~~~~~~~~~~--~~~~l~~~~  100 (106)
                      .+.|..|...  ..+.|.+..
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~  104 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQE  104 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEEC
T ss_pred             EEEeCCCceeEEEEEEEEEcC
Confidence            9999877653  345555443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.07  E-value=3.2e-10  Score=65.75  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=45.9

Q ss_pred             eecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCC--CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTE--RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~--~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..|+.+.|.|.+.+ .+++  .+.|++++..+....  .......+.   ...|.|..+...|.|.|.|.+.|..+...
T Consensus       232 ~~~G~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~  310 (327)
T 2wng_A          232 VRAENQVNVTCQVRK-FYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV  310 (327)
T ss_dssp             CSSTTCCEEEEEEEE-EBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred             cCCCCcEEEEEEEcc-ccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence            558999999999998 6554  799999998765321  111111111   13578888888999999999999987654


Q ss_pred             E
Q psy17205         92 Q   92 (106)
Q Consensus        92 ~   92 (106)
                      .
T Consensus       311 s  311 (327)
T 2wng_A          311 S  311 (327)
T ss_dssp             E
T ss_pred             h
Confidence            3

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.07  E-value=9e-10  Score=62.09  Aligned_cols=91  Identities=16%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEe---ecCCCCeEEEeeCCEEcCCC------------------CCEEEEE--cCcEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFH---FAFCRPQVIWYKETLKLDTT------------------ERRIMET--RGRRHT   65 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~---~~~p~p~~~w~~~~~~l~~~------------------~~~~~~~--~~~~~~   65 (106)
                      .+...+..+.+..|+.+.|.|...   + .+.+.+.|++++......                  .++.+..  ......
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEE-KHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSC-CCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCC-CceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            445556678889999999999987   5 677889999865322111                  1222111  011246


Q ss_pred             EEEcccCCCCCEeeEEEEEcCCCcc--eEEEEEEEeC
Q psy17205         66 LVIRKVLFTDFGNYSCVAENSMGKT--RQYLELSGKY  100 (106)
Q Consensus        66 l~~~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~~~~  100 (106)
                      |.|.++...|.|.|.|.+.+..+..  ...+.|.+.+
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  122 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP  122 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec
Confidence            9999999999999999999865444  3344554443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.07  E-value=7.7e-10  Score=62.97  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=59.6

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ........+..|+.+.|.|.+.++.+.+.+.|+++ +..+....+.......   .|.|.++...|.|.|.|.+.|..+.
T Consensus        93 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~  169 (292)
T 4dkd_C           93 NVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRK  169 (292)
T ss_dssp             EESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSC
T ss_pred             cccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCc
Confidence            34455677889999999999987122378999987 4555444444332222   4899999999999999999987664


Q ss_pred             ceE-EEEEEEe
Q psy17205         90 TRQ-YLELSGK   99 (106)
Q Consensus        90 ~~~-~~~l~~~   99 (106)
                      ... .+.|.+.
T Consensus       170 ~~s~~~~l~V~  180 (292)
T 4dkd_C          170 VMSISIRLKVQ  180 (292)
T ss_dssp             EECCCEEEEEE
T ss_pred             eeEEEEEEEEe
Confidence            433 4555544

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.07  E-value=9e-10  Score=64.03  Aligned_cols=80  Identities=25%  Similarity=0.324  Sum_probs=60.1

Q ss_pred             EEeecCCeEEEEEE-----EeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc-
Q psy17205         17 IIETRGRRHTLIFF-----FHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK-   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c~-----~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~-   89 (106)
                      ..+..|+.+.|.|.     ..+ .|.+.+.|++++..+... .++....  ....|.|.++...|.|.|.|.+.|..+. 
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g-~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  206 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRD-KTDVKIQWYKDSLLLDKDNEKFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQ  206 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCS-SSCCCBCCEESSCBCCTTCSSEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTB
T ss_pred             eEEECCCCEEEEecCCcccccC-CCCceEEEecCCeeCCCCCceeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCe
Confidence            45678999999999     777 889999999999887654 3332222  1237999999999999999999998763 


Q ss_pred             ---ceEEEEEEEe
Q psy17205         90 ---TRQYLELSGK   99 (106)
Q Consensus        90 ---~~~~~~l~~~   99 (106)
                         ....+.|.+.
T Consensus       207 ~~~~~~~~~l~V~  219 (339)
T 3o4o_C          207 QYNITRSIELRIK  219 (339)
T ss_dssp             CCEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEE
Confidence               3334555543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.07  E-value=2.2e-09  Score=60.31  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=49.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..+..|+++.|.|.+.+  +.+.+.|++++..+...    .........|.|.++...|.|.|.|.+.+.
T Consensus       111 ~~v~~G~~vtL~C~~~~--~~~~~~w~k~g~~~~~~----~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          111 PEVISGEKVTFYCRLDT--ATSMFLLLKEGRSSHVQ----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             SEEETTCEEEEEEECTT--SCSEEEEEECSSSCEEE----EEECSSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             CccCCCCcEEEEEecCC--CCCEEEEEECCCccCcc----ccCCCceEEEEeCCCccccCEEEEEEEECC
Confidence            34678999999999876  45689999998654431    122234568999999999999999999875

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=99.06  E-value=3.1e-09  Score=53.21  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCC-----EEcC------------CCCCEEEEE--cCcEEEEEEc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKET-----LKLD------------TTERRIMET--RGRRHTLVIR   69 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~-----~~l~------------~~~~~~~~~--~~~~~~l~~~   69 (106)
                      +...+..+.+..|+++.|.|.... . ....+.|++..     ..+.            ...++....  ......|+|.
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   81 (116)
T 1tvd_A            3 VTQSSPDQTVASGSEVVLLCTYDT-VYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEEC-CSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             eecCCCcEEEecCCeEEEEeEeEc-CCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEc
Confidence            344566678889999999999876 4 56689998753     1110            024555543  3456689999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      +++.+|.|.|.|.+.+.
T Consensus        82 ~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           82 PVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             cCChHHCEEEEEEEeCC
Confidence            99999999999999874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.06  E-value=6.2e-09  Score=60.10  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+  +.+.+.|++++..+.......... ......|.|.++...|.|.|.|.+.|..+.
T Consensus       130 v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          130 VKSGERVILQCWSDI--MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             EETTCCEEEEEEESS--CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             cCCCCeEEEEEcCCC--CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            678999999999954  667899999987664321111111 123457999999999999999999998663

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=99.06  E-value=9.3e-09  Score=52.95  Aligned_cols=76  Identities=21%  Similarity=0.259  Sum_probs=58.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC---CEE---c-CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE---TLK---L-DTTERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~---~~~---l-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .+...+..+.+..|+++.|.|...+ . ...+.||+.   +..   + ....++..........|+|.+++.+|.|.|.|
T Consensus        20 ~v~Q~p~~~~v~~G~svtL~C~~s~-~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   97 (134)
T 3kg5_A           20 RIWQSPRFIARKRGFTVKMHCYMNS-A-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFC   97 (134)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCC-T-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEE
T ss_pred             EEEEeCCEEEEeCCCCEEEEEEECC-C-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEE
Confidence            3445566788899999999999987 5 578899986   321   2 22346666555667789999999999999999


Q ss_pred             EEEcC
Q psy17205         82 VAENS   86 (106)
Q Consensus        82 ~~~~~   86 (106)
                      .+.+.
T Consensus        98 ~~~~~  102 (134)
T 3kg5_A           98 QQKCN  102 (134)
T ss_dssp             EEECT
T ss_pred             EEEcC
Confidence            99875

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.06  E-value=3.6e-10  Score=62.32  Aligned_cols=86  Identities=15%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcC---------CCCCE--EEE----------EcCcEEEEEEcc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLD---------TTERR--IME----------TRGRRHTLVIRK   70 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~---------~~~~~--~~~----------~~~~~~~l~~~~   70 (106)
                      .+..+.+..|+.+.|.|.+.+ .+. +.+.|++++....         ....+  ...          ... ...|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L~i~~   83 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTG-THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS-QGRLVLAE   83 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBS-CCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECT-TCCEEESS
T ss_pred             CCCcEEEEcCCCEEEecccCC-CCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCC-CceEEEcc
Confidence            355678889999999999998 774 8999997543211         00001  111          111 12399999


Q ss_pred             cCCCCCEeeEEEEEcCC-CcceEEEEEEEeC
Q psy17205         71 VLFTDFGNYSCVAENSM-GKTRQYLELSGKY  100 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~-~~~~~~~~l~~~~  100 (106)
                      +...|.|.|.|.+.+.. +.....+.|.+..
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  114 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFA  114 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEB
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEe
Confidence            99999999999999876 5656666666443

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.06  E-value=4.5e-10  Score=63.27  Aligned_cols=80  Identities=15%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC--C--C----------CCEEEE--EcCcEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD--T--T----------ERRIME--TRGRRHTL   66 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~--~--~----------~~~~~~--~~~~~~~l   66 (106)
                      +.+...+..+.+..|+++.|.|...+ .+.+.+.|++..     ..+.  .  .          .+....  .......|
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAE-GSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             --------CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEcc-CCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            34555666788899999999999998 888899999831     1000  0  0          011111  11223469


Q ss_pred             EEcccCCCCCEeeEEEEEcCCC
Q psy17205         67 VIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .|.++...|.|.|.|.+.+..+
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTS
T ss_pred             EECCCCcccCEEEEEEEeeCCc
Confidence            9999999999999999998654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.06  E-value=4.8e-09  Score=58.63  Aligned_cols=86  Identities=13%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCe-----EEEeeCCEEcCCC--------CCEE-------EE---EcCcEEEEEEc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQ-----VIWYKETLKLDTT--------ERRI-------ME---TRGRRHTLVIR   69 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~-----~~w~~~~~~l~~~--------~~~~-------~~---~~~~~~~l~~~   69 (106)
                      .+..+.+..|+.+.|.|...+ .|.+.     +.|++++......        ....       +.   ......+|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g-~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFY-SQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEE-SSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             CCCCeEEeCCCCEEEeeEEec-CCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            445677889999999999998 77765     9999863221100        0000       00   00123359999


Q ss_pred             ccCCCCCEeeEEEEEcCCCcceEEEEEEEe
Q psy17205         70 KVLFTDFGNYSCVAENSMGKTRQYLELSGK   99 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~   99 (106)
                      ++...|.|.|.|.+.+..+.....+.|.+.
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~  117 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVV  117 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEe
Confidence            999999999999999887665555555543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.06  E-value=1.8e-10  Score=62.11  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=49.0

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      +..|+.+.|.|.+    |.|.+.|++++..+.....       ....|.|.++...|.|.|.|.+.|..|..
T Consensus       119 ~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL----TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS----SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC----CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            3489999999976    5689999999988764321       23368899999999999999999987654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.05  E-value=4.1e-09  Score=59.19  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=55.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      +..+.+..|+.+.|.|...+ .  +.+.+.|++..     ..+         ....++..........|.|.++...|.|
T Consensus         9 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSS-SNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCT-TTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEEcCCCcEEEEEecCC-CCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            34577889999999999987 6  77899999842     111         0123555555555678999999999999


Q ss_pred             eeEEEEEcCCC
Q psy17205         78 NYSCVAENSMG   88 (106)
Q Consensus        78 ~y~C~~~~~~~   88 (106)
                      .|.|.+.+..+
T Consensus        88 ~Y~C~~~~~~~   98 (256)
T 3ux9_B           88 DYYCQVRDNNE   98 (256)
T ss_dssp             EEEEEEEETTT
T ss_pred             EEEEEEEECCC
Confidence            99999998543

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.05  E-value=2.1e-09  Score=53.28  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=53.8

Q ss_pred             eEEeecCCeEEEEEEEeecCCCC-----eEEEeeCCEE-c---CC------------CCCEEEEEcCcEEEEEEcccCCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRP-----QVIWYKETLK-L---DT------------TERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p-----~~~w~~~~~~-l---~~------------~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+.+..|+++.|.|...+ .+.+     .+.|++.+.. +   ..            ..+....  ....+|.|.+++..
T Consensus         3 ~v~~~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~sL~I~~v~~~   79 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFAN-SQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD--SDSWTLRLHNLQIK   79 (110)
T ss_dssp             EEEEETTSCEEEECCCCC-TTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEE--TTTTEEEECSCCGG
T ss_pred             EEEEEeCCCEEEEeEeCC-CCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEE--CCCEEEEEcCCChH
Confidence            356789999999999876 4443     4899987531 0   00            1122222  12357999999999


Q ss_pred             CCEeeEEEEEcCCCcceEEEEEE
Q psy17205         75 DFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        75 ~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      |.|.|.|.+.+..+.....+.+.
T Consensus        80 D~G~Y~C~v~~~~~~~~~~~~~~  102 (110)
T 1ncn_A           80 DKGLYQCIIHHKKPTGMIRIHQM  102 (110)
T ss_dssp             GCEEEEEEEEEECSSSEEEEEEE
T ss_pred             HCEEEEEEEEcCCCCceEEEEEE
Confidence            99999999998776665544433

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.05  E-value=1.8e-09  Score=60.21  Aligned_cols=90  Identities=19%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEee--cCCCCeEEEeeCCEEcC------------------------------CCCCEEE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHF--AFCRPQVIWYKETLKLD------------------------------TTERRIM   57 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~--~~p~p~~~w~~~~~~l~------------------------------~~~~~~~   57 (106)
                      +......+.+..|+.+.|.|...+  ..+.+.+.|++++....                              ...+..+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            334555788889999999998874  13678899998864320                              0111111


Q ss_pred             EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc-----eEEEEEEEeC
Q psy17205         58 ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT-----RQYLELSGKY  100 (106)
Q Consensus        58 ~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~-----~~~~~l~~~~  100 (106)
                      .. .....|.|.++...|.|.|.|.+.+..+..     ...+.|.+..
T Consensus        85 ~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  131 (250)
T 2fbo_J           85 AN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  131 (250)
T ss_dssp             SC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETT
T ss_pred             cc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEec
Confidence            11 012369999999999999999999876543     3355565443

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=99.05  E-value=1.1e-08  Score=51.81  Aligned_cols=75  Identities=21%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC--E----EcCCCCCEEEEE--cCcEEEEEEcccCCCCCEee
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET--L----KLDTTERRIMET--RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~--~----~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +...+..+.+..|+++.|.|...+ .  +.+.+.|++..  .    .+....++....  ......|+|.+++.+|.|.|
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y   81 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRD-SRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTY   81 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECS-CCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             cEECCcEEEEecCCcEEEEeEccC-CCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCCCEEEEEECCCChhhCEEE
Confidence            344566788889999999999976 4  34689999753  1    122234554432  24567899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+..
T Consensus        82 ~C~~~~   87 (121)
T 2i24_N           82 RCKPES   87 (121)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=5.2e-11  Score=69.76  Aligned_cols=88  Identities=17%  Similarity=0.091  Sum_probs=65.0

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCE-eeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~   85 (106)
                      +|.+...+..+.+..|+.+.+.|.+.+ .|.+.+.|++++..+......  ........|.|.++...|.| .|.|.+.|
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g-~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n  234 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEG-RGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAEN  234 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEEC-SSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEec-CCCCEEEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEc
Confidence            455665566677889999999999999 999999999987554321100  01133557999999999999 99999999


Q ss_pred             CCCcceEEEEEE
Q psy17205         86 SMGKTRQYLELS   97 (106)
Q Consensus        86 ~~~~~~~~~~l~   97 (106)
                      ..|.....+.+.
T Consensus       235 ~~g~~~~~~~l~  246 (347)
T 2ifg_A          235 DVGRAEVSVQVN  246 (347)
T ss_dssp             TTEECCEEECCC
T ss_pred             CCCCEEEEEEEE
Confidence            877665554443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.04  E-value=2.9e-09  Score=60.34  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVI   68 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~   68 (106)
                      ..+...+..+.+..|+.+.|.|...+ .+     .+.+.|++..  .   .+.         ...++..........|.|
T Consensus        16 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           16 VVMTQTPLSLPVSLGDQASISCRSSQ-SLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCEEEECSEECCCTTCCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             ceEEeeCCeEEecCCCCEEEEeEecC-CcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            44555666778889999999999988 66     4789999752  1   111         124565554455678999


Q ss_pred             cccCCCCCEeeEEEEEcCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .++...|.|.|.|.+.+..+
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~  114 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVP  114 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSS
T ss_pred             CCCChhHCEEEEEEEecCCC
Confidence            99999999999999988643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.04  E-value=7.8e-09  Score=57.66  Aligned_cols=75  Identities=21%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEee--------------CCEEcCC----CCCEEEEEc-CcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYK--------------ETLKLDT----TERRIMETR-GRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~--------------~~~~l~~----~~~~~~~~~-~~~~~l~~~   69 (106)
                      .+...+..+.+..|+.+.|.| ..+ .+.+.+.|++              ++.....    ..++.+... .....|.|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPV-SNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECC-TTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcC-CCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            344556678889999999999 556 7889999998              2211111    135544432 345689999


Q ss_pred             ccCCCCCEeeEEEEEc
Q psy17205         70 KVLFTDFGNYSCVAEN   85 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~   85 (106)
                      ++...|.|.|.|.+.+
T Consensus        82 ~v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           82 PTALEDSAVYFCASSF   97 (245)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCHhHCEEEEEEEcc
Confidence            9999999999999985

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.61  E-value=2.2e-11  Score=60.66  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE--Ec------------CCCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL--KL------------DTTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~--~l------------~~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      ..+..+.+..|+.+.|.|...+ .+.+.+.|++...  .+            ....++....  ......|+|.+++.+|
T Consensus         4 Q~p~~v~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   82 (110)
T 1u3h_A            4 QSPQSLTVWEGETAILNCSYEN-SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
Confidence            3455677889999999999988 7778999998631  11            0112333322  2234579999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .|.|.|.+.+.
T Consensus        83 sG~Y~C~~~~~   93 (110)
T 1u3h_A           83 SATYFCAASAN   93 (110)
Confidence            99999998864

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.04  E-value=3e-09  Score=54.17  Aligned_cols=77  Identities=16%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCE----EcC-C-C---CCEEEE-----EcCcEEEEEEcccCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETL----KLD-T-T---ERRIME-----TRGRRHTLVIRKVLF   73 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~----~l~-~-~---~~~~~~-----~~~~~~~l~~~~~~~   73 (106)
                      .+...+..+.+..|+++.|.|...+ . +.+.+.|++.+.    .+. . .   .++...     .......|.|.++..
T Consensus         5 ~v~q~p~~~~v~~G~~vtL~C~~~~-~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (127)
T 2jju_A            5 QVIQPEKSVSVAAGESATLRCAMTS-LIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITP   83 (127)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESC-CCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCG
T ss_pred             EEEeeCCeEEEeCCCCEEEEEEEeC-CCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCH
Confidence            3445566788899999999999987 5 567899998651    111 1 0   123211     112245799999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.+.
T Consensus        84 ~DsG~Y~C~~~~~   96 (127)
T 2jju_A           84 ADAGTYYCVKFRK   96 (127)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             HHCEEEEEEEEcC
Confidence            9999999999874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.04  E-value=8.4e-09  Score=58.07  Aligned_cols=81  Identities=12%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC------------CCCCEEEEE-cCcEEEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD------------TTERRIMET-RGRRHTLVI   68 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~------------~~~~~~~~~-~~~~~~l~~   68 (106)
                      ++.+...+..+.+..|+.+.|.|.+.+ . .+.+.|++..  .   .+.            ...++.... ......|.|
T Consensus       137 ~~~v~~~p~~~~v~~G~~v~L~C~~~~-~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I  214 (256)
T 3tf7_C          137 EAAVTQSPRNKVTVTGENVTLSCRQTN-S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTL  214 (256)
T ss_dssp             -CCEEESCSEEEEETTCCEEECEEECS-C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEE
T ss_pred             ccEEEecCCEEEEeCCCcEEEEEEcCC-C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEE
Confidence            345556666777889999999999988 5 7899999832  1   000            011222221 223457999


Q ss_pred             cccCCCCCEeeEEEEEcCCCc
Q psy17205         69 RKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .++...|.|.|.|.+.|..|.
T Consensus       215 ~~v~~~DsG~Y~C~a~n~~g~  235 (256)
T 3tf7_C          215 ESASPSQTSLYFCASSDAPGQ  235 (256)
T ss_dssp             SSCCGGGCEEEEEEEEEETTE
T ss_pred             CCCCHHHCEEEEEEecCCCCc
Confidence            999999999999999887553

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=99.04  E-value=7.6e-09  Score=52.12  Aligned_cols=70  Identities=20%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             eEEeecCCeEEEEEEEeecCC---CCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC---RPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+.+..|+++.|.|...+ .+   ...+.|++..  .   .+.         ...++..........|.|.+++.+|.|.
T Consensus         9 ~~~~~~G~~v~L~C~~~~-~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~   87 (120)
T 1oaq_L            9 ALTTSPGETVTLTCRSST-GAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (120)
T ss_dssp             EEEECTTCEEEEEEEETT-BCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             cEEEcCCCCEEEEEEeCC-CccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeE
Confidence            478889999999999977 54   5789998742  1   110         1235655544556789999999999999


Q ss_pred             eEEEEEcC
Q psy17205         79 YSCVAENS   86 (106)
Q Consensus        79 y~C~~~~~   86 (106)
                      |.|.+.+.
T Consensus        88 Y~C~~~~~   95 (120)
T 1oaq_L           88 YFCALWYS   95 (120)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEccC
Confidence            99999875

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.03  E-value=2.6e-09  Score=59.79  Aligned_cols=71  Identities=8%  Similarity=0.098  Sum_probs=52.5

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeC--CEEcC-----------------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLKLD-----------------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~l~-----------------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +....+..|+.+.|.|.+.+ .+  .+.+.|+++  +..+.                 ...++.+...  .....|.|.+
T Consensus       138 ~~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  216 (250)
T 3esu_F          138 SGPELVKPGASVKISCKDSG-YAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSS  216 (250)
T ss_dssp             CCCEEECTTCCEEEEEECCS-TTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCceEEcCCceEEEEEEecC-CcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECC
Confidence            34466788999999999988 66  789999986  32210                 1134444432  3455799999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +...|.|.|.|.+.+
T Consensus       217 v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          217 LTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccCEEEEEEEec
Confidence            999999999999997

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.03  E-value=1.5e-09  Score=61.86  Aligned_cols=73  Identities=10%  Similarity=-0.018  Sum_probs=55.8

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCC-CeEEEe-eCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCE-eeEEEEEcCCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCR-PQVIWY-KETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAENSMG   88 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~-~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~   88 (106)
                      .....+.+..|+.+.|.|.+.+  |. +.+.|+ +++..+....++......   .|.|.++...|.| .|.|.+.|..+
T Consensus        96 ~~~~~~~~~~g~~v~l~C~~~~--p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~  170 (290)
T 2o26_X           96 LVGLPLFGKEDSDALVRCPLTD--PQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGT  170 (290)
T ss_dssp             CCCCCEEEETTSCEEECCCBSC--CSCEEEEEEETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTE
T ss_pred             ccccceEEecCCeEEEeCcCCC--CCCceEEEEeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCc
Confidence            4445577779999999999876  66 899995 677777655444333322   6899999999999 99999999754


Q ss_pred             c
Q psy17205         89 K   89 (106)
Q Consensus        89 ~   89 (106)
                      .
T Consensus       171 ~  171 (290)
T 2o26_X          171 W  171 (290)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=99.03  E-value=4.1e-09  Score=52.81  Aligned_cols=75  Identities=17%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCC--E---Ec-----CC-----CCCEEEE--EcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKET--L---KL-----DT-----TERRIME--TRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~--~---~l-----~~-----~~~~~~~--~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+++.|.|...+ . ..+.+.|++..  .   .+     ..     ..++...  .......|+|.++
T Consensus         3 v~q~p~~~~~~~G~~vtL~C~~~~-~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   81 (116)
T 1fo0_A            3 VTQTQTSISVMEKTTVTMDCVYET-QDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT   81 (116)
T ss_dssp             EECCCCEEEEETTCCEEECCEECC-CCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC
T ss_pred             cCcCCCcEEEecCCcEEEEeEecC-CCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            344566788899999999999987 5 55689998742  1   11     00     1345443  2344668999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      +.+|.|.|.|.+.+
T Consensus        82 ~~~DsG~Y~C~~~~   95 (116)
T 1fo0_A           82 QIEDSAVYFCAMRG   95 (116)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ChhhCEEEEEEEEc
Confidence            99999999999987

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=99.03  E-value=7.1e-08  Score=49.56  Aligned_cols=78  Identities=15%  Similarity=0.115  Sum_probs=56.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC--E---Ec----------CCCCCEEEEE--cCcEEEEEEcc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET--L---KL----------DTTERRIMET--RGRRHTLVIRK   70 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~--~---~l----------~~~~~~~~~~--~~~~~~l~~~~   70 (106)
                      .+...+..+.+..|+.+.|.|.... .. ...+.|++..  .   .+          ....++....  ......|.|.+
T Consensus        11 ~v~Q~p~~v~v~~G~~vtL~C~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~   89 (134)
T 3bik_B           11 SLTFYPAWLTVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILD   89 (134)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESS-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECS
T ss_pred             cEEECCCeEEEeCCCCEEEEEEeCC-CCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECC
Confidence            3445566788899999999999876 43 4689999742  1   11          0124565543  34567899999


Q ss_pred             cCCCCCEeeEEEEEcCC
Q psy17205         71 VLFTDFGNYSCVAENSM   87 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~   87 (106)
                      ++.+|.|.|.|.+.+..
T Consensus        90 ~~~~Dsg~Y~C~~~~~~  106 (134)
T 3bik_B           90 TRRNDSGIYLCGAISLH  106 (134)
T ss_dssp             CCGGGCEEEEEEEEECS
T ss_pred             CChHHCEEEEEEEEeCC
Confidence            99999999999988643

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.02  E-value=3.1e-09  Score=57.83  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=46.5

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC-cEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG-RRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+..|+.+.|.|.+.+  +.+.+.|++++..+...........+ ....|.|.++.  |.|.|.|.+.+.
T Consensus       118 ~v~~G~~v~L~C~~~~--~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          118 TVLAGENVTLSCSSRS--SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EECTTCEEEEEEEESS--CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             ccCCCCeEEEEEeCCC--CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            5678999999999876  56789999998765432111111111 14478999998  999999999864

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.02  E-value=8.5e-10  Score=60.29  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCC----------------CCCEEEEE-------cCcEEEEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDT----------------TERRIMET-------RGRRHTLVI   68 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~----------------~~~~~~~~-------~~~~~~l~~   68 (106)
                      ..+.+..|+.+.|.|...+ .+.+   .+.|++++..+..                ..+.....       .....+|.|
T Consensus         9 ~~V~~~~G~~v~L~C~~~~-~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLP-PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             SEEEEETTSCEEECCEECS-SCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CEEEEecCCCEEEEEEEEC-CCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3577889999999999988 6665   3789987532210                01111100       112346999


Q ss_pred             cccCCCCCEeeEEEEEcCCCcceE
Q psy17205         69 RKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .++...|.|.|.|.+.+..+....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCccee
Confidence            999999999999999887655443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.02  E-value=1e-09  Score=60.74  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=54.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCC-C-eEEEeeCC--EEc------------CCCCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCR-P-QVIWYKET--LKL------------DTTERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~-p-~~~w~~~~--~~l------------~~~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      +..+.+..|+.+.|.|...+ .+. + .+.|++++  ..+            ....++..........|.|.++...|.|
T Consensus        26 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  104 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSS-SNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEA  104 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCT-TTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCS
T ss_pred             CCcEEeeCCCcEEEEEEecC-CCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCE
Confidence            55677889999999999987 543 4 69999863  111            0123555544455668999999999999


Q ss_pred             eeEEEEEcCCC
Q psy17205         78 NYSCVAENSMG   88 (106)
Q Consensus        78 ~y~C~~~~~~~   88 (106)
                      .|.|.+.+..+
T Consensus       105 ~Y~C~~~~~~~  115 (234)
T 2j6e_L          105 DYYCATWDDSL  115 (234)
T ss_dssp             EEEEEEEETTT
T ss_pred             EEEEEEEcCCc
Confidence            99999998765

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.02  E-value=3.8e-09  Score=61.48  Aligned_cols=86  Identities=19%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+......+.+..|+++.|.|.+.+ .+ .+.+.|++++..+.... .....  ....|.|.++...|.|.|.|..   
T Consensus         7 ~~~~~p~~~v~~~~G~~v~l~C~~~~-~~~~~~i~W~~~~~~~~~~~-~~~~~--~~~~L~i~~v~~~d~G~Y~C~~---   79 (325)
T 1n26_A            7 PAQEVARGVLTSLPGDSVTLTCPGVE-PEDNATVHWVLRKPAAGSHP-SRWAG--MGRRLLLRSVQLHDSGNYSCYR---   79 (325)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSC-TTCCSEEEEEEECSSSSCCC-EEEEE--ESSEEEECSCCGGGCEEEEEES---
T ss_pred             CccccCCCcEECCCCCcEEEEeCCCC-CCCCceEEEEECCccCCccc-ccccc--ccceEEecccchhhCeEeEEEe---
Confidence            34444555566679999999999887 44 78999998876553221 11111  1237999999999999999993   


Q ss_pred             CCcceEEEEEEEeC
Q psy17205         87 MGKTRQYLELSGKY  100 (106)
Q Consensus        87 ~~~~~~~~~l~~~~  100 (106)
                      .|.......|.+..
T Consensus        80 ~g~~~~~~~L~V~~   93 (325)
T 1n26_A           80 AGRPAGTVHLLVDV   93 (325)
T ss_dssp             SSSCSCEEEEEECC
T ss_pred             CCEEeeeEEEEecc
Confidence            45555556666443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.02  E-value=1.8e-08  Score=56.32  Aligned_cols=77  Identities=19%  Similarity=0.246  Sum_probs=56.9

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC--E---EcC--------------CCCCEEEEEcC--cEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET--L---KLD--------------TTERRIMETRG--RRHT   65 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~--~---~l~--------------~~~~~~~~~~~--~~~~   65 (106)
                      .+...+..+.+..|+++.|.|...+ .  +.+.+.|++..  .   .+.              ...++.+....  ....
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSG-ITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEES-SCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCC-ccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            4455667788999999999999987 5  56789999842  1   110              22355544322  4668


Q ss_pred             EEEcccCCCCCEeeEEEEEcC
Q psy17205         66 LVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        66 l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.|.+++..|.|.|.|.+.+.
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEA  102 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEE
T ss_pred             EEECCCCcccCEEEEEeeecC
Confidence            999999999999999999875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.02  E-value=5.1e-09  Score=51.60  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             eEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEEc---------CC--------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLKL---------DT--------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~l---------~~--------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      .+.+..|+++.|.|...+ .+.   ..+.|++.....         ..        ..++.+..  .....+|.|.++..
T Consensus         3 ~v~~~~G~~v~L~C~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   81 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTL-PTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTL   81 (109)
T ss_dssp             EEEECTTSCEEECCBCCC-CTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCG
T ss_pred             CEEEEcCCCEEEEEEeEC-CCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCC
Confidence            356788999999999877 543   348999854210         01        11222211  11234799999999


Q ss_pred             CCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         74 TDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|.|.|.+.+..+.....+.|.
T Consensus        82 ~D~G~Y~C~v~~~~~~~~~~~~l~  105 (109)
T 2oyp_A           82 DDHGTYCCRIQFPGLMNDKKLELK  105 (109)
T ss_dssp             GGCEEEEEEECCSSTTCCEEEEEE
T ss_pred             hhCeEEEEEEEcCCcccceEEEEE
Confidence            999999999998765555544444

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.02  E-value=1.6e-10  Score=64.04  Aligned_cols=79  Identities=14%  Similarity=0.265  Sum_probs=44.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCE--Ec------------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETL--KL------------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~--~l------------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      .+...+..+.+..|+++.|.|...+ .+.+.+.|++++.  .+            ....++..........|.|.++...
T Consensus        25 ~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           25 TVTQSPASLSMSIGEKVTIRCITST-DIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CEEEECSBC-------CCEEEEEEE-EESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eEEEcCCeEEEecCCCEEEEEecCC-cCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            3444456677889999999999988 7788899987531  11            0012332222233457999999999


Q ss_pred             CCEeeEEEEEcCCC
Q psy17205         75 DFGNYSCVAENSMG   88 (106)
Q Consensus        75 ~~g~y~C~~~~~~~   88 (106)
                      |.|.|.|.+.+..+
T Consensus       104 D~G~Y~C~~~~~~~  117 (233)
T 3bqu_C          104 DVADYYCLQSDNLP  117 (233)
T ss_dssp             CCSEEEEEECSSSS
T ss_pred             HCEEEEEEEecCCc
Confidence            99999999987654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.02  E-value=1.2e-09  Score=59.23  Aligned_cols=85  Identities=21%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             eEEeecCCeEEEEEEEee---cCCCCeEEEeeCCEEcCC------------CCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205         16 RIIETRGRRHTLIFFFHF---AFCRPQVIWYKETLKLDT------------TERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~---~~p~p~~~w~~~~~~l~~------------~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      .+.+..|+.+.|.|...+   +.+.+.+.|++++..+..            ..+..+.. .....|.|.++...|.|.|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEE
Confidence            366789999999998853   036678999998876521            11222211 22347999999999999999


Q ss_pred             EEEEcCCCcce-----EEEEEEEeCC
Q psy17205         81 CVAENSMGKTR-----QYLELSGKYP  101 (106)
Q Consensus        81 C~~~~~~~~~~-----~~~~l~~~~~  101 (106)
                      |.+.+..|...     ..+.|.+..+
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCC
Confidence            99999765432     3555555443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.02  E-value=4e-09  Score=57.33  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCC---eEEEeeCCEEcCCCC------------------CEEEEE---cCcEEEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRP---QVIWYKETLKLDTTE------------------RRIMET---RGRRHTLVI   68 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~~~l~~~~------------------~~~~~~---~~~~~~l~~   68 (106)
                      .+..+.+..|+.+.|.|.+.+ .+.+   .+.|++++..+....                  ++....   .....+|.|
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~-~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRG-DSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECC-CTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             CCCeEEEEcCCCEEEEEEEEc-CCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            345678889999999999988 7765   488998764332110                  111000   012346999


Q ss_pred             cccCCCCCEeeEEEEEcCCCcce
Q psy17205         69 RKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .++...|.|.|.|.+.+..+...
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~  106 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSF  106 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEE
T ss_pred             eeccHHHCCceeEEEEeccCcee
Confidence            99999999999999987655433

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.01  E-value=1.4e-08  Score=57.76  Aligned_cols=71  Identities=13%  Similarity=0.077  Sum_probs=53.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c--------------CCCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L--------------DTTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l--------------~~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ....+..|+.+.|.|.+.+ .+  .+.+.|++++  ..   +              ....++.....  .....|.|.++
T Consensus       142 ~~~~v~~G~~v~L~C~~~g-~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  220 (276)
T 3auv_A          142 GGGLVQPGGSLRLSCAASG-FTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSL  220 (276)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceEecCCCeEEEEEEecC-ccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCC
Confidence            4567788999999999998 66  5899999853  11   1              01235554432  34557999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      ...|.|.|.|.+.|.
T Consensus       221 ~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          221 RAEDTAVYYCARFVF  235 (276)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ChhHCEEEEEEEEcC
Confidence            999999999999997

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.01  E-value=1.4e-08  Score=54.27  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..+..|+.+.|.|.+.+ .+.|  .+.|++++..+......     .....+.+.  ...|.|.|.|.+.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~-~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~   71 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLND-SATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE   71 (184)
T ss_dssp             EEEEETTEEEEEEEEES-CSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST
T ss_pred             EEEecCCCEEEEEECCC-CCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC
Confidence            45678999999999988 7777  89999999877654321     112345555  478999999999983

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.01  E-value=8e-09  Score=57.68  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c--------------CCCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L--------------DTTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l--------------~~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+.+.|.|.+.+ .|  .+.+.|+++.  ..   +              ....++.+...  ....+|.|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g-~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASG-FAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEecc-ccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3477889999999999988 76  6789999842  10   0              11235555442  34668999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      ...|.|.|.|.+.|.
T Consensus        89 ~~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           89 RAEDTAVYYCARDRS  103 (247)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CHHHCEEEEEeeecc
Confidence            999999999999986

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.01  E-value=2.1e-09  Score=58.75  Aligned_cols=84  Identities=11%  Similarity=-0.050  Sum_probs=53.8

Q ss_pred             EEeecCCeEEEEEEEeecCCC---CeEEEeeCCEEcCCCCCEE-E---EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR---PQVIWYKETLKLDTTERRI-M---ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~l~~~~~~~-~---~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..+..|+.+.|.|.+.+ .++   +.+.|++++..+....... .   ........|.+......|.|.|.|.+.|..+.
T Consensus       101 ~~~~~G~~~~L~C~~~~-~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          101 GPLEAGKPITVKCSVAD-VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             SCEETTSCEEEEEEEEE-EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             eEEcCCCCEEEEEEECC-cCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            34668999999999988 533   3789999997664321000 0   00011234677777777889999999998765


Q ss_pred             c-------eEEEEEEEeCC
Q psy17205         90 T-------RQYLELSGKYP  101 (106)
Q Consensus        90 ~-------~~~~~l~~~~~  101 (106)
                      .       ...+.|.+..+
T Consensus       180 ~~~~~~~~~~~~~L~V~y~  198 (202)
T 1vca_A          180 MDSVPTVRQAVKELQVYIS  198 (202)
T ss_dssp             CTTSCSEEEEEEECCEECC
T ss_pred             CCCcceeEeeEEEEEEecC
Confidence            2       23455555544

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.01  E-value=7e-09  Score=57.10  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c----------------CCCCCEEEEEc--CcEEEEEEcc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L----------------DTTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l----------------~~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      .+.+..|+.+.|.|...+ .+  .+.+.|++..  ..   +                ....++.+...  .....|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSG-FTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (222)
T ss_dssp             CCEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             ceeEcCCCEEEEEEEecC-ccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECc
Confidence            456789999999999987 65  6789999742  11   1                01235554432  3456899999


Q ss_pred             cCCCCCEeeEEEEEcCC
Q psy17205         71 VLFTDFGNYSCVAENSM   87 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~   87 (106)
                      +...|.|.|.|.+.+..
T Consensus        88 v~~~D~G~Y~C~~~~~~  104 (222)
T 1q9r_B           88 LRAEDSATYYCARDHDG  104 (222)
T ss_dssp             CCGGGCEEEEEEECCCS
T ss_pred             CCcccCeEEEEEEeccC
Confidence            99999999999999864

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.00  E-value=2.1e-08  Score=55.30  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---EcC--------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KLD--------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l~--------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+++.|.|...+ .+  .+.+.|++..  .   .+.              ...++.+...  .....|.|.++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASG-FDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CeEecCCCcEEEEEEecC-ccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            477889999999999987 65  6789998742  1   110              1235555542  345689999999


Q ss_pred             CCCCEeeEEEEEcCCC
Q psy17205         73 FTDFGNYSCVAENSMG   88 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~   88 (106)
                      ..|.|.|.|.+.+..+
T Consensus        88 ~~DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           88 SEDTALYYCARLHYYG  103 (220)
T ss_dssp             GGGCEEEEEEEEETTT
T ss_pred             hhhCEEEEEEEecccc
Confidence            9999999999998643

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=99.00  E-value=1.9e-09  Score=53.88  Aligned_cols=88  Identities=17%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             CCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC-------EE-cC-C--------CCCEEEEE--cCcEEEEEEcccC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET-------LK-LD-T--------TERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~-------~~-l~-~--------~~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      +..+.+..|+++.|.|.... .  ....+.|++..       .. +. .        ..++.+..  .....+|+|.+++
T Consensus         4 p~~v~~~~G~~v~L~C~~~~-~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   82 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYST-HLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTV   82 (115)
T ss_dssp             --CEEEETTSCEEECCBCCH-HHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             ccEEEEEcCCCEEEEEEeec-CCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCC
Confidence            34577889999999998865 3  24579999864       11 10 1        11222211  1224579999999


Q ss_pred             CCCCEeeEEEEEcCCCcceEEEEEEEeCCC
Q psy17205         73 FTDFGNYSCVAENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~~~~~~~~l~~~~~~  102 (106)
                      ..|.|.|.|.+.+........+.|.+.+.+
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (115)
T 2or7_A           83 VGDGGPYCCVVEIPGAFHFVDYMLEVKPEL  112 (115)
T ss_dssp             GGGCEEEEEEECCTTSCEEEEEEEEEESCC
T ss_pred             HHHCEEEEEEEECCCceeEEEEEEEEcCCC
Confidence            999999999998764444556677665554

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=99.00  E-value=1.6e-08  Score=50.54  Aligned_cols=72  Identities=15%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             CCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCC-----EEc---CC----------CCCEEEEEcCcEEEEEEcccCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKET-----LKL---DT----------TERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~-----~~l---~~----------~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      +..+.+..|+++.|.|...+ . +...+.|++..     ..+   ..          ..++..........|+|.+++.+
T Consensus         8 p~~~~~~~G~~v~L~C~~~~-~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~   86 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSS-QHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE   86 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECG-GGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCCEEECCCCCEEEEEEecC-CCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChh
Confidence            55678889999999999877 5 56789998731     111   11          23555544455678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        87 Dsg~Y~C~~~~~   98 (115)
T 2otu_A           87 DEAIYICGVGDT   98 (115)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             HCEEEEEEEecC
Confidence            999999998865

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.00  E-value=5.1e-10  Score=64.74  Aligned_cols=81  Identities=14%  Similarity=0.051  Sum_probs=56.5

Q ss_pred             eEEeecCCeEEEEEEEeecC-----CCCeEEEeeCCEEcCCCCCEEEEEcCc-EEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         16 RIIETRGRRHTLIFFFHFAF-----CRPQVIWYKETLKLDTTERRIMETRGR-RHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ...+..|+++.|.|.+.+ .     +.+.+.|.+++..+... +......+. ...|.|.++...|.|.|.|.+.+..+.
T Consensus         9 ~~~v~~G~~v~l~C~~~~-~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            9 APIVHLGDPITASCIIKQ-NCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             CSEECTTCCEEEEECCCT-TSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CcEEcCCCCEEEEEEECC-CCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            456789999999999998 7     56889999998877543 111111121 157999999999999999988654333


Q ss_pred             ceEEEEEEE
Q psy17205         90 TRQYLELSG   98 (106)
Q Consensus        90 ~~~~~~l~~   98 (106)
                      ......|.+
T Consensus        87 ~~~~~~l~v   95 (313)
T 2d9q_B           87 ILDQVELRA   95 (313)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEcc
Confidence            333455553

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.00  E-value=2.1e-09  Score=58.66  Aligned_cols=69  Identities=12%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             cCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCC-CCE-EEEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         21 RGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTT-ERR-IMET--RG---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~-~~~-~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .|+.+.|.|.+.+..|.+ .+.|++++..+... ... ....  .+   ....|.|..+...|.|.|.|.+.|....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            588999999998723443 89999999877654 100 0000  01   1236899999999999999999997553

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.00  E-value=4.8e-09  Score=59.09  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---EcC-------------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KLD-------------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l~-------------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      .+.+..|+.+.|.|.+.+ .+  .+.+.|+++.  .   .+.             ...++.+...  .....|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~g-~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSG-FSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQT   87 (257)
T ss_dssp             CSEECTTSEEEEEEEEES-SCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCT
T ss_pred             CccccCCceEEEEEEEec-ccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCc
Confidence            346789999999999988 64  6899999852  1   110             1235555442  4466899999999


Q ss_pred             CCCEeeEEEEEcCCC
Q psy17205         74 TDFGNYSCVAENSMG   88 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~   88 (106)
                      .|.|.|.|.+.+..|
T Consensus        88 ~DsG~Y~C~a~n~~g  102 (257)
T 1f3r_B           88 DDTGTYYCTRDLYGG  102 (257)
T ss_dssp             TCCEEEEEEEESSSS
T ss_pred             ccCEEEEEEEccccc
Confidence            999999999998753

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.99  E-value=8.5e-09  Score=58.77  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec-----------C---CCCCEEEEE-cCcEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL-----------D---TTERRIMET-RGRRHTLV   67 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l-----------~---~~~~~~~~~-~~~~~~l~   67 (106)
                      +.+...+..+.+..|+.+.|.|...+ .+.+.+.|++.+  .   .+           .   ...++.+.. ......|.
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLD-FQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESS-SCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCC-CCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            45556677788999999999999988 788899999853  1   00           0   123555544 23466899


Q ss_pred             EcccCCCCCEeeEEEEEcC
Q psy17205         68 IRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.++...|.|.|.|.+.+.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDL  122 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             EccCCccCCEEEEEEEccc
Confidence            9999999999999999984

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.99  E-value=1.2e-09  Score=59.97  Aligned_cols=69  Identities=10%  Similarity=0.050  Sum_probs=50.8

Q ss_pred             CCeEEeecC--CeEEEEEEEeecCCCCeEEEeeC---CEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         14 ERRIIETRG--RRHTLIFFFHFAFCRPQVIWYKE---TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        14 ~~~~~~~~g--~~~~~~c~~~~~~p~p~~~w~~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +..+.+..|  +.+.|.|.+.+  |.+.+.|++.   +..+....++......   .|.|.++...|.|.|.|.+.|..
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~--p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI--SNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS--TTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC---
T ss_pred             ceEEEEecCCCccEEEeeccCC--CCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECC
Confidence            356778889  99999999866  6689999874   5666554443333222   69999999999999999998753

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.99  E-value=1.6e-08  Score=56.79  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=51.4

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeC--CEEc------C-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLKL------D-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~l------~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.+ .+  .+.+.|+++  +..+      .           ...++.+...  .....|.|.++..
T Consensus       144 ~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  222 (256)
T 3ux9_B          144 GLVQPGGSLRLSCAASG-FTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA  222 (256)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEcCCCeEEEEEEEeC-CcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh
Confidence            45778999999999988 66  789999986  2111      1           1124544432  3456799999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.+.
T Consensus       223 ~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          223 EDTAVYYCARYID  235 (256)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hhCEEEEEEEEcC
Confidence            9999999999985

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.99  E-value=4.2e-09  Score=53.49  Aligned_cols=83  Identities=19%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCC----eEEEeeCC----------------EEcCCC----CCEEEEEc--------
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRP----QVIWYKET----------------LKLDTT----ERRIMETR--------   60 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p----~~~w~~~~----------------~~l~~~----~~~~~~~~--------   60 (106)
                      .+..+.+..|+++.|.|.... .+.+    .+.|++..                ..+...    .+..+...        
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~   86 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLP-PVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDT   86 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEES-CCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTC
T ss_pred             cCCeEEEEcCCCEEEEEEeec-CCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEecccccccccc
Confidence            345678889999999999988 6655    78999862                122111    12222111        


Q ss_pred             ---CcEEEEEEcccCCCCCEeeEEEEEc-CCCcceEEEEE
Q psy17205         61 ---GRRHTLVIRKVLFTDFGNYSCVAEN-SMGKTRQYLEL   96 (106)
Q Consensus        61 ---~~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l   96 (106)
                         ....+|.|.++...|.|.|.|.+.+ ..|.......|
T Consensus        87 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L  126 (128)
T 3r0n_A           87 EAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWL  126 (128)
T ss_dssp             CCBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEE
Confidence               1144799999999999999998765 44555554444

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.99  E-value=6.4e-08  Score=53.03  Aligned_cols=76  Identities=22%  Similarity=0.328  Sum_probs=55.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC-------CCCCEEEEEc---CcEEEEEEcccCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD-------TTERRIMETR---GRRHTLVIRKVLFT   74 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~-------~~~~~~~~~~---~~~~~l~~~~~~~~   74 (106)
                      +...+..+.+..|+.+.|.|...+ .. +.+.|++..     ..+.       ...++.+...   .....|.|.+++..
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~   81 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTT-TM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE   81 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESS-CC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeC-CC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHH
Confidence            344566788899999999999987 54 589999743     1110       1235555443   44568999999999


Q ss_pred             CCEeeEEEEEcCC
Q psy17205         75 DFGNYSCVAENSM   87 (106)
Q Consensus        75 ~~g~y~C~~~~~~   87 (106)
                      |.|.|.|.+.+..
T Consensus        82 D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           82 DSGTYFCAADTWH   94 (207)
T ss_dssp             GCEEEEEEEECBC
T ss_pred             HCEEEEEEEecCC
Confidence            9999999998763

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.99  E-value=4.1e-09  Score=52.24  Aligned_cols=83  Identities=18%  Similarity=0.115  Sum_probs=56.5

Q ss_pred             CCeEEeecCCeEEEEEEE-eecCCCCeEEEeeCC-EEcC------------C--CCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFFF-HFAFCRPQVIWYKET-LKLD------------T--TERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~-~~l~------------~--~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      ...+.+..|+++.|.|.. .+ .+.+.+.|++.. ..+.            .  ..++.+.  .....|.|.+++.+|.|
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~-~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG   86 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPL-GPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE--ENNGALHISNVRKEDKG   86 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCC-CSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC--TTTCCEEESSCCGGGCE
T ss_pred             CCCEEEecCCcEEEeCCccCC-CCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe--CCCccEEECCCCcccCe
Confidence            345778899999999998 56 677899999842 1110            0  1233322  13447999999999999


Q ss_pred             eeEEEEEcCCCcceEEEEEEEeC
Q psy17205         78 NYSCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      .|.|.+.+.. .....+.|.+..
T Consensus        87 ~Y~C~v~~~~-~~~~~~~L~V~d  108 (110)
T 2ptt_A           87 TYYMRVLRET-ENELKITLEVFD  108 (110)
T ss_dssp             EEEEEEESSS-BCCEEEEEEEEC
T ss_pred             EEEEEEEcCC-CcEEEEEEEEEc
Confidence            9999998765 233355565543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.99  E-value=1.9e-08  Score=56.52  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=53.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .|.+...+.. .+..|++++|.|...+  +.+.+.|++++..+...... .........|.|.++...|.|.|.|.+.+.
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~--~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY--GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT--TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC--CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            3455555554 6789999999999865  45689999998765310000 000123457999999999999999999775


Q ss_pred             C
Q psy17205         87 M   87 (106)
Q Consensus        87 ~   87 (106)
                      .
T Consensus        83 ~   83 (242)
T 1p6f_A           83 E   83 (242)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.99  E-value=1.3e-08  Score=57.37  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEc------C-----------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKL------D-----------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l------~-----------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|+.+.|.|.+.+ .+  .+.+.|++++  ..+      .           ...++.+...  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~g-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASG-YTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECS-SCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEecc-ccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            34567889999999999987 65  6799999842  111      0           1235555432  3456899999


Q ss_pred             cCCCCCEeeEEEEEcCCC
Q psy17205         71 VLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~~   88 (106)
                      +...|.|.|.|.+.+..|
T Consensus        86 v~~~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYG  103 (256)
T ss_dssp             CCGGGCEEEEEEECCTTS
T ss_pred             CChhhCEEEEEEEeeccC
Confidence            999999999999998755

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.98  E-value=1.2e-09  Score=59.72  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .|+.+.|.|.+.+ .+++  .+.|++++..+......   .....+   ....|.|......|.|.|.|.+.|....
T Consensus       129 ~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          129 STAKATLVCTITD-FYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             TTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             cCCcEEEEEEEEE-EeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            5889999999988 5443  89999999887654111   011111   1235888888888999999999997544

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.98  E-value=1.1e-08  Score=57.55  Aligned_cols=78  Identities=10%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC--EE---c--------------CCCCCEEEEE--cCcEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET--LK---L--------------DTTERRIMET--RGRRH   64 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~--~~---l--------------~~~~~~~~~~--~~~~~   64 (106)
                      +.+......+.+..|+.+.|.|...+ .  +.+.+.|++..  ..   +              ....++.+..  .....
T Consensus         7 ~~~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            7 QVQLVQSGAEVKKPGASVKVSCQASG-YRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             CCEEEECCCEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             eEEEEecCCceecCCCeEEEEEEeec-ccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            44556667788999999999999977 4  57789999732  10   0              0123555543  23456


Q ss_pred             EEEEcccCCCCCEeeEEEEEcC
Q psy17205         65 TLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        65 ~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .|.|.++...|.|.|.|.+.+.
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCC
T ss_pred             EEEECCCCcccCEEEEEeEEec
Confidence            7999999999999999999986

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.98  E-value=1.3e-08  Score=55.55  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecC-------CCCeEEEeeCCEEc-----C------------CCCCEEEEEc--CcEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAF-------CRPQVIWYKETLKL-----D------------TTERRIMETR--GRRHTL   66 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~-------p~p~~~w~~~~~~l-----~------------~~~~~~~~~~--~~~~~l   66 (106)
                      .+..+.+..|+.+.|.|...+ .       +.+.+.|++++...     .            ...++.+...  ....+|
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSY-PWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEEC-CCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             CCcEEEEecCccEEEeeeeec-CCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            345678889999999999876 4       46789999986421     0            1124433221  224479


Q ss_pred             EEcccCCCCCEeeEEEEEcCC
Q psy17205         67 VIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .|.++...|.|.|.|.+.+..
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~  105 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGR  105 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETT
T ss_pred             EEccCCHhhCceEEEEEEcCC
Confidence            999999999999999999865

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.98  E-value=2.1e-09  Score=59.23  Aligned_cols=73  Identities=11%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             eecCCeEEEEEEEeecC-CCC-eEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP-QVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +..|+.+.|.|.+.+ . |.| .+.|++++..+...........+   ....|.|..+...| |.|.|.+.|..+.....
T Consensus       139 ~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~  216 (222)
T 1q9r_B          139 AQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  216 (222)
T ss_dssp             CCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCCcEEEEEEEcc-EECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEE
Confidence            346899999999998 5 888 99999988655321100111111   12358888888888 99999999987765433

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.98  E-value=7.5e-09  Score=51.58  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---CC----------CCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---TT----------ERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---~~----------~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|.... ...+.+.|++..     ..+.   ..          .++........ .|.|.++
T Consensus         4 v~q~p~~~~v~~G~~vtL~C~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~   81 (112)
T 1fo0_B            4 LEQNPRWRLVPRGQAVNLRCILKN-SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESC-TTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEE
T ss_pred             EEeCCCeEEEecCCcEEEEEEeCC-CCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCC
Confidence            344566688889999999999976 677889999742     1111   10          22322222222 7999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        82 ~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           82 NMSQGRTLYCTCSAD   96 (112)
T ss_dssp             SCCSCEEEEEEEESS
T ss_pred             CHhHCEEEEEEEEcC
Confidence            999999999998864

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.98  E-value=1.9e-09  Score=53.65  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             cCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCC-----EEcC-----C----------CCCEEEEEcCcEEEEEEccc
Q psy17205         13 TERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKET-----LKLD-----T----------TERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~-----~~l~-----~----------~~~~~~~~~~~~~~l~~~~~   71 (106)
                      .+..+.+..|+++.|.|... + .+.+.+.|++..     ..+.     .          ..++..........|+|.++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~   83 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKV-KDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGT   83 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTC-SCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSC
T ss_pred             CCceEEEeCCCCEEEEEEccCC-cccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCC
Confidence            34567788999999999987 6 667789998742     1110     0          23555555455678999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        84 ~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           84 REDDGGEYFCGEVEG   98 (111)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhHCEEEEEEEccC
Confidence            999999999999874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.98  E-value=8.8e-09  Score=55.80  Aligned_cols=63  Identities=16%  Similarity=0.106  Sum_probs=45.0

Q ss_pred             cCC-eEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCC-CCCEeeEEEEEcCCCcceEEE
Q psy17205         21 RGR-RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF-TDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        21 ~g~-~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .|. .+.|.|.+.++.|.|.+.|++++..+....           .|.+..... .|.|.|.|.+.|..+.....+
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            454 799999999822478999999987654321           244443334 389999999999988765543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.98  E-value=2.7e-08  Score=54.97  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=52.9

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEcC--------------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKLD--------------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l~--------------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+.+.|.|...+ .+  .+.+.|++..     ..+.              ...++.+...  .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASG-FTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             CCCEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEcCCCcEEEEEEecC-cccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3567889999999999987 55  4789999743     1110              1235555442  23568999999


Q ss_pred             CCCCCEeeEEEEEcCC
Q psy17205         72 LFTDFGNYSCVAENSM   87 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~   87 (106)
                      +..|.|.|.|.+.+..
T Consensus        87 ~~~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFY  102 (223)
T ss_dssp             CGGGCEEEEEEEESSS
T ss_pred             CHHHCEEEEEEEeccc
Confidence            9999999999999864

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.97  E-value=1.8e-08  Score=57.96  Aligned_cols=70  Identities=4%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             CCeEEeecCCeEEEEEEEee------cCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         14 ERRIIETRGRRHTLIFFFHF------AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~------~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +..+.+..|+++.|.|.+.+      +.|.+.+.|++++..+... ++.... +....|.|.++...+ |.|.|.+.+.
T Consensus        11 P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~-~~~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A           11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIIN-RTASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEE-TTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred             cCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeC-CcEEEEEEcCcCCCc-eEEEEecccC
Confidence            34466789999999999985      1477899999999888654 333333 335579999998874 9999999873

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.97  E-value=1.6e-08  Score=56.24  Aligned_cols=73  Identities=18%  Similarity=0.328  Sum_probs=52.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--------------CEEc---CCCCCEEEEE-cCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--------------TLKL---DTTERRIMET-RGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--------------~~~l---~~~~~~~~~~-~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|...+  +.+.+.|++.              +...   ....++.+.. ......|.|.++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS--GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT--TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC--CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            445566788889999999998755  7789999982              1111   1113454443 234568999999


Q ss_pred             CCCCCEeeEEEEE
Q psy17205         72 LFTDFGNYSCVAE   84 (106)
Q Consensus        72 ~~~~~g~y~C~~~   84 (106)
                      ...|.|.|.|.+.
T Consensus        83 ~~~D~G~Y~C~~~   95 (240)
T 3q5y_A           83 ELEDSAMYFCASS   95 (240)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ChhHCEEEEEEEc
Confidence            9999999999997

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.97  E-value=8.8e-09  Score=51.79  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCE----EcCC-C----CCEEEEE-----cCcEEEEEEcccCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETL----KLDT-T----ERRIMET-----RGRRHTLVIRKVLF   73 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~----~l~~-~----~~~~~~~-----~~~~~~l~~~~~~~   73 (106)
                      .+...+..+.+..|+++.|.|...+ . +.+.+.|++.+.    .+.. .    .++....     ......|.|.+++.
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~-~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   87 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTS-LLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTP   87 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESC-CCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCG
T ss_pred             EEECCCceEEEeCCCCEEEEeEECC-CCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCH
Confidence            3445566788999999999999987 4 567899998751    1100 0    0111010     12235799999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.+.
T Consensus        88 ~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           88 EDAGTYYCVKFQK  100 (120)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             HHCEEEEEEEEcC
Confidence            9999999998875

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=98.97  E-value=1.6e-08  Score=51.65  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEE------cC---C-------------CCCEEE-EEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLK------LD---T-------------TERRIM-ETRG   61 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~------l~---~-------------~~~~~~-~~~~   61 (106)
                      +..+...+..+.+..|+++.|.|...+ .....+.||+.  +..      |.   .             ..++.. ....
T Consensus         4 ~~~v~Q~p~~~~v~~G~~vtL~C~~s~-~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~   82 (128)
T 1nez_G            4 APELRIFPKKMDAELGQKVDLVCEVLG-SVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   82 (128)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEES-CCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CCeeEECCCeEEEcCCCCEEEEEEeCc-cCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCC
Confidence            456666777788899999999999977 55578999873  211      10   1             134554 4445


Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ....|.|.+++.+|.|.|.|.+..
T Consensus        83 ~~~~L~I~~~~~~Dsg~YyCa~~~  106 (128)
T 1nez_G           83 NKYVLTLNKFSKENEGYYFCSVIS  106 (128)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHCEEEEEEEcC
Confidence            567899999999999999999875

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.97  E-value=3.2e-08  Score=54.37  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---CC-------------CCCEEEEEc--CcEEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---DT-------------TERRIMETR--GRRHTLVI   68 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~~-------------~~~~~~~~~--~~~~~l~~   68 (106)
                      +..+.+..|+.+.|.|...+ .+  .+.+.|++++  .   .+   ..             ..++.+...  .....|.|
T Consensus         7 p~~~~~~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASG-FTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEES-SCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcC-CccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            34467889999999999987 65  6899999853  1   11   00             235554432  34568999


Q ss_pred             cccCCCCCEeeEEEEEcCC
Q psy17205         69 RKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++...|.|.|.|.+.+..
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~  104 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAV  104 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTT
T ss_pred             ccCCHHHCEEEEEEEecCC
Confidence            9999999999999999864

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.97  E-value=1.1e-08  Score=52.30  Aligned_cols=75  Identities=19%  Similarity=0.250  Sum_probs=51.8

Q ss_pred             ccCCeEEeecCCeEEEEEEEeec------CCCCeEEEeeCCEE------cCC-----------CCCEEEEEc--CcEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFA------FCRPQVIWYKETLK------LDT-----------TERRIMETR--GRRHTL   66 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~------~p~p~~~w~~~~~~------l~~-----------~~~~~~~~~--~~~~~l   66 (106)
                      ..+..+.+..|+.+.|.|.....      .....+.|++....      +..           ..|+.+...  ....+|
T Consensus        11 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   90 (132)
T 1nko_A           11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTL   90 (132)
T ss_dssp             EECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCE
T ss_pred             eCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEE
Confidence            34566888999999999998730      34578999986431      110           134443321  234579


Q ss_pred             EEcccCCCCCEeeEEEEEcC
Q psy17205         67 VIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .|.+++.+|.|.|.|.+.+.
T Consensus        91 ~I~~v~~~DsG~Y~C~v~~~  110 (132)
T 1nko_A           91 SIRDARMSDAGRYFFRMEKG  110 (132)
T ss_dssp             EECSCCGGGCEEEEEEEEET
T ss_pred             EEcccCcccCeeEEEEEEcC
Confidence            99999999999999999874

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.97  E-value=8.4e-08  Score=54.09  Aligned_cols=76  Identities=12%  Similarity=0.065  Sum_probs=53.1

Q ss_pred             EeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEccc---CCCCCE--eeEEEEEcCCCcc
Q psy17205         18 IETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKV---LFTDFG--NYSCVAENSMGKT   90 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---~~~~~g--~y~C~~~~~~~~~   90 (106)
                      .+..|+.+.|.|.+.+..|.|  .+.|++++..+...    ....+.  .+.+..+   ...|.|  .|.|.+.|..+..
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~   87 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQ   87 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----EeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCc
Confidence            567899999999998734555  99999999877651    222121  2333333   667777  5999999988877


Q ss_pred             eEEEEEEEe
Q psy17205         91 RQYLELSGK   99 (106)
Q Consensus        91 ~~~~~l~~~   99 (106)
                      .....|.+.
T Consensus        88 ~~~~~l~V~   96 (265)
T 2oz4_A           88 ETLQTVTIY   96 (265)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            666666654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.96  E-value=2.3e-08  Score=55.39  Aligned_cols=72  Identities=10%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c---C-----------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L---D-----------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l---~-----------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|+++.|.|...+ .+  .+.+.|++..  ..   +   .           ...++.+...  .....|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASG-YTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEEcCCCCEEEEEEecC-CccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            44567889999999999988 66  6889999853  11   1   0           1235554432  3466899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      ++..|.|.|.|.+.+.
T Consensus        86 v~~~D~G~Y~C~~~~~  101 (227)
T 1mju_H           86 LTSDDSAVYYCANKLG  101 (227)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCcccCEEEEEEECCC
Confidence            9999999999999875

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.96  E-value=2.2e-09  Score=58.63  Aligned_cols=70  Identities=13%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             cCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEE--EE--cC---cEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         21 RGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIM--ET--RG---RRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~--~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      .|+.+.|.|.+.+..|.+ .+.|++++..+........  ..  .+   ....|.|.++...|.|.|.|.+.|.....
T Consensus       126 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          126 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            588999999998723444 8999999987765410000  00  00   12379999999999999999999976553

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.96  E-value=2e-08  Score=56.74  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEE------------cCC---C-CCEEEEE-cCcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLK------------LDT---T-ERRIMET-RGRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~------------l~~---~-~~~~~~~-~~~~~~l~~~   69 (106)
                      .+...+..+.+..|+++.|.|....  +.+.+.|++.  +..            ...   . .++.+.. ......|.|.
T Consensus        28 ~v~~~p~~v~v~~G~~v~L~C~~~~--~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           28 GVSQTPSNKVTEKGKYVELRCDPIS--GHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SCBCCCSEEEEETTCCEEEEEBCBT--TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             eeEeCCCEEEecCCCCEEEEEEeCC--CCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            3445566788899999999998754  7789999982  111            000   0 3444433 2335689999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      +++..|.|.|.|.+.+.
T Consensus       106 ~v~~~D~G~Y~C~~~~~  122 (268)
T 3pl6_D          106 RTERGDSAVYLCATSAL  122 (268)
T ss_dssp             SCCGGGCEEEEEEEESS
T ss_pred             CCCcccCEEEEEEEecC
Confidence            99999999999999973

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.96  E-value=2.1e-09  Score=58.87  Aligned_cols=74  Identities=8%  Similarity=0.138  Sum_probs=47.3

Q ss_pred             ecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCE--EEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         20 TRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERR--IMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~--~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ..++.+.|.|.+.+..|.+ .+.|++++..+......  .....+.   ...|.+......|.|.|.|.+.|..+.....
T Consensus       134 ~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  213 (218)
T 3s96_B          134 LKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKS  213 (218)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEE
T ss_pred             ccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccc
Confidence            3568899999998733566 89999999887652111  0000111   1247777777778999999999987654433

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.96  E-value=1.5e-08  Score=60.76  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeC--CEEcC-----------------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLKLD-----------------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~l~-----------------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ....+..|+.+.|.|.+.+ .|  .+.+.|+++  +..+.                 ...++.....  .....|.|.++
T Consensus       226 ~~~~v~~G~~v~L~C~~~g-~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  304 (438)
T 1qgc_4          226 GGGLVKPGGSLKLSCTASG-FIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSL  304 (438)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEecCCcEEEEEEEcc-cccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCC
Confidence            3466788999999999998 77  679999986  32221                 1234544432  33568999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      ...|.|.|.|.+.|.
T Consensus       305 ~~~D~G~Y~C~a~n~  319 (438)
T 1qgc_4          305 RSADTAMYYCVRRED  319 (438)
T ss_dssp             CGGGCCEEEEEECCS
T ss_pred             ChhhCEEEEEEEEcc
Confidence            999999999999984

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.96  E-value=1.9e-09  Score=59.40  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=51.2

Q ss_pred             eecCCeEEEEEEEeecC---CC-CeEEEeeCCEEcCCCCCEEEEEc-----CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAF---CR-PQVIWYKETLKLDTTERRIMETR-----GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~---p~-p~~~w~~~~~~l~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+ .   |. +.+.|++++..+...........     .....|.|.++...|.|.|.|.+.+..+.
T Consensus        23 v~~G~~v~L~C~~~g-~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           23 LMISLTPKVTCVVVD-VSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             HCTTSCCEEEEEEEE-ECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             hccCCCeeEEEEEcC-CccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            678999999999998 6   33 78999999976653211100000     11346899999999999999999987654


Q ss_pred             c
Q psy17205         90 T   90 (106)
Q Consensus        90 ~   90 (106)
                      .
T Consensus       102 ~  102 (218)
T 2rgs_A          102 S  102 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.96  E-value=1.9e-09  Score=58.90  Aligned_cols=73  Identities=12%  Similarity=0.252  Sum_probs=51.1

Q ss_pred             cCCeEEEEEEEeecCC--CCeEEEeeCCEEcCCCCCE---EEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         21 RGRRHTLIFFFHFAFC--RPQVIWYKETLKLDTTERR---IMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p--~p~~~w~~~~~~l~~~~~~---~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .|+.+.|.|.+.+ .+  .+.+.|++++..+......   .....+   ....|.+..+...|.|.|.|.+.|..+...+
T Consensus       125 ~g~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          125 QANKATLVCLISD-FYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             HTTCEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             cCCCeEEEEEeee-ecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            5899999999988 53  4789999999877542100   000011   1235888888888899999999998765554


Q ss_pred             EE
Q psy17205         93 YL   94 (106)
Q Consensus        93 ~~   94 (106)
                      .+
T Consensus       204 ~~  205 (211)
T 3tv3_L          204 TV  205 (211)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.96  E-value=1.1e-07  Score=48.20  Aligned_cols=88  Identities=13%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCE-----Ec-C-C-------CCCEEEEE--cCcEEEEEEcccCCCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETL-----KL-D-T-------TERRIMET--RGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~-----~l-~-~-------~~~~~~~~--~~~~~~l~~~~~~~~~~   76 (106)
                      +..+.+..|+.+.|.|.... .. ...+.|++...     .+ . .       ..++.+..  ......|+|.+++.+|.
T Consensus         9 p~~v~~~~G~svtL~C~~s~-~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Ds   87 (124)
T 2nms_A            9 PTTVNGLERGSLTVQCVYRS-GWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDA   87 (124)
T ss_dssp             CSEEEEETTCCEEEEEEECT-TCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ccEEEEeCCCCEEEEeEEeC-CcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHC
Confidence            45677889999999999876 43 33689987631     11 1 0       12344332  23467899999999999


Q ss_pred             EeeEEEEEcCCCcceEEEEEEEeCCC
Q psy17205         77 GNYSCVAENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        77 g~y~C~~~~~~~~~~~~~~l~~~~~~  102 (106)
                      |.|.|.+..........+.|.+.+.+
T Consensus        88 g~Y~C~~~~~~~~~~~~v~L~V~~~~  113 (124)
T 2nms_A           88 DTYWCGIEKTGNDLGVTVQVTIDPAP  113 (124)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEEEEEcCCCCccEEEEEEEeCCC
Confidence            99999998754323334566655543

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.96  E-value=7.4e-09  Score=51.76  Aligned_cols=72  Identities=19%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             cCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCE--------EcC--------------CCCCEEEEE--cCcEEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETL--------KLD--------------TTERRIMET--RGRRHTLV   67 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~--------~l~--------------~~~~~~~~~--~~~~~~l~   67 (106)
                      .+..+.+..|+++.|.|...+ . ....+.|++...        .+.              ...++.+..  ......|+
T Consensus         4 ~p~~~~~~~G~~vtL~C~~~~-~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (115)
T 2atp_B            4 TPSSLLVQTNHTAKMSCEVKS-ISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCS-SCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             CCCCEEEcCCCcEEEEEEecC-CCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEE
Confidence            455677889999999999976 4 567899987531        110              123555554  34456899


Q ss_pred             EcccCCCCCEeeEEEEEc
Q psy17205         68 IRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+++.+|.|.|.|.+..
T Consensus        83 I~~~~~~DsG~Y~C~~~~  100 (115)
T 2atp_B           83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ECCCCHHHCEEEEEeEcc
Confidence            999999999999999875

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.96  E-value=1.7e-07  Score=46.95  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=54.6

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC--E---Ec----------CCCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET--L---KL----------DTTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~--~---~l----------~~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+.+.|.|.... .. ...+.|++..  .   .+          ....++....  ......|.|.+++.
T Consensus         4 q~p~~~~v~~G~~vtL~C~~~~-~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~   82 (117)
T 3bp6_A            4 FYPAWLTVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR   82 (117)
T ss_dssp             EECSEEEECTTCCEEEEEEESS-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred             ecCCcEEEeCCCCEEEEeEeec-CCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcCCCCEEEEEECcCCH
Confidence            4456678889999999999976 43 4789998742  1   11          1123555543  34567899999999


Q ss_pred             CCCEeeEEEEEcCC
Q psy17205         74 TDFGNYSCVAENSM   87 (106)
Q Consensus        74 ~~~g~y~C~~~~~~   87 (106)
                      +|.|.|.|.+.+..
T Consensus        83 ~Dsg~Y~C~~~~~~   96 (117)
T 3bp6_A           83 NDSGIYLCGAISLH   96 (117)
T ss_dssp             GGCEEEEEEEEECS
T ss_pred             HHCEEEEEEEEecC
Confidence            99999999988643

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.95  E-value=1.1e-08  Score=58.40  Aligned_cols=76  Identities=13%  Similarity=0.178  Sum_probs=55.9

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E--E-cC--------------CCCCEEEEE--cCcEEEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L--K-LD--------------TTERRIMET--RGRRHTLVI   68 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~--~-l~--------------~~~~~~~~~--~~~~~~l~~   68 (106)
                      ..+..+.+..|+++.|.|...+ .+  .+.+.|++++  .  . +.              ...++....  ......|.|
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I  109 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASG-FNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL  109 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred             ECCCCEEEeCCCeEEEEEeccC-CCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence            3455677889999999999987 64  5899999853  1  1 00              123555443  234568999


Q ss_pred             cccCCCCCEeeEEEEEcCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .++...|.|.|.|.+.+..|
T Consensus       110 ~~v~~~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          110 SSLTSEDTAVYYCNEGTPTG  129 (282)
T ss_dssp             CSCCGGGCEEEEEEEECSSS
T ss_pred             CcCChhhCEEEEEEeccCCC
Confidence            99999999999999998765

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.95  E-value=1.3e-08  Score=56.41  Aligned_cols=73  Identities=18%  Similarity=0.190  Sum_probs=52.8

Q ss_pred             CeEEeecCCeEEEEEEEeecCCC----CeEEEeeCC--EEc---C-------------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCR----PQVIWYKET--LKL---D-------------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~--~~l---~-------------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      ..+.+..|+.+.|.|...+ .+.    +.+.|++..  ..+   .             ...++.+...  .....|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSG-FSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             CCSEECTTCCEEEEEEEES-SCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CceeecCCCeEEEEEEEeC-cccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            3467789999999999988 664    889998742  111   0             1134444432  2356899999


Q ss_pred             cCCCCCEeeEEEEEcCCC
Q psy17205         71 VLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~~   88 (106)
                      ++..|.|.|.|.+.+..|
T Consensus        87 v~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           87 VDTADTATYYCARRGFYG  104 (228)
T ss_dssp             CCGGGCEEEEEEEEEEST
T ss_pred             CCcccCEEEEEEEecCCC
Confidence            999999999999988653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.95  E-value=2.8e-08  Score=56.28  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=52.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEE-EEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+...+. ..+..|++++|.|.+.+  +.+.+.|++++..+....... .........|.|.++...|.|.|.|.+.+
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~--~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV--RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS--CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC--CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            345555554 55779999999999865  567899999875432110000 00012345799999999999999999975


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        84 ~   84 (257)
T 1b6u_A           84 T   84 (257)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.95  E-value=1.7e-08  Score=51.23  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccCCCCCE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g   77 (106)
                      +..+.+..|+++.|.|...+ ..  ...+.|++..     ..+.         ...++..........|+|.+++.+|.|
T Consensus         7 p~~v~v~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG   85 (123)
T 3t0v_A            7 SPSVSGTPGQKVTIFCSGSS-SNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRSEDEA   85 (123)
T ss_dssp             CCCEEECTTCCEEEEEECCT-TTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCeEEEcCCCCEEEEEecCC-CccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCHHHCE
Confidence            34678889999999999977 54  4689999742     1111         123555554456778999999999999


Q ss_pred             eeEEEEEcC
Q psy17205         78 NYSCVAENS   86 (106)
Q Consensus        78 ~y~C~~~~~   86 (106)
                      .|.|.+.+.
T Consensus        86 ~Y~C~~~~~   94 (123)
T 3t0v_A           86 DYYCLSWDD   94 (123)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEEcC
Confidence            999999864

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.95  E-value=6.1e-09  Score=52.71  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCC---CeEEEeeCCEEcC--------C----------CCCEEEEE---cCcEEEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCR---PQVIWYKETLKLD--------T----------TERRIMET---RGRRHTLVI   68 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~---p~~~w~~~~~~l~--------~----------~~~~~~~~---~~~~~~l~~   68 (106)
                      .+..+.+..|+++.|.|...+ .+.   ..+.|++......        .          ..|+.+..   .....+|.|
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~-~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   84 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRG-DSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   84 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECC-CTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeC-CccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEE
Confidence            345678889999999999876 543   3578987532100        0          01222111   122457999


Q ss_pred             cccCCCCCEeeEEEEEc-CCCcceEEEEEEE
Q psy17205         69 RKVLFTDFGNYSCVAEN-SMGKTRQYLELSG   98 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~~   98 (106)
                      .++...|.|.|.|.+.+ ..|.....+.|.+
T Consensus        85 ~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~V  115 (123)
T 4gjt_B           85 RNAVQADEGEYECRVSTFPAGSFQARLRLRV  115 (123)
T ss_dssp             ESCCSSSCSEEEEEEEESSSCEEEEEEEEEC
T ss_pred             CCCChHHCEEEEEEEEECCCCeEEeEEEEEE
Confidence            99999999999999876 4555556666653

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.95  E-value=3.5e-08  Score=54.84  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=51.3

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeC--CEEc------C-----------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLKL------D-----------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~l------~-----------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +....+..|+.+.|.|.+.+ .+  .+.+.|+++  +..+      .           ...++.....  .....|.|.+
T Consensus       126 ~~~~~v~~G~~v~L~C~~~g-~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  204 (240)
T 1moe_A          126 SGAELVEPGASVKLSCTASG-FNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS  204 (240)
T ss_dssp             CCCEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCceEEeCCCcEEEEEEEcC-ccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECc
Confidence            44566788999999999998 76  469999985  2111      0           1224444332  3456799999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +...|.|.|.|.+..
T Consensus       205 v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          205 LTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCHHHCEEEEEEEEe
Confidence            999999999999984

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.95  E-value=1.3e-09  Score=67.62  Aligned_cols=82  Identities=17%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             CeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCC------------CCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205         15 RRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDT------------TERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~------------~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      ..+.+..|+++.|.|.. .+ .|.+.+.|++++..+..            ..+......   .+|.|.++...|.|.|.|
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~i~~v~~~D~G~Y~C  449 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPK-KPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN---GSLFLPAVGIQDEGIFRC  449 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCS-SSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT---SCEEESSCCGGGCEEEEE
T ss_pred             cccceecCCcEEEeeeecCC-CCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC---ceEEEeccccccCeEEEE
Confidence            34677899999999999 66 88999999987642211            112222222   269999999999999999


Q ss_pred             EEEcCCCcc-eEEEEEEEeC
Q psy17205         82 VAENSMGKT-RQYLELSGKY  100 (106)
Q Consensus        82 ~~~~~~~~~-~~~~~l~~~~  100 (106)
                      .+.+..+.. ...+.|.+..
T Consensus       450 ~~~n~~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          450 QAMNRNGKETKSNYRVRVYQ  469 (581)
T ss_dssp             EEECTTSCEEEEEEEEEEEB
T ss_pred             EEEcCCCceeEEEEEEEEEc
Confidence            999988776 4556665433

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.95  E-value=1.4e-08  Score=52.31  Aligned_cols=75  Identities=19%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCC-----EEcC---------CCCCEEEEEcCcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKET-----LKLD---------TTERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~-----~~l~---------~~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      +..++ .+.+.+|+++.|.|.... .+   ...+.||+..     ..+.         ...++..........|+|.+++
T Consensus         9 v~q~~-~v~v~~G~~vtL~C~~~~-~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~   86 (135)
T 1p4b_L            9 VTQES-ALTTSPGETVTLTCRSST-GAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   86 (135)
T ss_dssp             EECCS-EEEECTTCEEEEEEEETT-SSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCC
T ss_pred             EEECC-cEEEcCCCCEEEEEEecC-CCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCC
Confidence            33433 488889999999999976 54   5679998742     1111         1245655544556789999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        87 ~~DsG~Y~C~~~~~  100 (135)
T 1p4b_L           87 TEDEAIYFCALWYS  100 (135)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             hhHCEEEEEEEecC
Confidence            99999999999865

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.95  E-value=3.7e-08  Score=55.83  Aligned_cols=73  Identities=10%  Similarity=0.084  Sum_probs=54.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-----------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-----------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-----------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|+++.|.|...+ .+  .+.+.|++..  .   .+   .           ...++.+...  .....|.|.+
T Consensus        13 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASG-YSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEEcCCCCEEEEEEeCC-cccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            45677889999999999988 66  6889999763  1   11   0           1235554432  3456899999


Q ss_pred             cCCCCCEeeEEEEEcCC
Q psy17205         71 VLFTDFGNYSCVAENSM   87 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~   87 (106)
                      ++..|.|.|.|.+.+..
T Consensus        92 v~~~DsG~Y~C~~~~~~  108 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYV  108 (261)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             CCcccCeEEEEEEecCC
Confidence            99999999999999853

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.95  E-value=7e-09  Score=59.23  Aligned_cols=77  Identities=17%  Similarity=0.159  Sum_probs=55.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEcC------------CCCCEEEEEcCcEEEEEEcccC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKLD------------TTERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l~------------~~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      .+...+. +.+..|+++.|.|...+ ..  .+.+.|++..  ..+.            ...++..........|.|.++.
T Consensus       142 ~v~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  219 (280)
T 3fku_X          142 GLTQPPS-VSKGLRQTATLTCTGNS-NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQ  219 (280)
T ss_dssp             SBBCCSE-EEECTTCCEEEEEECCC-CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCC
T ss_pred             EEEeCCc-EEEecCCCEEEEEEecC-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCC
Confidence            3444444 77889999999999977 43  4789998732  1111            1235555555566789999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus       220 ~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          220 PEDEADYYCSTWDSS  234 (280)
T ss_dssp             GGGCSEEEEEEEETT
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999998864

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.94  E-value=1.3e-08  Score=56.84  Aligned_cols=75  Identities=12%  Similarity=0.065  Sum_probs=53.1

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEc-------C---------CCCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKL-------D---------TTERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l-------~---------~~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      ..+..|+.+.|.|.+.+ .+  .+.+.|++..  ..+       .         ...++....  ......|.|.++...
T Consensus       132 ~~v~~G~~v~L~C~~~g-~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~  210 (242)
T 2znx_A          132 SLVKPSQTLSLTCSVTG-DSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE  210 (242)
T ss_dssp             SEECTTSCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceecCCCeEEEEEEEEc-cccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcC
Confidence            34778999999999988 65  5789999842  211       0         123444433  234568999999999


Q ss_pred             CCEeeEEEEEcC--CCcceE
Q psy17205         75 DFGNYSCVAENS--MGKTRQ   92 (106)
Q Consensus        75 ~~g~y~C~~~~~--~~~~~~   92 (106)
                      |.|.|.|.+.+.  +|....
T Consensus       211 D~G~Y~C~a~~~~~fG~gt~  230 (242)
T 2znx_A          211 DTATYYCANXDGDYXGQGTL  230 (242)
T ss_dssp             GCEEEEEEETTSSCBCCCEE
T ss_pred             cCEEEEEeccCCcccCCCeE
Confidence            999999999983  455443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.94  E-value=1.4e-08  Score=57.02  Aligned_cols=76  Identities=12%  Similarity=0.063  Sum_probs=53.8

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec--------------CCCCCEEEEEc--CcEEEEEEc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL--------------DTTERRIMETR--GRRHTLVIR   69 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l--------------~~~~~~~~~~~--~~~~~l~~~   69 (106)
                      .+..+.+..|+.+.|.|.+.+ .+  .+.+.|++..  .   .+              ....++.+...  .....|.|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~g-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            7 QSGAELVKPGASVRLSCTASG-FNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             ECCCEEECTTCCEEEEEEECS-SCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCeeecCCCcEEEEEEeeC-CcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            344577889999999999877 54  6789999821  1   01              01234544432  335679999


Q ss_pred             ccCCCCCEeeEEEEEcCCCc
Q psy17205         70 KVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ++...|.|.|.|.+.+..+.
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~  105 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFA  105 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCC
T ss_pred             CCCcccCEEEEEEEeeCCcc
Confidence            99999999999999985443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.93  E-value=1.2e-08  Score=54.79  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeC-CEEc---C---------CC--CCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE-TLKL---D---------TT--ERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~-~~~l---~---------~~--~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      ...+.+..|+++.|.|......+.+.+.|++. +..+   .         ..  .++.+  .....+|.|.++...|.|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeE
Confidence            34577889999999998744135789999984 2211   0         11  23333  1123469999999999999


Q ss_pred             eEEEEEcCCCcceEEEEEEEeCC
Q psy17205         79 YSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        79 y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.|.+.+.. .....+.|.+..+
T Consensus        84 Y~C~v~~~~-~~~~~~~L~V~~~  105 (180)
T 2dru_A           84 YYMRMLHET-EDQWKITMEVYEM  105 (180)
T ss_dssp             EEEEEESSS-EEEEEEEEEEECC
T ss_pred             EEEEEEcCC-eEEEEEEEEEECC
Confidence            999998765 4445566665443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.92  E-value=1.9e-08  Score=55.22  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEc---C-------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKL---D-------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l---~-------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      ..+.+..|+.+.|.|...+ .+  .+.+.|++..  ..+   .             ...++.+...  .....|.|.++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSG-FPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ   86 (215)
T ss_dssp             CCCEECTTCCEEEEEEECS-SCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred             CCeeecCCCcEEEEEEECC-CcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence            3467789999999999987 54  5789999752  111   0             1134444432  245689999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      ..|.|.|.|.+.+..
T Consensus        87 ~~D~G~Y~C~~~~~~  101 (215)
T 1c5d_H           87 TEDTAIYFCTREDGW  101 (215)
T ss_dssp             GGGCEEEEEEECCSS
T ss_pred             cccCEEEEEEEecCC
Confidence            999999999998863

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.92  E-value=3.1e-08  Score=56.11  Aligned_cols=72  Identities=13%  Similarity=0.075  Sum_probs=53.1

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-----------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-----------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-----------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+.+.|.|...+ .+  .+.+.|++..  .   .+   .           ...++.+...  .....|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASG-FTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLR   87 (257)
T ss_dssp             CEEECTTCEEEEEEEEES-SCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CEEEcCCCcEEEEEEecc-ccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCC
Confidence            467889999999999987 65  6789998753  1   11   0           1235554432  346689999999


Q ss_pred             CCCCEeeEEEEEcCCC
Q psy17205         73 FTDFGNYSCVAENSMG   88 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~   88 (106)
                      ..|.|.|.|.+.+..+
T Consensus        88 ~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           88 AEDTAVYYCARPYLTY  103 (257)
T ss_dssp             GGGCEEEEEEEECCSS
T ss_pred             hhhCEEEEEEEecCCC
Confidence            9999999999998654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.92  E-value=1.1e-10  Score=63.81  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             ecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCCCEE-EEEc----CcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         20 TRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTERRI-METR----GRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~~~-~~~~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ..|+.+.|.|.+.+ . |. +.+.|++++..+....... ....    .....|.|.++...|.|.|.|.+.|..+..
T Consensus       126 ~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          126 LRTNKATLVCLVND-FYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             HHTTEECCCEEEEE-EBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             ccCCceEEEEEEEe-eECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            46889999999998 6 54 7999999998776432100 0000    012348888998899999999999986553

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.92  E-value=7.1e-09  Score=56.82  Aligned_cols=71  Identities=11%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             cCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEE--EEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         21 RGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRI--MET--RG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~--~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .|+.+.|.|.+.+..|.+ .+.|++++..+.......  ...  .+   ....|.|..+...|.|.|.|.+.|......
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            488999999998823444 899999998776541000  000  01   122688888888999999999999764433

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.92  E-value=2.9e-09  Score=59.04  Aligned_cols=75  Identities=12%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             eecCCeEEEEEEEeecC-CCC-eEEEeeCCEEcCC--CCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP-QVIWYKETLKLDT--TERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~~--~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..|+.+.|.|.+.+ . |.+ .+.|++++..+..  .....  ..+   ....|.+..+...| |.|.|.+.|..+...
T Consensus       133 ~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  208 (227)
T 1mju_H          133 DTSGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK  208 (227)
T ss_dssp             -----CEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEE
T ss_pred             ccCCCcEEEEEEeec-EeCCCeEEEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcc
Confidence            346899999999998 5 666 9999998865421  11111  111   12368888888777 999999999765544


Q ss_pred             EEEEEE
Q psy17205         92 QYLELS   97 (106)
Q Consensus        92 ~~~~l~   97 (106)
                      ....+.
T Consensus       209 ~~~~~~  214 (227)
T 1mju_H          209 VDKKIE  214 (227)
T ss_dssp             EEEECC
T ss_pred             eEEEeC
Confidence            444444

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.91  E-value=5.9e-09  Score=61.24  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .+..|+.+.|.|.+.+ .|.|.+.|++++..+       ...   ...|.|.++...|.|.|.|.+.+..+.....+.+.
T Consensus       107 ~v~~G~~v~l~C~~~~-~p~~~v~W~~~~~~~-------~~~---~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~  175 (363)
T 1wio_A          107 HLLQGQSLTLTLESPP-GSSPSVQCRSPRGKN-------IQG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV  175 (363)
T ss_dssp             SEESBSCEEEEEECCT-TCCCCEEEECSSSCE-------EEE---SSEEEECSBCGGGCEECEEEEEETTEEEEECCEEC
T ss_pred             EEecCCCEEEEEEcCC-CCCCeEEEEcCCCcc-------ccc---ceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEE
Confidence            4568999999999999 899999999886432       111   23799999999999999999998755544444444


Q ss_pred             Ee
Q psy17205         98 GK   99 (106)
Q Consensus        98 ~~   99 (106)
                      +.
T Consensus       176 v~  177 (363)
T 1wio_A          176 VL  177 (363)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.91  E-value=4.9e-08  Score=47.71  Aligned_cols=76  Identities=22%  Similarity=0.270  Sum_probs=56.0

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCC----EEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKET----LKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~----~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ...+..|+.+.|.|+..+-.+.|.+.|-+-+    ..|..... ....  +.....|.+..+..+|.|.|.|.+....|.
T Consensus        20 ~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q-~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~   98 (120)
T 2aw2_A           20 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQT-SWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL   98 (120)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCE-EEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccc-cceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCc
Confidence            3567889999999999882378999997654    45554321 1112  223457999999999999999999988776


Q ss_pred             ceE
Q psy17205         90 TRQ   92 (106)
Q Consensus        90 ~~~   92 (106)
                      ..+
T Consensus        99 ieS  101 (120)
T 2aw2_A           99 IES  101 (120)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            554

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.91  E-value=1.2e-09  Score=63.06  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+...+. ..+..|+.+.|.|.+.+ . .+.+.|++++..+......    ......|.|.++...|.|.|.|.+.+
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~-~~~~~W~k~g~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~~   95 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRH-R-FNNFMLYKEDRIHIPIFHG----RIFQESFNMSPVTTAHAGNYTCRGSH   95 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTT-B-CCSEEEEESSCSSSCHHHH----CCBSSCEEECSCCGGGCEEEEEEEBC
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccC-C-CceEEEEeCCCccceeecC----CcceEEEEECCCCcccCeEEEEEEEc
Confidence            355555554 45679999999999988 5 6789999998765431000    01133699999999999999999875

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.91  E-value=1.7e-08  Score=50.45  Aligned_cols=76  Identities=16%  Similarity=0.103  Sum_probs=53.8

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CE-----Ec----------CC---CCCEEEEEcCcEEEEEEcc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TL-----KL----------DT---TERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~-----~l----------~~---~~~~~~~~~~~~~~l~~~~   70 (106)
                      ...+..+.+..|++++|.|..........+.|++.  +.     .+          ..   ..++..........|+|.+
T Consensus         4 ~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~   83 (114)
T 2hp4_A            4 RVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLSD   83 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEESS
T ss_pred             EeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEECC
Confidence            34455677889999999999976123568999863  22     11          00   2355544445567899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      ++.+|.|.|.|.+.+.
T Consensus        84 ~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           84 FRRENEGYYFCSALSN   99 (114)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999998864

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.91  E-value=6.7e-09  Score=51.69  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---C------CCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---T------TERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---~------~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      ...+..+.+..|+.+.|.|...+ ...+.+.|++..     ..+.   .      ..++....  ......|+|.+++.+
T Consensus         4 ~q~p~~~~~~~G~~v~L~C~~~~-~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~   82 (112)
T 2z35_A            4 TQTGGQVALSEEDFLTIHCNYSA-SGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (112)
T ss_dssp             ECSCSEEEEETTCCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred             EeCCCcEEEcCCCCEEEEEEECC-CCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChh
Confidence            44566788899999999999988 677889998753     1111   0      12343321  223457999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |.|.|.|.+.
T Consensus        83 DsG~Y~C~~~   92 (112)
T 2z35_A           83 DSAVYYCALS   92 (112)
T ss_dssp             TCSEEEEEEE
T ss_pred             hCEEEEEEEE
Confidence            9999999988

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.91  E-value=1.3e-09  Score=58.37  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEE--cCC------------CCCEEEEE---cCcEEEEEEcccCCCCCEe
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLK--LDT------------TERRIMET---RGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~--l~~------------~~~~~~~~---~~~~~~l~~~~~~~~~~g~   78 (106)
                      .+.+..|+.+.|.|...+ .+.+.+.|++++..  +..            ..++....   ......|.|.++...|.|.
T Consensus         4 ~v~~~~G~~v~L~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQ-KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             EEEEETTSCEEECCBCSS-SSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             cEEEeCCCCEEEEEEEcC-CCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            467789999999999988 88899999998742  210            01111111   1124469999999999999


Q ss_pred             eEEEEEcCCC
Q psy17205         79 YSCVAENSMG   88 (106)
Q Consensus        79 y~C~~~~~~~   88 (106)
                      |.|.+.+..+
T Consensus        83 Y~C~~~~~~~   92 (184)
T 2ny1_B           83 YICEVEDQKE   92 (184)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEEEcCCC
Confidence            9999988644

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.90  E-value=2e-08  Score=56.08  Aligned_cols=69  Identities=16%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEc------C-----------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKL------D-----------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l------~-----------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.+ .+  .+.+.|++++  ..+      .           ...++....  ......|.|.++..
T Consensus       137 ~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  215 (247)
T 1svz_A          137 ELKKPGETVKISCKATN-YAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN  215 (247)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEEcC-cccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence            45788999999999988 64  5789999853  111      0           123444433  23456899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.|.
T Consensus       216 ~DsG~Y~C~a~n~  228 (247)
T 1svz_A          216 EDTATYFCVRDRH  228 (247)
T ss_dssp             GGCEEEEEEEEEG
T ss_pred             hHCEEEEEEEecc
Confidence            9999999999984

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.90  E-value=1.1e-08  Score=56.62  Aligned_cols=71  Identities=10%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             cCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCCC-C-EEEE--EcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         21 RGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTTE-R-RIME--TRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~~-~-~~~~--~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      .|+.+.|.|.+.+..| .+.+.|++++..+.... . ....  ..+   ....|.+......|.|.|.|.+.|......
T Consensus       149 ~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          149 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             HHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             cCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence            4778999999988234 47999999998776431 0 0000  001   123588888888899999999999865443

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.90  E-value=7.1e-09  Score=56.60  Aligned_cols=64  Identities=14%  Similarity=0.059  Sum_probs=46.7

Q ss_pred             eecCCeEEEEEEEeecC----CCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAF----CRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~----p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+ .    |.|.+.|++++..+... +.     .....|.|..+...|.|.|.|.+.|..+.
T Consensus       135 ~~~G~~v~L~C~~~~-~~~~~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~  202 (214)
T 2zg1_A          135 LESGRPTRLSCSLPG-SCEAGPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPEDHGTNLTCQMKRQGAQ  202 (214)
T ss_dssp             CCTTCCEEEEEECTT-CCSCSSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred             ccCCCeEEEEEEecc-CCCCCCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence            457999999999976 4    78899999987543221 11     12336889999888999999999997544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.90  E-value=1.3e-07  Score=51.97  Aligned_cols=70  Identities=16%  Similarity=0.169  Sum_probs=50.9

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-------------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-------------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-------------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      .+.+..|+++.|.|...+ .+  .+.+.|++..  .   .+   .             ...++.+...  .....|.|.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASG-FTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             CEEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CEEEcCCCCEEEEEEccc-ccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            466889999999999986 44  5789998742  1   01   0             1235544432  3466799999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      +...|.|.|.|.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGD  103 (221)
T ss_dssp             CCGGGCEEEEEEEESC
T ss_pred             CCHHHCEEEEEEEECC
Confidence            9999999999999875

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.90  E-value=1.5e-08  Score=51.52  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=53.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecC---CCCeEEEeeCC-----EEc-C------------CCCCEEEEE--cCcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAF---CRPQVIWYKET-----LKL-D------------TTERRIMET--RGRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~---p~p~~~w~~~~-----~~l-~------------~~~~~~~~~--~~~~~~l~~~~   70 (106)
                      +..+.+..|+.+.|.|...+ .   ....+.|++..     ..+ .            ...++....  ......|.|.+
T Consensus         7 p~~v~v~~G~~vtL~C~~s~-~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~   85 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRN-DHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISE   85 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECT-TSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCEEECCCCCEEEEEEecC-CCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECC
Confidence            34677889999999999977 4   24679998742     111 0            023555442  24466899999


Q ss_pred             cCCCCCEeeEEEEEcCCCcc
Q psy17205         71 VLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ++.+|.|.|.|.+.+..+..
T Consensus        86 ~~~~DsG~Y~C~~~~~~~~~  105 (126)
T 2h32_A           86 LQPEDEAMYYCAMGARSSEK  105 (126)
T ss_dssp             CCGGGCEEEEEEEECSCCCC
T ss_pred             CChhHCEEEEEEEEcCCCCc
Confidence            99999999999998765443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.90  E-value=4.7e-09  Score=60.74  Aligned_cols=90  Identities=20%  Similarity=0.173  Sum_probs=56.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC----CCCeEEEeeCC--E-------------Ec--CCCCCEEEE-EcCcEEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF----CRPQVIWYKET--L-------------KL--DTTERRIME-TRGRRHTL   66 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~----p~p~~~w~~~~--~-------------~l--~~~~~~~~~-~~~~~~~l   66 (106)
                      .+...+..+.+..|+.+.|.|...+ .    +.+.+.|++++  .             .+  ....++.+. .......|
T Consensus        16 ~~~~~~~~~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L   94 (331)
T 3u83_A           16 QVVQVNDSMYGFIGTDVVLHCSFAN-PLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI   94 (331)
T ss_dssp             -----CEEEEEETTCCEEECCBCSS-CCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred             ceEEcCCcEEEEecCCEEEeeecCC-CCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence            3344555688889999999999887 5    44579999853  1             11  112233322 11223469


Q ss_pred             EEcccCCCCCEeeEEEE-EcCCCcceEEEEEEEe
Q psy17205         67 VIRKVLFTDFGNYSCVA-ENSMGKTRQYLELSGK   99 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~-~~~~~~~~~~~~l~~~   99 (106)
                      .|.++...|.|.|.|.+ .+..+.....+.|.+.
T Consensus        95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~  128 (331)
T 3u83_A           95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVM  128 (331)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEcccCcccCcEEEEEEEecCCCccEEEEEEEEe
Confidence            99999999999999984 4555555555555543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.89  E-value=2.8e-09  Score=58.21  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=49.0

Q ss_pred             eecCCeEEEEEEEeecC-CCC-eEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP-QVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +..|+.+.|.|.+.+ . |.| .+.|++++..+...........+   ....|.|......+ |.|.|.+.|..+....
T Consensus       130 ~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          130 AQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             CCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             cccCCcEEEEEEEee-EecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            357899999999998 6 878 99999988654211000011111   12358888887766 9999999998776543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.89  E-value=8.6e-09  Score=57.78  Aligned_cols=69  Identities=14%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCC-CC-EEEEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTT-ER-RIMET--RG---RRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~-~~-~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      .|+.+.|.|.+.+ .++  +.+.|++++..+... .. .....  .+   ....|.|.++...|.|.|.|.+.|.....
T Consensus       168 ~g~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          168 TSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             HTTEEEEEEEEEE-EBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEec-ccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            4779999999987 544  359999998776554 00 00000  00   13479999999999999999999976543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.88  E-value=7.6e-09  Score=56.57  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=50.4

Q ss_pred             eecCCeEEEEEEEeecCC----CCeEEEeeCCEEcCCCCCE-EEEEc----CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAFC----RPQVIWYKETLKLDTTERR-IMETR----GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p----~p~~~w~~~~~~l~~~~~~-~~~~~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+ .+    ...+.|++++..+...... .....    .....|.|.++...|.|.|.|.+.+..+.
T Consensus        15 v~~G~~v~L~C~~~g-~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           15 LTITLTPKVTCVVVD-ISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             HSTTSCCEEEEEEEE-ECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             hccCCceEEEEEEeC-cccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            678999999999998 64    2489999998765432100 00000    11236899999999999999999998765


Q ss_pred             c
Q psy17205         90 T   90 (106)
Q Consensus        90 ~   90 (106)
                      .
T Consensus        94 ~   94 (207)
T 2vol_A           94 A   94 (207)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.88  E-value=3e-08  Score=55.35  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             ecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCC----CE---EEEEc--C---cEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         20 TRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTE----RR---IMETR--G---RRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~----~~---~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..|..+.|.|.+.+..|.| .+.|++++..+....    ..   .....  +   ....|.+......|.|.|.|.+.|.
T Consensus       131 ~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~  210 (248)
T 3pv7_A          131 MKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA  210 (248)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECT
T ss_pred             ccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECC
Confidence            4567788999998745778 999999885433210    00   01111  1   1235777888888999999999998


Q ss_pred             CCcceE
Q psy17205         87 MGKTRQ   92 (106)
Q Consensus        87 ~~~~~~   92 (106)
                      .+....
T Consensus       211 ~~~~~~  216 (248)
T 3pv7_A          211 SLHTPL  216 (248)
T ss_dssp             TCSSCE
T ss_pred             CCCCCc
Confidence            776443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.87  E-value=9.4e-08  Score=60.88  Aligned_cols=84  Identities=17%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCCEEcCCCCCEEEE--------EcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKETLKLDTTERRIME--------TRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~~l~~~~~~~~~--------~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+.+..|+.+.|.|.+.+ .+  .+.+.|++++..+.........        .......|.|.++...|.|.|.|.+.|
T Consensus       233 ~~~v~~G~~v~L~C~~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~  311 (772)
T 3v2a_R          233 GIELSVGEKLVLNCTART-ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS  311 (772)
T ss_dssp             CEEEETTCCEEEEEEEEE-CTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEEC
T ss_pred             ceEEecCCcEEEEEEEec-CCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEc
Confidence            367889999999999987 54  4589999988765443222110        011244799999999999999999999


Q ss_pred             CCCcceEEEEEEEeC
Q psy17205         86 SMGKTRQYLELSGKY  100 (106)
Q Consensus        86 ~~~~~~~~~~l~~~~  100 (106)
                      ..+.....+.|.+..
T Consensus       312 ~~~~~~~~~~l~V~~  326 (772)
T 3v2a_R          312 GLMTKKNSTFVRVHE  326 (772)
T ss_dssp             SSCEEEEEEEEEEEC
T ss_pred             CCcceeEEEEEEEeC
Confidence            887766666666443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.87  E-value=8.6e-08  Score=53.40  Aligned_cols=74  Identities=14%  Similarity=0.245  Sum_probs=53.3

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec------------CCCCCEEEEE-cCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL------------DTTERRIMET-RGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l------------~~~~~~~~~~-~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+.+.|.|....  +.+.+.|++..  .   .+            ....++.+.. ......|.|.+++.
T Consensus         4 q~p~~v~v~~G~~v~L~C~~~~--~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            4 QSPRNKVAVTGGKVTLSCQQTN--NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EECSEEEEETTCCEEEEEEESS--CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             cCCCeeEEeCCCcEEEEEEeCC--CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            4456678899999999999844  67899999853  1   11            0123443332 13456899999999


Q ss_pred             CCCEeeEEEEEcCC
Q psy17205         74 TDFGNYSCVAENSM   87 (106)
Q Consensus        74 ~~~g~y~C~~~~~~   87 (106)
                      .|.|.|.|.+.+..
T Consensus        82 ~D~G~Y~C~~~~~~   95 (238)
T 1bec_A           82 SQTSVYFCASGGGR   95 (238)
T ss_dssp             GGCEEEEEEEESCT
T ss_pred             ccCEEEEEEEecCC
Confidence            99999999999863

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.87  E-value=1.1e-08  Score=55.82  Aligned_cols=80  Identities=9%  Similarity=-0.082  Sum_probs=50.6

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ....+....+.|...++.|.+.+.|++++..+...........+   ....|.|..+...|.|.|.|.+.|..+......
T Consensus       132 ~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~  211 (225)
T 4fmk_A          132 TIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILL  211 (225)
T ss_dssp             CCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred             eecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEE
Confidence            34456667777766553788899998876433211100000011   123599999999999999999999887765544


Q ss_pred             EEE
Q psy17205         95 ELS   97 (106)
Q Consensus        95 ~l~   97 (106)
                      .+.
T Consensus       212 ~v~  214 (225)
T 4fmk_A          212 PVT  214 (225)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.87  E-value=9.6e-08  Score=53.66  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc-------------CCCCCEEEEEc--CcEEEEEEcc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL-------------DTTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l-------------~~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      .+..+.+..|+.+.|.|.+.+ .+  .+.+.|++..     ..+             ....++.+...  .....|.|.+
T Consensus        14 ~p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   92 (257)
T 3gkz_A           14 ESGPSLVKPSQTLSLTCSVTG-DSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS   92 (257)
T ss_dssp             EECCSEECTTCCEEEEEEEEE-SCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEEcCCCcEEEEEEEEc-ccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence            344466889999999999988 54  6799999832     111             11234544432  3456799999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      +...|.|.|.|.+.+.
T Consensus        93 v~~~DsG~Y~C~~~n~  108 (257)
T 3gkz_A           93 VSSEDTATYYCSYFDS  108 (257)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             CChhhCEEEEEEEecC
Confidence            9999999999999986

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.87  E-value=2.6e-07  Score=46.85  Aligned_cols=77  Identities=12%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC------------CCCCEEEEE-cCcEEEEEEcc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD------------TTERRIMET-RGRRHTLVIRK   70 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~------------~~~~~~~~~-~~~~~~l~~~~   70 (106)
                      .+...+..+.+..|+++.|.|.... .....+.|++..     ..+.            ...++.... ......|+|.+
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~   85 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTN-SYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILEL   85 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEES-CCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETT
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECC-CCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECC
Confidence            4556677788889999999999987 555589998742     1110            112443332 24577899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      ++.+|+|.|.|.+...
T Consensus        86 ~~~~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           86 ATPSQTSVYFCASGGG  101 (125)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CChhhCEEEEEEEcCC
Confidence            9999999999998753

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.87  E-value=5.2e-08  Score=51.05  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=54.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeC-----CE---EcC-----------C---CCCEEEE--EcCcE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKE-----TL---KLD-----------T---TERRIME--TRGRR   63 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~-----~~---~l~-----------~---~~~~~~~--~~~~~   63 (106)
                      .+...+..+.+..|+.+.|.|...+ . ....+.|++.     +.   .|.           .   ..++.+.  .....
T Consensus         3 ~v~Q~p~~~~v~~G~svtL~C~~s~-~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~   81 (150)
T 3dmm_D            3 ALIQTPSSLLVQTNHTAKMSCEVKS-ISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRR   81 (150)
T ss_dssp             -CEEECSEEEEETTSCEEEEEECCC-SSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSS
T ss_pred             ccEECCCeEEEeCCCcEEEEEEecC-CCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCE
Confidence            4455667788899999999999876 4 4567999874     21   110           0   2344444  22345


Q ss_pred             EEEEEcccCCCCCEeeEEEEEcC
Q psy17205         64 HTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        64 ~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..|.|.+++.+|.|.|.|.+...
T Consensus        82 ~sL~I~~l~~~Dsg~Y~C~~~~~  104 (150)
T 3dmm_D           82 PFLSIMNVKPEDSDFYFCATVGS  104 (150)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEEECCCChhhCEEEEEEEecC
Confidence            68999999999999999998753

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.87  E-value=1e-07  Score=58.02  Aligned_cols=76  Identities=9%  Similarity=0.133  Sum_probs=54.5

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---cC--------------CCCCEEEEEc--CcEEEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---LD--------------TTERRIMETR--GRRHTLVI   68 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l~--------------~~~~~~~~~~--~~~~~l~~   68 (106)
                      ..+..+.+..|+.+.|.|...+ .+  .+.+.|++..  ..   +.              ...++.+...  .....|.|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASG-YSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecC-CCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            3455678889999999999987 54  5789999852  11   10              1124443332  23568999


Q ss_pred             cccCCCCCEeeEEEEEcCCC
Q psy17205         69 RKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .++...|.|.|.|.+.+..+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~  104 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGG  104 (475)
T ss_pred             CCCChhhCEEEEEEEeccCC
Confidence            99999999999999998754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.86  E-value=5.7e-08  Score=58.76  Aligned_cols=73  Identities=10%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec--------------CCCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL--------------DTTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l--------------~~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+.+.|.|...+ .+  .+.+.|++..  .   .+              ....++.+...  .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            8 GAEVKKPGASVKVSCQASG-YRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCEEECTTCCEEECEEEES-SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CceEEcCCCCEEEEEEecC-ccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            3467889999999999988 66  6789999742  1   11              01235554432  34568999999


Q ss_pred             CCCCCEeeEEEEEcCCC
Q psy17205         72 LFTDFGNYSCVAENSMG   88 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~   88 (106)
                      ...|.|.|.|.+.+..+
T Consensus        87 ~~~D~G~Y~C~~~~~~~  103 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYS  103 (457)
T ss_dssp             CGGGCEEEEEEECCCCC
T ss_pred             CcccCEEEEEEEecCCc
Confidence            99999999999998754

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.85  E-value=1.4e-07  Score=52.43  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=50.9

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---C----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---D----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      .+.+..|+++.|.|...+ .+  .+.+.|++..     ..+   .          ...++.+...  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYG-GSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA   87 (232)
T ss_dssp             CCEECTTSCEEEEEEEES-SCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEEcc-ccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence            457789999999999987 54  5789999742     111   0          1235555432  3466899999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      .|.|.|.|.+.+
T Consensus        88 ~D~G~Y~C~~~~   99 (232)
T 1dn0_B           88 ADTAVYYCARPP   99 (232)
T ss_dssp             GGCEEEEEEECS
T ss_pred             ccCEEEEEEEec
Confidence            999999999983

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.85  E-value=5.4e-08  Score=48.04  Aligned_cols=76  Identities=11%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+...+.. .+..|++++|.|....  ....+.|++++..+..  ..............|.|..+...|.|.|.|...+
T Consensus        10 PsL~a~P~~-vv~~G~~VtL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~~   86 (106)
T 3kgr_A           10 PSISAEPGT-VIPLGSHVTFVCRGPV--GVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYYK   86 (106)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEEECT--TCCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEeCCC-ccCCCCeEEEEEEccC--CCcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEeeC
Confidence            445444443 5678999999998865  3457889998753311  1111111112245799999999999999999876


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        87 ~   87 (106)
T 3kgr_A           87 P   87 (106)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.85  E-value=1.2e-08  Score=56.10  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=50.0

Q ss_pred             eecCCeEEEEEEEeecC-CCC-eEEEeeCCEEcC--CCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP-QVIWYKETLKLD--TTERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~--~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +..|+.+.|.|.+.+ . |.| .+.|++++....  ........ .......|.+......+ |.|.|.+.|..+...+.
T Consensus       137 ~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKG-YFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             CSCSSSEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCCCcEEEEEEEEE-EeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            357899999999998 6 888 999998875310  00001000 00112358888877756 99999999998876655


Q ss_pred             EE
Q psy17205         94 LE   95 (106)
Q Consensus        94 ~~   95 (106)
                      +.
T Consensus       215 ~~  216 (220)
T 1pz5_B          215 KE  216 (220)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.84  E-value=5.9e-08  Score=53.59  Aligned_cols=74  Identities=8%  Similarity=0.100  Sum_probs=49.5

Q ss_pred             ecCCeEEEEEEEeecC-CCC-eEEEee-CCEEcCCCC-CEEEEEcC---cEEEEEEcccCC--CCCEeeEEEEEcCCCcc
Q psy17205         20 TRGRRHTLIFFFHFAF-CRP-QVIWYK-ETLKLDTTE-RRIMETRG---RRHTLVIRKVLF--TDFGNYSCVAENSMGKT   90 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~p-~~~w~~-~~~~l~~~~-~~~~~~~~---~~~~l~~~~~~~--~~~g~y~C~~~~~~~~~   90 (106)
                      ..|+.+.|.|.+.+ . |.| .+.|++ ++..+.... .......+   ....|.+.....  .|.|.|.|.+.|..+..
T Consensus       139 ~~g~~v~L~C~~~g-~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          139 NPSSTVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             CSSSEEEEEEEEEE-EBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             CCCCcEEEEEEEEE-EeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            47889999999998 5 777 999999 877664300 00000111   122577766665  67899999999988776


Q ss_pred             eEEE
Q psy17205         91 RQYL   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ...+
T Consensus       218 ~~~~  221 (223)
T 1dee_B          218 EKDV  221 (223)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            5443

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.84  E-value=6.5e-08  Score=48.31  Aligned_cols=70  Identities=19%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             eEEeecCCeEEEEEEEeecC---CCCeEEEeeCC-----EEcC-------------CCCCEEEEEcC--cEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAF---CRPQVIWYKET-----LKLD-------------TTERRIMETRG--RRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~---p~p~~~w~~~~-----~~l~-------------~~~~~~~~~~~--~~~~l~~~~~~   72 (106)
                      .+.+..|+++.|.|.... .   ....+.|++..     ..+.             ...++......  ....|+|.+++
T Consensus         7 ~~~~~~G~~v~L~C~~~~-~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~   85 (116)
T 3bj9_1            7 AMSSALGTTIRLTCTLRN-DHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQ   85 (116)
T ss_dssp             EEEEETTCCEEEEEEECS-SSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCC
T ss_pred             cEEEcCCCcEEEEEEeec-CccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCC
Confidence            578889999999999876 3   45689998742     1110             12344444322  24589999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        86 ~~DsG~Y~C~~~~~   99 (116)
T 3bj9_1           86 PEDEAMYYCAMGAR   99 (116)
T ss_dssp             GGGCEEEEEEECCS
T ss_pred             hhHCEEEEEEEeCC
Confidence            99999999999865

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.84  E-value=1.5e-08  Score=60.96  Aligned_cols=71  Identities=10%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             eecCCeEEEEEEEeecCC----CCeEEEeeCCEEcCCCCCE--EEEEc---CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAFC----RPQVIWYKETLKLDTTERR--IMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p----~p~~~w~~~~~~l~~~~~~--~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+ .+    .+.+.|++++..+......  .....   .....|.|.++...|.|.|.|.+.|..+.
T Consensus       252 ~~~G~~~~L~C~~~g-~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~  330 (444)
T 1igt_B          252 LMISLSPIVTCVVVD-VSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP  330 (444)
T ss_dssp             HCTTSCCEEEEEEEE-ECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred             eecCCCcEEEEEEee-cccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCC
Confidence            367999999999998 73    3699999999877543211  11111   12347999999999999999999998776


Q ss_pred             c
Q psy17205         90 T   90 (106)
Q Consensus        90 ~   90 (106)
                      .
T Consensus       331 ~  331 (444)
T 1igt_B          331 A  331 (444)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.84  E-value=1.1e-08  Score=53.11  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC-----EEc---C--C-----CCCEEEE--EcCcEEEEEEcccC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET-----LKL---D--T-----TERRIME--TRGRRHTLVIRKVL   72 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~-----~~l---~--~-----~~~~~~~--~~~~~~~l~~~~~~   72 (106)
                      ...+..+.+..|+.+.|.|.... .. ...+.|++..     ..+   .  .     ..++...  .......|+|.+++
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~   82 (142)
T 2ol3_A            4 TQTQTSISVMEKTTVTMDCVYET-QDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   82 (142)
T ss_dssp             BCCCSEEEEETTCCEEECCBCCC-CCSSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCC
T ss_pred             EecCCeEEEecCCCEEEEEEecC-CcCCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCC
Confidence            34466688889999999999876 54 4589998742     111   0  0     1234332  12334579999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|.|.|.|.+.+
T Consensus        83 ~~Dsg~Y~C~~~~   95 (142)
T 2ol3_A           83 IEDSAVYFCAMRG   95 (142)
T ss_dssp             TTTCEEEEEEEEC
T ss_pred             hhhCEEEEEEEEc
Confidence            9999999999986

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.82  E-value=6.5e-08  Score=54.78  Aligned_cols=76  Identities=22%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---cC-C-C----------C-CEEEEE-cCcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---LD-T-T----------E-RRIMET-RGRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l~-~-~----------~-~~~~~~-~~~~~~l~~~   69 (106)
                      .+...+..+.+..|+.+.|.|...+  +.+.+.|++..  ..   +. . .          . ++.... ......|.|.
T Consensus        29 ~v~~~p~~v~v~~G~~v~L~C~~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~  106 (270)
T 3qib_D           29 KVIQTPRYLVKGQGQKAKMRCIPEK--GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ  106 (270)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCT--TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred             eEEeCCCeEEEcCCCCEEEEEEecC--CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence            4445566788899999999998754  67899999821  10   00 0 0          0 232221 2335689999


Q ss_pred             ccCCCCCEeeEEEEEcC
Q psy17205         70 KVLFTDFGNYSCVAENS   86 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~   86 (106)
                      +++..|.|.|.|.+.+.
T Consensus       107 ~v~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D          107 SSEAGDSALYLCASSLN  123 (270)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             CCCHhHCeEEEEEEecC
Confidence            99999999999999863

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.82  E-value=2.2e-08  Score=50.42  Aligned_cols=72  Identities=21%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC----CCeEEEeeCC----EEcCC-----CCCEEEEE-----cCcEEEEEEcccCCC
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC----RPQVIWYKET----LKLDT-----TERRIMET-----RGRRHTLVIRKVLFT   74 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p----~p~~~w~~~~----~~l~~-----~~~~~~~~-----~~~~~~l~~~~~~~~   74 (106)
                      .+..+.+..|+++.|.|.... .+    ...+.|++..    ..+..     ..++....     .....+|+|.+++..
T Consensus        13 ~p~~v~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~   91 (120)
T 3noi_A           13 QPPEIRTLEGSSAFLPCSFNA-SQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGH   91 (120)
T ss_dssp             CCSEEEEETTSCEEECCEECC-CTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGG
T ss_pred             CCCEEEEEcCCCEEEEeeecC-CCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChh
Confidence            345678889999999999987 55    4579999864    22221     12333221     223457999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.|.|.|.+..
T Consensus        92 DsG~Y~C~v~~  102 (120)
T 3noi_A           92 DASIYVCRVEV  102 (120)
T ss_dssp             GCEEEEEEEEE
T ss_pred             hCEEEEEEEEE
Confidence            99999999874

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.82  E-value=1.1e-07  Score=57.24  Aligned_cols=73  Identities=15%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEcC-----------------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKLD-----------------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l~-----------------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+.+.|.|...+ .+  .+.+.|+++.  ..+.                 ...++.+...  .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            8 GGGLVQPGGSLKLSCATSG-FTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             CCCEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEcCCCCEEEEEEcCC-CccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            3467889999999999987 54  5789998752  2110                 1235554432  34568999999


Q ss_pred             CCCCCEeeEEEEEcCCC
Q psy17205         72 LFTDFGNYSCVAENSMG   88 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~   88 (106)
                      ...|.|.|.|.+.+..+
T Consensus        87 ~~~D~G~Y~C~~~~~~~  103 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYY  103 (444)
T ss_dssp             CGGGCEEEEEEEECSSS
T ss_pred             CHHHCEEEEEEEecCCc
Confidence            99999999999998654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.81  E-value=1.2e-07  Score=53.33  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec--------------CCCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL--------------DTTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l--------------~~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+++.|.|...+ .+  .+.+.|++..  .   .+              ....++.+...  .....|.|.++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           11 LELVKPGASVKISCKTSG-YTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             ceEEcCCCCEEEEEEEec-ccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            356889999999999987 66  6899998732  1   11              01234544432  345679999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      ..|.|.|.|.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~  103 (256)
T 3umt_A           90 SEDSAVYYCARDDR  103 (256)
T ss_dssp             GGGCEEEEEEECCS
T ss_pred             cccCEEEEEEEccC
Confidence            99999999999886

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.81  E-value=8.9e-09  Score=56.54  Aligned_cols=74  Identities=12%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             eecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +..|+.+.|.|.+.++.|.| .+.|++++..+...........+   ....|.+.... .|.|.|.|.+.|..+.....
T Consensus       136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~  213 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVD  213 (219)
T ss_dssp             SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEE
T ss_pred             cccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEE
Confidence            35799999999998745788 99999998654211000000001   12257774433 36699999999987665433

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.81  E-value=4.6e-08  Score=53.93  Aligned_cols=72  Identities=14%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             eecCCeEEEEEEEeecC-CC--CeEEEeeCCEEcCC-CCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         19 ETRGRRHTLIFFFHFAF-CR--PQVIWYKETLKLDT-TERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~--p~~~w~~~~~~l~~-~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..|+.+.|.|.+.+ . |.  +.+.|++++..+.. .........+.   ...|.+......|.|.|.|.+.|..+...
T Consensus       134 ~~~g~~v~L~C~~~g-~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          134 ALSSDPVIIGCLIHD-YFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SSCCSSEEEEEEEEE-EBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ccCCCcEEEEEEEEe-EECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            356889999999998 5 65  69999998755411 00000001111   12488888888899999999999877654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.81  E-value=3.7e-07  Score=50.90  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=55.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEcC---------CCCCEEEEE--cCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKLD---------TTERRIMET--RGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l~---------~~~~~~~~~--~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|...+ .+  ...+.|++..     ..+.         ...++.+..  ......|.|.++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~-~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   82 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKG-EAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECS-SCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecC-CccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence            344566788899999999999986 43  4689998742     1110         124565543  245678999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +..|.|.|.|.+.+.
T Consensus        83 ~~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           83 SERDEGSYYCACDTL   97 (229)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CHhHCeEEEEEEecC
Confidence            999999999999875

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.81  E-value=1.7e-09  Score=59.83  Aligned_cols=73  Identities=12%  Similarity=0.242  Sum_probs=51.0

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE---EEEEc---CcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR---IMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~---~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .|+.+.|.|.+.+ .++  +.+.|++++..+......   .....   .....|.|..+...|.|.|.|.+.|......+
T Consensus       149 ~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  227 (234)
T 2j6e_L          149 QANKATLVCLISD-FFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  227 (234)
T ss_dssp             TTSCCCEEECCCB-CSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCE
T ss_pred             cCCceEEEEEEEE-EcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEE
Confidence            5789999999988 544  389999999887643110   00000   11246888888889999999999998765444


Q ss_pred             EE
Q psy17205         93 YL   94 (106)
Q Consensus        93 ~~   94 (106)
                      .+
T Consensus       228 ~~  229 (234)
T 2j6e_L          228 TV  229 (234)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.80  E-value=3e-07  Score=46.51  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCCE------EcC--------CCCCEEEEE--cCcEEEEEEcccC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKETL------KLD--------TTERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~------~l~--------~~~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      ...+..+.+..|+++.|.|.... ..  ...+.|++...      .+.        ...|+.+..  ......|+|.+++
T Consensus        14 ~~~~~~v~~~~G~svtL~C~~s~-~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~   92 (122)
T 1hkf_A           14 QSKAQVLQSVAGQTLTVRCQYPP-TGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLR   92 (122)
T ss_dssp             -CCCEEEEECTTCCEEEEEECCC-CTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCC
T ss_pred             ccCCceEEEecCCCEEEEeEccC-CCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCC
Confidence            34556678889999999999875 32  35789987531      111        123555432  3456789999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      .+|.|.|.|.+....
T Consensus        93 ~~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           93 EEDSGHYWCRIYRPS  107 (122)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             HHHCEEEEEEEEcCC
Confidence            999999999998753

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.80  E-value=1.5e-08  Score=56.75  Aligned_cols=71  Identities=8%  Similarity=0.097  Sum_probs=50.4

Q ss_pred             eecCCeEEEEEEEeecC---CCC-eEEEeeCCEEcCCCCC-EEEEEc----CcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAF---CRP-QVIWYKETLKLDTTER-RIMETR----GRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~---p~p-~~~w~~~~~~l~~~~~-~~~~~~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+.|.|.+.+ .   |.+ .+.|++++..+..... ......    .....|.|..+...|.|.|.|.+.+..+.
T Consensus        29 v~~G~~v~L~C~~~g-~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVD-ISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             TTSSSCCEEEEEEEE-ECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cccCCcEEEEEEEec-CccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            568999999999998 6   666 8999998755432100 000000    12346899999999999999999998765


Q ss_pred             c
Q psy17205         90 T   90 (106)
Q Consensus        90 ~   90 (106)
                      .
T Consensus       108 ~  108 (239)
T 1i1c_A          108 A  108 (239)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.80  E-value=1.9e-07  Score=52.93  Aligned_cols=69  Identities=10%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--E---EcC----C----------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--L---KLD----T----------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~---~l~----~----------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|...+ .+.  +.+.|+++.  .   .+.    .          ..++.+..  ......|.|.++..
T Consensus       148 ~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  226 (264)
T 2gjj_A          148 EVVKTGASVKISCKASG-YSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS  226 (264)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEcCCCcEEEEEEEeC-CccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc
Confidence            45778999999999998 653  799999863  1   110    0          22443332  23456899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|.|.|.|.+.|.
T Consensus       227 ~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          227 EDSADYYCVRSGN  239 (264)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999985

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=98.80  E-value=2.9e-07  Score=46.47  Aligned_cols=75  Identities=12%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---C---------CCCEEEEEc-CcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---T---------TERRIMETR-GRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---~---------~~~~~~~~~-~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+++.|.|...  .....+.|++..     ..+.   .         ..++..... .....|.|.++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~~--~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v   81 (121)
T 2oi9_C            4 VTQSPRNKVAVTGEKVTLSCNQT--NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENFSLTLESA   81 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES--SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEECCSSSEEEEEESSC
T ss_pred             eEeCCCeEEecCCCcEEEEEEec--CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEcCCCCEEEEEECCC
Confidence            34456678888999999999953  346789998742     1110   0         134444322 23568999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        82 ~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           82 TPSQTSVYFCASGGG   96 (121)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CHHHCEEEEEEEccC
Confidence            999999999999864

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.80  E-value=2.9e-08  Score=54.15  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             ecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC--CEEEEE--cC---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         20 TRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE--RRIMET--RG---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~--~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      ..|+.+.|.|.+.+ .++  +.+.|++++..+....  ......  .+   ....|.+......|.|.|.|.+.|....
T Consensus       125 ~~~~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          125 LGTGSATLVCFVNN-FYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             HTTTEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cCCCCcEEEEEEee-ecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            35778999999998 554  3899999998776531  000000  01   1225777777778899999999997543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.79  E-value=9.8e-09  Score=57.11  Aligned_cols=77  Identities=9%  Similarity=0.053  Sum_probs=52.9

Q ss_pred             cCCeEEeecCCeEEEEEEEeecC-CC-C-eEEEeeCCEEc-CCCCCEEEEE-cC---cEEEEEEcccCCCCCEeeEEEEE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAF-CR-P-QVIWYKETLKL-DTTERRIMET-RG---RRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~-p~-p-~~~w~~~~~~l-~~~~~~~~~~-~~---~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+....+..|+.+.|.|.+.+ . |. | .+.|++++..+ .......... .+   ....|.|.++...|.|.|.|.+.
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g-~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVN-LPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEE-ESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             CcChhhcccCCceEEEEEEeC-ccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            343444568999999999988 5 53 5 99999988766 3222211111 11   13368999998899999999999


Q ss_pred             cCCCcc
Q psy17205         85 NSMGKT   90 (106)
Q Consensus        85 ~~~~~~   90 (106)
                      +..+..
T Consensus        98 ~~~~~~  103 (231)
T 2w59_A           98 HEELPL  103 (231)
T ss_dssp             CTTCSS
T ss_pred             cCCCCC
Confidence            876543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.79  E-value=3.5e-08  Score=54.65  Aligned_cols=73  Identities=12%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             eecCCeEEEEEEEeecC-CCC-eEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         19 ETRGRRHTLIFFFHFAF-CRP-QVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      +..|+.+.|.|.+.+ . |.| .+.|++++..+...........+   ....|.|......+ |.|.|.+.|..+.....
T Consensus       142 ~~~g~~~~l~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~  219 (228)
T 3bae_H          142 DTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVD  219 (228)
T ss_dssp             --CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             ccCCCCEEEEEEEcc-EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEE
Confidence            357899999999998 5 777 99999987643211101111111   12357888877755 99999999987665433

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.79  E-value=5.6e-08  Score=53.98  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC-----EEcC-------------CCCCEEEEEc--CcEEEEE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET-----LKLD-------------TTERRIMETR--GRRHTLV   67 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~-----~~l~-------------~~~~~~~~~~--~~~~~l~   67 (106)
                      +...+..+.+..|+.+.|.|...+ .  +.+.+.|++..     ..+.             ...++.+...  .....|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFI-ESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECC-GGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeec-cccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEE
Confidence            445566788899999999999977 4  56789998742     1110             1234444332  2456899


Q ss_pred             EcccCCCCCEeeEEEEEcC
Q psy17205         68 IRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+++..|.|.|.|.+.+.
T Consensus        83 I~~v~~~D~G~Y~C~~~~~  101 (230)
T 1ypz_F           83 IYSLEEEDEAIYYCSYGEG  101 (230)
T ss_dssp             ECSCCGGGCSEEEEEECCT
T ss_pred             ECcCChhhCEEEEEEEECC
Confidence            9999999999999999874

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.79  E-value=1.4e-07  Score=52.51  Aligned_cols=77  Identities=8%  Similarity=0.081  Sum_probs=49.0

Q ss_pred             cC-CeEEEEEEEeecCCCC-eEEEee-CCEEcCCCC-CEEEEEcC---cEEEEEEcccCC--CCCEeeEEEEEcCCCcce
Q psy17205         21 RG-RRHTLIFFFHFAFCRP-QVIWYK-ETLKLDTTE-RRIMETRG---RRHTLVIRKVLF--TDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        21 ~g-~~~~~~c~~~~~~p~p-~~~w~~-~~~~l~~~~-~~~~~~~~---~~~~l~~~~~~~--~~~g~y~C~~~~~~~~~~   91 (106)
                      .| +.+.|.|.+.+..|.+ .+.|++ ++..+.... .......+   ....|.+.....  .|.|.|.|.+.|..+...
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~  218 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE  218 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcc
Confidence            67 8999999999823776 999999 877664300 00000111   123578877775  678999999999887765


Q ss_pred             EEEEEE
Q psy17205         92 QYLELS   97 (106)
Q Consensus        92 ~~~~l~   97 (106)
                      ....+.
T Consensus       219 ~~~~i~  224 (232)
T 1dn0_B          219 KNVPLP  224 (232)
T ss_dssp             EEEECC
T ss_pred             eeEecC
Confidence            544444

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.78  E-value=4e-07  Score=50.15  Aligned_cols=76  Identities=20%  Similarity=0.347  Sum_probs=54.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc-C--C------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL-D--T------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l-~--~------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.+.|.|...+ .....+.|++..     ..+ .  .      ..|+....  ......|.|.+++.
T Consensus         6 v~Q~p~~~~v~~G~svtL~C~~s~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   84 (210)
T 2eys_A            6 VEQSPQSLIILEGKNCTLQCNYTV-SPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   84 (210)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECC-SSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EEEeCCEEEEecCCCEEEEEEECC-CCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence            445566788899999999999987 666789998742     111 1  1      12444332  23456899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.|.|.|.+.+.
T Consensus        85 ~Dsg~Y~C~~~~~   97 (210)
T 2eys_A           85 SDSASYICVVSDR   97 (210)
T ss_dssp             GGCEEEEEEEESC
T ss_pred             ccCceEEEEEEcc
Confidence            9999999999873

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.78  E-value=1.9e-07  Score=51.15  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=53.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC---C------CCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD---T------TERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~---~------~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      ...+..+.+..|+.+.|.|...+ .....+.|++..  .   .+.   .      ..|+....  ......|.|.+++..
T Consensus         4 ~q~p~~v~v~~G~~v~L~C~~s~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   82 (203)
T 2bnu_A            4 TQIPAALSVPEGENLVLNCSFTD-SAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (203)
T ss_dssp             EEECSEEEEETTCCEEEEEEESC-CCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             EEcCCEEEEeCCCCEEEEEEECC-CCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence            34466788899999999999977 555689998742  1   111   0      13444432  234568999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        83 Dsg~Y~C~~~~~   94 (203)
T 2bnu_A           83 DSATYLCAVRPT   94 (203)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cCeEEEEEEEcC
Confidence            999999999863

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=98.78  E-value=3.5e-07  Score=45.92  Aligned_cols=71  Identities=14%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---C-----------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---D-----------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~-----------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+++.|.|...+ ..  ...+.|++..     ..+   .           ...++.....  .....|+|.++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 1n4x_H            8 GPELKKPGETVKISCKATN-YAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNL   86 (120)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCEEEcCCCeEEEEEEecC-cccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            3467889999999999875 43  4679998753     111   0           1135555432  34678999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           87 KNEDTATYFCVRDRH  101 (120)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CHHHCEEEEEEEEcc
Confidence            999999999999864

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.77  E-value=1.6e-07  Score=53.21  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---c----------------CCCCCEEEEEc--CcEEEEEEcc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---L----------------DTTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l----------------~~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      ...+..|+.+.|.|...+ .+  .+.+.|++..  ..   +                ....++.....  .....|.|.+
T Consensus       160 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  238 (268)
T 1x9q_A          160 GGLVQPGGAMKLSCVTSG-FTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNN  238 (268)
T ss_dssp             CEEECTTCCEEEEEEEES-SCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             ceEecCCCcEEEEEEecC-ccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECC
Confidence            456788999999999988 65  3789999752  11   1                01234544432  2356799999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      +...|.|.|.|.+.+.
T Consensus       239 v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          239 LRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHHHCEEEEEEEccC
Confidence            9999999999999874

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.77  E-value=7.9e-09  Score=52.24  Aligned_cols=83  Identities=19%  Similarity=0.134  Sum_probs=54.0

Q ss_pred             eEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCE-EcC-------------CCCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205         16 RIIETRGRRHTLIFFFH-FAFCRPQVIWYKETL-KLD-------------TTERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~-~l~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      .+.+..|+++.|.|... . .....+.|++... .+.             ...+..+.  ....+|+|.++...|+|.|.
T Consensus        13 pv~~~~G~~VtL~c~~~~~-~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~--~~~~sL~I~nv~~~DsG~Y~   89 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLP-ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD--PQSGALYISKVQKEDNSTYI   89 (121)
T ss_dssp             CCEEETTSCEEECCSSCCC-SSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEEC--TTTCCEEESSCCGGGCSEEE
T ss_pred             EEEEEeCCCEEEeCCCCCC-CceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEe--CCCceEEEeCCCHHHCeEEE
Confidence            46778999999999763 3 3456899998652 111             01122222  12347999999999999999


Q ss_pred             EEEEcCCCc-ceEEEEEEEeCC
Q psy17205         81 CVAENSMGK-TRQYLELSGKYP  101 (106)
Q Consensus        81 C~~~~~~~~-~~~~~~l~~~~~  101 (106)
                      |.+.+..+. ....+.|.+..+
T Consensus        90 c~v~~~~~~~~~~~~~L~V~~~  111 (121)
T 2edo_A           90 MRVLKKTGNEQEWKIKLQVLDP  111 (121)
T ss_dssp             EEEEETTTEEEECCEECEEECC
T ss_pred             EEEEcCCCcEEEEEEEEEEECC
Confidence            999875432 334555554443

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=98.77  E-value=1.5e-07  Score=47.34  Aligned_cols=71  Identities=13%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-----------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-----------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-----------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+++.|.|...+ ..  ...+.|++..  .   .+   .           ...++.....  .....|.|.++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~-~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (120)
T 3b9v_A            8 GGGLVQPGGSLRLSCAASG-FNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSL   86 (120)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCEEEeCCccEEEEEEeeC-ccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcCCCCEEEEEECCC
Confidence            3467889999999999976 43  5689998742  1   11   0           1235555432  44678999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        87 ~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           87 RAEDTAVYYCARWGG  101 (120)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             CHHHCEEEEEEEEcC
Confidence            999999999998864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.76  E-value=3.8e-08  Score=56.71  Aligned_cols=77  Identities=13%  Similarity=-0.004  Sum_probs=51.0

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ...+..++...+.|...++.|.+.+.|++++..+...........+   ....|.+......|.|.|.|.+.|..+....
T Consensus       126 ~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  205 (313)
T 4fqp_A          126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQ  205 (313)
T ss_dssp             CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCE
T ss_pred             ceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccc
Confidence            3445567788889987643789999999987654332111111111   1225788888888999999999997665443

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.75  E-value=4e-07  Score=45.50  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-----------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-----------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-----------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+++.|.|...+ ..  ...+.|++..  .   .+   .           ...++.....  .....|+|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (117)
T 2yc1_A            9 GGLVQPGGSLRLSCTGSG-FTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDDAKKTLSLQMNSLR   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CEEEcCCCeEEEEEEecC-cccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeCCCCEEEEEECCCC
Confidence            467889999999999976 43  4679998742  1   11   1           1235555432  456789999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        88 ~~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           88 AEDTAVYYCARGGV  101 (117)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HHHCEEEEEEEEeC
Confidence            99999999998864

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.75  E-value=1.7e-08  Score=57.21  Aligned_cols=65  Identities=11%  Similarity=-0.042  Sum_probs=45.6

Q ss_pred             EeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         18 IETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+..|++++|.|.+.+ . .+.+.|++++..+......... .......|.|.++.  |.|.|.|.+.+.
T Consensus       117 ~V~~G~~vtL~C~~~~-~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRS-S-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             TCBTTCEEEEEEECSS-C-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             ccCCCCEEEEEEeCCC-C-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcC
Confidence            4568999999999877 4 4689999998655432110000 00124578899988  999999999865

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.75  E-value=3.2e-08  Score=55.69  Aligned_cols=77  Identities=17%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCCE--E---cC---------CCCCEEEEE--cCcEEEEEEcc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKETL--K---LD---------TTERRIMET--RGRRHTLVIRK   70 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~~--~---l~---------~~~~~~~~~--~~~~~~l~~~~   70 (106)
                      +.+...+..+.+..|+++.|.|...+ . +.+.+.|++...  .   +.         ...++....  ......|.|.+
T Consensus       137 ~~v~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  215 (259)
T 3omz_A          137 QKVTQAQSSVSMPVRKAVTLNCLYET-SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA  215 (259)
T ss_dssp             CEEECCCCCEEEETTCCEEECCEEEC-CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred             eeeEEeCCEEEEcCCCCEEEEEECCC-ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence            45555666688889999999998876 5 788999998431  1   10         012333221  12344699999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +...|.|.|.|.+..
T Consensus       216 v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          216 LQLEDSAKYFCALGE  230 (259)
T ss_dssp             CCGGGCSEEEEEEES
T ss_pred             CChhHCEEEEEEEeC
Confidence            999999999999975

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=98.75  E-value=4.2e-07  Score=45.83  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---C-----------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---D-----------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~-----------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+++.|.|...+ .+  ...+.|++..     ..+   .           ...++.....  .....|+|.++
T Consensus        10 ~~~~v~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (121)
T 2xt1_B           10 GGGLVQAGGSLRLSCAASG-SFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDDDKNILYLQMNDL   88 (121)
T ss_dssp             CCEEEETTCCEEEEEEEES-SSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEeCCCCEEEEEEecC-eeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeCCCCEEEEEECCC
Confidence            3577889999999999975 43  5689998842     111   0           1235555442  35678999999


Q ss_pred             CCCCCEeeEEEEEcC-CCcce
Q psy17205         72 LFTDFGNYSCVAENS-MGKTR   91 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~-~~~~~   91 (106)
                      +.+|.|.|.|.+... +|...
T Consensus        89 ~~~DsG~Y~C~~~~~~fg~Gt  109 (121)
T 2xt1_B           89 KPEDTAMYYCKASGSSWGQGT  109 (121)
T ss_dssp             CGGGCEEEEEEETTCCCCCCE
T ss_pred             CHHHCEEEEEEEEeCEECCCE
Confidence            999999999998632 44433

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.75  E-value=8.5e-09  Score=57.06  Aligned_cols=66  Identities=15%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCC-CCEE-EE--EcC---cEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTT-ERRI-ME--TRG---RRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~-~~~~-~~--~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .|+.+.|.|.+.+ .+++  .+.|++++..+... .... ..  ..+   ....|.+......|.|.|.|.+.|..
T Consensus       148 ~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  222 (233)
T 3bqu_C          148 TSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT  222 (233)
T ss_dssp             HTTEEEEEEEEEE-EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC-
T ss_pred             cCCceEEEEEEcc-ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            5889999999998 5443  79999998766543 1000 00  001   12358888888889999999999864

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.75  E-value=4e-08  Score=55.20  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CCC---------C-CEEEEEcCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DTT---------E-RRIMETRGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~~---------~-~~~~~~~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+++.|.|...+ .+.+.+.|++..  .   .+   ...         . ++.+....... |.|.+++.
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~   83 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKN-SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANM   83 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSC-TTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESC
T ss_pred             eCCCeEEEeCCCcEEEEEEeCC-CCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCCh
Confidence            3455678889999999999888 888999998731  0   00   000         0 22222222222 99999999


Q ss_pred             CCCEeeEEEEEcCC
Q psy17205         74 TDFGNYSCVAENSM   87 (106)
Q Consensus        74 ~~~g~y~C~~~~~~   87 (106)
                      .|.|.|.|.+.+..
T Consensus        84 ~DsG~Y~C~~~~~~   97 (253)
T 3to4_D           84 SQGRTLYCTSSADH   97 (253)
T ss_dssp             SSCEEEEEEEECSC
T ss_pred             hhCeEEEEEEecCC
Confidence            99999999998653

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.75  E-value=7.6e-08  Score=55.23  Aligned_cols=73  Identities=8%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE---cC--------------CCCCEEEEE--cCcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK---LD--------------TTERRIMET--RGRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~---l~--------------~~~~~~~~~--~~~~~~l~~~~   70 (106)
                      +..+.+..|+++.|.|...+ .+  .+.+.|++..  ..   +.              ...++....  ......|.|.+
T Consensus        29 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASG-YTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             CCcEEecCCCCEEEEEeccC-CcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            34577889999999999987 66  5789999852  11   10              013443332  23356899999


Q ss_pred             cCCCCCEeeEEEEEcCC
Q psy17205         71 VLFTDFGNYSCVAENSM   87 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~~   87 (106)
                      +...|.|.|.|.+.+..
T Consensus       108 v~~~DsG~Y~C~~~~~~  124 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYK  124 (291)
T ss_dssp             CCGGGCEEEEEEEECGG
T ss_pred             CCHHHCEEEEEEEeccc
Confidence            99999999999999863

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=98.74  E-value=4.1e-07  Score=46.12  Aligned_cols=71  Identities=14%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---CC----------CCCEEEEEc--CcEEEEEEcccC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---DT----------TERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~~----------~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      ..+.+..|+++.|.|...+ ..  ...+.|++..     ..+   ..          ..++.....  .....|.|.+++
T Consensus         8 ~~~~~~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   86 (124)
T 1yc7_A            8 GGGSVQAGGSLRLSCAVSG-STYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQ   86 (124)
T ss_dssp             CCEEECTTCCEEEEEEEES-CCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCCEEEEEEEeC-CCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            3567889999999999975 43  4578998742     111   10          135555442  346789999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        87 ~~Dsg~Y~C~~~~~  100 (124)
T 1yc7_A           87 REDTGMYYCQIQCG  100 (124)
T ss_dssp             GGGCEEEEEEEEEC
T ss_pred             HHHCEEEEEEEEeC
Confidence            99999999998864

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=98.74  E-value=2.2e-07  Score=46.87  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCCE-----Ec---C-----------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKETL-----KL---D-----------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~-----~l---~-----------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+.+.|.|...+ ..  ...+.|++...     .+   .           ...++.....  .....|+|.+++
T Consensus         9 ~~~~~~G~~vtL~C~~~~-~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   87 (123)
T 2wzp_D            9 GGLVQAGGSLRLSCTASR-RTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDSGKNTVYLQMNSLK   87 (123)
T ss_dssp             CEEEETTCCEEEEEEESS-CCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEETTEEEEEEEECSCC
T ss_pred             CEEEcCCCcEEEEEEecC-CCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeCCCCEEEEEECCCC
Confidence            467889999999999975 33  46799987531     11   0           0235555432  335689999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        88 ~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           88 PEDTAIYYCAARSG  101 (123)
T ss_dssp             GGGCEEEEEEEEES
T ss_pred             HHHCEEEEEEEecC
Confidence            99999999998875

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.74  E-value=1.3e-07  Score=47.15  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=52.7

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C--C-------CCCEEEEE--cCcEEEEEEccc
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D--T-------TERRIMET--RGRRHTLVIRKV   71 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~--~-------~~~~~~~~--~~~~~~l~~~~~   71 (106)
                      .+..+.+..|+++.|.|...+ ..  ...+.|++..  .   .+   .  .       ..++....  ......|.|.++
T Consensus         5 ~p~~v~~~~G~~vtL~C~~~~-~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (114)
T 1u9k_A            5 EEERYDLVEGQTLTVKCPFNI-MKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDL   83 (114)
T ss_dssp             CCEEEEECTTCCEEEEEECCH-HHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSC
T ss_pred             CCccEEEeCCCcEEEEeEecC-cccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecCcCCEEEEEECCC
Confidence            345678889999999999875 33  4579999852  1   11   0  0       13444432  234568999999


Q ss_pred             CCCCCEeeEEEEEcCCC
Q psy17205         72 LFTDFGNYSCVAENSMG   88 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~~~   88 (106)
                      +.+|.|.|.|.+.+..+
T Consensus        84 ~~~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           84 QVTDSGLYRCVIYHPPN  100 (114)
T ss_dssp             CGGGCEEEEEEEECTTS
T ss_pred             ChHHCEEEEEEEecCCC
Confidence            99999999999988653

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.74  E-value=1.9e-08  Score=56.39  Aligned_cols=69  Identities=14%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             cCCeEEEEEEEeecCC-CC-eEEEeeCCEEcCCCCCEEE--E--EcC---cEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         21 RGRRHTLIFFFHFAFC-RP-QVIWYKETLKLDTTERRIM--E--TRG---RRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p-~p-~~~w~~~~~~l~~~~~~~~--~--~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      .|+.+.|.|.+.+ .+ .+ .+.|++++..+........  .  ..+   ....|.|..+...|.|.|.|.+.|.....
T Consensus       164 ~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          164 TSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             HHTEEEEEEEEEE-EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCCcEEEEEEEee-EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            5789999999988 54 33 7999999987654300000  0  001   12358899988889999999999975443

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=98.73  E-value=2.4e-07  Score=46.63  Aligned_cols=71  Identities=14%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---Ec---C-----------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KL---D-----------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l---~-----------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+++.|.|...+ ..  ...+.|++..  .   .+   .           ...++.....  .....|+|.++
T Consensus         8 ~~~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   86 (121)
T 1j05_H            8 GAELVEPGASVKLSCTASG-FNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSL   86 (121)
T ss_dssp             CCEEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCEEEeCCCcEEEEEEecC-cccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcCCCCEEEEEECCC
Confidence            3467889999999999976 43  4689998742  1   11   0           0135554432  34668999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +.+|.|.|.|.+.+.
T Consensus        87 ~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           87 TSEDTAVYYCAPFGY  101 (121)
T ss_dssp             CGGGCEEEEEEEEBT
T ss_pred             CHHHCEEEEEEEEcC
Confidence            999999999999875

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.73  E-value=3.3e-07  Score=46.06  Aligned_cols=72  Identities=8%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---C-----------CCCCEEEEEc--CcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---D-----------TTERRIMETR--GRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~-----------~~~~~~~~~~--~~~~~l~~~~   70 (106)
                      +..+.+..|+++.|.|...+ ..  ...+.|++..     ..+   .           ...++.....  .....|+|.+
T Consensus         7 p~~~~~~~G~~v~L~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (120)
T 1mfa_H            7 SGTVVARPGASVKMSCKASG-YTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEES-SCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEeCCCCEEEEEEeeC-ccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeCCCCEEEEEECC
Confidence            33467889999999999975 33  4689998732     111   0           1135555432  4567899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      ++.+|.|.|.|.+.+.
T Consensus        86 ~~~~Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           86 LTSEDSAVYYCTRGGH  101 (120)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999998864

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.73  E-value=2.4e-07  Score=50.72  Aligned_cols=75  Identities=15%  Similarity=0.138  Sum_probs=53.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--C---EEcC---C------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--T---LKLD---T------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~---~~l~---~------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.+.|.|...+ .....+.|++.  +   ..+.   .      ..|+....  ......|+|.+++.
T Consensus         3 VtQ~p~~v~v~~G~svtL~C~~s~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~   81 (200)
T 3rgv_A            3 VTQMQGQVTLSENDFLFINCTYST-TGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE   81 (200)
T ss_dssp             EECCCSEEEEETTCCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS
T ss_pred             cEECCCEEEEeCCCCEEEEEEecC-CCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC
Confidence            455677788899999999999987 55668999974  2   1110   0      12443331  23456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.|.|.|.+..
T Consensus        82 ~DsG~Y~Ca~~~   93 (200)
T 3rgv_A           82 IDSAVYYCAANS   93 (200)
T ss_dssp             TTCEEEEEEEES
T ss_pred             ccCCCEEEEecc
Confidence            999999999864

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=98.72  E-value=2.7e-07  Score=51.51  Aligned_cols=74  Identities=23%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EEcC----------CCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LKLD----------TTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~l~----------~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+.+.|.|...+ . ...+.|++..  ..+.          ...|+....  ......|+|.+++.+|
T Consensus         4 V~Q~p~~v~v~~G~sVtL~C~~s~-~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~D   81 (229)
T 3mbe_C            4 VEQNPPALSLYEGADSGLRCNFST-T-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLED   81 (229)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-C-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTT
T ss_pred             EEEcCCEEEEEcCCCEEEEEEEeC-C-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccC
Confidence            445566788889999999999988 6 6789999742  1111          123444432  2456789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      .|.|.|.+..
T Consensus        82 SG~Y~Ca~~~   91 (229)
T 3mbe_C           82 SGTYFCAAED   91 (229)
T ss_dssp             CBEEEEEEEC
T ss_pred             CCCEEEEEEe
Confidence            9999999885

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.72  E-value=4.3e-07  Score=45.73  Aligned_cols=70  Identities=14%  Similarity=0.091  Sum_probs=50.9

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---CC----------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---DT----------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~~----------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      .+.+..|+.+.|.|...+ .+  ...+.|++..     ..+   ..          ..++.....  .....|+|.+++.
T Consensus         9 ~~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   87 (121)
T 1kxv_C            9 GGTVPAGGSLRLSCAASG-NTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   87 (121)
T ss_dssp             CEEECTTCCEEEEEEEES-CTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecC-CCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCH
Confidence            567889999999999986 43  4679998752     111   11          135555442  3467899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.|.|.|.+.+.
T Consensus        88 ~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           88 DDTAMYYCKPSLR  100 (121)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             HHCEEEEEEEEec
Confidence            9999999998874

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.72  E-value=1.6e-07  Score=46.90  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=49.8

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---CC----------CCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---DT----------TERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~~----------~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      +.+..|+++.|.|...+ ..  ...+.|++..     ..+   ..          ..++.....  .....|+|.+++.+
T Consensus        10 ~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   88 (116)
T 1a2y_B           10 GLVAPSQSLSITCTVSG-FSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             SEECTTSCEEEEEEEES-SCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEeCCCcEEEEEEEcC-CCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEECCCCEEEEEECCCCHH
Confidence            57789999999999986 43  4689998742     111   10          124544432  44678999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |.|.|.|.+.+.
T Consensus        89 Dsg~Y~C~~~~~  100 (116)
T 1a2y_B           89 DTARYYCARERD  100 (116)
T ss_dssp             GCEEEEEEEESS
T ss_pred             HCEEEEEEEecC
Confidence            999999999864

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.72  E-value=1.9e-07  Score=53.60  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE-EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ......++.+.+.|....+.|.+.+.|++++..+........ ........|.+..+...|.|.|.|.+.|..+....
T Consensus       123 ~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  200 (308)
T 4fom_A          123 SLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDI  200 (308)
T ss_dssp             CCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCE
T ss_pred             eeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCce
Confidence            344456788999997643289999999998866543210000 00011235889999999999999999998766543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.71  E-value=6.5e-08  Score=55.23  Aligned_cols=72  Identities=14%  Similarity=0.173  Sum_probs=52.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC--EEc------C-----------CCCCEEEEE--cCcEEEEEEcc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET--LKL------D-----------TTERRIMET--RGRRHTLVIRK   70 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~--~~l------~-----------~~~~~~~~~--~~~~~~l~~~~   70 (106)
                      +..+.+..|+++.|.|...+ .  +.+.+.|++..  ..+      .           ...++.+..  ......|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSE-VTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECC-SCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeec-cCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            55677889999999999977 5  56789998742  110      0           012444432  23456899999


Q ss_pred             cCCCCCEeeEEEEEcC
Q psy17205         71 VLFTDFGNYSCVAENS   86 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~~   86 (106)
                      +...|.|.|.|.+.+.
T Consensus        86 v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           86 LRSEDTAVYYCARSPS  101 (280)
T ss_dssp             CCSTTCEECCEEECSS
T ss_pred             CChhhCEEEEEEEecC
Confidence            9999999999999886

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.71  E-value=5e-07  Score=50.81  Aligned_cols=71  Identities=14%  Similarity=0.115  Sum_probs=50.6

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc--------------CCCCCEEEEEc--CcEEEEEEccc
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL--------------DTTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l--------------~~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+.+..|+++.|.|...+ ..  ...+.|++..     ..+              ....++.+...  .....|.|.++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASG-FTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             CCCEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCEEECCCCcEEEEEEeeC-ccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            3467789999999999976 33  5689998742     111              01134444432  34667999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +..|.|.|.|.+.+.
T Consensus        87 ~~~DsG~Y~C~~~~~  101 (253)
T 3liz_H           87 KSEDTAMYYCTRDPA  101 (253)
T ss_dssp             CGGGCEEEEEEECCB
T ss_pred             ChhhCEEEEEEEecC
Confidence            999999999999875

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.71  E-value=3.5e-07  Score=49.78  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.+.|.|...+ .....+.|++..     ..+.         ...++....  ......|.|.+++.
T Consensus         4 v~Q~p~~v~v~~G~~v~L~C~~s~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   82 (194)
T 1lp9_E            4 VTQTEGLVTLTEGLPVMLNCTYQS-TYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL   82 (194)
T ss_dssp             EEECCSEEEEETTSCEEECEEEEC-SSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred             cEecCCEEEEecCCCEEEEEEeCC-CCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCc
Confidence            445566788899999999999987 666789998753     1110         112443321  12345799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      .|.|.|.|.+.+
T Consensus        83 ~Dsg~Y~C~~~~   94 (194)
T 1lp9_E           83 SDSALYYCALFL   94 (194)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCeeEEEEEec
Confidence            999999999986

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=98.71  E-value=2.5e-07  Score=46.70  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E---EcC--------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L---KLD--------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~---~l~--------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+.+..|+.+.|.|...+ ..  ...+.|++..  .   .+.              ...++.....  .....|+|.+++
T Consensus        11 ~~~~~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   89 (123)
T 2p45_B           11 GGLVQAGGSLRLSCAASG-YAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDKGKNTVYLQMDSLK   89 (123)
T ss_dssp             CEEEETTCCEEEEEEEES-CSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCTTSSEEEEEESSCC
T ss_pred             CEEEeCCCCEEEEEEecC-ccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeCCCCEEEEEECCCC
Confidence            467889999999999976 43  5689998742  1   110              0135554432  346689999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        90 ~~Dsg~Y~C~~~~~  103 (123)
T 2p45_B           90 PEDTATYYCAAGGY  103 (123)
T ss_dssp             GGGCEEEEEEESSC
T ss_pred             HHHCEEEEEEEEec
Confidence            99999999998763

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.70  E-value=3.7e-08  Score=57.08  Aligned_cols=72  Identities=13%  Similarity=0.154  Sum_probs=49.4

Q ss_pred             EEeecCCeEEEEEEEeecC-CCC---eEEEeeCC-EEcCCCCCEEEEE-cC---cEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         17 IIETRGRRHTLIFFFHFAF-CRP---QVIWYKET-LKLDTTERRIMET-RG---RRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~-p~p---~~~w~~~~-~~l~~~~~~~~~~-~~---~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..+..|+.+.|.|.+.+ . |.+   .+.|++++ ..+.......... .+   ....|.|.++...|.|.|.|.+.|..
T Consensus       123 ~~v~~G~~v~L~C~~~g-~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  201 (323)
T 2wqr_A          123 FDLFIRKSPTITCLVVD-LAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH  201 (323)
T ss_dssp             HHHHTSSCCEEEEEEEE-ECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             HHhccCCeEEEEEEEec-cCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCC
Confidence            34567999999999987 5 456   89999965 4333222111101 01   23369999999999999999999976


Q ss_pred             Cc
Q psy17205         88 GK   89 (106)
Q Consensus        88 ~~   89 (106)
                      +.
T Consensus       202 ~~  203 (323)
T 2wqr_A          202 LP  203 (323)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.70  E-value=5.2e-08  Score=54.36  Aligned_cols=69  Identities=10%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             ecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEE--------EcCc---EEEEEEcccCCCC-CEeeEEEEEc
Q psy17205         20 TRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIME--------TRGR---RHTLVIRKVLFTD-FGNYSCVAEN   85 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~--------~~~~---~~~l~~~~~~~~~-~g~y~C~~~~   85 (106)
                      ..|+.+.|.|.+.+ .+++  .+.|++++..+.........        ..+.   ...|.+......| .|.|.|.+.|
T Consensus       138 ~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~  216 (246)
T 4dzb_B          138 SHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQF  216 (246)
T ss_dssp             HHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             cCCCcEEEEEEEcc-CcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEe
Confidence            34899999999998 6654  89999999887653111000        0111   1247777777777 8999999998


Q ss_pred             CCCc
Q psy17205         86 SMGK   89 (106)
Q Consensus        86 ~~~~   89 (106)
                      ....
T Consensus       217 ~~~~  220 (246)
T 4dzb_B          217 YGLS  220 (246)
T ss_dssp             CCBC
T ss_pred             cCCC
Confidence            6543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.69  E-value=8e-08  Score=55.70  Aligned_cols=67  Identities=13%  Similarity=0.258  Sum_probs=48.3

Q ss_pred             CCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEE----EEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         22 GRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRI----METRG---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~----~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      |+.+.|.|.+.+ .+++  .+.|++++..+.......    ....+   ....|.|..+...|.|.|.|.+.|....
T Consensus       234 g~~~~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          234 RDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TTEEEEEEEEEE-EBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             CCcEEEEEEeee-eeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            899999999987 5443  799999998876431110    00011   1236888888888999999999998765

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=98.69  E-value=1.8e-06  Score=42.54  Aligned_cols=87  Identities=14%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CE--EcC---------CCCCEEEE-EcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TL--KLD---------TTERRIME-TRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~--~l~---------~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+.+|++++|.|..........+.|++.  +.  .+.         ...++.+. .......|+|.+++.+|+|.|
T Consensus         4 p~~v~~~~G~svtl~C~~s~~~~~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~L~I~~l~~~Dsg~Y   83 (106)
T 2frg_P            4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEY   83 (106)
T ss_dssp             CEEEEECTTCCEEEEEECCGGGTTSEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEEecCCcEEEEeEecCCcccCcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcCCCCEEEEEEccCCHHHCEEE
Confidence            44567789999999998764122345789864  21  110         11344432 223457899999999999999


Q ss_pred             EEEEEcCCCcce-EEEEEEEeC
Q psy17205         80 SCVAENSMGKTR-QYLELSGKY  100 (106)
Q Consensus        80 ~C~~~~~~~~~~-~~~~l~~~~  100 (106)
                      .|.+....+... ..+.|.+.|
T Consensus        84 ~C~~~~~~~~d~~~~v~L~V~p  105 (106)
T 2frg_P           84 GCMVDGARGPQILHRVSLNILP  105 (106)
T ss_dssp             EEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEeecCCCCCEeEEEEEEEeC
Confidence            999887643222 344454443

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.69  E-value=5.8e-08  Score=50.07  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             CCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCC-----EEcC-----C----------CCCEEEEEcCcEEEEEEcccC
Q psy17205         14 ERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKET-----LKLD-----T----------TERRIMETRGRRHTLVIRKVL   72 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~-----~~l~-----~----------~~~~~~~~~~~~~~l~~~~~~   72 (106)
                      +..+.+..|+++.|.|... + .....+.|++..     ..+.     .          ..++..........|+|.+++
T Consensus         6 p~~v~v~~G~~vtL~C~~s~~-~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~~~   84 (137)
T 3bdb_A            6 LHVKTVKRGENVTMECSMSKV-TNKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAR   84 (137)
T ss_dssp             CEECCCCTTCEECCCCBCTTC-CCGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCC
T ss_pred             CCeEEEcCCCCEEEEeecCCC-cCcceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECCCC
Confidence            3456678899999999987 6 566789998742     1110     0          245555555556789999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|.|.|.|.+.+.
T Consensus        85 ~~Dsg~Y~C~~~~~   98 (137)
T 3bdb_A           85 EDDGGEYFCGEVEG   98 (137)
T ss_dssp             STTCEEEEEEEECS
T ss_pred             HHHCEEEEEEEccC
Confidence            99999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	7e-09
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-07
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-06
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	4e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	6e-06
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.001
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.002
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.002
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 2e-09
 Identities = 12/60 (20%), Positives = 22/60 (36%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
              W K   ++  +E   +E       L I        G Y+ + EN +G  +  + L+
Sbjct: 30 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 7e-09
 Identities = 13/86 (15%), Positives = 27/86 (31%)

Query: 12  TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKV 71
             ++ I +                       + + L  +T  R  +ET   R    +   
Sbjct: 42  IWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGA 101

Query: 72  LFTDFGNYSCVAENSMGKTRQYLELS 97
              D G Y+   +N +G+ +  L + 
Sbjct: 102 EKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 37 RPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
           P + W K   +     R    + R +  +L++  V+ +D GNY+CV EN  G       
Sbjct: 34 MPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93

Query: 96 LS 97
          L 
Sbjct: 94 LD 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (99), Expect = 3e-07
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P V W+K+  +L  + + +    G  + L I +V   D G Y+  A+NS G   + + L
Sbjct: 30 PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89

Query: 97 S 97
          +
Sbjct: 90 N 90

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.9 bits (95), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P V+W      L      + +       LVI+ V   D G Y C A N  G       +
Sbjct: 32 APNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86

Query: 97 S 97
           
Sbjct: 87 Q 87

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.0 bits (92), Expect = 4e-06
 Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 12 TTERRIIETR-GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRK 70
            ER  ++   G            +      W                       L I K
Sbjct: 8  AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 67

Query: 71 VLFTDFGNYSCVAENSMGKT 90
             +D GNYSC A + +   
Sbjct: 68 TEASDLGNYSCFATSHIDFI 87

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 6e-06
 Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 3/82 (3%)

Query: 9  KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVI 68
            +     +    G   TL            V W        +   R      R   L++
Sbjct: 8  AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR---LLL 64

Query: 69 RKVLFTDFGNYSCVAENSMGKT 90
          R V   D GNYSC        T
Sbjct: 65 RSVQLHDSGNYSCYRAGRPAGT 86

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 1e-05
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRG--------RRHTLVIRKV 71
          T G R  L    H      +  W+K+ + + T + +              +   L+   V
Sbjct: 15 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 74

Query: 72 LFTDFGNYSCVAENSMGKTR 91
             D G Y C A+N  G   
Sbjct: 75 TAFDSGEYYCQAQNGYGTAM 94

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 24  RHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-------ETRGRRHTLVIRKVLFTDF 76
            H  I F       P + W      L+ T                R   L + +    + 
Sbjct: 16  HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75

Query: 77  GNYSCVAENSMGKTRQYLELSGKYP 101
           GNY+ +A N  G+    +  +    
Sbjct: 76  GNYTLLAANPFGQASASIMAAFMDN 100

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-05
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 25 HTLIFFFHFAFCRPQVIWYKETLK--LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV 82
            +      +     V W+K   +       R  +   G++H L+I      D   YS +
Sbjct: 16 ERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 75

Query: 83 AENSMGKTRQYLEL 96
                  +  ++L
Sbjct: 76 TTGGQSSAKLSVDL 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 29/61 (47%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           P V W ++   L T+ R  + T   + T  I  V  +D GNYS V ENS GK      L
Sbjct: 28 VPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 87

Query: 97 S 97
          +
Sbjct: 88 T 88

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 38 PQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          P + W K+   +   +     +  +     L ++ V  +D G Y C  E+      
Sbjct: 26 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 81

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-05
 Identities = 9/79 (11%), Positives = 16/79 (20%)

Query: 19  ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGN 78
              G          +   +   +  K    L   +     ++     L I        G 
Sbjct: 27  RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGG 86

Query: 79  YSCVAENSMGKTRQYLELS 97
           Y C              L+
Sbjct: 87  YRCEVSTKDKFDCSNFNLT 105

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 11/66 (16%), Positives = 17/66 (25%)

Query: 32  HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
            +   +   +  K    L   E     +R     + I K      GNY C          
Sbjct: 36  KWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 95

Query: 92  QYLELS 97
              +L 
Sbjct: 96  CSFDLE 101

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 37  RPQVIWYKETLKLDTTE-------------RRIMETRGRRHTLVIRKVLFTDFGNYSCVA 83
           +P + W K   K  +                 +  T      L IR V F D G Y+C+A
Sbjct: 34  QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 93

Query: 84  ENSMGKTRQYLELS 97
            NS+G +     L+
Sbjct: 94  GNSIGISFHSAWLT 107

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.8 bits (81), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%)

Query: 32 HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
               +     +K+  K    +      R    +LV  +   +D G+Y C AE   G   
Sbjct: 26 IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVAS 85

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 38 PQVIWYKE--TLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
          P + W K+   ++ +  +            L IR V   D   Y C+AEN  G+    + 
Sbjct: 35 PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 94

Query: 96 LS 97
          L 
Sbjct: 95 LK 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.6 bits (81), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL 96
           PQ+ W K          +  +       L I+ V F D G Y C AEN  G+      +
Sbjct: 34 VPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87

Query: 97 S 97
           
Sbjct: 88 I 88

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 38 PQVIWYKETLK---LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG 88
               + + +        E ++  +R    +  +      D G Y C+     G
Sbjct: 31 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 84

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 37 RPQVIWYKETLKLDTTERRIMETRGR-RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE 95
           P+  WYK  +K++ ++R            LVIR V   D  +    A N  G+T  +  
Sbjct: 33 DPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 92

Query: 96 LS 97
          L 
Sbjct: 93 LL 94

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 2/67 (2%)

Query: 37  RPQVIWYKETLKLDTTERRIMETRGR--RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
              +  ++    L            +    T            N+SC+A   +      +
Sbjct: 34  SLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNI 93

Query: 95  ELSGKYP 101
                 P
Sbjct: 94  FHKHSAP 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            + WYK+  K   +  +       +  L        D G+Y CV  NS    R  +   
Sbjct: 33 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 92

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 36 CRPQVIWYKETLKLDTTERRIMETRGR-RHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL 94
            P+V+W+K+   +  +    ++       +L I +V   D   Y+C A NS+G+     
Sbjct: 36 PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 95

Query: 95 ELS 97
          EL 
Sbjct: 96 ELL 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR----IMETRGRRHTLVIRKV 71
           + E   R    I F       P + W      L  ++        E       L+  K 
Sbjct: 10 SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKP 69

Query: 72 LFTDFGNYSCVAENSMGKTRQYLEL 96
             + GNY+ +A+N +G   Q +  
Sbjct: 70 THYNNGNYTLIAKNPLGTANQTING 94

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 3e-04
 Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC 81
          G   T I           ++W +       +             L IR V  +D G Y C
Sbjct: 17 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-----NGILTIRNVQPSDAGTYVC 71

Query: 82 VAENSMGKTRQYLELS 97
             N     +    L 
Sbjct: 72 TGSNMFAMDQGTATLH 87

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 3e-04
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 51  TTERRIMETRGRRHTLVIRKVLFTDF-GNYSCVAENSMGKTRQYLELSGK 99
           +  R  + +   R  L I  +      G Y C   +S G  +  + L  +
Sbjct: 52  SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 5e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 52  TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP 101
           TE         +  L I+ V F+D G Y+C   +   +    +EL  + P
Sbjct: 69  TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 7e-04
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 12  TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIME------TRGRRHT 65
           ++ +      G +  +  F        ++ W  +   L++               G   T
Sbjct: 11  SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 70

Query: 66  LVIRKV-LFTDFGNYSCVAENSMGKTRQYLELS 97
           L I  +        Y+C A NS G   + + L 
Sbjct: 71  LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 8e-04
 Identities = 8/64 (12%), Positives = 15/64 (23%), Gaps = 3/64 (4%)

Query: 38  PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
             V+  +   +L               T  +          +SC  E  +      L  +
Sbjct: 37  LTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 93

Query: 98  GKYP 101
              P
Sbjct: 94  TSAP 97

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 11/54 (20%), Positives = 16/54 (29%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR 91
          P    +K                     ++   V   D G+Y CVA N+ G   
Sbjct: 36 PATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVV 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 9/71 (12%)

Query: 20 TRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNY 79
                 L            ++W++ T K+                 V+     T    +
Sbjct: 14 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---------SPSVLNVTGVTQSTMF 64

Query: 80 SCVAENSMGKT 90
          SC A N  G  
Sbjct: 65 SCEAHNLKGLA 75

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN 85
           + FF +     P++ WYK+   L          +     L++  V     GNY+C A  
Sbjct: 23 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASY 79

Query: 86 SMGKTR 91
          +    +
Sbjct: 80 TYLGKQ 85

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (73), Expect = 0.002
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 38 PQVIWYKETLKLDTTERRIMETRGRRH-------TLVIRKVLFTDFGNYSCVAENSMGKT 90
           +  W+K+ + + T  +         +        LV   +  +D G YSC A N  G  
Sbjct: 33 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 92

Query: 91 R 91
           
Sbjct: 93 M 93

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 31.8 bits (71), Expect = 0.004
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS 97
            L   K++  D G Y CVAEN  G      EL+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.86
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.84
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.84
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.83
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.83
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.81
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.77
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.75
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.74
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.73
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.71
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.71
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.71
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.7
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.7
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.7
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.69
d2avga1	110	Cardiac myosin binding protein C, different domain	99.69
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.68
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.67
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.66
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.66
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.65
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.65
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.65
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.64
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.64
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.63
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.62
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.62
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.6
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.58
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.58
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.57
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.56
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.56
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.55
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.55
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.52
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.51
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.51
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.5
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.5
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.5
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.5
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.44
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.26
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.26
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.23
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.02
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.95
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.95
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.94
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.94
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.92
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.91
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.89
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.89
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.89
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.88
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.88
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.88
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.87
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.85
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.84
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.83
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.83
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.82
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.82
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.79
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.79
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.79
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.78
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.78
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.76
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.74
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.73
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.7
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.7
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.7
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.69
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.69
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.67
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.66
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.65
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.64
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.64
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.63
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.63
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.63
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.63
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.62
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.61
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.61
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.6
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.6
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.6
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.59
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.59
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.59
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.58
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.57
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.57
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.55
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.55
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.55
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.53
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.52
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.52
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.51
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.49
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.48
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.46
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.43
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.42
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.36
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.33
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.32
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.32
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.31
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.29
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.29
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.28
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.26
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.24
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.23
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.2
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.16
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.16
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.15
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.1
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.1
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.06
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.02
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.0
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.99
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.98
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.96
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.95
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.91
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.88
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.88
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.86
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.82
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.82
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.77
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.7
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.63
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.59
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.58
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.51
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.5
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.48
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.46
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.45
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.43
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.42
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.39
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.37
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.3
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.2
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.2
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.18
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.16
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.13
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.13
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.11
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.11
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.1
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.09
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.06
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.04
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.04
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.02
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.99
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.97
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.93
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.91
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.87
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.85
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.84
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.82
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.74
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.73
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.69
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.68
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.65
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.65
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.65
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.59
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.59
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.58
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.55
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.54
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.49
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.47
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.46
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.44
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.44
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.41
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.39
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.39
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.38
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.38
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.34
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.34
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.29
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.27
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.24
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.23
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.17
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.15
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.15
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.07
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.07
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.0
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.97
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	95.95
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	95.86
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.82
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.78
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	95.71
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.68
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	95.58
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.54
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.51
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.34
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.32
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.22
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.0
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.4
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	93.85
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	91.03
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	89.35
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	87.35
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	85.07

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-20  Score=91.61  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=79.3

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.|...+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+....++.+......+.|.|.++...|.|.|.|.+.|..
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g-~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   79 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTG-TQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL   79 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEES-SSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSS
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEe-cCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECC
Confidence            34555666788899999999999999 99999999999999988888877777777889999999999999999999999


Q ss_pred             CcceEEEEEEEeC
Q psy17205         88 GKTRQYLELSGKY  100 (106)
Q Consensus        88 ~~~~~~~~l~~~~  100 (106)
                      |.....+.|.+..
T Consensus        80 G~~~~~~~l~V~~   92 (101)
T d2cqva1          80 GSRQAQVNLTVVD   92 (101)
T ss_dssp             CEEECCEEEEEEC
T ss_pred             CEEEEEEEEEEEe
Confidence            9988777666443

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=5.6e-21  Score=92.66  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|..
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g-~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIA-SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEEC-SSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEE-cCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            56777777888899999999999999 99999999999999987766666555667789999999999999999999999


Q ss_pred             CcceEEEEEEEeCC
Q psy17205         88 GKTRQYLELSGKYP  101 (106)
Q Consensus        88 ~~~~~~~~l~~~~~  101 (106)
                      |.....+.|.+...
T Consensus        81 G~~~~~~~l~V~~~   94 (97)
T d1koaa1          81 GTKEEIVFLNVTRH   94 (97)
T ss_dssp             EEEEEEECCEEECS
T ss_pred             CEEEEEEEEEEeec
Confidence            98887777765543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=4e-20  Score=88.99  Aligned_cols=91  Identities=19%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +|.+......+.+..|+.+.|.|.+.| .|.|.+.|++++..+....+...........|.|.++...|.|.|.|.+.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g-~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIG-APDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEEC-CSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEE-ecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            356666777889999999999999999 9999999999998887776776666666778999999999999999999999


Q ss_pred             CCcceEEEEEEE
Q psy17205         87 MGKTRQYLELSG   98 (106)
Q Consensus        87 ~~~~~~~~~l~~   98 (106)
                      .|.....+.|.+
T Consensus        81 ~G~~~~~~~l~V   92 (93)
T d1wiua_          81 LGEDEAIFEVIV   92 (93)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888877764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.84  E-value=4.7e-19  Score=85.93  Aligned_cols=92  Identities=21%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEE-EEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIM-ETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.|......+.+..|+.+.|.|.+.| .|.|.+.|++++..+....+... ........|.|.++...|.|.|.|.+.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g-~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVG-KPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEE-ecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            467777778888999999999999999 99999999999999987766543 3345567899999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy17205         86 SMGKTRQYLELSGK   99 (106)
Q Consensus        86 ~~~~~~~~~~l~~~   99 (106)
                      ..|.......|.+.
T Consensus        83 ~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          83 IAGETSSHAFLLVQ   96 (98)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99998877777654

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.83  E-value=5.2e-19  Score=86.34  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=79.3

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-CcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-GRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.|...+..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....++.+... .....|.|.++...|.|.|.|.+.|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g-~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEG-YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEE-ESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEe-ccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            467777777888999999999999999 99999999999999988877766543 3466899999999999999999999


Q ss_pred             CCCcceEEEEEEEe
Q psy17205         86 SMGKTRQYLELSGK   99 (106)
Q Consensus        86 ~~~~~~~~~~l~~~   99 (106)
                      ..|.....+.|.+.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99988887777653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=1.9e-19  Score=85.90  Aligned_cols=87  Identities=23%  Similarity=0.248  Sum_probs=74.5

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....++.....    .|.|.++...|.|.|.|.+.|..
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g-~P~p~v~W~k~g~~i~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~   76 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASG-KPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKH   76 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEE-ESCCEEEEEETTEECCCCSSEEEETT----EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEE-EcCCEEEEEEeeccccccceeeeeee----eEEEEeecccCCEEEEEEEEeCC
Confidence            56667777888999999999999999 99999999999999988777655432    69999999999999999999999


Q ss_pred             CcceEEEEEEEe
Q psy17205         88 GKTRQYLELSGK   99 (106)
Q Consensus        88 ~~~~~~~~l~~~   99 (106)
                      |.......|.+.
T Consensus        77 G~~~~~~~l~V~   88 (89)
T d1cs6a4          77 GTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            988777776654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.81  E-value=6.3e-20  Score=87.95  Aligned_cols=87  Identities=29%  Similarity=0.290  Sum_probs=75.8

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKT   90 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   90 (106)
                      ...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....+..+........|.|.++...|.|.|.|.+.|..|..
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g-~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDG-EPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ   81 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCC-SSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEE-EeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE
Confidence            34566788999999999999999 99999999999988887777777776677889999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy17205         91 RQYLELSG   98 (106)
Q Consensus        91 ~~~~~l~~   98 (106)
                      ...+.|.+
T Consensus        82 ~~~~~l~V   89 (91)
T d1tnna_          82 EAEFTLTI   89 (91)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            88777664

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.77  E-value=1e-17  Score=79.80  Aligned_cols=85  Identities=24%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             cceeeccC-CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTE-RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~-~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.|...+ ..+.+..|+.+.|.|.+.| .|.|.+.|++++..+... ++.... .   .|.|.++...|.|.|.|.+.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g-~P~p~v~W~~~~~~i~~~-~~~~~~-~---~L~i~~v~~~d~G~Y~C~a~N   75 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTG-LPAPNVVWSHNAKPLSGG-RATVTD-S---GLVIKGVKNGDKGYYGCRATN   75 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEE-ESCCCCEEEETTEECCSS-SEEEET-T---EEEESSCCSTTCEEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEE-eCCCEEEEEeCCccCccc-cEEEee-e---eEEECCCChhhCEEEEEEEEE
Confidence            35565544 4567788999999999999 999999999999988654 443332 2   599999999999999999999


Q ss_pred             CCCcceEEEEEE
Q psy17205         86 SMGKTRQYLELS   97 (106)
Q Consensus        86 ~~~~~~~~~~l~   97 (106)
                      ..|.....+.|.
T Consensus        76 ~~G~~~~~~~l~   87 (89)
T d1biha4          76 EHGDKYFETLVQ   87 (89)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCEEEEEEEEE
Confidence            999887766665

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.3e-17  Score=78.62  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             ccceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEE----cCC--CCCEEEEEcCcEEEEEEcccC-CCCCE
Q psy17205          6 ETLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLK----LDT--TERRIMETRGRRHTLVIRKVL-FTDFG   77 (106)
Q Consensus         6 ~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~----l~~--~~~~~~~~~~~~~~l~~~~~~-~~~~g   77 (106)
                      +||.+...+....+..|+.+.|.|.+.+ .|.| .+.|++++..    +..  ..++..........|.|.++. ..|.|
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g-~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSES-VPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG   79 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCC-SSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEe-cCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCE
Confidence            4677877788888999999999999999 8877 7999986522    222  235566666667789999998 47999


Q ss_pred             eeEEEEEcCCCcceEEEEEEE
Q psy17205         78 NYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      .|.|.+.|..|.....+.|.+
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999999999888777765

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.5e-17  Score=78.75  Aligned_cols=91  Identities=22%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             cceeeccCC--eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205          7 TLKLDTTER--RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus         7 ~~~~~~~~~--~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      +|.+.....  ...+..|+.+.|.|.+.| .|.|.+.|++++..+.....  ...........|.|.++...|.|.|.|.
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g-~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADG-FPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEE-ESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEE-ecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            455554333  345667999999999999 99999999999988865422  1122223345799999999999999999


Q ss_pred             EEcCCCcceEEEEEEE
Q psy17205         83 AENSMGKTRQYLELSG   98 (106)
Q Consensus        83 ~~~~~~~~~~~~~l~~   98 (106)
                      +.|..|.....+.|.+
T Consensus        82 a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          82 AENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999998887777664

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=5e-17  Score=77.64  Aligned_cols=85  Identities=24%  Similarity=0.201  Sum_probs=66.0

Q ss_pred             cceeec-cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDT-TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~-~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +|.+.. .+..+.+..|+.+.|.|.+.| .|.|.+.|++++........      .....|.|.++...|.|.|.|.+.|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g-~P~p~i~W~k~~~~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFG-NPVPQIKWRKLDGSQTSKWL------SSEPLLHIQNVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEE-ESCCEEEEEECCSCCSCCCS------BSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEE-ccCCEEEEEecccccceEee------eeeeEEEeCCCCccCCEEEEEEEEE
Confidence            345543 457788899999999999999 99999999987644332210      1123799999999999999999999


Q ss_pred             CCCcceEEEEEEE
Q psy17205         86 SMGKTRQYLELSG   98 (106)
Q Consensus        86 ~~~~~~~~~~l~~   98 (106)
                      ..|.....+.|.+
T Consensus        77 ~~G~~~~~~~l~V   89 (91)
T d1cs6a3          77 IKGRDTYQGRIII   89 (91)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998877766654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.73  E-value=1.6e-17  Score=80.29  Aligned_cols=82  Identities=21%  Similarity=0.269  Sum_probs=65.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      .+.+..|+.+.|.|.+.| .|.|.+.|++++..+....+. ..........|.|.++...|.|.|.|.+.|..|.....+
T Consensus        14 ~~~v~~G~~v~l~C~~~g-~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   92 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGG-NPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   92 (97)
T ss_dssp             EEEECTTCCEEEECCEEE-ESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeE-ECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEE
Confidence            356778999999999999 999999999999988754322 122222344799999999999999999999999888777


Q ss_pred             EEEE
Q psy17205         95 ELSG   98 (106)
Q Consensus        95 ~l~~   98 (106)
                      .|.+
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=8.8e-17  Score=77.62  Aligned_cols=84  Identities=17%  Similarity=0.288  Sum_probs=66.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      ...+.+..|+++.|.|.+.+ .|.|.+.|++++..+.....  +..........|.|.++...|.|.|.|.+.|..|...
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g-~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGS-NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEEC-SSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCEEEecCCeEEEEEEEEE-ecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            45678889999999999999 99999999999998865433  2222222334799999999999999999999998865


Q ss_pred             E-EEEEEE
Q psy17205         92 Q-YLELSG   98 (106)
Q Consensus        92 ~-~~~l~~   98 (106)
                      . .+.|.+
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            4 566654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.5e-16  Score=77.38  Aligned_cols=95  Identities=14%  Similarity=0.069  Sum_probs=69.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCCEEcC---CCCCEEEEEc------CcEEEEEEcccCCCCCE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKETLKLD---TTERRIMETR------GRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~~~l~---~~~~~~~~~~------~~~~~l~~~~~~~~~~g   77 (106)
                      |...+..+.+..|+++.|.|.+.| .|   .|.+.|++++....   ...++.....      .....|.|.++...|.|
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g-~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKA-EDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEEC-CCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EeECCceEEEeCCCEEEEEEEEcc-CCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            344566788889999999999999 87   57999999864321   1223322111      12346999999999999


Q ss_pred             eeEEEEEcCCCcceEEEEEEEeCCCCCC
Q psy17205         78 NYSCVAENSMGKTRQYLELSGKYPNAQE  105 (106)
Q Consensus        78 ~y~C~~~~~~~~~~~~~~l~~~~~~~~~  105 (106)
                      .|.|.+.|..|...+.+.|.+..++...
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCCCSC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            9999999999998887777765554443

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.8e-16  Score=75.35  Aligned_cols=82  Identities=20%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      ..+..+.+..|+.+.|.|.+.++.|.+.+.|++++..+.... .. ...+   .|.|.++...|.|.|.|.+.|..|...
T Consensus         7 ~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~-~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~   81 (89)
T d1gl4b_           7 EEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AM-DFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQ   81 (89)
T ss_dssp             CSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EE-EETT---EEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-cE-eece---EEEEecCCcccCEEEEEEEEECCCEEE
Confidence            345668888999999999997526789999999887665542 22 2223   699999999999999999999999888


Q ss_pred             EEEEEEE
Q psy17205         92 QYLELSG   98 (106)
Q Consensus        92 ~~~~l~~   98 (106)
                      ..+.|.+
T Consensus        82 ~~~~l~V   88 (89)
T d1gl4b_          82 GTATLHV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.4e-16  Score=74.25  Aligned_cols=83  Identities=17%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc--CcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....+......  .....|.|.++...|.|.|.|.+.|..|...
T Consensus         3 P~~~~v~~G~~~~l~C~v~g-~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEG-MEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEES-CSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CeeEEEcCCCeEEEEEEEEe-cCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            45678889999999999999 99999999999998876654433322  2345799999999999999999999988643


Q ss_pred             -EEEEEE
Q psy17205         92 -QYLELS   97 (106)
Q Consensus        92 -~~~~l~   97 (106)
                       ..+.|.
T Consensus        82 S~~~~l~   88 (91)
T d1rhfa1          82 SQPVWLT   88 (91)
T ss_dssp             CCCEEEE
T ss_pred             EEEEEEE
Confidence             334443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=80.19  Aligned_cols=85  Identities=21%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-----------------------------CCEEEEEcCcE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-----------------------------ERRIMETRGRR   63 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-----------------------------~~~~~~~~~~~   63 (106)
                      .+..+.+..|+.+.|.|...| .|.|.+.|++++..+...                             .++.+......
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G-~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   93 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISG-DPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDR   93 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCS-BSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTE
T ss_pred             CCCCEEEEcCCeEEEEEEEEE-ecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCE
Confidence            455788999999999999999 999999999876443211                             12344444556


Q ss_pred             EEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         64 HTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        64 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      ..|.|.++...|.|.|.|.+.|..|.....+.|.+
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          94 SIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            78999999999999999999999999888877764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.7e-16  Score=73.28  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=64.2

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYL   94 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   94 (106)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+....   .........|.|.++...|.|.|.|.+.|..|.....+
T Consensus         9 ~~~~~~~G~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~   84 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTG-CESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI   84 (90)
T ss_dssp             SEEEEETTSCEEEEEEEES-CSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccC-CCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEE
Confidence            3456678999999999999 9999999998876554331   22224456899999999999999999999999888777


Q ss_pred             EEEE
Q psy17205         95 ELSG   98 (106)
Q Consensus        95 ~l~~   98 (106)
                      .|.+
T Consensus        85 ~v~V   88 (90)
T d1vcaa2          85 QVEI   88 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.6e-16  Score=73.11  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |..+......+.+..|+++.|.|.+. + .|.|.+.|++.+..+..     .........|.|.++...|.|.|.|.+.|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g-~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn   76 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACA-DRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSC   76 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCS-STTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCC-CCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEe
Confidence            34455555567788999999999886 5 78999999987655432     12223456899999999999999999999


Q ss_pred             CCCcceEEEEEE
Q psy17205         86 SMGKTRQYLELS   97 (106)
Q Consensus        86 ~~~~~~~~~~l~   97 (106)
                      ..|..+..+.|.
T Consensus        77 ~~g~~~~s~~l~   88 (90)
T d1gsma1          77 GGRTFQHTVQLL   88 (90)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            988777766654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=1.7e-16  Score=75.91  Aligned_cols=87  Identities=14%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .|...+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....+....... ...|.|.++...|.|.|.|.+.|..+
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g-~p~p~v~W~~~~~~i~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVS-SLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEEC-SSCCEEEEEETTEEGGGGCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEee-cCCCeEEEEEcCcccccccceeeeeee-eeeEEECCCCHHhCEEEEEEEEECcC
Confidence            4555667788999999999999999 999999999999888765432222222 12599999999999999999999776


Q ss_pred             cceEEEEEE
Q psy17205         89 KTRQYLELS   97 (106)
Q Consensus        89 ~~~~~~~l~   97 (106)
                      .......+.
T Consensus        81 ~~~~~~~i~   89 (92)
T d1epfa2          81 GEINFKDIQ   89 (92)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            655544444

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.4e-16  Score=73.08  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.|...+..+.+..|+.+.|.|.+.| .|.| .+.|++++..+.....      .   .+.+......|.|.|.|.+.|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g-~P~P~~i~W~k~g~~i~~~~~------~---~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAP------S---PSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEEC-SSSCCEEEEEETTEECSCSEE------S---SEEEEECCCSSCEEEEEEEEET
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEec-CCcceEEEEEECCEECCCCCC------c---ceEEecCCccccEEEEEEEEcC
Confidence            45666777888899999999999999 9988 8999999988765421      1   2445555567999999999999


Q ss_pred             CCcce
Q psy17205         87 MGKTR   91 (106)
Q Consensus        87 ~~~~~   91 (106)
                      .|...
T Consensus        72 ~G~~~   76 (85)
T d1rhfa2          72 KGLAS   76 (85)
T ss_dssp             TEEEE
T ss_pred             CCcEE
Confidence            88543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.9e-15  Score=73.72  Aligned_cols=92  Identities=14%  Similarity=0.004  Sum_probs=70.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCCEEcC-C--CCCEEEEEc------CcEEEEEEcccCCCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKETLKLD-T--TERRIMETR------GRRHTLVIRKVLFTD   75 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~~~l~-~--~~~~~~~~~------~~~~~l~~~~~~~~~   75 (106)
                      +.|...+..+.+..|+++.|.|.+.+ .|   .|.+.|++++.... .  ..++.....      .....|.|.+++..|
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g-~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAG-ASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEEC-CSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecC-CCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHH
Confidence            45666777888999999999999999 88   57899998874322 1  123322211      123469999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEEEeC
Q psy17205         76 FGNYSCVAENSMGKTRQYLELSGKY  100 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~~~~  100 (106)
                      .|.|.|.+.|..|...+.+.|.+..
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          84 TGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             CcEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999999999999988888654

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.68  E-value=9e-16  Score=75.34  Aligned_cols=91  Identities=23%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             cceeecc-CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC----CC--CEEE------EE-cCcEEEEEEcccC
Q psy17205          7 TLKLDTT-ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT----TE--RRIM------ET-RGRRHTLVIRKVL   72 (106)
Q Consensus         7 ~~~~~~~-~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~----~~--~~~~------~~-~~~~~~l~~~~~~   72 (106)
                      .|.+... +.++.+..|+.+.|.|.+.+ .|.|.+.|++++.....    ..  ....      .. ......|.|.++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYS-DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEEC-SSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEE-cCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            3556543 57788999999999999999 99999999987533211    10  1111      01 1224579999999


Q ss_pred             CCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         73 FTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      ..|.|.|.|.+.|..|.....+.|.+
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999999888777764

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=75.45  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=64.0

Q ss_pred             cccceeeccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          5 KETLKLDTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         5 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      ...|.+......+.+..|+.+.|.|.+.+ .+. +.+.|++++..+....+.......   .|.|.++..+|.|.|.|.+
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g-~~~~~~i~W~k~~~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a   79 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVE-PEDNATVHWVLRKPAAGSHPSRWAGMGR---RLLLRSVQLHDSGNYSCYR   79 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSC-TTCCSEEEEEEECSSSSCCCEEEEEESS---EEEECSCCGGGCEEEEEES
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeec-CCCCceEEEEEccccccceeeEEecCCC---EEEECCCChhcCEEEEEEE
Confidence            45677777788889999999999999988 665 589999999888766544333333   7999999999999999999


Q ss_pred             EcCC
Q psy17205         84 ENSM   87 (106)
Q Consensus        84 ~~~~   87 (106)
                      .|..
T Consensus        80 ~n~~   83 (93)
T d1n26a1          80 AGRP   83 (93)
T ss_dssp             SSSC
T ss_pred             CCcc
Confidence            8754

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=2.3e-16  Score=75.71  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.+...+..+.+..|+.+.|.|.+.+ .|.| .+.|++++..+.......... ....+|.|.++...|.|.|.|.+.|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g-~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecC-CCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEe
Confidence            357777788889999999999999999 8866 799999998886554322222 2234699999999999999999999


Q ss_pred             CCCcce
Q psy17205         86 SMGKTR   91 (106)
Q Consensus        86 ~~~~~~   91 (106)
                      ..|...
T Consensus        80 ~~G~~~   85 (94)
T d1biha1          80 PAGVAS   85 (94)
T ss_dssp             TTEEEE
T ss_pred             CCCEEE
Confidence            988644

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6e-15  Score=72.18  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE----c--------CcEEEEEEcccCCCCCE-eeEE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET----R--------GRRHTLVIRKVLFTDFG-NYSC   81 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~----~--------~~~~~l~~~~~~~~~~g-~y~C   81 (106)
                      ..+.+..|+.+.|.|.+.+ .|.|.+.|++++..+..........    .        .....|.|.++...|.| .|.|
T Consensus        10 ~~i~v~~G~~v~l~C~v~g-~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C   88 (107)
T d1iray3          10 ETMEVDLGSQIQLICNVTG-QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTC   88 (107)
T ss_dssp             EEEECCTTCCEEEEEEEEE-CTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEE
T ss_pred             CEEEEeCCCEEEEEEEecc-CCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEE
Confidence            3466778999999999999 9999999999998876543221111    0        11347999999999999 5999


Q ss_pred             EEEcCCCcceEEEEEE
Q psy17205         82 VAENSMGKTRQYLELS   97 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~   97 (106)
                      .+.|.+|...+.+.|.
T Consensus        89 ~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          89 FAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEECSSCEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEE
Confidence            9999999988877775

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=8.3e-15  Score=70.52  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCC-CeEEEeeC-CEEcC-CCCCEEEE-EcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCR-PQVIWYKE-TLKLD-TTERRIME-TRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~-p~~~w~~~-~~~l~-~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ...+....+..|+.+.|.|.+.+ .|. +.+.|+++ +..+. ...++... .......|.|.++...|.|.|.|.+.|.
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g-~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECC-CSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEECCCEEEccCCcEEEEEEEEe-ccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            34455677889999999999998 874 79999984 44444 34455433 3345678999999999999999999999


Q ss_pred             CCcce-EEEEEE
Q psy17205         87 MGKTR-QYLELS   97 (106)
Q Consensus        87 ~~~~~-~~~~l~   97 (106)
                      .|... +.+.|.
T Consensus        83 ~G~~~~~tv~l~   94 (97)
T d1epfa1          83 DGTQSEATVNVK   94 (97)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            88654 455554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.7e-17  Score=75.82  Aligned_cols=74  Identities=12%  Similarity=-0.026  Sum_probs=60.1

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      .+..+.+..|+.+.|.|.+.| .|.|.+.|++++..+....             .+..+...|.|.|.|.+.|..|..+.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G-~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~   75 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWG-NPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTR   75 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEE-ESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeE-cCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEE
Confidence            356788889999999999999 9999999999886555432             22356678999999999999998887


Q ss_pred             EEEEEEeC
Q psy17205         93 YLELSGKY  100 (106)
Q Consensus        93 ~~~l~~~~  100 (106)
                      .+.|.+..
T Consensus        76 ~~~l~V~~   83 (84)
T d2oz4a3          76 EVTVNVLS   83 (84)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            77777544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.4e-16  Score=73.28  Aligned_cols=73  Identities=16%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLEL   96 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l   96 (106)
                      ..+..|+.+.|.|.+.| .|.|.+.|++++..+..       .   ...|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus         9 ~~v~~G~~~~L~C~~~g-~p~P~i~W~~~~~~~~~-------~---~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v   77 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPP-GSSPSVQCRSPRGKNIQ-------G---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI   77 (84)
T ss_dssp             SCEETTCCEEEEEECCT-TCCCEEEEECTTCCEEE-------E---SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEECCCeEEEEEEeEc-CCchheEEEeeccccee-------e---eeeeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence            35679999999999999 99999999987643221       1   1268999999999999999999999888877777


Q ss_pred             EEeC
Q psy17205         97 SGKY  100 (106)
Q Consensus        97 ~~~~  100 (106)
                      .+..
T Consensus        78 ~V~~   81 (84)
T d2nxyb2          78 VVLA   81 (84)
T ss_dssp             CEEC
T ss_pred             EEEe
Confidence            6543

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.6e-15  Score=71.86  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE--c--CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET--R--GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~--~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      +....+.|.+.| .|.|.+.|++++..+....+.....  .  .....|.|.++...|.|.|.|.+.|..|.....+.|.
T Consensus        17 ~~~~~i~~~v~G-~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          17 RLEHCIEFVVRG-NPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCEEEEEEEEEC-SSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEEE-eCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            444567788889 9999999999999988766554332  1  2234699999999999999999999999998888887


Q ss_pred             EeCC
Q psy17205         98 GKYP  101 (106)
Q Consensus        98 ~~~~  101 (106)
                      +..+
T Consensus        96 V~~~   99 (105)
T d1wwca_          96 FLKE   99 (105)
T ss_dssp             CSCC
T ss_pred             EEeC
Confidence            5443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-17  Score=78.50  Aligned_cols=88  Identities=17%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCE-eeEEEEEc
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFG-NYSCVAEN   85 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~   85 (106)
                      .|.+........+..|+.+.|.|.+.| .|.|.+.|++++..+.....  .........|.|.++...|.| .|.|.+.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g-~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N   78 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEG-RGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEN   78 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEEC-SSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccC-CCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEc
Confidence            456666666778889999999999999 99999999999865543211  111233557999999999998 79999999


Q ss_pred             CCCcceEEEEEE
Q psy17205         86 SMGKTRQYLELS   97 (106)
Q Consensus        86 ~~~~~~~~~~l~   97 (106)
                      ..|.....+.|.
T Consensus        79 ~~G~~~~s~~l~   90 (92)
T d2ifga1          79 DVGRAEVSVQVN   90 (92)
T ss_dssp             TTEECCEEECCC
T ss_pred             CCCEEEEEEEEE
Confidence            999887766553

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.8e-15  Score=71.02  Aligned_cols=80  Identities=14%  Similarity=0.178  Sum_probs=64.5

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-----CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEE
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-----GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLE   95 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   95 (106)
                      .+....+.|.+.| .|.|.+.|++++..+....+......     .....|.|.++...|.|.|.|.+.|..|.....+.
T Consensus        15 ~~~~~~i~~~v~G-~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTVKG-NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEEC-SSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cceeEEEEEEEEE-eCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEE
Confidence            5667788999999 99999999999999987655443221     12346999999999999999999999999988888


Q ss_pred             EEEeCC
Q psy17205         96 LSGKYP  101 (106)
Q Consensus        96 l~~~~~  101 (106)
                      |.+...
T Consensus        94 v~V~~~   99 (103)
T d1wwbx_          94 AHFMGW   99 (103)
T ss_dssp             ECCSCC
T ss_pred             EEEEeC
Confidence            875444

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=6.8e-16  Score=74.43  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             cceeeccCCeEEeecC---CeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          7 TLKLDTTERRIIETRG---RRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g---~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +|.|...+....+..|   +.+.|.|.+.| .|.|.+.|++++..+....+....... ...+.+..+...|.|.|.|.+
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g-~P~p~v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARA-NPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEE-ESCCEEEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEE-eCCCEEEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEE
Confidence            4667666776666555   68999999999 999999999999988765333222222 235778888889999999999


Q ss_pred             EcCCCcce
Q psy17205         84 ENSMGKTR   91 (106)
Q Consensus        84 ~~~~~~~~   91 (106)
                      .|..|...
T Consensus        82 ~N~~G~~~   89 (97)
T d1cs6a1          82 TNARGTVV   89 (97)
T ss_dssp             EETTEEEE
T ss_pred             EECCCEEE
Confidence            99988653

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.5e-15  Score=73.08  Aligned_cols=76  Identities=18%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc-------CcEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         26 TLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR-------GRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        26 ~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      .+.|.+.| .|.|.+.|++++..+....+......       .....|.|.++...|.|.|.|.+.|.+|...+.+.|.+
T Consensus        19 ci~~~v~G-~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          19 CIPFSVDG-QPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (107)
T ss_dssp             EEEEEECC-SSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEE-ecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEE
Confidence            35568889 99999999999999887655543321       12346999999999999999999999999998888885


Q ss_pred             eCCC
Q psy17205         99 KYPN  102 (106)
Q Consensus        99 ~~~~  102 (106)
                      ..+|
T Consensus        98 ~~~P  101 (107)
T d1he7a_          98 MDNP  101 (107)
T ss_dssp             CSCT
T ss_pred             EcCC
Confidence            5554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=71.37  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=60.6

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .....+.+..|+++.|.|.+ + .|.+.+.|++++..+....  ++.....+..+.|.|.++...|.|.|.|.+.|.
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-S-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-S-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             cCCCCEEEeCCCcEEEEEEE-C-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc
Confidence            44566888999999999998 5 5888999999998876543  456666667788999999999999999998774

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.62  E-value=1.7e-15  Score=71.79  Aligned_cols=77  Identities=10%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce-EEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR-QYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~   95 (106)
                      ..+.+|+.+.|.|.+.++.|.+.+.|++++..+...        .....|.|..+...|.|.|.|.+.|..+... ..+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            456799999999999752566789999998765432        2233689999999999999999999877654 3566


Q ss_pred             EEEeCC
Q psy17205         96 LSGKYP  101 (106)
Q Consensus        96 l~~~~~  101 (106)
                      |.+..|
T Consensus        82 l~V~~P   87 (88)
T d2fcba2          82 ITVQAP   87 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            665544

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.8e-15  Score=72.07  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=65.7

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE-EE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ-YL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~-~~   94 (106)
                      ...+..|+++.|.|.+.+  +.+.+.|++++..+....+......  ...|.|.++...|.|.|.|.+.|..|...+ .+
T Consensus        12 ~~~v~~g~~v~l~C~~~~--~~~~v~W~~~~~~l~~~~~~~~~~~--~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND--IGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             CSEECTTSCEEEEECCCC--SSCEEEEEETTEECCCCTTEEEETT--TTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             ceEEeCCCeEEEEEccCC--CCCCEEEEEeeeecccccceeccCC--ceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            355778999999998765  5689999999999988766654332  347999999999999999999999887653 56


Q ss_pred             EEEEeCCC
Q psy17205         95 ELSGKYPN  102 (106)
Q Consensus        95 ~l~~~~~~  102 (106)
                      .|.+..+|
T Consensus        88 ~L~V~~~P   95 (96)
T d1l6za2          88 KLDIIFDP   95 (96)
T ss_dssp             EEEECCSC
T ss_pred             EEEEEcCC
Confidence            67665554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.60  E-value=2.3e-16  Score=75.01  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ......+.+..|+++.|.|.. + .|.|.+.|++++..+....++.+...+..+.|.|.++...|.|.|.|.+.|..
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-S-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-S-SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-C-CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE
Confidence            344567889999999999997 5 68899999999999988888888887778899999999999999999987753

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-14  Score=70.67  Aligned_cols=87  Identities=18%  Similarity=0.159  Sum_probs=62.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCC---CCCEEEEEc--CcEEEEEEcccCCCCCEeeEEEE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDT---TERRIMETR--GRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~---~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +........+..|+.+.|.|.+.+ .| .|.+.|++++..+..   .........  .....|.|.++...|.|.|.|.+
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g-~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKY-CANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEEC-SSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEe-eCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEE
Confidence            344555678889999999999999 88 489999998754432   112222221  22446999999999999999999


Q ss_pred             EcCCCcceE-EEEEE
Q psy17205         84 ENSMGKTRQ-YLELS   97 (106)
Q Consensus        84 ~~~~~~~~~-~~~l~   97 (106)
                      .|..|.... .+.|.
T Consensus        85 ~N~~G~~~s~~~~l~   99 (104)
T d2aw2a1          85 NFQSNLIESHSTTLY   99 (104)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EcCCCeEEEEEEEEE
Confidence            999886443 34443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-14  Score=68.59  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce-EEEE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR-QYLE   95 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~   95 (106)
                      ..+..|+.+.|.|.+.++.+...+.|++++..+.....        ...|.|..+...|.|.|.|.+.|..+... ..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            34679999999999976235568999999988765421        23689999999999999999999876543 3456


Q ss_pred             EEEeCC
Q psy17205         96 LSGKYP  101 (106)
Q Consensus        96 l~~~~~  101 (106)
                      |.+..+
T Consensus        82 i~V~~~   87 (89)
T d1f2qa2          82 ITVIKA   87 (89)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            665544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.8e-15  Score=73.87  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=58.4

Q ss_pred             CeEEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceEE
Q psy17205         15 RRIIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQY   93 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   93 (106)
                      ..+.+..|+.+.|.|.+ .+ .|.|.+.|++++..+................|.|.++...|.|.|.|.+.|..|.....
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPH-YPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSE-ESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCC-CCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            34778899999999987 56 89999999999865543222111111223369999999999999999999988776654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-14  Score=67.80  Aligned_cols=77  Identities=21%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             ceeecc-CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC-CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTT-ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT-ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~-~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      +.|... ...+.+..|+.+.|.|.. + .|.+.+.|++++..+... .++.+......+.|.|.++...|.|.|.|.+.|
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v-~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVEL-A-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEEC-S-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEE-C-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            344433 334567899999999997 5 588899999999888654 455666666678899999999999999999876


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        84 ~   84 (94)
T d1pd6a_          84 E   84 (94)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=69.21  Aligned_cols=76  Identities=12%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce-EEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR-QYL   94 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~   94 (106)
                      ...+.+|+.+.|.|.+.++.|.+.+.|++++..+...        .....+.|.++...|.|.|.|.+.|..+... ..+
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~--------~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v   82 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV   82 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee--------ccccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence            3456799999999998752566789999998765321        1122688999999999999999999876543 345


Q ss_pred             EEEEe
Q psy17205         95 ELSGK   99 (106)
Q Consensus        95 ~l~~~   99 (106)
                      .|.+.
T Consensus        83 ~itV~   87 (89)
T d1fnla2          83 NITIT   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-14  Score=68.70  Aligned_cols=90  Identities=12%  Similarity=0.002  Sum_probs=61.4

Q ss_pred             cceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEe--eCCEEcCCCCCEE-EEEcCcEEEEEEcccCCCCCEeeEEEE
Q psy17205          7 TLKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWY--KETLKLDTTERRI-METRGRRHTLVIRKVLFTDFGNYSCVA   83 (106)
Q Consensus         7 ~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~--~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~y~C~~   83 (106)
                      +|.|. ...++.+..|+++.|.|.+.| .|.|.+.|+  .++.......+.. .........|.|.++...|.|.|.|.+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g-~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIG-RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEES-CCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEee-cCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            46675 467788999999999999999 887765543  2222222221221 222223457999999999999999999


Q ss_pred             EcCCCcceEE-EEEEE
Q psy17205         84 ENSMGKTRQY-LELSG   98 (106)
Q Consensus        84 ~~~~~~~~~~-~~l~~   98 (106)
                      .|..|...+. ..|.+
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999876543 35443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.3e-13  Score=65.86  Aligned_cols=84  Identities=15%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcC-----------C-CCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD-----------T-TERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~-----------~-~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      .+......+.+..|+.+.|.|.+.+ .|.|.+.|++.+....           . ..+.. ...   .+|.|.++...|.
T Consensus         3 sV~t~~~~v~v~~G~~v~l~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~tL~I~~v~~~D~   77 (102)
T d1f97a1           3 SVYTAQSDVQVPENESIKLTCTYSG-FSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT-FSS---SGITFSSVTRKDN   77 (102)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEES-CSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE-EET---TEEEESCCCGGGC
T ss_pred             CEEccCCcEEEeCCCEEEEEEEcCC-CCCCeEEEEeccccceeeeccccccccceeeEEE-ecC---CEEEEeECCccCC
Confidence            4455666788899999999999999 9999999987542110           0 11111 111   2699999999999


Q ss_pred             EeeEEEEEcCCCcceEEEEEE
Q psy17205         77 GNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        77 g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      |.|.|.+.|..|.....+.+.
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~   98 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIH   98 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEE
Confidence            999999999998877655544

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.8e-14  Score=70.76  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=58.0

Q ss_pred             EeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCCCEE--------EEEcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         18 IETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTERRI--------METRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+..|+.+.|.|.+. + .|.+.+.|++++..+.......        .........|.|.++...|.|.|.|.+.|..|
T Consensus        13 ~v~~G~~v~L~C~~~~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDG-SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             EEETTSCEEEEEECSCC-BSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             EEecCCeEEEEEEeecC-CCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            456899999999986 6 8999999999988765432211        11222233689999999999999999999998


Q ss_pred             cceE--EEEEEE
Q psy17205         89 KTRQ--YLELSG   98 (106)
Q Consensus        89 ~~~~--~~~l~~   98 (106)
                      ....  .+.+.+
T Consensus        92 ~~~~s~~v~l~V  103 (110)
T d1f97a2          92 TAMRSEAAHMDA  103 (110)
T ss_dssp             CCEECCCEEEEE
T ss_pred             cEEEEEEEEEEE
Confidence            7654  344443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.2e-15  Score=71.76  Aligned_cols=86  Identities=15%  Similarity=0.156  Sum_probs=64.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCC--CCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcce
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDT--TERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTR   91 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   91 (106)
                      +..+....|+.+.|.|.+..+.+.+.+.|++++..+..  ..+..+...  ...|.|.++...|.|.|.|.+.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE--TTEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc--CCEEEeccceecCCEEEEEEEECCCCeEE
Confidence            34467788999999998863278899999998854432  222212111  12799999999999999999999999988


Q ss_pred             EEEEEEEeCC
Q psy17205         92 QYLELSGKYP  101 (106)
Q Consensus        92 ~~~~l~~~~~  101 (106)
                      ..+.|.+...
T Consensus        87 ~~~~L~V~~~   96 (101)
T d1iray1          87 IKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEeC
Confidence            8888876543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-13  Score=66.46  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             EEeecCCeEEEEE------EEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         17 IIETRGRRHTLIF------FFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        17 ~~~~~g~~~~~~c------~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +.+..|....|.|      ...+ .|.|.+.|++++..+....+......+   .|.|.++...|.|.|.|.+.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~-~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNEN-NELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTT-TBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCC-CCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCC
Confidence            5677899999999      4456 889999999999998765444333433   6999999999999999999987654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=69.71  Aligned_cols=91  Identities=13%  Similarity=0.037  Sum_probs=63.9

Q ss_pred             ecccceeeccCCeEEeecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205          4 YKETLKLDTTERRIIETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      |..++.+...+....+..|+.++|.|.+.++.|.+  .+.|++++..+.....   ........|.+......|.|.|.|
T Consensus         1 y~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC   77 (103)
T d1iama1           1 YWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSC   77 (103)
T ss_dssp             EBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEE
T ss_pred             CCCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEE
Confidence            44566666666666778999999999998734555  5789999877643211   011234468888888889999999


Q ss_pred             EEEcCCCcceEEEEEE
Q psy17205         82 VAENSMGKTRQYLELS   97 (106)
Q Consensus        82 ~~~~~~~~~~~~~~l~   97 (106)
                      .+.|..|.....+.+.
T Consensus        78 ~A~n~~g~~~~~~~~~   93 (103)
T d1iama1          78 RTELDLRPQGLELFEN   93 (103)
T ss_dssp             EEEEECGGGTSCEEEE
T ss_pred             EEEeCCCCccCeEeee
Confidence            9999887655444333

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.51  E-value=1.2e-13  Score=64.87  Aligned_cols=77  Identities=16%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCC-eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRP-QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p-~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+...+....+..|+.+.|.|.+.+ .+.+ .+.|++++..+....          ..|.|..+...|.|.|.|.+.|.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~-~~~~~~~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTH-SPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSS-CCCTTCCEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTS
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEee-ccceeEEEeecccccccccc----------cceEEeeccccCCcEEEEECCCC
Confidence            45556666677889999999999988 7765 578899998876542          14788899999999999999887


Q ss_pred             CCcceEEEE
Q psy17205         87 MGKTRQYLE   95 (106)
Q Consensus        87 ~~~~~~~~~   95 (106)
                      .+.....+.
T Consensus        74 ~~S~~v~l~   82 (85)
T d2fcba1          74 SLSDPVHLT   82 (85)
T ss_dssp             BCCCCEEEE
T ss_pred             cccccEEEE
Confidence            555444443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.3e-15  Score=72.70  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             ecccceeeccCCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCCEEcCCC--CCEEEEEc----CcEEEEEEcccCCCC-
Q psy17205          4 YKETLKLDTTERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKETLKLDTT--ERRIMETR----GRRHTLVIRKVLFTD-   75 (106)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~~~l~~~--~~~~~~~~----~~~~~l~~~~~~~~~-   75 (106)
                      ...+|.+.. ...+.+..|+.+.|.|.+.+ .+ .+.+.|++++..+...  .++.....    +....|.|.++...| 
T Consensus         4 V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           4 VNGPPIISS-TQTQHALHGEKGQIKCFIRS-TPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             CCSSCCEEE-ECCCCCCTTSCCCCCEEECC-SSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             EecCCEEec-CCCEEEecCCEEEEEEEeec-CCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence            345666653 44566778999999999988 64 5578999998777643  23333221    223469999999998 


Q ss_pred             CEeeEEEEEcCCCcceEEEEEEEeCCC
Q psy17205         76 FGNYSCVAENSMGKTRQYLELSGKYPN  102 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~~~~~~  102 (106)
                      .|.|.|.+.|..|.....+.|.+....
T Consensus        82 ~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          82 QTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            689999999999999888888765443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.3e-14  Score=67.57  Aligned_cols=85  Identities=15%  Similarity=0.289  Sum_probs=62.5

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC------------CCEEEEEcCcEEEEEEcccCCCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT------------ERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~------------~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ..+......+.+..|+++.|.|.+.+ .|.|.+.|++++..+...            .+... .   ...|.|.++...|
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g-~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~L~I~~v~~~D   79 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSG-FSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-L---PTGITFKSVTRED   79 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEES-CSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-E---TTEEECSCCCTTS
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCC-CCCCeeEEEeeeeceeeeeeccceeeccccceeee-c---CceEEEecccccc
Confidence            34455566677889999999999999 999999999865322110            11111 1   1269999999999


Q ss_pred             CEeeEEEEEcCCCcceEEEEEE
Q psy17205         76 FGNYSCVAENSMGKTRQYLELS   97 (106)
Q Consensus        76 ~g~y~C~~~~~~~~~~~~~~l~   97 (106)
                      .|.|.|.+.|..|.....+.+.
T Consensus        80 ~G~Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             CSEEEEEEEETTSSCEECCEEE
T ss_pred             eeeEEEEEEECCCCEEEEEEEE
Confidence            9999999999998887654443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=68.44  Aligned_cols=73  Identities=19%  Similarity=0.217  Sum_probs=56.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC-CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE-RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      +...+..|+++.|.|.+.+  +.|.+.|++++..+.... ++.....+   .|.|.++...|.|.|.|.+.|..+....
T Consensus         5 ~~~~~~~G~~~~l~C~~~g--~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS--NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC--TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             hheeEeCCCEEEEEEEeec--cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            3467889999999999987  567999999987776532 22222222   5999999999999999999998876554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-15  Score=73.39  Aligned_cols=76  Identities=22%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             EEeecCCeEEEEEEEe-ecCCCCeEEEeeCCEEcCCCCCEEEE-------EcCcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFFH-FAFCRPQVIWYKETLKLDTTERRIME-------TRGRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~-~~~p~p~~~w~~~~~~l~~~~~~~~~-------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.|.|.+. + .|.|.+.|++++..+....+....       .......|.|.++...|.|.|.|.+.|..|
T Consensus        12 ~~v~~G~~v~l~C~~~~g-~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDG-SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             SEEETTSCEEECCCCCSC-BSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CEEecCCcEEEEEEeecC-CCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            4567899999999985 6 899999999998776543221110       111223688999999999999999999998


Q ss_pred             cceEE
Q psy17205         89 KTRQY   93 (106)
Q Consensus        89 ~~~~~   93 (106)
                      ....+
T Consensus        91 ~~~~s   95 (104)
T d1nbqa2          91 TPMTS   95 (104)
T ss_dssp             CCEEC
T ss_pred             ceEEE
Confidence            87654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=3.2e-13  Score=63.26  Aligned_cols=73  Identities=12%  Similarity=0.107  Sum_probs=56.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +.+...+....+..|++++|.|.+.+ .+.+. +.|++++..+...          ...|.|.++...|.|.|.|.+.+.
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~-~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~s   74 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAY-SPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLS   74 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCC-BTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEecc-CCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccCC
Confidence            45556666677889999999999988 77775 5567887665443          226899999999999999998876


Q ss_pred             CCcce
Q psy17205         87 MGKTR   91 (106)
Q Consensus        87 ~~~~~   91 (106)
                      .....
T Consensus        75 ~~S~~   79 (84)
T d1fnla1          75 TLSDP   79 (84)
T ss_dssp             CCCCC
T ss_pred             Ccccc
Confidence            54443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=63.42  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCe-EEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQ-VIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~-~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+....+..|+.+.|.|.+.+ .+.+. ..|++++..+....          ..|.|.++...|.|.|.|.+.+.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~-~~~~~~~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNN-FFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTC-C----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTS
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEee-eeeecceeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCC
Confidence            34555566667789999999999998 77774 55678887765532          26899999999999999999887


Q ss_pred             CCcceEEEE
Q psy17205         87 MGKTRQYLE   95 (106)
Q Consensus        87 ~~~~~~~~~   95 (106)
                      .+.....+.
T Consensus        71 ~~S~~v~l~   79 (82)
T d1f2qa1          71 NESEPVYLE   79 (82)
T ss_dssp             SCCCCEEEE
T ss_pred             CCcccEEEE
Confidence            555443433

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=6.6e-13  Score=65.23  Aligned_cols=78  Identities=21%  Similarity=0.255  Sum_probs=56.3

Q ss_pred             EEeecCCeEEEEEEE-eecCCCCeEEEeeCCEEcCCC-------CCEEEEEcCcEEEEEEcccCCCCCE---eeEEEEEc
Q psy17205         17 IIETRGRRHTLIFFF-HFAFCRPQVIWYKETLKLDTT-------ERRIMETRGRRHTLVIRKVLFTDFG---NYSCVAEN   85 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~-~~~~p~p~~~w~~~~~~l~~~-------~~~~~~~~~~~~~l~~~~~~~~~~g---~y~C~~~~   85 (106)
                      ..+.+|+.+.|.|.+ .| .|.|.+.|++++..+...       .+.....   ...|.|.++...|.|   .|.|.+.|
T Consensus        12 ~t~~EG~~~~L~C~v~~G-~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNA-YPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             ECCBTTEEEEECCCCCEE-ESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             ccccCCCeEEEEEEcccC-CCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEe
Confidence            346689999999986 78 999999999986544321       1122222   225888888877665   69999999


Q ss_pred             CCCcceEEEEEEE
Q psy17205         86 SMGKTRQYLELSG   98 (106)
Q Consensus        86 ~~~~~~~~~~l~~   98 (106)
                      .+|.....+.+..
T Consensus        88 ~~g~~~~~~~~~~  100 (111)
T d1biha2          88 AAVDEEVVLVEYE  100 (111)
T ss_dssp             TTCSSCEEEEEEE
T ss_pred             CCCCceEEEEEEE
Confidence            9998887665553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.6e-12  Score=60.57  Aligned_cols=74  Identities=15%  Similarity=0.061  Sum_probs=52.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCC--CCE--------EEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTT--ERR--------IMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~--~~~--------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      .+....|++++|.|.. . .|.+.+.|++++..+...  ...        ..........|+|.++...|.|.|.|.+.|
T Consensus         4 ~v~~~~G~sVtl~c~~-~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEEECCCEEEEecC-C-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            3567799999999976 4 488899999988654211  000        111112234799999999999999999888


Q ss_pred             CCCcce
Q psy17205         86 SMGKTR   91 (106)
Q Consensus        86 ~~~~~~   91 (106)
                      ..+...
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            765444

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=6.1e-10  Score=55.34  Aligned_cols=92  Identities=21%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeec--CCCCeEEEeeCCEE-----------cC------CCCCEEEEEc---CcEEEEE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFA--FCRPQVIWYKETLK-----------LD------TTERRIMETR---GRRHTLV   67 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~--~p~p~~~w~~~~~~-----------l~------~~~~~~~~~~---~~~~~l~   67 (106)
                      +..+...+.+..|+++.|.|.....  .....+.|++.+..           ..      ...+..+...   ....+|.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   84 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR   84 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence            4444555788899999999987540  22346899875421           00      0112222221   2356899


Q ss_pred             EcccCCCCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         68 IRKVLFTDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      |.++...|.|.|.|.+.+..+.....+.|.+..|
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            9999999999999999998777777777887655

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.4e-12  Score=62.14  Aligned_cols=76  Identities=11%  Similarity=0.023  Sum_probs=50.3

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCCEEcCCCCCEEE--EEcCcEEEEEEcccCCCCCEeeEEEEEcCCCcceE
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKETLKLDTTERRIM--ETRGRRHTLVIRKVLFTDFGNYSCVAENSMGKTRQ   92 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   92 (106)
                      ..+..|+.++|.|.+.++.|  .+.+.|++++..+........  ........|.+......|.|.|.|.+.|..+....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            35668999999999987344  347899999987643211100  01112335666666667788999999998765443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=1.5e-09  Score=51.81  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             eEEeecCCeEEEEEEEee-cCCCCeEEEeeCCEEcCC---C-------CCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         16 RIIETRGRRHTLIFFFHF-AFCRPQVIWYKETLKLDT---T-------ERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~-~~p~p~~~w~~~~~~l~~---~-------~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      .+....|+++.|.|.... ......+.|++++..+..   .       .+.....   +.+|.|.++...|+|.|.|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~---ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA---NGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT---TSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC---CccEEEeCCCHHHCEEEEEEEE
Confidence            355678999999996432 022357999998865521   1       1111111   2369999999999999999999


Q ss_pred             cCCCcc--eEEEEEEE
Q psy17205         85 NSMGKT--RQYLELSG   98 (106)
Q Consensus        85 ~~~~~~--~~~~~l~~   98 (106)
                      +..|..  ...+.|.+
T Consensus        81 ~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          81 STNGTRILNKALDLRI   96 (98)
T ss_dssp             ETTCCEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEE
Confidence            888775  44566654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.95  E-value=1.8e-08  Score=48.75  Aligned_cols=75  Identities=25%  Similarity=0.309  Sum_probs=55.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ++..+..+.+..|++++|.|.... .....+.||+..  ..   +         ....++..........|.|.+++.+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQ-SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCeEEECCCCCEEEEEEecC-CCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            345677788999999999998876 566779998742  11   0         11235655556667889999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      +|.|.|...+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1j1pl_          83 FGMYFCQQAN   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEcCC
Confidence            9999997654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.95  E-value=2.4e-08  Score=48.23  Aligned_cols=75  Identities=19%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEE---c---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLK---L---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~---l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ++..+..+.+..|++++|.|.... .....+.||+.  +..   +         ....++.....+....|.|.++..+|
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~-~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTST-DIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCC-CCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            445667788899999999998866 55667899863  211   1         12235555555567789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.6e-09  Score=51.80  Aligned_cols=88  Identities=17%  Similarity=0.320  Sum_probs=56.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCC----CeEEEeeCCEE----------------cC---C--CCCEEEEEc---C
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCR----PQVIWYKETLK----------------LD---T--TERRIMETR---G   61 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~~~----------------l~---~--~~~~~~~~~---~   61 (106)
                      +..+...+....|+++.|.|.... .+.    ..+.|++....                ..   .  ..+..+...   .
T Consensus         7 Vt~p~~~v~~~~G~~v~L~C~~~~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           7 ITTPEEMIEKAKGETAYLPCKFTL-SPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEEC-CTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEccCceEEEECCCcEEEeEEEec-ccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            334444577889999999999865 332    35789763110                00   0  012222111   1


Q ss_pred             cEEEEEEcccCCCCCEeeEEEEEcCCCcceEEEEEEE
Q psy17205         62 RRHTLVIRKVLFTDFGNYSCVAENSMGKTRQYLELSG   98 (106)
Q Consensus        62 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~~   98 (106)
                      ...+|+|.+++..|.|.|.|.+.+..+.....+.|.+
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            2357999999999999999999988776666666654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.94  E-value=1.8e-08  Score=48.72  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEE---c---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLK---L---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~---l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|++++|.|.... .....+.||+.  +..   +         ....++.....+....|.|.+++.+|
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~-~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQ-EISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEccCCEEEECCCCCEEEEEEeCC-CCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            345667788889999999999877 66667999873  211   1         11234444445567789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      ++.|.|...+.
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1c5cl1          83 FADYYCLQYAS   93 (107)
T ss_dssp             CSEEEEEECSS
T ss_pred             CeEEEEecCcC
Confidence            99999986653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.92  E-value=3.4e-08  Score=47.76  Aligned_cols=75  Identities=20%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|++++|.|.... .....+.||+..     ..+         ....++..........|.|.++..+|
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASE-NVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADD   82 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCEEeECCCCCEEEEEEecC-CcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecC
Confidence            446677788999999999999877 666679999741     111         11235555555667789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|-...
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998654

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.91  E-value=1e-07  Score=46.54  Aligned_cols=76  Identities=20%  Similarity=0.361  Sum_probs=53.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---CC-C-----CCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---DT-T-----ERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~~-~-----~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.++|.|.... .....+.||+..     ..+   .. .     .++....  .....+|.|.++..
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~-~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~   81 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTV-SPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   81 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECC-SCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcC-CCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence            455677888999999999999877 677789999742     111   00 1     1222211  23466899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      .|+|.|.|.+...
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          82 SDSASYICVVSDR   94 (114)
T ss_dssp             GGCSEEEEEEECS
T ss_pred             hhCcccceeeecC
Confidence            9999999998764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=9.8e-08  Score=47.13  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcC---------C-------------CCCEEEE-EcCc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLD---------T-------------TERRIME-TRGR   62 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~---------~-------------~~~~~~~-~~~~   62 (106)
                      |.+...+..+.+..|++++|.|.... .....+.|++.  +..+.         .             ..++... ..+.
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~-~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLG-SVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEES-CCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcC-ccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            56667788888999999999999887 77778999862  11100         0             0122221 2234


Q ss_pred             EEEEEEcccCCCCCEeeEEEEEc
Q psy17205         63 RHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        63 ~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ...|+|.+++.+|.|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            56799999999999999998763

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.89  E-value=5.6e-08  Score=47.44  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---CC-C------CCEEE--EEcCcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---DT-T------ERRIM--ETRGRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~~-~------~~~~~--~~~~~~~~l~~~~~~   72 (106)
                      +...+..+.+..|++++|.|..........+.||+..     ..+   .. .      .+...  ........|.|.++.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            4566777888999999999986651344568898732     111   00 0      11112  122446689999999


Q ss_pred             CCCCEeeEEEEEcCC
Q psy17205         73 FTDFGNYSCVAENSM   87 (106)
Q Consensus        73 ~~~~g~y~C~~~~~~   87 (106)
                      .+|+|.|.|......
T Consensus        83 ~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          83 VVDSAVYFCALSGFY   97 (114)
T ss_dssp             GGGCEEEEEEEECSB
T ss_pred             cccCCCceEeCCCCC
Confidence            999999999876543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.89  E-value=3.5e-08  Score=47.71  Aligned_cols=76  Identities=21%  Similarity=0.303  Sum_probs=56.4

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      +++..+..+.+..|++++|.|.... .....+.||+..     ..|         ....++..........|.|.++..+
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   81 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQ-GVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPE   81 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECC-CCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeC
Confidence            4556677888999999999999876 556788898742     111         1123555555566778999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|....
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1tjgl1          82 DFATYYCQQLH   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cCceEEEEECc
Confidence            99999997654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.89  E-value=2.9e-08  Score=48.45  Aligned_cols=76  Identities=17%  Similarity=0.226  Sum_probs=53.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CCC------CCEEEE--EcCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DTT------ERRIME--TRGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~~------~~~~~~--~~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.+.|.|.... .....+.||+..  .   .+   ...      .++...  .......|.|.++..
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~-~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTD-SAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESC-CCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEec-CcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            456677788899999999999877 666678999732  1   11   000      122221  124566899999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.|.|.|.....
T Consensus        82 ~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          82 GDSATYLCAVRPT   94 (113)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCCcEEeEeEecC
Confidence            9999999998754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.88  E-value=1.9e-08  Score=48.67  Aligned_cols=75  Identities=19%  Similarity=0.200  Sum_probs=54.9

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+.+|++++|.|.... .....+.||+..     ..+         ....++..........|.|.++..+|
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~-~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASE-DIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTED   82 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCC-CcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEccccccc
Confidence            445677788899999999998876 555679998732     111         11235555545566789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|....
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998664

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.88  E-value=4.8e-08  Score=47.13  Aligned_cols=75  Identities=17%  Similarity=0.244  Sum_probs=55.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC----EEc---------C-CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET----LKL---------D-TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~----~~l---------~-~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ++..+..+.+.+|+.++|.|.... .....+.||+..    ..+         . ...++.....+....|.|.++..+|
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~-~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQ-DIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCC-CCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            455677788899999999998866 556678998731    111         0 1235555555667789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|....
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.88  E-value=9.5e-08  Score=46.15  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=55.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc--------C-CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL--------D-TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l--------~-~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ++..+..+.+.+|++++|.|.... .....+.||+..     ..+        . ...++..........|.|.+++.+|
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~-~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQ-DINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCC-CCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            445567788889999999998876 666678898642     111        1 1135555555667789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      ++.|.|.....
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1d5il1          83 MGIYYCLQYDE   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEeeeccC
Confidence            99999976543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.87  E-value=4.4e-08  Score=47.49  Aligned_cols=75  Identities=17%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+.+|+.+.|.|...+ .....+.||+..     +.+         ....++.....+....|.|..+..+|
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~-~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQ-DIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEecC-CCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            445667788999999999999877 656678898732     111         11235555555667789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|-...
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999998664

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.85  E-value=4.3e-08  Score=47.41  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=55.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      ++..+..+.+..|++++|.|.... .....+.||+..     ..+         ....++..........|.|.+++.+|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQ-NVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCC-CCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            456677788899999999998766 555678998732     111         11235555555667789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|-...
T Consensus        83 sA~YyCa~~~   92 (107)
T d1mexl1          83 LAEYFCQQYN   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             ceeEEEeECC
Confidence            9999997654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.84  E-value=2.7e-08  Score=48.69  Aligned_cols=76  Identities=17%  Similarity=0.161  Sum_probs=53.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---C------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---D------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|++++|.|.... .....+.||+..     +.+   .      ...++....  ......|.|.+++.
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~-~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQS-TYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQL   82 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEEC-SSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeC-CCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeecccccc
Confidence            445677788999999999999887 777889998742     111   0      011222221  12345699999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          83 SDSALYYCALFLA   95 (115)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             ccCccceEEEEcC
Confidence            9999999987653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.83  E-value=1.1e-07  Score=45.81  Aligned_cols=74  Identities=20%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc-------C--CCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL-------D--TTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      +..+..+.+..|++++|.|.... .....+.||+..     +.+       .  ...++..........|.|.+++.+|+
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~-~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQ-SIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            35567788899999999998876 566678998742     111       0  11355555556677899999999999


Q ss_pred             EeeEEEEEc
Q psy17205         77 GNYSCVAEN   85 (106)
Q Consensus        77 g~y~C~~~~   85 (106)
                      +.|.|-...
T Consensus        83 a~YyCa~~~   91 (106)
T d1op3k1          83 ATYHCQHYA   91 (106)
T ss_dssp             SEEEEEEEC
T ss_pred             CcEeeeeCC
Confidence            999998664

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.83  E-value=2.2e-07  Score=45.04  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEcC---C------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKLD---T------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l~---~------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+.+|+.++|.|.... .....+.||+..     ..+.   .      ..++....  ......|.|..+..
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTN-SMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCC-CCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence            455677788899999999998777 666778898742     1110   0      01222222  24567899999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|+|.|.|-...
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998774

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.82  E-value=1.1e-07  Score=45.96  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|+.+.|.|.... .....+.||+..  .   .+         ....++.....+....|.|.++..+|
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASK-SISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             EEccCCeEEecCCCCEEEEEEccC-CcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            445677788899999999999877 666679998742  1   11         01123444445567789999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      ++.|.|-....
T Consensus        83 sa~YyCA~~~~   93 (108)
T d1jhll_          83 FAMYICQQHNE   93 (108)
T ss_dssp             CSEEEEEECSS
T ss_pred             ceEEEEeeCCC
Confidence            99999976653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.82  E-value=3.2e-07  Score=44.83  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--C---EEcC------------CCCCEEEEEc--CcEEEEEEc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--T---LKLD------------TTERRIMETR--GRRHTLVIR   69 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~---~~l~------------~~~~~~~~~~--~~~~~l~~~   69 (106)
                      ++...+..+.+..|+.++|.|..........+.||+.  +   ..+.            ...++.....  .....|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            3456677788899999999998765135668899862  1   1110            1124444332  234679999


Q ss_pred             ccCCCCCEeeEEEEEcCC
Q psy17205         70 KVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~~~   87 (106)
                      +++.+|+|.|.|......
T Consensus        82 ~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             SCCGGGCEEEEEEEECTT
T ss_pred             CccccccccceeeEecCC
Confidence            999999999999877543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=1.2e-07  Score=45.95  Aligned_cols=75  Identities=23%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc-------C--CCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL-------D--TTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l-------~--~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+.+|+.++|.|.... .....+.||+..     ..+       .  ...++..........|.|.++..+|
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~-~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASE-NIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EECcCCEEEECCCCCEEEEEEeCC-CcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence            345567788889999999999876 556679998732     111       0  1134555555667789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      +|.|.|-...
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.79  E-value=8.5e-08  Score=46.44  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---CCC------CCEEEE--EcCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---DTT------ERRIME--TRGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~~~------~~~~~~--~~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+.++|.|.... .....+.||+..     ..+   ...      .+....  .......|.|.++..
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~-~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   80 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYEN-SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP   80 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECC-TTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecC-CCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCC
Confidence            345566788889999999998876 556678998742     111   000      122222  124456899999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|+|.|.|-+..
T Consensus        81 ~Dsa~YyCa~~~   92 (110)
T d1u3ha1          81 GDSATYFCAASA   92 (110)
T ss_dssp             TSCSEEEECCEE
T ss_pred             CCceeEeeeecC
Confidence            999999998753

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.79  E-value=2.4e-07  Score=45.11  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=54.1

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecC--CCCeEEEeeC--C----EEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEe
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAF--CRPQVIWYKE--T----LKLDTTERRIMET--RGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~--~----~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~   78 (106)
                      .++..+..+....|++++|.|...+ .  ....+.||+.  +    ..+....++....  ......|+|.+++.+|+|.
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~-~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   80 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRD-ASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGT   80 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEES-CSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECC-CcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcce
Confidence            4566777888999999999998875 3  3356899863  1    1222334443333  2345689999999999999


Q ss_pred             eEEEEEc
Q psy17205         79 YSCVAEN   85 (106)
Q Consensus        79 y~C~~~~   85 (106)
                      |.|.+..
T Consensus        81 YyCa~~~   87 (113)
T d1vesa_          81 YKCQAFY   87 (113)
T ss_dssp             EEEEEEE
T ss_pred             Eeeeeec
Confidence            9999754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.2e-07  Score=45.63  Aligned_cols=70  Identities=20%  Similarity=0.213  Sum_probs=52.0

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      ..+.+..|++++|.|.... .....+.||+..     ..+         ....++..........|.|.++..+|++.|.
T Consensus         8 ~s~~~~~G~svtL~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASE-SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             SEEEECTTSCEEEEEEESS-CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            3678889999999999876 666779998642     111         1123555555566778999999999999999


Q ss_pred             EEEEc
Q psy17205         81 CVAEN   85 (106)
Q Consensus        81 C~~~~   85 (106)
                      |....
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            96543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.78  E-value=3.4e-07  Score=44.51  Aligned_cols=77  Identities=19%  Similarity=0.367  Sum_probs=53.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeec-CCCCeEEEeeCC------EEcCCCCCEEEEEc--CcEEEEEEcccCCCCCEeeE
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFA-FCRPQVIWYKET------LKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~-~p~p~~~w~~~~------~~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~   80 (106)
                      +...+..+....|+.++|.|...+. .....+.||+..      ..+....++.....  .....|+|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            4456777888899999999987541 234679999731      22323334433322  34568999999999999999


Q ss_pred             EEEEcC
Q psy17205         81 CVAENS   86 (106)
Q Consensus        81 C~~~~~   86 (106)
                      |-+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            987643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.5e-08  Score=47.83  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC----E--E--c----------C--CCCCEEEEEcCcEEEEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET----L--K--L----------D--TTERRIMETRGRRHTLVI   68 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~----~--~--l----------~--~~~~~~~~~~~~~~~l~~   68 (106)
                      ++...+..+.+.+|++++|.|..........+.|++..    .  .  +          .  ...++..........|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            34556677788899999999987651234568898732    0  0  0          0  113455555556678999


Q ss_pred             cccCCCCCEeeEEEEEc
Q psy17205         69 RKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~   85 (106)
                      .+++.+|.|.|.|-+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=5.1e-07  Score=43.97  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=53.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CE---Ec----------CCCCCEEEEEc--CcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TL---KL----------DTTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~---~l----------~~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      +...+..+.+..|+++.|.|..........+.||+.  +.   .+          ....++.....  .....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            345677788999999999998865133457889873  11   11          11234544442  345679999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      ..|+|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999987653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.74  E-value=6.7e-08  Score=47.23  Aligned_cols=76  Identities=16%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---CCC-------CCEEEEE--cCcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---DTT-------ERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~~~-------~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      +...+..+.+..|+.+.|.|.... .....+.||+..     ..|   ...       .++....  ......|.|.++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~-~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSS-SVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAH   81 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCC
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCC-CCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccc
Confidence            455677788999999999999877 667789999731     111   110       1111111  1223469999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|+|.|.|-+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          82 MSDAAEYFCAVSES   95 (115)
T ss_dssp             GGGCEEEEEEEESS
T ss_pred             ccCCccceeeecCC
Confidence            99999999998753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.73  E-value=5.3e-07  Score=43.63  Aligned_cols=75  Identities=12%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---E-c--C---------CCCCE-EEEEcCcEEEEEEcc
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---K-L--D---------TTERR-IMETRGRRHTLVIRK   70 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~-l--~---------~~~~~-~~~~~~~~~~l~~~~   70 (106)
                      .+...+..+.+..|++++|.|....  ....+.||+..  .   . +  .         ...++ ..........|.|.+
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~--~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN--NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS--CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC--CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence            3456677788899999999998755  35679998731  1   0 1  0         01122 222234567899999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +..+|+|.|.|-...
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          81 ATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhhCEEEEEeeCC
Confidence            999999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.70  E-value=2.2e-07  Score=44.88  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-CCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-CRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFT   74 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~   74 (106)
                      ++..+..+.+..|+.+.|.|.... . ....+.||+..     ..+         ....++..........|.|.++..+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~   82 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQ-SVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPE   82 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESS-CCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeec-CCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheec
Confidence            345677788899999999998754 3 34568898742     111         1123455555556778999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |+|.|.|....
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.70  E-value=3e-08  Score=47.95  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c---------CCCCCEEEEEcCcEEEEEEcccCCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L---------DTTERRIMETRGRRHTLVIRKVLFTD   75 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l---------~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (106)
                      +...+..+.+..|++++|.|.... .....+.||+..  ..   |         ....++..........|.|.++..+|
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQ-DINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESS-CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCC-CcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            345566677889999999998766 666678998642  11   1         11123333444567789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|-...
T Consensus        83 sa~YyCa~~~   92 (107)
T d3cx5k1          83 IATYFCQHHI   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEeeeCC
Confidence            9999997653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.70  E-value=9e-07  Score=42.99  Aligned_cols=76  Identities=26%  Similarity=0.381  Sum_probs=50.3

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CCC----CCEEEE---EcCcEEEEEEcccCCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DTT----ERRIME---TRGRRHTLVIRKVLFT   74 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~~----~~~~~~---~~~~~~~l~~~~~~~~   74 (106)
                      +...+..+.+..|+.+.|.|....  ....+.||+..  .   .+   ...    ......   .......|.|.++..+
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT--TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS--CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec--CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            455677788899999999998765  34578998732  1   01   000    000000   0123457999999999


Q ss_pred             CCEeeEEEEEcCC
Q psy17205         75 DFGNYSCVAENSM   87 (106)
Q Consensus        75 ~~g~y~C~~~~~~   87 (106)
                      |+|.|.|.+....
T Consensus        82 Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          82 DSGTYFCAAEASS   94 (113)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             HCEEEEEEecCCC
Confidence            9999999877543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.69  E-value=1.4e-07  Score=45.22  Aligned_cols=69  Identities=20%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c---------CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEE
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L---------DTTERRIMETRGRRHTLVIRKVLFTDFGNYSC   81 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C   81 (106)
                      .+.+..|+.++|.|.... .....+.||+..  ..   +         ....++..........|.|.+++.+|++.|.|
T Consensus         7 sl~~~~G~svtl~C~~~~-~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   85 (103)
T d8faba1           7 SVSVSPGQTARITCSANA-LPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYC   85 (103)
T ss_dssp             EEEECTTSCEEEEEECTT-GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCC-CCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEe
Confidence            677889999999998766 555678898642  11   1         01134445555667789999999999999999


Q ss_pred             EEEc
Q psy17205         82 VAEN   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      ....
T Consensus        86 A~~~   89 (103)
T d8faba1          86 QAWD   89 (103)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            7664

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.5e-08  Score=46.72  Aligned_cols=76  Identities=11%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      |.+...+..+ +..|++++|.|....  ....+.|++++......... .........|.|.++...|.|.|.|...+..
T Consensus         5 PsLsa~P~~~-V~~G~~VTL~C~~~~--~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           5 PFIWAEPHFM-VPKEKQVTICCQGNY--GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CEEEEESCSE-EETTCCEEEEEECCT--TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEeeCCCc-ccCCCcEEEEEecCC--CccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            4455445444 569999999998754  56678888887532210000 0001334579999999999999999987653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.67  E-value=6.2e-07  Score=43.47  Aligned_cols=76  Identities=18%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC----CCCeEEEeeCC--E---Ec---------CCCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF----CRPQVIWYKET--L---KL---------DTTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~----p~p~~~w~~~~--~---~l---------~~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      ++..+..+.+..|++++|.|.... .    ....+.||+..  .   .+         ....++..........|.|.++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~-~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~   82 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASK-SVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPV   82 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESS-CCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECC-CCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccc
Confidence            345567788899999999998753 2    12348898742  1   11         0123555555566778999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      ..+|.+.|.|.....
T Consensus        83 ~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          83 EEEDAATYYCSHIRE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             cccCCceEEEEECCC
Confidence            999999999976543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=2e-07  Score=45.78  Aligned_cols=74  Identities=22%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      ...+..+.+..|++++|.|.... .....+.||+..     ..+         ....++..........|.|.++...|.
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~-~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQ-NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV   83 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSS-CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EccCCEEEECCCCCEEEEEEeCC-CCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC
Confidence            34556777889999999998766 555678998742     111         112344444445567899999999999


Q ss_pred             EeeEEEEEc
Q psy17205         77 GNYSCVAEN   85 (106)
Q Consensus        77 g~y~C~~~~   85 (106)
                      +.|.|....
T Consensus        84 avYyCa~~~   92 (119)
T d1f3rb2          84 ATYFCYQYN   92 (119)
T ss_dssp             SEEEEEEES
T ss_pred             eEEEeeccC
Confidence            999998764

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.8e-07  Score=44.41  Aligned_cols=88  Identities=11%  Similarity=0.162  Sum_probs=55.0

Q ss_pred             cCCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCCE-----Ec---------CCCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         13 TERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKETL-----KL---------DTTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        13 ~~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~~-----~l---------~~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      .+..+...+|+++.|.|.... ..   ...+.|++...     .+         ....+..+..  ......|+|.++..
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~-~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPP-TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCC-CHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CCCEEEEcCCCCEEEEEEECC-CCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            455688889999999998654 22   23577876421     11         0112333322  23456899999999


Q ss_pred             CCCEeeEEEEEcCCCcceEEEEEEEeCC
Q psy17205         74 TDFGNYSCVAENSMGKTRQYLELSGKYP  101 (106)
Q Consensus        74 ~~~g~y~C~~~~~~~~~~~~~~l~~~~~  101 (106)
                      .|.|.|.|.+..........+.|.+...
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            9999999988654333334456665443

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.64  E-value=1.9e-07  Score=45.53  Aligned_cols=77  Identities=17%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE----c--C--C-C----CCEEEEE--cCcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK----L--D--T-T----ERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~----l--~--~-~----~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      +...+..+.+.+|++++|.|..........+.||+..  ..    +  .  . .    .++....  ......|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            4556777889999999999987541344568898732  10    1  0  0 0    2333332  2345689999999


Q ss_pred             CCCCEeeEEEEEcC
Q psy17205         73 FTDFGNYSCVAENS   86 (106)
Q Consensus        73 ~~~~g~y~C~~~~~   86 (106)
                      .+|+|.|.|.....
T Consensus        82 ~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          82 IEDSAVYFCAMRGD   95 (115)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccccccccceeecC
Confidence            99999999987643

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.8e-08  Score=47.36  Aligned_cols=78  Identities=8%  Similarity=-0.119  Sum_probs=49.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCE-EEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERR-IMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+.. .+..|++++|.|....  +...+.|++++......... ..........+.|.++...|.|.|.|...+.
T Consensus         8 PsLsa~P~~-~V~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           8 PFISAKSSP-VIPLDGSVKIQCQAIR--EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCEEESSCS-EEETTCCEEEEECCCT--TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEecCCC-ceeCCCeEEEEEcCCC--CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            455555544 4668999999997654  55678888765311110000 0111122346899999999999999998876


Q ss_pred             CC
Q psy17205         87 MG   88 (106)
Q Consensus        87 ~~   88 (106)
                      ..
T Consensus        85 ~~   86 (99)
T d1ucta1          85 HY   86 (99)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.63  E-value=1e-07  Score=46.59  Aligned_cols=75  Identities=16%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--C---EEcC---CCC-------CEEE--EEcCcEEEEEEcccC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--T---LKLD---TTE-------RRIM--ETRGRRHTLVIRKVL   72 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~---~~l~---~~~-------~~~~--~~~~~~~~l~~~~~~   72 (106)
                      +...+..+.+..|++++|.|.... .....+.||+.  +   ..+.   ...       +...  ........|.|.++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~-~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSY-SATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH   81 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEEC-SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcC-CCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence            445666788999999999999877 66778889873  1   1110   000       0011  111234579999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|+|.|.|....
T Consensus        82 ~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          82 WSDSAVYFCAVSG   94 (115)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccccceecccccC
Confidence            9999999998653

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=1.8e-08  Score=48.76  Aligned_cols=65  Identities=15%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcC---------C----------CCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLD---------T----------TERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~---------~----------~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..|+++.|.|.... .....+.|++......         .          ..|..+..   +.+|.|.++...|.|.|
T Consensus        11 v~~G~~V~L~c~~~p-~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~---ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          11 VAEDNNVLLLVHNLP-LALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS---NGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             CCTTCCEEEEEESCC-TTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT---TSCEEECSCCGGGCEEE
T ss_pred             ccCCCCEEEEecCCC-CCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc---cccEEEcCCCchhCEEE
Confidence            458999999997544 4566889988542211         0          11333322   23799999999999999


Q ss_pred             EEEEEcCC
Q psy17205         80 SCVAENSM   87 (106)
Q Consensus        80 ~C~~~~~~   87 (106)
                      .|.+.+..
T Consensus        87 ~c~v~~~~   94 (107)
T d1l6za1          87 TLDMTDEN   94 (107)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99997654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.9e-07  Score=43.54  Aligned_cols=73  Identities=12%  Similarity=-0.004  Sum_probs=50.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+.. .+..|.+++|.|.... ...-.+.|++++......  . . .......+.+..+...|.|+|.|.....
T Consensus         6 P~Lsa~P~~-~V~~G~~VTL~C~~~~-~~~~~f~L~k~g~~~~~~--~-~-~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           6 PFLSADRGL-VLMPGENISLTCSSAH-IPFDRFSLAKEGELSLPQ--H-Q-SGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CEEEESSCS-EECTTCCCEEEEECSS-SCCSEEEEEETTCSSCCS--E-E-ECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CEEEEeCCC-ccCCCCeEEEEEeCCC-CCceEEEEEECCcccceE--E-c-CCCcccEEEEeccccccCcEEEEEEEcC
Confidence            455555543 5679999999998643 344578899988533222  1 1 1233467999999999999999987653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.63  E-value=6.3e-07  Score=43.89  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec-----------C---CCCCEEEEE-cCcEEEEEEc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL-----------D---TTERRIMET-RGRRHTLVIR   69 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l-----------~---~~~~~~~~~-~~~~~~l~~~   69 (106)
                      +...+..+.+..|+.+.|.|...+ .....+.||+..  .   .+           .   ...++.... ......|.|.
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLD-TNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECS-SCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcC-CcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            455667788889999999999877 666789998742  1   11           0   112343333 2345679999


Q ss_pred             ccCCCCCEeeEEEEEc
Q psy17205         70 KVLFTDFGNYSCVAEN   85 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~   85 (106)
                      ++...|.+.|.|....
T Consensus        83 ~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALA   98 (118)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccccccCceEEEEEec
Confidence            9999999999998764

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.62  E-value=1e-06  Score=42.91  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=50.2

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CCC------CCEEEEE--cCcEEEEEEcccCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DTT------ERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~~------~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      ...+..+.+..|+.++|.|...+ . ...+.||+..  .   .+   ...      .++....  ......|.|.++..+
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~-~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSS-V-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSS-C-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-C-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            45566788899999999998765 3 4578998732  1   00   111      1222221  234668999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |+|.|.|-....
T Consensus        82 Dsa~YyCa~~~~   93 (115)
T d1ogad1          82 DTGLYLCAGAGS   93 (115)
T ss_dssp             GCEEEEEEEECT
T ss_pred             ceeeEcccccCC
Confidence            999999987643

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.61  E-value=5.8e-07  Score=43.56  Aligned_cols=76  Identities=21%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC----CCCeEEEeeC--CE---Ec---------CCCCCEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF----CRPQVIWYKE--TL---KL---------DTTERRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~----p~p~~~w~~~--~~---~l---------~~~~~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.++|.|.... .    ....+.||+.  +.   .+         ....++..........|.|.++
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~-s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   82 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGE-SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESS-CCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEecc-CCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc
Confidence            345567788889999999998643 2    2234889874  21   11         0112444444456778999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      ..+|.+.|.|.....
T Consensus        83 ~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          83 EADDVATYYCQQTNE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCccEEEeecCC
Confidence            999999999987653

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.61  E-value=1.1e-06  Score=42.66  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC---CCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC---RPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p---~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      +..+.+..|++++|.|...+ ..   ...+.||+..     ..+         ....++..........|.|..++.+|+
T Consensus         7 P~s~~~~~G~svtl~C~~~~-~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVS-SIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCC-CSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCcEEECCCCCEEEEEEeCC-CCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            45788889999999998765 32   2358899732     111         112344455555678899999999999


Q ss_pred             EeeEEEEEcC
Q psy17205         77 GNYSCVAENS   86 (106)
Q Consensus        77 g~y~C~~~~~   86 (106)
                      +.|.|.....
T Consensus        86 a~YyCa~~~~   95 (112)
T d1lgva1          86 ADYYCSSYDG   95 (112)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEeeecC
Confidence            9999987653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.60  E-value=9e-07  Score=42.86  Aligned_cols=71  Identities=20%  Similarity=0.205  Sum_probs=51.1

Q ss_pred             CeEEeecCCeEEEEEEEeecC--CCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         15 RRIIETRGRRHTLIFFFHFAF--CRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      ..+.+.+|+.++|.|...+ .  ....+.||+..     ..+         ....++..........|.|.+++.+|++.
T Consensus         8 ~s~~v~~G~svtl~C~~s~-~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSS-SNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             SEEEECTTSCEEEEEECCC-CCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cceEeCCCCCEEEEEEECC-cCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4688889999999998765 3  24568998641     111         11235555555667889999999999999


Q ss_pred             eEEEEEcC
Q psy17205         79 YSCVAENS   86 (106)
Q Consensus        79 y~C~~~~~   86 (106)
                      |.|.....
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987643

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.60  E-value=6.7e-07  Score=43.48  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~   70 (106)
                      +...+..+.+..|+.++|.|...+ ..     ...+.||+..     ..+         ....++.....+....|+|.+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~-~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~   83 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQ-TIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   83 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESS
T ss_pred             EeCcCCEEEECCCCCEEEEEEecc-ccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCC
Confidence            445567788899999999999754 22     2468898642     111         112355555556677899999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +..+|.+.|.|...+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999997654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.60  E-value=7.7e-07  Score=42.61  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc-------C--CCCCEEEEEcCcEEEEEEcccCCCCC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL-------D--TTERRIMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l-------~--~~~~~~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      +..+..+.+..|+.+.|.|....  ....+.||+..     ..+       .  ...++..........|.|.++..+|+
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~--~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS--SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS--CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC--CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            45567788899999999998654  34457898742     111       0  11244444445677899999999999


Q ss_pred             EeeEEEEEc
Q psy17205         77 GNYSCVAEN   85 (106)
Q Consensus        77 g~y~C~~~~   85 (106)
                      +.|.|-...
T Consensus        82 a~YyCa~~~   90 (104)
T d1yqvl1          82 ATYYCQQWG   90 (104)
T ss_dssp             EEEEEEECS
T ss_pred             CeEEEEecC
Confidence            999997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.5e-06  Score=42.06  Aligned_cols=70  Identities=20%  Similarity=0.168  Sum_probs=49.5

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeC--C-E--Ec---------CCCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKE--T-L--KL---------DTTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~-~--~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      .+.+..|++++|.|....+..  .-.+.||+.  + .  .+         ....++..........|.|.++..+|.|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            677889999999998864122  123789862  1 1  11         112456655566778899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|....
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.59  E-value=3.9e-07  Score=44.10  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=47.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+.+|+++.|.|..........+.||+..  .   .+.         ...++..........|.|.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            346788899999999986541234568898732  1   110         00111222224566799999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|.+..
T Consensus        85 yCa~~~   90 (110)
T d2esvd1          85 YCIVVR   90 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.59  E-value=1.3e-06  Score=42.35  Aligned_cols=75  Identities=21%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCC-----CCeEEEeeCC--E---Ec-------C--CCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFC-----RPQVIWYKET--L---KL-------D--TTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p-----~p~~~w~~~~--~---~l-------~--~~~~~~~~~~~~~~~l~~~~   70 (106)
                      ++..+..+.+..|+.++|.|.... ..     ...+.||+..  .   .|       .  ...++.....+....|.|.+
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~-~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~   82 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQ-RLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISR   82 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EeCcCCEEEECCCCCEEEEEEECc-ccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECc
Confidence            345566788899999999998654 22     2458898641  1   11       1  12355544555677899999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      ++.+|.+.|.|...+
T Consensus        83 ~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          83 VEAEDLGVYYCWQGT   97 (112)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccCcCEeEEEEcCC
Confidence            999999999996544

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.58  E-value=5.9e-07  Score=43.75  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=49.4

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc------C-----------CCCCEEEEE--cCcEEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL------D-----------TTERRIMET--RGRRHTLV   67 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l------~-----------~~~~~~~~~--~~~~~~l~   67 (106)
                      ..+..+.+..|+.+.|.|...+......+.||+..     ..+      .           ...++....  ......|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            45667888999999999998761244578998641     111      0           011222222  12345799


Q ss_pred             EcccCCCCCEeeEEEEEc
Q psy17205         68 IRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        68 ~~~~~~~~~g~y~C~~~~   85 (106)
                      |.++..+|+|.|.|....
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.57  E-value=1.3e-06  Score=42.38  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC-----CCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF-----CRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRK   70 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~-----p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~   70 (106)
                      ++..+..+.+.+|++++|.|...+ .     ....+.||+..     ..+         ....++..........|.|.+
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~-~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~   82 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSK-SLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISR   82 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESS-CCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESS
T ss_pred             eEecCCEEEECCCCCEEEEEEECC-CCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECC
Confidence            345566788889999999998755 3     23468887632     111         111345555556677899999


Q ss_pred             cCCCCCEeeEEEEEc
Q psy17205         71 VLFTDFGNYSCVAEN   85 (106)
Q Consensus        71 ~~~~~~g~y~C~~~~   85 (106)
                      +..+|.+.|.|....
T Consensus        83 ~~~~DsAvYyCa~~~   97 (112)
T d1mjul1          83 VEAEDVGVYYCLQHL   97 (112)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             ccccCCceEEEEeCC
Confidence            999999999996543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6e-08  Score=45.95  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCE--EcCCC------------CCEEEEE---cCcEEEEEEcccCCCCCEee
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETL--KLDTT------------ERRIMET---RGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~--~l~~~------------~~~~~~~---~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +....|+++.|.|.... .....+.|++...  .+...            .++....   .....+|.|.+++.+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQ-KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSS-SSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEec-CCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            55678999999998877 6777899987532  11110            1111110   11244699999999999999


Q ss_pred             EEEEEcC
Q psy17205         80 SCVAENS   86 (106)
Q Consensus        80 ~C~~~~~   86 (106)
                      .|.+.+.
T Consensus        83 ~C~v~~~   89 (97)
T d2nxyb1          83 ICEVEDQ   89 (97)
T ss_dssp             EEEETTE
T ss_pred             EEEEecC
Confidence            9998653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=4.3e-07  Score=44.31  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             ccCCeEEeecCCeEEEEEEEeec---CCCCeEEEeeCC------EEc---------C-C----CCCEEEEE--cCcEEEE
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFA---FCRPQVIWYKET------LKL---------D-T----TERRIMET--RGRRHTL   66 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~---~p~p~~~w~~~~------~~l---------~-~----~~~~~~~~--~~~~~~l   66 (106)
                      ..+..+.+..|++++|.|.....   .....+.|++..      ..+         . .    ..|+.+..  .....+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34566788899999999987540   123478897521      001         0 0    11232221  1234579


Q ss_pred             EEcccCCCCCEeeEEEEEcCC
Q psy17205         67 VIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .|.++...|.|.|.|.+.+..
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC--
T ss_pred             EECCCChHHCEEEEEEEEECC
Confidence            999999999999999998754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.55  E-value=1.1e-06  Score=42.67  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecC------CCCeEEEeeCC--E---Ec---------CCCCCEEEEEcCcEEEEEEc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAF------CRPQVIWYKET--L---KL---------DTTERRIMETRGRRHTLVIR   69 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~------p~p~~~w~~~~--~---~l---------~~~~~~~~~~~~~~~~l~~~   69 (106)
                      ++..+..+.+.+|+.+.|.|...+ .      ....+.||+..  .   .+         ....++..........|.|.
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~-~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~   82 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQ-SLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT   82 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESS-CCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEECC-CcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence            445677788899999999998653 2      12348898742  1   10         11234444455566789999


Q ss_pred             ccCCCCCEeeEEEEEc
Q psy17205         70 KVLFTDFGNYSCVAEN   85 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~   85 (106)
                      ++...|+|.|.|-...
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999998653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.55  E-value=2.9e-06  Score=40.92  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC---C------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD---T------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~---~------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      +...+..+.+..|+++.|.|.... .....+.||+..  .   .+.   .      ..++....  ......|.|.++..
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~-~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSA-SGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEEC-SSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecC-CCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            455677788999999999998776 556679998732  1   110   0      01222221  12345789999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|++.|.|-...
T Consensus        82 ~Dsa~YyCA~~~   93 (110)
T d1ac6a_          82 SDSAVYYCALSG   93 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCcccceeecC
Confidence            999999998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-06  Score=40.50  Aligned_cols=66  Identities=12%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             cCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEc--CcEE---EEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         21 RGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETR--GRRH---TLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~--~~~~---~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .++.+.|.|.+.+..|.+.+.|.+++..+...........  +...   .|.+.   ..+...|.|.+....-.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            5777899999998568899999999877654422222211  2122   34443   34567899999876433

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.52  E-value=2.3e-06  Score=41.63  Aligned_cols=69  Identities=26%  Similarity=0.316  Sum_probs=50.4

Q ss_pred             eEEeecCCeEEEEEEEeecC--CCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         16 RIIETRGRRHTLIFFFHFAF--CRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      .+.+..|++++|.|...+ .  ....+.||+..     ..+         ....++..........|.|.++..+|++.|
T Consensus         9 s~~v~~G~svtL~C~~s~-~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSA-TDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             EEEECTTCCEEEEEECCT-TTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cEEeCCCCCEEEEEEECC-ccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            577889999999999865 3  24678998742     111         111355555556677899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|-...
T Consensus        88 yCA~~~   93 (114)
T d2rhea_          88 YCAAWN   93 (114)
T ss_dssp             EEEEEE
T ss_pred             EEeecC
Confidence            998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.52  E-value=2.1e-06  Score=41.59  Aligned_cols=72  Identities=24%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeC--CEE---c------------CCCCCEEEEE-cCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLK---L------------DTTERRIMET-RGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~---l------------~~~~~~~~~~-~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+.++|.|....  ....+.||+.  +..   +            ....++.... ......|.|.++..
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~--~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPIS--GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECST--TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             eCCCeEEECCCCCEEEEEEECC--CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            4566788889999999998654  3467899872  211   1            0112222222 23356799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|++.|.|-...
T Consensus        82 ~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 GDSALYLCASSL   93 (113)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceeeeeeeeC
Confidence            999999998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.51  E-value=1.3e-06  Score=41.06  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=44.2

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCC-----EEc---C-----CCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKET-----LKL---D-----TTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~-----~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |++++|.|.... .....+.||+..     +.|   .     ...++....  ......|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~-~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSD-RGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECC-TTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEcc-ccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            688999999887 777889998732     111   1     012333222  234568999999999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.49  E-value=1.2e-06  Score=42.29  Aligned_cols=71  Identities=21%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             CeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---------CCCCCEEEEEcCcEEEEEEcccCCCCCEeeE
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---------DTTERRIMETRGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      ..+.+.+|++++|.|.... .....+.||+..     ..+         ....++..........|.|.+++.+|++.|.
T Consensus         8 ~sl~~~~G~svtl~C~~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNN-IGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             SEEEECTTSCEEEEEECTT-GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CeEEECCCCCEEEEEEcCC-CCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            3678889999999998655 445578898642     111         0123444555566778999999999999999


Q ss_pred             EEEEcC
Q psy17205         81 CVAENS   86 (106)
Q Consensus        81 C~~~~~   86 (106)
                      |-....
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            987643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8e-07  Score=41.75  Aligned_cols=70  Identities=13%  Similarity=0.107  Sum_probs=47.9

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      |.+...+.. .+..|.+++|.|....  ....+.++|++..-..    ..........+.|..+...|.|+|.|...
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~~--~~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           5 PTLSVHPGP-EVISGEKVTFYCRLDT--ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CEEEEESCS-EEETTCEEEEEEECSS--SCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CEEEEeCCC-cccCCCcEEEEECCCC--CCCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEeE
Confidence            355554543 4668999999998754  5567888887642111    11122346679999999999999999754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.46  E-value=1.7e-06  Score=41.02  Aligned_cols=74  Identities=12%  Similarity=-0.054  Sum_probs=47.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+...+.. .+..|.+++|.|....  ....+.++|++...... ............+.+..+...|.|+|.|....
T Consensus         7 PsLsa~P~~-~V~~G~~VTL~C~~~~--~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2           7 PSLSAQPGP-TVLAGENVTLSCSSRS--SYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CEEEEESCS-EECTTCEEEEEEEESS--CCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CEEEEeCCC-cccCCCeEEEEECCCC--CccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            455554543 4678999999997654  56678888887432221 11112223344567777777899999998664

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=1.5e-06  Score=42.03  Aligned_cols=73  Identities=21%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc----------CC---CCCEEEEEc-CcEEEEEEccc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL----------DT---TERRIMETR-GRRHTLVIRKV   71 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l----------~~---~~~~~~~~~-~~~~~l~~~~~   71 (106)
                      ...+..+.+..|++++|.|....  ....+.||+..     ..+          ..   ..++..... .....|+|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS--GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT--TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             EECCCEEEECCCCCEEEEEEECC--CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            34566788889999999998544  35678898641     111          00   123322221 23457999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|++.|.|-...
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999997653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.3e-07  Score=42.88  Aligned_cols=71  Identities=20%  Similarity=0.267  Sum_probs=47.2

Q ss_pred             eEEeecCCeEEEEEEEeecCCC----CeEEEeeCCEEcC---C---------CCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCR----PQVIWYKETLKLD---T---------TERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~~~l~---~---------~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      .+....|+.+.|.|.... ...    -.+.|.+++..+.   .         ..+..... .+..+|.|.+++.+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~-~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNV-SVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCC-CTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEE
T ss_pred             EEEEEeCCCEEEEEEECC-cccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEE
Confidence            356789999999997654 221    3577877764431   0         01222222 2345899999999999999


Q ss_pred             EEEEEcCCC
Q psy17205         80 SCVAENSMG   88 (106)
Q Consensus        80 ~C~~~~~~~   88 (106)
                      .|.+.+..+
T Consensus        81 ~C~V~~~~~   89 (105)
T d1dr9a1          81 ECVVLKYEK   89 (105)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999886533

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.1e-06  Score=40.03  Aligned_cols=76  Identities=17%  Similarity=0.052  Sum_probs=45.9

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+...+.. .+..|.+++|.|....  ....+.+++++........  ......+....+.|..+...|.|+|.|....
T Consensus         5 PsLsa~P~~-~v~~G~~VTL~C~~~~--~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           5 PTLSAQPSP-VVNSGGNVTLQCDSQV--AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECSS--CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CEEEeeCCC-ccCCCCcEEEEeCCCC--CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            345544543 4679999999998654  4556677777653322110  0011123356799999999999999998765


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=3.6e-06  Score=40.77  Aligned_cols=74  Identities=15%  Similarity=0.354  Sum_probs=49.1

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---C---------CCCCEEEEE-cCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---D---------TTERRIMET-RGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~---------~~~~~~~~~-~~~~~~l~~~~~   71 (106)
                      +...+..+....|+++.|.|....  ....+.||+..  .   .+   .         ...+..... ......|.|.++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~--~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   80 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM--DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA   80 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS--CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC--CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC
Confidence            445677788889999999998644  45678898731  1   01   0         011222211 223457999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|+|.|.|-+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          81 STNQTSMYLCASSS   94 (113)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccCCcccEEeeEcc
Confidence            99999999998764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.1e-06  Score=42.61  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec-------------CCCCCEEEEE-cCcEEEEEEccc
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL-------------DTTERRIMET-RGRRHTLVIRKV   71 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l-------------~~~~~~~~~~-~~~~~~l~~~~~   71 (106)
                      ...+..+.+..|+.++|.|....  ....+.||+..  .   .+             ....++.... ......|.|.++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~--~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS--GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT--TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             EECCCeEEECCCCCEEEEEEECC--CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            34566788889999999998644  45678898731  1   10             0112232222 223467999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|++.|.|....
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=41.70  Aligned_cols=71  Identities=11%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC-CCeEEEeeCC-----EEc----CC---C--CCEEEEEcCcEEEEEEcccCCCCCEe
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC-RPQVIWYKET-----LKL----DT---T--ERRIMETRGRRHTLVIRKVLFTDFGN   78 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p-~p~~~w~~~~-----~~l----~~---~--~~~~~~~~~~~~~l~~~~~~~~~~g~   78 (106)
                      +..+.+.+|+.++|.|...+ .. ...+.||+..     ..|    ..   .  .++..........|.|.++..+|+|.
T Consensus         5 P~~~~~~~G~svtl~C~~s~-~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHST-ISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESC-CCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEEeC-CCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            45678889999999998765 33 3458999742     111    00   0  11122222445679999999999999


Q ss_pred             eEEEEEc
Q psy17205         79 YSCVAEN   85 (106)
Q Consensus        79 y~C~~~~   85 (106)
                      |.|....
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9998653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.36  E-value=1.9e-06  Score=41.50  Aligned_cols=71  Identities=20%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---EcC---------CCCCEEEEEcCcEEEEEEcccCCCCCEee
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KLD---------TTERRIMETRGRRHTLVIRKVLFTDFGNY   79 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l~---------~~~~~~~~~~~~~~~l~~~~~~~~~~g~y   79 (106)
                      +..+.+..|++++|.|.... .....+.||+..  .   .+.         ...++..........|.|.+++.+|++.|
T Consensus         6 P~s~~~~~G~svtl~C~~~~-~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQ-LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETT-GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCeeEECCCCCEEEEEECCC-CCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            34677889999999997755 445568898631  1   110         11355555556677899999999999999


Q ss_pred             EEEEEc
Q psy17205         80 SCVAEN   85 (106)
Q Consensus        80 ~C~~~~   85 (106)
                      .|-...
T Consensus        85 yCA~~~   90 (108)
T d1nfde1          85 YCLSSY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            998653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=1.4e-05  Score=38.86  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCC---eEEEeeCC--EE---c----C--------CCCCEEEEEcCcEEEEEEcccCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRP---QVIWYKET--LK---L----D--------TTERRIMETRGRRHTLVIRKVLF   73 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~--~~---l----~--------~~~~~~~~~~~~~~~l~~~~~~~   73 (106)
                      +..+.+..|+.+.|.|.... ....   .+.|++..  ..   +    .        ...............|.|.++..
T Consensus         6 P~~~~~~~g~~v~L~C~~~~-~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSP-SHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRA   84 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEES-CCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCG
T ss_pred             CCEEEEcCCCcEEEEEECcc-CCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcc
Confidence            45677888999999999765 3322   47798732  11   1    0        00111223334567899999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.|.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (117)
T d1dqta_          85 VDTGLYLCKVEL   96 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEeEEEEEec
Confidence            999999998763

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.32  E-value=2.4e-06  Score=40.32  Aligned_cols=76  Identities=12%  Similarity=0.045  Sum_probs=47.4

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEE-cCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMET-RGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      |.+...+. ..+..|.+++|.|....  ....+.+++++..-.......... ......|.|..+...|.|+|.|.....
T Consensus         3 PsLsa~P~-~~V~~G~~VTl~C~~~~--~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           3 PSLLAHPG-PLVKSEETVILQCWSDV--MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESS--CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEeeCC-CccCCCCcEEEEECCCC--CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            34444443 34669999999998755  455677777653211100000111 123457999999999999999987644

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.32  E-value=1.6e-05  Score=38.90  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=51.1

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeC--C---EEc-------C--CCCCEEEEE--cCcEEEEEEcccC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKE--T---LKL-------D--TTERRIMET--RGRRHTLVIRKVL   72 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~---~~l-------~--~~~~~~~~~--~~~~~~l~~~~~~   72 (106)
                      ...+..+.+..|++++|.|...+ ..  ...+.||+.  +   ..+       .  ...++....  ......|.|..+.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~-~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKG-EAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECS-SCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             eccCCCEEECCCCCEEEEEEEec-cCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34556778889999999999876 43  356899873  1   111       0  113444333  2346789999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|.|.|.|-...
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998664

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.5e-05  Score=38.23  Aligned_cols=71  Identities=10%  Similarity=0.013  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE-EEEEcC---cEEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR-IMETRG---RRHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~-~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      +..|+.+++.|.+.++.|.+  .+.|++++..+...... .....+   ....+.+......+...|.|.+.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            56899999999998745644  68899988765321000 000000   1124555544444455899999976533

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.29  E-value=8.4e-06  Score=39.92  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc---CC----------CCCEEEEE--cCcEEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL---DT----------TERRIMET--RGRRHTL   66 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l---~~----------~~~~~~~~--~~~~~~l   66 (106)
                      ++..++..+....|+.+.|.|...+ ..  ...+.||+..     +.+   ..          ..++....  ......|
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~-~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L   81 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFI-ESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSIL   81 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECC-GGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEec-ccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccc
Confidence            3455666788889999999998765 32  3468898732     111   00          11233332  2345679


Q ss_pred             EEcccCCCCCEeeEEEEEc
Q psy17205         67 VIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        67 ~~~~~~~~~~g~y~C~~~~   85 (106)
                      .|.++..+|++.|.|-...
T Consensus        82 ~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          82 TIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EECSCCGGGCSEEEEEECC
T ss_pred             cccccccccceeEEEEEcC
Confidence            9999999999999997654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.29  E-value=3.7e-06  Score=40.59  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EEc------------CCCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LKL------------DTTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~l------------~~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      +..+.+..|++++|.|...+ ..  .-.+.|++..  ..+            ....++....  ......|.|.++..+|
T Consensus         7 P~s~sv~~G~svtL~C~~s~-~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSS-GNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESS-SCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCeeEECCCCCEEEEEEECC-CCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            45688899999999998865 32  2347898642  110            0113443332  3457789999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ++.|.|....
T Consensus        86 sa~YyCA~~~   95 (111)
T d1cd0a_          86 EADYYCQSYD   95 (111)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeecc
Confidence            9999998764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.4e-06  Score=39.76  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=42.4

Q ss_pred             eEEeecCCeEEEEEEEeecCCC---CeEE--EeeCCE-Ec----------CC-CCCE--EEEEcCcEEEEEEcccCCCCC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCR---PQVI--WYKETL-KL----------DT-TERR--IMETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~---p~~~--w~~~~~-~l----------~~-~~~~--~~~~~~~~~~l~~~~~~~~~~   76 (106)
                      .+.+..|+++.|.|.... ...   ..+.  |.++.. .+          .. ..++  .........+|.|.++..+|.
T Consensus         3 ~V~a~~G~tv~L~C~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           3 KIQAYFNETADLPCQFAN-SQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEEETTSCEEEECCCCC-TTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC
T ss_pred             EEEEEeCCcEEEEEEEeC-CCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC
Confidence            356788999999998754 222   2233  333321 10          00 0011  111223345799999999999


Q ss_pred             EeeEEEEEcCC
Q psy17205         77 GNYSCVAENSM   87 (106)
Q Consensus        77 g~y~C~~~~~~   87 (106)
                      |.|.|.+....
T Consensus        82 G~Y~C~V~~~~   92 (110)
T d1ncna_          82 GLYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEecC
Confidence            99999987543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=3.2e-06  Score=41.03  Aligned_cols=73  Identities=12%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CC---------CCCEEEEE-cCcEEEEEEcccC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DT---------TERRIMET-RGRRHTLVIRKVL   72 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~---------~~~~~~~~-~~~~~~l~~~~~~   72 (106)
                      ...+..+.+.+|+.++|.|....  ....+.||+..  .   .+   ..         ..++.... ......|.|.++.
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQNL--NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEECS--CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEec--CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            45567788899999999998754  45688998642  0   00   00         01111111 1234469999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|++.|.|....
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999998764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=6.7e-06  Score=39.73  Aligned_cols=73  Identities=12%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             eccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c---CC---------CCCEEEE-EcCcEEEEEEcccC
Q psy17205         11 DTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L---DT---------TERRIME-TRGRRHTLVIRKVL   72 (106)
Q Consensus        11 ~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l---~~---------~~~~~~~-~~~~~~~l~~~~~~   72 (106)
                      +..+..+.+..|+++.|.|....  -...+.||+..  ..   +   ..         ..++... .......|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM--NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS--CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEEEC--CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            45566777889999999998754  45678998731  11   0   00         0111111 11223469999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|++.|.|-...
T Consensus        81 ~~DsavYyCA~~~   93 (112)
T d2bnub1          81 PSQTSVYFCASSY   93 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEeecC
Confidence            9999999997653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.26  E-value=2.6e-06  Score=41.32  Aligned_cols=74  Identities=20%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC-----EEc---C---------CCCCEEEEE-cCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET-----LKL---D---------TTERRIMET-RGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~-----~~l---~---------~~~~~~~~~-~~~~~~l~~~~~   71 (106)
                      +...+..+.+.+|+.+.|.|....  ....+.||+..     ..+   .         ...++.... ......|.|.++
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPIS--GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCT--TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCC--CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            445677788889999999998655  34578998752     011   0         011222221 233457999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      +.+|++.|.|-...
T Consensus        82 ~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          82 ELEDSAMYFCASSL   95 (113)
T ss_dssp             CGGGCEEECEEEES
T ss_pred             CcCCceeEEEEeec
Confidence            99999999998653

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-05  Score=38.11  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=42.6

Q ss_pred             eecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC--EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER--RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ...|+...|.|.+.+ +.+.  .+.|.+++..+.....  ......+.........+...+.+.|.|.+....
T Consensus        16 ~~~~~~~tL~C~~~g-FyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSG-FHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEE-EBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECc-cCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            346888899999999 7433  7899999988754311  111122323333333444456678999998753

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.5e-05  Score=37.33  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=47.7

Q ss_pred             CeEEeecCCeEEEEEEEeecCC--CCeEEEeeCCE-----Ec---------CCCCCEEEEE--cCcEEEEEEcccCCCCC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAFC--RPQVIWYKETL-----KL---------DTTERRIMET--RGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~~-----~l---------~~~~~~~~~~--~~~~~~l~~~~~~~~~~   76 (106)
                      +.+....|+.+.|.|.... ..  ...+.|++...     .+         ....+.....  ......|.|.+++.+|.
T Consensus         4 ~~v~~~~G~svtl~C~~~~-~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPP-TGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             EEEEECTTCCEEEEEECCC-CTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEEEcCCCCEEEEEEECC-CCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            4467789999999998654 32  34567986321     11         0112343332  24567899999999999


Q ss_pred             EeeEEEEEcC
Q psy17205         77 GNYSCVAENS   86 (106)
Q Consensus        77 g~y~C~~~~~   86 (106)
                      |.|.|.+...
T Consensus        83 G~Y~C~v~~~   92 (108)
T d1hkfa_          83 GHYWCRIYRP   92 (108)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEecC
Confidence            9999988754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4e-06  Score=40.95  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=47.4

Q ss_pred             CCeEEeecCCeEEEEEEEeec---C---CCCeEEEeeCCEEc--------CC---------CCCEEEEEc--CcEEEEEE
Q psy17205         14 ERRIIETRGRRHTLIFFFHFA---F---CRPQVIWYKETLKL--------DT---------TERRIMETR--GRRHTLVI   68 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~---~---p~p~~~w~~~~~~l--------~~---------~~~~~~~~~--~~~~~l~~   68 (106)
                      +..+.+.+|+.+.|.|.....   .   ....+.|++....-        ..         ..+..+...  ....+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            456888899999999987530   1   11357888753110        00         123333221  23567999


Q ss_pred             cccCCCCCEeeEEEEEcC
Q psy17205         69 RKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        69 ~~~~~~~~g~y~C~~~~~   86 (106)
                      .++...|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999998753

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.16  E-value=1.4e-05  Score=37.90  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=41.1

Q ss_pred             eecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE---EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR---IMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ...|+..+|.|.+.+ +-+  ..+.|.++|..+..+...   .....+.........+...+...|.|.+....
T Consensus        14 ~~~~~~~tL~C~v~g-FyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDN-IFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEE-ECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEe-EECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            346788899999999 633  578999998776543111   11111222222233333455668999998753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.16  E-value=4.3e-05  Score=37.47  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             eeeccCCeEEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc-----------C---CCCCEEEEEc--CcEEE
Q psy17205          9 KLDTTERRIIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL-----------D---TTERRIMETR--GRRHT   65 (106)
Q Consensus         9 ~~~~~~~~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l-----------~---~~~~~~~~~~--~~~~~   65 (106)
                      .+..++..+....|+.+.|.|...+ ..  ...+.||+..     ..+           .   ...++.....  .....
T Consensus         3 ~l~Qp~~s~t~~~g~t~~LsC~~sg-~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~   81 (123)
T d1hxmb1           3 HLEQPQISSTKTLSKTARLECVVSG-ITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (123)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEES-SCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CeECCCCeEEeCCCCCEEEEEEEcC-CCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeecccccee
Confidence            3455566677888999999999876 43  3468888631     101           0   1124555432  34567


Q ss_pred             EEEcccCCCCCEeeEEEEEc
Q psy17205         66 LVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        66 l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.|.++..+|.+.|.|-...
T Consensus        82 L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          82 LTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             EEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccccccCcEEEEeeeC
Confidence            99999999999999998653

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.6e-05  Score=38.67  Aligned_cols=71  Identities=13%  Similarity=0.145  Sum_probs=45.9

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCC---eEEEeeCC--EE---c----CC------CCCE--EEEEcCcEEEEEEcccCC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRP---QVIWYKET--LK---L----DT------TERR--IMETRGRRHTLVIRKVLF   73 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p---~~~w~~~~--~~---l----~~------~~~~--~~~~~~~~~~l~~~~~~~   73 (106)
                      +..+.+..|+.++|.|.... ....   .+.|++..  ..   +    ..      ..+.  ..........|.|.+++.
T Consensus         6 P~~~~~~~g~~vtL~C~~~~-~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYAS-PGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECC-CSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCEEEEeCCCcEEEEEEccc-cccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            44677888999999999865 3322   58898742  10   0    00      0000  111123456899999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      .|.+.|.|.+..
T Consensus        85 ~Dsa~YyCa~~~   96 (118)
T d1i8lc_          85 MDTGLYICKVEL   96 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEEEeEec
Confidence            999999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.10  E-value=4e-06  Score=40.55  Aligned_cols=72  Identities=15%  Similarity=0.318  Sum_probs=46.8

Q ss_pred             ccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--E---Ec---CC-C--------CCEEEE-EcCcEEEEEEcccCC
Q psy17205         12 TTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--L---KL---DT-T--------ERRIME-TRGRRHTLVIRKVLF   73 (106)
Q Consensus        12 ~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~---~l---~~-~--------~~~~~~-~~~~~~~l~~~~~~~   73 (106)
                      ..+..+.+..|+.++|.|....  ....+.||+..  .   .+   .. .        .+.... .......|.|..+..
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~--~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM--GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT--CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC--CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            4566778889999999998654  35678998742  1   00   00 0        011111 112334689999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|++.|.|-+..
T Consensus        81 ~Dsa~YyCA~~~   92 (112)
T d2cdeb1          81 SHTSQYLCASSE   92 (112)
T ss_dssp             TTCSEEEEEEEC
T ss_pred             cccccEEEEEec
Confidence            999999998764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=5.5e-05  Score=36.39  Aligned_cols=72  Identities=18%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             CeEEeecCCeEEEEEEEeec-CCCCeEEEeeCC-----EEcC---C-----C----CCEEEEE--cCcEEEEEEcccCCC
Q psy17205         15 RRIIETRGRRHTLIFFFHFA-FCRPQVIWYKET-----LKLD---T-----T----ERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~-~p~p~~~w~~~~-----~~l~---~-----~----~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      ..+.+.+|+++.|.|...+. .....+.|++..     ..+.   .     .    .++.+..  ......|+|.++...
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            34667789999999987540 234568898631     1110   0     0    1333333  234567999999999


Q ss_pred             CCEeeEEEEEcC
Q psy17205         75 DFGNYSCVAENS   86 (106)
Q Consensus        75 ~~g~y~C~~~~~   86 (106)
                      |+|.|.|.+...
T Consensus        87 Dsg~Y~Cav~~~   98 (113)
T d1smoa_          87 DSGLYQCVIYQP   98 (113)
T ss_dssp             GCEEEEEEECCT
T ss_pred             cCceEEEEEECC
Confidence            999999987654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.7e-05  Score=38.15  Aligned_cols=73  Identities=16%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             CCeEEeecCCeEEEEEEEeec--CC---CCeEEEeeCC----EEc-----------CCCCCEEEEE--cCcEEEEEEccc
Q psy17205         14 ERRIIETRGRRHTLIFFFHFA--FC---RPQVIWYKET----LKL-----------DTTERRIMET--RGRRHTLVIRKV   71 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~--~p---~p~~~w~~~~----~~l-----------~~~~~~~~~~--~~~~~~l~~~~~   71 (106)
                      +..+.+..|+.+.|.|....+  .+   .-.+.|++..    ..+           ....+..+..  .....+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            456888999999999987530  11   1245566542    111           0112333322  134557999999


Q ss_pred             CCCCCEeeEEEEEcC
Q psy17205         72 LFTDFGNYSCVAENS   86 (106)
Q Consensus        72 ~~~~~g~y~C~~~~~   86 (106)
                      +..|.|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          87 KPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhHCEEEEEEEEeC
Confidence            999999999998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.02  E-value=7.8e-05  Score=35.84  Aligned_cols=74  Identities=15%  Similarity=0.243  Sum_probs=47.8

Q ss_pred             eeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCC--EE---c---C-CCC---------CEEEEEcCcEEEEEEccc
Q psy17205         10 LDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKET--LK---L---D-TTE---------RRIMETRGRRHTLVIRKV   71 (106)
Q Consensus        10 ~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~--~~---l---~-~~~---------~~~~~~~~~~~~l~~~~~   71 (106)
                      +...+..+.+..|+.+.|.|.... .-...+.||+..  ..   |   . ...         ++.... .....+.|...
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~   81 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKN-SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESC-TTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEec-CCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecC
Confidence            445666778889999999999876 556789999752  11   1   0 110         111111 11235778888


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|.+.|.|....
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            88999999998653

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.00  E-value=7.5e-05  Score=35.10  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCC---EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++...|.|.+.+ +.++  .+.|.++|..+..+..   ......+.........+...+...|.|.+....
T Consensus        17 ~~~~~tL~C~v~~-F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNG-FYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEE-EBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEee-eECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3556689999998 6443  7899999887754311   111112334444444555667778999998753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.7e-07  Score=42.25  Aligned_cols=74  Identities=16%  Similarity=0.106  Sum_probs=46.0

Q ss_pred             ceeeccCCeEEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205          8 LKLDTTERRIIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus         8 ~~~~~~~~~~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      |.+...+. ..+..|++++|.|....  +...+.+++++.......+. ....+....|.|..+...|.|.|.|....
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~~--~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGGQ--ETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCT--TCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCCC--CCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            34444444 34579999999998643  45567777776421100000 00012234799999999999999998764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9e-05  Score=34.59  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCC--CEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         20 TRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTE--RRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~--~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..++..+|.|.+.+ + |. ..+.|.++|..+....  ......  .+.........+...+...|.|.+...
T Consensus        13 ~~~~~~tL~C~~~g-FyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALN-YYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEE-EBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCCEEEEEEEee-EECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            35677899999999 6 33 3789999998875321  111211  222323333334445566799999875

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.96  E-value=2e-07  Score=44.14  Aligned_cols=71  Identities=17%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeC--CEEcC------------CCCCEEEEE--cCcEEEEEEcccCCCCCEeeE
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKE--TLKLD------------TTERRIMET--RGRRHTLVIRKVLFTDFGNYS   80 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~--~~~l~------------~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~   80 (106)
                      +.+.+|++++|.|....  ....+.||+.  +..+.            ...++....  ......|.|.++..+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~--~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT--SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS--CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeC--CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            45678999999997654  3457899873  11110            011222211  123456999999999999999


Q ss_pred             EEEEcCCCc
Q psy17205         81 CVAENSMGK   89 (106)
Q Consensus        81 C~~~~~~~~   89 (106)
                      |-.....+.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            987765443

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=9.9e-05  Score=34.21  Aligned_cols=65  Identities=15%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +-+  ..+.|.+++..+.... .....  ++.........+...+...|.|.+....
T Consensus        14 ~~~~~~L~C~~~g-F~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFS-FYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEE-EBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEEe-EECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence            4557899999999 643  3789999998765432 11111  1222222222233345567999998653

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.00013  Score=34.00  Aligned_cols=67  Identities=21%  Similarity=0.251  Sum_probs=42.3

Q ss_pred             ecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEc--CcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETR--GRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..++.+.|.|.+.+ +.+.  .+.|.+++..+...........  +.........+...+...|.|.+....
T Consensus        13 ~~~~~~tL~C~~~g-FyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYD-FYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEE-EBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEe-EECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            35788999999999 6443  7889999987654322222221  223333333444555568999998753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.88  E-value=0.00014  Score=34.39  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=38.7

Q ss_pred             ecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCCC---EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         20 TRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..++..+|.|.+.+ + |. ..+.|.++|..+..+..   ......+.........+...+...|.|.+...
T Consensus        17 ~~~~~~tL~C~v~g-F~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDK-FSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEE-EBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEe-EECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEEC
Confidence            45777889999999 6 33 48899999987754311   11111122222222222334445799999875

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.88  E-value=0.00015  Score=34.04  Aligned_cols=67  Identities=15%  Similarity=0.108  Sum_probs=41.0

Q ss_pred             ecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE---EEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR---IMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..++.+.|.|.+.+ +.+  ..+.|.+++..+..+...   .....+.........+...+...|.|.+....
T Consensus        15 ~~~~~~tL~C~~~g-FyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          15 NTREPVMLACYVWG-FYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             SSSCSEEEEEEEEE-EBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEE-EECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCC
Confidence            45677899999999 743  478999999877543211   11112223222223334455568999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.86  E-value=0.00015  Score=34.09  Aligned_cols=66  Identities=15%  Similarity=0.191  Sum_probs=39.5

Q ss_pred             ecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         20 TRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..++...|.|.+.+ +.+  ..+.|.++|..+..+.   .......+.........+...+...|.|.+...
T Consensus        17 ~~~~~~tL~C~~~g-FyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDN-IFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEE-ECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEE-EECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            45778899999999 743  4789999998775431   111111122222222233334556799999865

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.00015  Score=34.82  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=47.7

Q ss_pred             CeEEeecCCeEEEEEEEeecC--CCCeEEEeeC--CE----EcC---C--------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         15 RRIIETRGRRHTLIFFFHFAF--CRPQVIWYKE--TL----KLD---T--------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        15 ~~~~~~~g~~~~~~c~~~~~~--p~p~~~w~~~--~~----~l~---~--------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ....+.+|+++.+.|...+ .  ..-.+.|++.  +.    .+.   .        ..++.+..  ......++|.+++.
T Consensus         3 ~~~~~~eG~svtl~C~ys~-~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNI-MKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEEEECTTCCEEEEEECCH-HHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCcCCCCCCEEEEEEECC-CCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            3567789999999999865 3  3446788873  21    110   0        01333333  23456799999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.|.|.|.....
T Consensus        82 eDsa~YyCa~~~~   94 (110)
T d1u9ka_          82 TDSGLYRCVIYHP   94 (110)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999988654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.0002  Score=33.64  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             ecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..|+..+|.|.+.+ +.+  ..+.|.+++..+..........  .+.........+...+...|.|.+....
T Consensus        16 ~~~~~~tL~C~v~g-f~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQ-FHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEE-EBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEE-EECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            45778899999999 633  4789999998776542222211  1222233333344456668999998753

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0002  Score=32.00  Aligned_cols=59  Identities=20%  Similarity=0.307  Sum_probs=41.2

Q ss_pred             eecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEc
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAEN   85 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   85 (106)
                      ...|..+.|.|.... ...+  ...|.+++..|.....-     .....+.+..  ..++|.|.|++..
T Consensus         9 ~~~~sk~~LtCnLt~-s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLND-SATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEES-CSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCC-CCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEcC
Confidence            356888899999987 4433  56899999988764321     2233466665  5588999999764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=0.00031  Score=32.32  Aligned_cols=62  Identities=15%  Similarity=0.142  Sum_probs=37.4

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcE---EEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRR---HTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .++.+.|.|.+.+ +.+.  .+.|.++|..+..+...   .....+..   ..+.+.   ..+...|.|.+...
T Consensus        14 ~~~~~~L~C~a~g-FyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALG-FYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEES-CBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEe-EECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEEC
Confidence            4568999999999 7554  67899999877643211   11111222   223333   33344699998764

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00044  Score=32.26  Aligned_cols=68  Identities=19%  Similarity=0.171  Sum_probs=48.2

Q ss_pred             CCeEEeecCCeEEEEEEEeecCCCCeEE-EeeCCEEc-CCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         14 ERRIIETRGRRHTLIFFFHFAFCRPQVI-WYKETLKL-DTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        14 ~~~~~~~~g~~~~~~c~~~~~~p~p~~~-w~~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      +..+.+.+|+++.+.|....  |...+. |...+..+ +.+..+......   -++|.+.+..+.|.|.|.+...
T Consensus        12 p~~V~v~eg~~~vIPC~vT~--P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVTS--PNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBSC--TTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCCC--CCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEEC
Confidence            44577889999999999977  655543 44455444 344444444433   5889999999999999999765

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.59  E-value=0.00028  Score=32.95  Aligned_cols=63  Identities=19%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             cCCeEEEEEEEeecC-CCC-eEEEeeCCEEcCCCC--CEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAF-CRP-QVIWYKETLKLDTTE--RRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p~p-~~~w~~~~~~l~~~~--~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ + |.. .+.|.+++..+....  .......+...   .|.+.   ..+...|.|.+....
T Consensus        15 ~~~~vtL~C~a~g-F~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSG-FYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEE-EBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEE-EECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            3557899999999 5 433 788999987664431  11111122222   34444   344557999998753

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.58  E-value=0.00054  Score=31.99  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCC---EEEEEcCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTER---RIMETRGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++...|.|.+.+ +.+  ..+.|.++|..+..+..   ......+.........+...+...|.|.+....
T Consensus        15 ~~~~~tL~C~~~g-F~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          15 LNHHNLLVCSVTD-FYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             ----CEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEee-eECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            4556689999998 644  47899999876654311   111112223333333444556678999998753

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00082  Score=32.38  Aligned_cols=67  Identities=9%  Similarity=-0.026  Sum_probs=40.5

Q ss_pred             EeecCCeEEEEEEEeecCCCC--eEEE-eeCC-E---Ec------------CCCCCEEE--EEcCcEEEEEEcccCCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCRP--QVIW-YKET-L---KL------------DTTERRIM--ETRGRRHTLVIRKVLFTDF   76 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p--~~~w-~~~~-~---~l------------~~~~~~~~--~~~~~~~~l~~~~~~~~~~   76 (106)
                      .+..|+.+.|.|.... ....  ...| ++.. .   .+            ....++..  ........|.|.++...|.
T Consensus        11 ~v~~g~svtL~C~~s~-~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSY-NLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EECBTTBEEEEEEESC-CSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             EEeCCCCEEEEEEEec-CCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            3557999999999865 4322  2334 3321 0   00            00112222  2334566799999999999


Q ss_pred             EeeEEEEEc
Q psy17205         77 GNYSCVAEN   85 (106)
Q Consensus        77 g~y~C~~~~   85 (106)
                      +.|.|-+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999997654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00053  Score=32.40  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             cCCeEEEEEEEeecCCC-C-eEEEeeCCEEcCCCCCE--EEEEcCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR-P-QVIWYKETLKLDTTERR--IMETRGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~-p-~~~w~~~~~~l~~~~~~--~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +.+ . .+.|.++|..+......  ....++..   ..|.+..-.......|.|.+....
T Consensus        20 ~~~tv~L~Cl~~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSG-YTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEE-ECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEE-EECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            4557889999998 533 3 68899999887653211  11222222   235555443334567999999764

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00023  Score=33.58  Aligned_cols=66  Identities=14%  Similarity=0.275  Sum_probs=39.5

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE---EEEEcCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR---IMETRGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~---~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +.+.  .+.|.++|..+......   ....++..   ..|.+..........|.|.+....
T Consensus        19 ~~~~~tL~C~v~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISD-FYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             cCCcEEEEEEEEe-eCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3667899999998 6443  68899999877653111   11111222   234454433233457999998753

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0007  Score=31.44  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=37.6

Q ss_pred             cCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEE--EE-EcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRI--ME-TRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~--~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+..+.|.|.+.+ +.+.  .+.|.++|..+.......  .. ..+.........+...+...|.|.+...
T Consensus        14 ~~~~~~L~C~~~g-FyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALG-FYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEE-EBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEe-EeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEEC
Confidence            3567899999999 7554  678999998765432110  11 1111222222222333445799999864

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.46  E-value=0.00066  Score=31.46  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEE----EEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRI----METRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ....+.|.|.+.+ +-+  -.+.|.+++..+.......    ....+.........+...+...|.|.+...
T Consensus        14 ~~~~~~L~C~~~g-FyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          14 SEGNITVTCRASG-FYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSSEEEEEEEEEE-EBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCCEEEEEEEEE-EECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            3557899999999 643  3789999998776542221    111122222222223334445699998864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00018  Score=34.18  Aligned_cols=66  Identities=14%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE----EEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR----IMETRGR---RHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~----~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++.++|.|.+.+ +-+  ..+.|.+++..+......    ....++.   ...|.+..-.......|.|.+....
T Consensus        18 ~~~~vtL~Clv~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          18 SRDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA   92 (105)
T ss_dssp             SSCCEEEEEEEEE-EBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTT
T ss_pred             cCCcEEEEEEEEe-eeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            4667899999988 533  489999999876543111    1111122   2245555544445567999998754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.43  E-value=0.001  Score=31.42  Aligned_cols=67  Identities=13%  Similarity=0.236  Sum_probs=40.5

Q ss_pred             ecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEE--cCcEEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMET--RGRRHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..|+..+|.|.+.+ +-+.  .+.|.+++..+..........  ++.........+...+...|.|.+....
T Consensus        16 e~~~~~tL~C~v~g-F~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSN-LFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEE-EBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEee-EECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            45777899999999 7543  678999998765433222221  2222222222233445557999999763

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.0003  Score=33.16  Aligned_cols=66  Identities=14%  Similarity=0.203  Sum_probs=40.0

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCC---EEEEEcCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTER---RIMETRGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~---~~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +-+  ..+.|.++|..+..+..   .....++..   ..|.+..-.......|.|.+....
T Consensus        19 ~~~~~tl~C~v~~-f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITD-FYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCCeEEEEEEEee-eeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3567899999998 643  37999999877654311   011111222   235555444344568999998753

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00027  Score=33.26  Aligned_cols=66  Identities=11%  Similarity=0.139  Sum_probs=38.1

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .++.+.|.|.+.+ +.+  ..+.|.+++.............++.   ...|.+..-.. +.+.|.|.+.....
T Consensus        19 ~~~~~tl~Cl~~g-f~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~   89 (101)
T d1kcvh2          19 AASAVTLGCLVKG-YFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKS   89 (101)
T ss_dssp             TCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEE-EeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCC
Confidence            5678999999998 533  3789987764321110001112222   22455555444 35689999987543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.37  E-value=0.0007  Score=32.87  Aligned_cols=66  Identities=12%  Similarity=0.118  Sum_probs=44.5

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeCC--EE------cC----------CCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKET--LK------LD----------TTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~~------l~----------~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ...  -.+.|++..  ..      +.          ...|+.+..  ..+...|.|.++..+|
T Consensus        11 ~vkPG~sl~LsC~~SG-~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYG-GSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEES-SCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcc-ccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            4568999999999987 532  356776531  10      11          123565554  2345679999999999


Q ss_pred             CEeeEEEEE
Q psy17205         76 FGNYSCVAE   84 (106)
Q Consensus        76 ~g~y~C~~~   84 (106)
                      .+.|.|-..
T Consensus        90 tA~YYCAr~   98 (120)
T d1dn0b1          90 TAVYYCARP   98 (120)
T ss_dssp             CEEEEEEEC
T ss_pred             ccEEEEEee
Confidence            999999543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00057  Score=32.20  Aligned_cols=67  Identities=9%  Similarity=0.131  Sum_probs=35.9

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEEcCcE---EEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMETRGRR---HTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .++.+.|.|.+.+ +.+  ..+.|..++.............++..   ..|.+..... +.+.|.|.+......
T Consensus        19 ~~~~~~l~Cl~~g-f~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          19 SGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASS   90 (102)
T ss_dssp             ---CEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCcEEEEEEEee-eeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCC
Confidence            4678999999999 643  37899766532111000011222222   2455555544 246799999975433

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.24  E-value=0.0011  Score=32.01  Aligned_cols=68  Identities=15%  Similarity=0.181  Sum_probs=45.1

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC-----------------EEcC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET-----------------LKLD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----------------~~l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+++.|.|.+.| ..  .-.+.|++.-                 ....  ...|+.+...  .+...|.+.++..
T Consensus        10 ~~vkpg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASG-FNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            45678999999999987 53  2356665531                 0100  1235555442  4456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jpth1          89 EDTAVYYCARDT  100 (117)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCceEEEEeecC
Confidence            999999997554

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.24  E-value=0.0012  Score=31.93  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=44.6

Q ss_pred             EeecCCeEEEEEEEeecCCCC---eEEEeeC--CEE------c--------C--CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCRP---QVIWYKE--TLK------L--------D--TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~p---~~~w~~~--~~~------l--------~--~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.| ..-.   .+.|++.  ++.      +        .  ...|+.+..+  .+...|.+.++..+
T Consensus        11 ~vkPg~sl~LsC~~SG-~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTG-YSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             EECTTSCEEEEEEEES-SCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEcc-ccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            4668999999999988 5432   3667652  111      0        0  1135555442  44567999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |...|.|-...
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999997543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0015  Score=31.70  Aligned_cols=68  Identities=10%  Similarity=0.192  Sum_probs=45.0

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE------cC-----------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK------LD-----------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~------l~-----------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.+ ..  .-.+.|++..  ..      +.           ...|+.+..  ..+...|.|..+..
T Consensus        10 ~~vkpG~sl~LsC~~SG-~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1          10 ELVKPGASVKISCKASG-YSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEcc-ccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            34678999999999987 43  2356776531  10      10           123554443  24456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999998653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.00087  Score=32.51  Aligned_cols=66  Identities=11%  Similarity=0.149  Sum_probs=43.5

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeC--CEE------cC-----------CCCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLK------LD-----------TTERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~------l~-----------~~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|...+ ..  .-.+.|++.  +..      +.           ...|+.+..  ..+...|.|.++..+
T Consensus        11 ~~kpG~Sv~LsC~~SG-~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKASG-YTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEET-CCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEec-cCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            4668999999999886 42  234677653  110      00           113554443  234567999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |.+.|.|-..
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.20  E-value=0.0024  Score=30.93  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeCC--EE------cC----------CCCCEEEEEc--CcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKET--LK------LD----------TTERRIMETR--GRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~~------l~----------~~~~~~~~~~--~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|...+ ...  -.+.|++.-  +.      +.          ...|+.+...  .+...|.|..+..+|
T Consensus        10 ~vkPg~sl~LsC~~SG-~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASG-NTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEES-CTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcC-CCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            4568999999999987 542  346776631  00      11          0135555443  345679999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      ...|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.0012  Score=31.87  Aligned_cols=66  Identities=11%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeC--CE------EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKE--TL------KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|...| ..  .-.+.|++.  +.      .+.           ...|+.+...  .+...|.|.++..+
T Consensus        11 ~~kPG~sl~LsC~~SG-~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          11 LVKPGASVKVSCKASG-YSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEcc-ccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            4678999999999887 42  335667653  10      011           0134544432  34557999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.20  E-value=0.0024  Score=30.96  Aligned_cols=67  Identities=18%  Similarity=0.269  Sum_probs=44.5

Q ss_pred             EeecCCeEEEEEEEeecCC----CCeEEEeeC--CEE---c-----------C--CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC----RPQVIWYKE--TLK---L-----------D--TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p----~p~~~w~~~--~~~---l-----------~--~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      .+..|+.+.|.|...| ..    ...+.|++.  +..   +           .  ...|+....  ..+...|.|..++.
T Consensus        11 ~v~PG~sv~LsC~~SG-~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSG-FSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             BCCSSSEEEEEEEEES-CCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eECCCCCEEEEEEEcc-cCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            3567999999999876 42    246789863  110   0           0  023444433  23456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999997554

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0016  Score=30.85  Aligned_cols=66  Identities=15%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEeecCC-C-CeEEEeeCCEEcCCCCCEEEE----EcCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFC-R-PQVIWYKETLKLDTTERRIME----TRGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p-~-p~~~w~~~~~~l~~~~~~~~~----~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +- . ..+.|.++|..+.........    .++..   ..|.+..-.......|.|.+....
T Consensus        19 ~~~~~tL~Cl~~~-f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEE-eECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4567899999998 53 3 479999998776543111000    01111   235555444334567999998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.18  E-value=0.0025  Score=30.69  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeC--CEE------c--------C--CCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLK------L--------D--TTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~------l--------~--~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.  +..      +        .  ...|+.+..  ..+...|.|..+..+|
T Consensus        11 lvkPg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSG-TSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             EECTTSCEEEEEEEES-SCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEee-ecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            4568999999999987 53  335677653  110      0        0  123554443  2446679999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .+.|.|-....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999976543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.16  E-value=0.0015  Score=32.24  Aligned_cols=67  Identities=21%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             EeecCCeEEEEEEEeecCCC----CeEEEeeCC--EE---c---C----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR----PQVIWYKET--LK---L---D----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~--~~---l---~----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      .+..|+.+.|.|...| ...    ..+.|++..  ..   +   .          ...|+.+...  .+...|.|.++..
T Consensus        11 ~vkpg~Sl~LsC~~SG-~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSG-FSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             EECTTCCEEEEEEEES-SCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEeC-CCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            4567999999999886 432    257887631  00   0   0          1235544432  3456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|...|.|-...
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999997553

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.13  E-value=0.0008  Score=31.49  Aligned_cols=64  Identities=14%  Similarity=0.097  Sum_probs=35.3

Q ss_pred             CCeEEEEEEEeecCCCC--eEEEeeCCEEcCC----CC---CEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         22 GRRHTLIFFFHFAFCRP--QVIWYKETLKLDT----TE---RRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~----~~---~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ...+.|.|.+.+ +.+.  .+.|.+++..+..    ..   ...-...+.........+...+...|.|.+...
T Consensus        14 ~~~vtL~C~~~g-FyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARD-YYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEE-EBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEE-EcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            447899999999 7554  6789998754321    10   111111222222222233344445799999753

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0022  Score=30.31  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             ecCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCCCEEE--E-----EcCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTERRIM--E-----TRGR---RHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~~~~--~-----~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..++.+.|.|.+.+ + |. ..+.|+++|..+........  .     ..+.   ...|.+..-.......|.|.+....
T Consensus        18 ~~~~~~tl~C~~~~-f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          18 ALNELVTLTCLARG-FSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TSSSEEEEEEEEEE-ESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEE-eECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            35778999999998 5 33 37999999987754321110  0     0111   2235555443334568999998643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.11  E-value=0.003  Score=30.40  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=44.7

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE------cC----------CCCCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK------LD----------TTERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~------l~----------~~~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.-  ..      +.          ...|+.+..  ..+...|.+.++..+|
T Consensus        11 ~vkPg~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSG-FSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             EECTTSCEEEEEEEES-SCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcc-cccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            4578999999999987 43  2356676531  10      10          112444443  3445679999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      .+.|.|-...
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.0027  Score=30.65  Aligned_cols=68  Identities=10%  Similarity=0.140  Sum_probs=45.1

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..-  -.+.|++.-  +      .+.           ...|+.+...  .+...|.|.++..
T Consensus         9 ~~~kPG~sl~LsC~~SG-~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASE-YTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             EEECTTCCEEEEEEESS-CCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcc-ccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            45678999999999987 532  356776531  0      011           1134544432  4455799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|...|.|-...
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1um5h1          88 EDSAVYYCARSS   99 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecc
Confidence            999999997543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.0023  Score=29.08  Aligned_cols=72  Identities=18%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEee-CC---EEcCCCC-CEEEEEc---CcEEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYK-ET---LKLDTTE-RRIMETR---GRRHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~-~~---~~l~~~~-~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ..+..|+.+.+.|+..--.-.|++.|-+ ++   ..|.... .......   .....|.+..+..+|.|.|.|.+.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            5677899999999997623468999965 33   2343322 2233332   3456789999999999999999876544

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.11  E-value=0.0021  Score=31.56  Aligned_cols=68  Identities=9%  Similarity=0.054  Sum_probs=44.5

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC----------------EE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET----------------LK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~----------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++.-                .. ..  ...|+.+...  .+...|.+..+..
T Consensus         9 ~~~kPg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~   87 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASG-GTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS   87 (130)
T ss_dssp             EEECTTCCEEEEEEETT-SCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEeC-CCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence            45678999999999987 43  2245665521                00 00  1235555442  3455799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        88 eDtAvYyCAr~~   99 (130)
T d1rhhb1          88 DDTAVYYCARDF   99 (130)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcEEEEEEeec
Confidence            999999997653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.10  E-value=0.0028  Score=29.95  Aligned_cols=67  Identities=10%  Similarity=0.159  Sum_probs=38.8

Q ss_pred             eecCCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCE--EEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERR--IMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~--~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      ...+..+.|.|.+.+ +-+.  .+.|.+++..+......  ....++...   .|.+..-..  ...|.|.+.....
T Consensus        21 ~~~~~~~~l~Clv~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~   94 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEK-FFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENN   94 (107)
T ss_dssp             GGSSSCEEEEEEEEE-ESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTS
T ss_pred             HccCCcEEEEEEEeE-EeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCC
Confidence            345678899999998 6433  68899988765543111  011122222   344443332  2369999987543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.09  E-value=0.0019  Score=31.18  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------Ec-----------CCCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KL-----------DTTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l-----------~~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++..  .      .+           ....|+.+..  ..+...|.|..++.
T Consensus        10 ~~~kPg~sv~LsC~~SG-~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSG-YTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            44678999999999987 53  2345666521  0      01           0123555444  23456799999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.+.|.|-....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999986643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0015  Score=30.12  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=39.0

Q ss_pred             EEeecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCC-CCCEeeEEEEEc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLF-TDFGNYSCVAEN   85 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~~~~   85 (106)
                      .+..-|..+.|.|+..+ .  ..+.|.+++..++.....         .|.+..-+. +++|.|.|....
T Consensus         9 kVSISGTtV~LTCP~~~-~--~~I~Wkkn~~~i~g~~~~---------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2           9 KVSISGTSVELTCPLDS-D--ENLKWEKNGQELPQKHDK---------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEEEETTEEEEECSSCC-C--TTCEEEETTEEECSCCCS---------EEEEESCCTTTSCEEEEEECSS
T ss_pred             EEEEeCCEEEEECCCCC-C--CceEEeeccccCCCCCCc---------EEEEccccccccCcceEEecCC
Confidence            34457999999998765 3  358999999887764211         344444433 689999996443

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.04  E-value=0.0028  Score=30.91  Aligned_cols=67  Identities=16%  Similarity=0.136  Sum_probs=44.6

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--E------Ec-C----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--L------KL-D----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~------~l-~----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      -.+..|+.+.|.|.+.| ...  -.+.|++..  +      .+ .          ...|+.+...  .+...|.+..+..
T Consensus         9 ~lvkpg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~   87 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASG-STDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKS   87 (124)
T ss_dssp             EECCTTCCEEEEEEEES-CSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcC-cccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccC
Confidence            34668999999999987 543  356776531  0      01 1          1134544432  3456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        88 eDtAvYYCAr~   98 (124)
T d1zvya1          88 EDTAIYTCGAT   98 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEeec
Confidence            99999999764

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.04  E-value=0.0025  Score=30.98  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE------cC-----------CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK------LD-----------TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~------l~-----------~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++..  ..      +.           ...|+.+..  ..+...|.|.++..
T Consensus        10 ~~~kpG~sv~LsC~~SG-~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_          10 ELVEPGASVKLSCTASG-FNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEec-CCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            45678999999999886 43  2356776531  10      00           112554443  23455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtAvYYCAr~   99 (121)
T d1j05b_          89 EDTAVYYCAPF   99 (121)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeEee
Confidence            99999999764

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00062  Score=31.99  Aligned_cols=65  Identities=17%  Similarity=0.239  Sum_probs=38.7

Q ss_pred             cCCeEEEEEEEeecCC--CCeEEEeeCCEEcCCCC--CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFC--RPQVIWYKETLKLDTTE--RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p--~p~~~w~~~~~~l~~~~--~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      ..+.+.|.|.+.+ +.  ...+.|.+++..+....  ......++.   ...|.+..-.......|.|.+...
T Consensus        17 ~~~~~tL~C~v~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITD-FFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEE-EBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCCcEEEEEEEEE-eECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            3567899999998 63  34789999987664321  111111122   223555444333456799999875

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.99  E-value=0.0031  Score=30.38  Aligned_cols=67  Identities=12%  Similarity=0.104  Sum_probs=44.3

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC----------------EE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET----------------LK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+++.|.|.+.| ...  -.+.|++.-                .. ..  ...|+.+...  .+...|.+.++..
T Consensus        10 ~~~kpg~sl~lsC~~SG-~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1          10 ELARPGASVKLSCRTSG-YSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             EECCTTCCEEEEEEEES-SCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            34568999999999997 532  356676521                10 01  1235555443  3455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jnhb1          89 EDSAVYSCSRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0032  Score=29.70  Aligned_cols=66  Identities=14%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEeecC-CC-CeEEEeeCCEEcCCCCCEEEE-E---cCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAF-CR-PQVIWYKETLKLDTTERRIME-T---RGR---RHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p~-p~~~w~~~~~~l~~~~~~~~~-~---~~~---~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ....+.|.|.+.+ + |. ..+.|.+++..+......... .   ++.   ...|.+..-.-.....|.|.+....
T Consensus        19 ~~~~~~L~Clv~~-f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEE-eeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3567899999998 5 33 479999998766543111100 0   111   2245555543344457999998754

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.97  E-value=0.0032  Score=30.77  Aligned_cols=68  Identities=12%  Similarity=0.194  Sum_probs=43.9

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC--C--------------EE-c--CCCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE--T--------------LK-L--DTTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~--------------~~-l--~~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.  +              .. .  ....++.+...  .+...|.+.++..
T Consensus        10 ~l~kPg~sl~LsC~~SG-~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1          10 ELAKPGASMKMSCRASG-YSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcc-CCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            45678999999999987 432  24556542  1              10 0  01235544432  3456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDtAvYYCAR~~  100 (125)
T d1rihh1          89 EDSAVYYCARES  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEeeeC
Confidence            999999997553

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.93  E-value=0.0037  Score=28.41  Aligned_cols=62  Identities=6%  Similarity=0.104  Sum_probs=37.0

Q ss_pred             CCeEEEEEEEeecCCCC--eEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEEcC
Q psy17205         22 GRRHTLIFFFHFAFCRP--QVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p--~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+...|.|.+.+ +.+.  .+.|.+++..............+....+.......  ...|.|.+...
T Consensus        13 ~~~~tl~Cl~~g-F~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~--~~~yTC~V~H~   76 (86)
T d1hxma2          13 KNGTNVACLVKE-FYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYED--SNSVTCSVQHD   76 (86)
T ss_dssp             EETTEEEEEEES-CBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETT--TTTCEEEEEET
T ss_pred             CCCCEEEEEEee-EECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCC--CCEEEEEEEEC
Confidence            345689999999 7543  67899988766543322222233333333333333  34699998864

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.005  Score=29.64  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeC--CE--------------EcC--CCCCEEEEEc--CcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKE--TL--------------KLD--TTERRIMETR--GRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~~--------------~l~--~~~~~~~~~~--~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ...  -.+.|++.  ++              ...  ...|+.+...  .+...|.+.++..+|
T Consensus        11 lvkPg~sl~LsC~~SG-~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSG-FPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             EECTTSCEEEEEEECS-SCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcC-CCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            4578999999999987 432  35667653  11              011  1235555543  345679999999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      .+.|.|-...
T Consensus        90 tAvYYCAr~~   99 (117)
T d1c5db1          90 TAIYFCTRED   99 (117)
T ss_dssp             CEEEEEEECC
T ss_pred             ceEEEEeccC
Confidence            9999996543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.87  E-value=0.0041  Score=30.01  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=43.8

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--E------EcCC-----------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--L------KLDT-----------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~------~l~~-----------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.-  .      .+..           ..|+.+...  .+...|.+.++..
T Consensus        10 ~~~kpg~sl~lsC~~SG-~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSG-YTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            45678999999999987 432  246675521  0      0110           135544432  3455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDTAvYYCAr~   99 (118)
T d2jelh1          89 EDSAIYYCARV   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceeeeEEEe
Confidence            99999999543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.85  E-value=0.005  Score=29.72  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeC--C---------------EEcC--CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKE--T---------------LKLD--TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~---------------~~l~--~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++.  +               ....  ...++.+..  ..+...|.+.++..
T Consensus        10 ~~~kPg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSG-FTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             EEECTTCCEEEEEEEES-SCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcc-ccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            45678999999999987 43  224555442  1               1111  112454443  23456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDtAvYYCAr~~  100 (118)
T d1ct8b1          89 EDSAIYYCARYR  100 (118)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEEeeec
Confidence            999999997643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.85  E-value=0.0012  Score=30.99  Aligned_cols=64  Identities=13%  Similarity=0.215  Sum_probs=38.3

Q ss_pred             CCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC--CEEEEEcCcE---EEEEEcccCCCCCEeeEEEEEcC
Q psy17205         22 GRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE--RRIMETRGRR---HTLVIRKVLFTDFGNYSCVAENS   86 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~--~~~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~   86 (106)
                      .+.+.|.|.+.+ +.+  ..+.|.+++.......  ......++..   ..|.+..........|.|.+...
T Consensus        19 ~~~~~L~C~v~~-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKG-FYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEE-EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEE-EECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            567889999998 643  4789999987654321  1111111221   23555554434455799999875

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.85  E-value=0.0046  Score=29.80  Aligned_cols=67  Identities=9%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeC--C--------------EE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKE--T--------------LK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~--------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++.  +              .. ..  ...++.+...  .+...|.|.+++.
T Consensus        10 ~~~kPG~sl~LsC~~SG-~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1          10 VVARPGASVKMSCKASG-YTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcc-cCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            45678999999999987 43  224556542  1              11 11  1124444432  3456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtAvYYCAr~   99 (117)
T d1mfah1          89 EDSAVYYCTRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEecc
Confidence            99999999753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0011  Score=31.11  Aligned_cols=66  Identities=14%  Similarity=0.224  Sum_probs=39.0

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC--CEEEEEcCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE--RRIMETRGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~--~~~~~~~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .++.+.|.|.+.+ +.+  ..+.|.+++.......  ......++..   ..|.+..-.......|.|.+....
T Consensus        18 ~~~~~tL~Clv~g-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKG-FYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEE-eECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4667899999998 633  4889999987654321  0111111222   235555443334457999998753

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.83  E-value=0.004  Score=30.46  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             EeecCCeEEEEEEEeecCC----CCeEEEeeC--CEE--------------cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC----RPQVIWYKE--TLK--------------LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p----~p~~~w~~~--~~~--------------l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      .+..|+.+.|.|...| ..    ...+.|++.  +..              ..  ...++.+..+  .+...|.|.+++.
T Consensus        11 lvkPg~sv~LsC~~SG-~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSG-FSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             EECTTCCEEEEEEEES-SCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEeC-CccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            4567999999999886 42    124568653  100              00  1235555443  3456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|...|.|-..
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999743

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.82  E-value=0.0019  Score=30.23  Aligned_cols=66  Identities=17%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC--CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE--RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~--~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ +-+  ..+.|.++|.......  ......++.   ...|.+..-.......|.|.+....
T Consensus        18 ~~~~~tl~C~v~g-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTD-FMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEE-EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEE-eECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678899999998 533  4789999986543210  000111121   2235555443334557999998643

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.80  E-value=0.006  Score=28.99  Aligned_cols=68  Identities=15%  Similarity=0.110  Sum_probs=44.6

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC--C-------EEc----------C--CCCCEEEEEc--CcEEEEEEccc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE--T-------LKL----------D--TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~-------~~l----------~--~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.  +       ...          .  ...++.+...  .+...|.+.++
T Consensus        10 ~~vkPG~Sl~LsC~~SG-~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASG-FTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CeECCCCCeEEEEEECC-CcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            45678999999999987 432  24566542  1       000          0  1125555542  44567999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|.+.|.|-...
T Consensus        89 ~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          89 KTEDTGIYYCVRGR  102 (109)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHhHCEEEEEEEcC
Confidence            99999999997543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.005  Score=29.00  Aligned_cols=65  Identities=12%  Similarity=0.109  Sum_probs=38.3

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCC--EE------cC-----------CCCCEEEEEc--CcEEEEEEcccCCCCCE
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKET--LK------LD-----------TTERRIMETR--GRRHTLVIRKVLFTDFG   77 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~--~~------l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~~~g   77 (106)
                      .|+.+.|.|.+.| ..-  -.+.|++..  +.      +.           ...|+.+...  .+...|.+.+++.+|.+
T Consensus         1 PG~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTA   79 (103)
T d1oari_           1 PGASVKLSCKASG-YTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSA   79 (103)
T ss_dssp             CCCCEEEEEECCS-SCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCS
T ss_pred             CCCCeEEEEEEEC-CChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccE
Confidence            4788999999987 432  356776531  11      11           1234544432  34557999999999999


Q ss_pred             eeEEEEEcC
Q psy17205         78 NYSCVAENS   86 (106)
Q Consensus        78 ~y~C~~~~~   86 (106)
                      .|.|-....
T Consensus        80 vYYCAr~~~   88 (103)
T d1oari_          80 VYYCARMWY   88 (103)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEeEEECC
Confidence            999976544

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.73  E-value=0.0071  Score=29.37  Aligned_cols=67  Identities=16%  Similarity=0.214  Sum_probs=43.9

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|...| ..  .-.+.|++..  +      .+.           ...|+.+...  .+...|.+.+++.+
T Consensus        11 lvkPG~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASG-FTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECc-ccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            4568999999999987 43  2245665521  0      011           1135555442  34556999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|-...
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.70  E-value=0.0078  Score=28.90  Aligned_cols=68  Identities=10%  Similarity=0.145  Sum_probs=44.5

Q ss_pred             eEEeecCCeEEEEEEEeecCCC--CeEEEeeC----------------CEE-cC--CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFCR--PQVIWYKE----------------TLK-LD--TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~----------------~~~-l~--~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      ...+..|+.+.|.|.+.| ...  -.+.|++.                +.. ..  ...|+.+...  .+...|.+.++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG-~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASG-YTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             EEEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEcc-CccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            456778999999999987 432  24556542                110 00  1135555432  345678999999


Q ss_pred             CCCCEeeEEEEE
Q psy17205         73 FTDFGNYSCVAE   84 (106)
Q Consensus        73 ~~~~g~y~C~~~   84 (106)
                      .+|.+.|.|-..
T Consensus        88 ~eDtAvYYCAr~   99 (116)
T d1mjuh1          88 SDDSAVYYCANK   99 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEccc
Confidence            999999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.69  E-value=0.0083  Score=29.03  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             EeecCCeEEEEEEEeecCCC----CeEEEeeCC--EE------cCC----------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR----PQVIWYKET--LK------LDT----------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~----p~~~w~~~~--~~------l~~----------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      .+..|+.+.|.|.+.| ...    -.+.|++..  ..      +..          ..|+.+..  ..+...|.|..+..
T Consensus        11 ~vkPg~sl~LsC~~SG-~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSG-FSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             EECSSSCEEEEEEEES-SCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             eECCCCCEEEEEEEcc-cccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            4568999999999987 532    246787631  11      111          13554444  24456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        90 eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 EDTAMYYCSREN  101 (120)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cceeEEEEEecC
Confidence            999999997553

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.68  E-value=0.0075  Score=29.46  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=44.0

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC--C--------------EE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE--T--------------LK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~--------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..-  -.+.|++.  +              .. ..  ...|+.+...  .+...|.+.++..
T Consensus        10 ~~~kPg~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASG-GSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             EEECTTCCEEEEEEEES-SCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            34568999999999987 432  23566542  1              10 00  1235554443  3456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999997653

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.65  E-value=0.00085  Score=31.90  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=41.4

Q ss_pred             eecCCeEEEEEEEeecCC--CCeEEEeeCC--EE------cC----------CCCCEEEEEc--CcEEEEEEcccCCCCC
Q psy17205         19 ETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK------LD----------TTERRIMETR--GRRHTLVIRKVLFTDF   76 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~------l~----------~~~~~~~~~~--~~~~~l~~~~~~~~~~   76 (106)
                      +..|+.+.|.|.+.+ ..  .-.+.|++..  ..      +.          ...|+.+..+  .+...|.|.++..+|.
T Consensus         5 vkPG~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASG-NTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECC-CCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            457999999998876 32  2345676531  00      11          1135555442  3455799999999999


Q ss_pred             EeeEEEEE
Q psy17205         77 GNYSCVAE   84 (106)
Q Consensus        77 g~y~C~~~   84 (106)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.65  E-value=0.00014  Score=34.45  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE--EEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR--IMETRGRRH---TLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~--~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+..+.|.|.+.+ +-+  ..+.|.+++..+......  ....++...   .|.+......+...|.|.+.....
T Consensus        19 ~~~~~~l~C~~~g-f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVND-FYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEE-EBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEE-eeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            3567889999998 543  379999999876543111  011112111   233333333345579999987643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.65  E-value=0.007  Score=29.54  Aligned_cols=68  Identities=13%  Similarity=0.134  Sum_probs=43.0

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--EE------c-CC----------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--LK------L-DT----------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~~------l-~~----------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      -.+..|+.+.|.|.+.| ...  -.+.|++.-  +.      + ..          ..++.+...  .+...|.+.++..
T Consensus         9 ~lvkPg~sl~LsC~~SG-~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSG-ATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             EEECTTCCEEEEEECC--CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECC-CCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            34568999999999887 432  246676531  00      1 01          135555432  3445699999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997553

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.59  E-value=0.0095  Score=28.79  Aligned_cols=68  Identities=12%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC----------------E-EcC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET----------------L-KLD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----------------~-~l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      -.+..|+.+.|.|.+.+ ...  -.+.|++.-                . ...  ...|+.+...  .+...|.+.++..
T Consensus        10 ~~vkpg~sl~LsC~vSG-~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASG-YTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            34678999999999987 432  245565421                1 011  1235544432  4556799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDTAvYYCAr~~  100 (120)
T d1ad9b1          89 EDTAFYFCAREK  100 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEEEEcC
Confidence            999999997543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.59  E-value=0.01  Score=28.77  Aligned_cols=68  Identities=10%  Similarity=0.151  Sum_probs=45.3

Q ss_pred             eEEeecCCeEEEEEEEeecCC--CCeEEEeeCC----E----EcC-----------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         16 RIIETRGRRHTLIFFFHFAFC--RPQVIWYKET----L----KLD-----------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~----~----~l~-----------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      ...+..|+.+.|.|.+.| ..  .-.+.|++..    .    .+.           ...|+.+...  .+...|.+.++.
T Consensus        10 ~~~vkpg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASG-YSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CEEECTTCCEEEEEEECS-SCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEcC-CCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            345779999999999987 53  2346676521    0    010           1235555442  445579999999


Q ss_pred             CCCCEeeEEEEE
Q psy17205         73 FTDFGNYSCVAE   84 (106)
Q Consensus        73 ~~~~g~y~C~~~   84 (106)
                      .+|.+.|.|-..
T Consensus        89 ~eDtA~YYCAr~  100 (122)
T d1vgeh1          89 PEDTAVYYCARD  100 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999765

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.58  E-value=0.01  Score=28.67  Aligned_cols=67  Identities=9%  Similarity=0.142  Sum_probs=43.8

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC--E------EcCC-----------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET--L------KLDT-----------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~------~l~~-----------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++..  .      .+..           ..|+.+...  .+...|.+.+++.
T Consensus        10 ~~~kPg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1          10 ELVKPGASVKISCKASG-YISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcc-CcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            34568999999999987 532  346676531  0      0111           125544432  3455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1eapb1          89 EDSAVYFCKRS   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEEEe
Confidence            99999999653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.55  E-value=0.011  Score=28.86  Aligned_cols=68  Identities=12%  Similarity=0.100  Sum_probs=44.7

Q ss_pred             EEeecCCeEEEEEEEeecCCCC--eEEEeeC----------------CEE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP--QVIWYKE----------------TLK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~----------------~~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..--  .+.|++.                +.. ..  ...|+.+...  .+...|.+..+..
T Consensus        10 ~~~kpg~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASG-DTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            34678999999999987 4322  3456442                111 11  1235555543  4456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.54  E-value=0.011  Score=28.50  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=44.0

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ..  .-.+.|++.-  .      .+.           ...|+.+...  .+...|.+.++..
T Consensus        10 ~~~kPG~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKASG-YTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            44678999999999987 43  2346675531  0      011           1235555442  3455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1nlbh1          89 EDTATYFCARF   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.49  E-value=0.011  Score=28.23  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=43.5

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------Ec-C----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KL-D----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l-~----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.-  .      .+ .          ...|+.+...  .+...|.+.++..+
T Consensus        11 ~vkpG~sl~LsC~~SG-~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          11 SVKPGGSLKLSCAASG-FTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECc-cCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            4668999999999987 43  2345665521  0      01 1          1135555442  34567999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |.+.|.|-..
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.47  E-value=0.013  Score=28.61  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC-----EEc-----------------C--CCCCEEEEE--cCcEEEEEEc
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET-----LKL-----------------D--TTERRIMET--RGRRHTLVIR   69 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----~~l-----------------~--~~~~~~~~~--~~~~~~l~~~   69 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++..     .-+                 .  ...|+.+..  ..+...|.|.
T Consensus        11 lvkpg~sl~LsC~~SG-~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASG-DSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEES-SCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEcC-CCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            4568999999999987 43  2356787531     000                 0  012454443  2445679999


Q ss_pred             ccCCCCCEeeEEEEEc
Q psy17205         70 KVLFTDFGNYSCVAEN   85 (106)
Q Consensus        70 ~~~~~~~g~y~C~~~~   85 (106)
                      ++..+|.+.|.|-...
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999997653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.46  E-value=0.013  Score=28.46  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=42.9

Q ss_pred             EeecCCeEEEEEEEeecCCC----CeEEEeeC--CEE------c-CC---------CCCEEEEE--cCcEEEEEEcccCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR----PQVIWYKE--TLK------L-DT---------TERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~----p~~~w~~~--~~~------l-~~---------~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      .+..|+.+.|.|.+.| ..-    -.+.|++.  +..      + ..         ..++.+..  ..+...|.|..++.
T Consensus        11 ~vkpg~sv~LsC~~SG-~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSG-FSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             EECTTCCEEEEEEEES-SCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcC-CccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            4567999999999886 431    24678753  110      0 00         12444433  23456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|...|.|-..
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.44  E-value=0.013  Score=28.16  Aligned_cols=66  Identities=11%  Similarity=0.154  Sum_probs=39.7

Q ss_pred             cCCeEEEEEEEeecC-C---CCeEEEeeCCEEcCCCCC--EEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAF-C---RPQVIWYKETLKLDTTER--RIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p---~p~~~w~~~~~~l~~~~~--~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+..+.|.|.+.+ + |   ...+.|.+++..+.....  .....++...   .|.+..-.-.....|.|.+....
T Consensus        31 ~~~~~~L~C~v~g-f~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          31 ISLSPIVTCVVVD-VSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             TTSCCEEEEEEEE-ECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             cCCceEEEEEeec-ccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            4678899999987 5 3   247889999987654321  1222223222   34443333234557999999753

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.44  E-value=0.014  Score=28.71  Aligned_cols=67  Identities=12%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.-  .      .+.           ...|+.+...  .+...|.+.++..+
T Consensus        11 lvkPG~Sl~LsC~~SG-~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAASG-FTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEES-SCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEcC-CCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            4568999999999987 43  2346676431  0      011           1235555443  33456899999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|-...
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999998664

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0092  Score=27.85  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=37.6

Q ss_pred             eecCCeEEEEEEEeecCCC----CeEEEeeCCEEcCCCCCEEEEE--cCcE---EEEEEcccCCCCCEeeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAFCR----PQVIWYKETLKLDTTERRIMET--RGRR---HTLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~----p~~~w~~~~~~l~~~~~~~~~~--~~~~---~~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      +..++.++|.|.+.+ ..+    ..+.|.+++.............  ++..   ..|.+..-.-.....|.|.+....
T Consensus        13 l~~~~~~tL~C~v~g-f~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVD-LAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEE-SSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEe-eECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            335677899999998 533    2667888876544332111111  1211   234433332233567999998753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.39  E-value=0.011  Score=28.88  Aligned_cols=66  Identities=11%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC--CE------EcC-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE--TL------KLD-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+++.|.|.+.| ...  -.+.|++.  +.      .+.           ...++.+...  .+...|.+..+..
T Consensus        10 ~~~kpg~sl~lsC~~SG-~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASG-YRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            45678999999999987 432  24556542  10      011           1235555442  3456799999999


Q ss_pred             CCCEeeEEEE
Q psy17205         74 TDFGNYSCVA   83 (106)
Q Consensus        74 ~~~g~y~C~~   83 (106)
                      +|.+.|.|-.
T Consensus        89 eDtAvYYCAR   98 (127)
T d1n0xh1          89 ADTAVYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999999974

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.39  E-value=0.015  Score=28.35  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=43.9

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC----E----EcC-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET----L----KLD-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----~----~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|...| ...  -.+.|++..    .    .+.           ...|+.+...  .+...|.+..+..
T Consensus        10 ~~vkPg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASG-FTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEECC-ccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            34668999999999987 432  245665521    0    011           1235555443  3456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtavYYCAr~   99 (126)
T d1dfbh1          89 EDMALYYCVKG   99 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEec
Confidence            99999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.38  E-value=0.015  Score=28.37  Aligned_cols=66  Identities=14%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             EeecCCeEEEEEEEeecCCC---CeEEEeeC--CEE------c--------C--CCCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR---PQVIWYKE--TLK------L--------D--TTERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~---p~~~w~~~--~~~------l--------~--~~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.| ...   -.+.|++.  +..      +        .  ...|+.+..  ..+...|.+..+..+
T Consensus        11 lvkPg~sl~LsC~~SG-~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTG-YSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEES-SCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEec-ccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            3568999999999987 532   35778763  111      1        0  112333333  245567999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |.+.|.|-..
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999754

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.38  E-value=0.015  Score=28.27  Aligned_cols=67  Identities=10%  Similarity=0.078  Sum_probs=43.7

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC----------------CEEc-C--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE----------------TLKL-D--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~----------------~~~l-~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.                +... .  ...|+.+...  .+...|.+..+..
T Consensus        10 ~~~kpg~sl~LsC~~SG-~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSG-YSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             EEEETTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            45678999999999987 432  24556542                1100 0  1235544442  3456799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|...|.|-..
T Consensus        89 eDTA~YYCAR~   99 (124)
T d2b1hh1          89 SDTALYYCARL   99 (124)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeec
Confidence            99999999654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.34  E-value=0.015  Score=28.08  Aligned_cols=68  Identities=12%  Similarity=0.130  Sum_probs=43.6

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC--CEE------cC-------------CCCCEEEEEc--CcEEEEEEccc
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE--TLK------LD-------------TTERRIMETR--GRRHTLVIRKV   71 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~--~~~------l~-------------~~~~~~~~~~--~~~~~l~~~~~   71 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.  +..      +.             ...|+.+...  .+...|.+.++
T Consensus        10 ~~vkPG~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASG-FTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             EEECTTCEEEEEEEEES-SCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             ceECCCCCEEEEEEEcC-CCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            45678999999999987 432  24567652  100      10             0123333332  34556999999


Q ss_pred             CCCCCEeeEEEEEc
Q psy17205         72 LFTDFGNYSCVAEN   85 (106)
Q Consensus        72 ~~~~~g~y~C~~~~   85 (106)
                      ..+|.+.|.|-...
T Consensus        89 ~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          89 RVDDTAIYYCTRAG  102 (121)
T ss_dssp             CGGGCEECEEEEEE
T ss_pred             CCCcceEEEEeccC
Confidence            99999999997553

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.34  E-value=0.016  Score=28.20  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC-----------------EEc-C-CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET-----------------LKL-D-TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~-----------------~~l-~-~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.+ ..  .-.+.|++.-                 ... + ...|+.+...  .+...|.+..+..+
T Consensus        11 lvkpg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          11 LVKAGGSLILSCGVSN-FRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEETTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEeECC-ccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            4568999999999987 43  2345665421                 000 1 1235555442  45567999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |...|.|-...
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999997653

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.29  E-value=0.016  Score=27.91  Aligned_cols=68  Identities=12%  Similarity=0.155  Sum_probs=44.8

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC----------------EEc--C-CCCCEEEEE--cCcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET----------------LKL--D-TTERRIMET--RGRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----------------~~l--~-~~~~~~~~~--~~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.-                ...  + ...|+.+..  ..+...|.+..+..
T Consensus        10 ~~~kpg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1          10 EVKKPGATVKISCKASG-YTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            34578999999999987 442  246665431                110  0 113555544  24556799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|.+.|.|-...
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1rz7h1          89 EDTAVYYCAADP  100 (119)
T ss_dssp             GGCEEEEEEECT
T ss_pred             ccceEEEEeecC
Confidence            999999997653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.27  E-value=0.018  Score=28.08  Aligned_cols=67  Identities=10%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC----------------CEEc-C--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE----------------TLKL-D--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~----------------~~~l-~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.                +... .  ...|+.+...  .+...|.+.++..
T Consensus         9 ~~~kPg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTG-YIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             EEECTTCCEEEEEEEES-SCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcc-CCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            45678999999999988 432  24556542                1110 0  1235555432  4566799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|...|.|-..
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1lmka1          88 EDSAVYYCARG   98 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999753

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0041  Score=29.94  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeC--CEE------cCCC----------CCEEEEE--cCcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLK------LDTT----------ERRIMET--RGRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~------l~~~----------~~~~~~~--~~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.  ++.      +...          .|+.+..  ..+...|.+.++..+|
T Consensus        11 ~vkPg~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSG-FSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             BCCTTSEECCEEECCS-SCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             eECCCCCeEEEEEEeC-cccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            3557999999999987 43  235677653  111      1111          2333322  2344568889999999


Q ss_pred             CEeeEEEEEc
Q psy17205         76 FGNYSCVAEN   85 (106)
Q Consensus        76 ~g~y~C~~~~   85 (106)
                      .+.|.|-...
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.23  E-value=0.018  Score=27.83  Aligned_cols=67  Identities=15%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.+ ..  .-.+.|++..  .      .+.           ...|+.+..+  .+...|.+.++..+
T Consensus        11 ~vkpg~sl~LsC~~SG-~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASG-FTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcC-cCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            4568999999999987 43  2245665421  0      011           1135555442  34567999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|-...
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.17  E-value=0.02  Score=27.76  Aligned_cols=68  Identities=10%  Similarity=0.091  Sum_probs=44.4

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeCC----------------EE-cC--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKET----------------LK-LD--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.-                .. ..  ...|+.+...  .+...|.+..+..
T Consensus        10 ~~~kPG~sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSG-YIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             EEECTTCEEEEEEEEES-SCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            44678999999999987 432  245665421                10 00  1135555443  4456799999999


Q ss_pred             CCCEeeEEEEEc
Q psy17205         74 TDFGNYSCVAEN   85 (106)
Q Consensus        74 ~~~g~y~C~~~~   85 (106)
                      +|...|.|-...
T Consensus        89 eDTAvYYCAR~~  100 (124)
T d1yedb1          89 EDSAVYFCTRWG  100 (124)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEecccC
Confidence            999999997543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.15  E-value=0.02  Score=27.62  Aligned_cols=67  Identities=18%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeC--CEE------c-C------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLK------L-D------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~------l-~------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++.  +..      + .            ...|+.+...  .+...|.+.+++
T Consensus        11 ~vkpG~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSG-FTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             EECTTCCEEEEEEEES-SCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECC-ccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            4568999999999987 43  335667652  110      1 0            1125555442  445679999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|.+.|.|-...
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997643

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.0092  Score=27.86  Aligned_cols=66  Identities=9%  Similarity=0.175  Sum_probs=37.0

Q ss_pred             cCCeEEEEEEEeecC-CC---CeEEEeeCCEEcCCCC--CEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         21 RGRRHTLIFFFHFAF-CR---PQVIWYKETLKLDTTE--RRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p~---p~~~w~~~~~~l~~~~--~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      .+....+.|.+.+ + |.   ..+.|.+++..+....  ......++...   .|.+..-.-.....|.|.+....
T Consensus        15 ~~~t~~l~Clv~~-f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVD-ISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEE-ECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEe-eECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            4667789999987 4 33   4788999886654321  11111112222   34443333233456999998753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.07  E-value=0.022  Score=27.99  Aligned_cols=67  Identities=13%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             EEeecCCeEEEEEEEeecCCC--CeEEEeeC----------------CEEc-C--CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCR--PQVIWYKE----------------TLKL-D--TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~--p~~~w~~~----------------~~~l-~--~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.| ...  -.+.|++.                +... .  ...|+.+...  .+...|.+..+..
T Consensus         9 ~~vkPg~sl~LsC~~SG-~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASG-ATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             EEECTTCCEEEEEEESS-SCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            34678999999999987 432  24556542                1110 0  1235555443  3456789999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        88 eDtA~YYCAr~   98 (133)
T d1rzfh1          88 DDTAVYYCASN   98 (133)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEeeec
Confidence            99999999654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.07  E-value=0.023  Score=27.37  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--EE------cC----------CCCCEEEEEc--CcEEEEEEcccCCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--LK------LD----------TTERRIMETR--GRRHTLVIRKVLFTD   75 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~~------l~----------~~~~~~~~~~--~~~~~l~~~~~~~~~   75 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++..  ..      +.          ...|+.+...  .+...|.+..+..+|
T Consensus        11 ~vkPG~Sl~LsC~~SG-~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASG-FTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             EECTTCCEEEEEEEES-SCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECC-CcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            4568999999999987 53  2356676531  00      11          1124444432  345579999999999


Q ss_pred             CEeeEEEEEcC
Q psy17205         76 FGNYSCVAENS   86 (106)
Q Consensus        76 ~g~y~C~~~~~   86 (106)
                      .+.|.|-....
T Consensus        90 tA~YyCAr~~~  100 (118)
T d1lo4h1          90 TAIYYCARGTS  100 (118)
T ss_dssp             CEEEEEEEEET
T ss_pred             ceEEEecccCC
Confidence            99999976543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.06  E-value=0.023  Score=27.50  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeCC----E----EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKET----L----KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~----~----~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.+ ...  -.+.|++.-    .    .+.           ...|+.+...  .+...|.+.++..+
T Consensus        11 lvkPg~sl~LsC~~SG-~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASG-FTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcC-CCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            4568999999999987 432  245665521    0    010           1235554432  34567999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|-...
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.022  Score=26.66  Aligned_cols=70  Identities=7%  Similarity=0.026  Sum_probs=39.3

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCC--CEEEEEcCcE---EEEEEcccCCC--CCEeeEEEEEcCCCcce
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTE--RRIMETRGRR---HTLVIRKVLFT--DFGNYSCVAENSMGKTR   91 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~--~~~~~~~~~~---~~l~~~~~~~~--~~g~y~C~~~~~~~~~~   91 (106)
                      ....+.|.|.+.+ +-+  ..+.|.+++.......  ......++..   ..|++...+-.  ....|.|.+....+...
T Consensus        20 ~~~~~~l~Cl~~g-F~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          20 DTSSVAVGCLAQD-FLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             -CCSEEEEEEEEE-EBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCceEEEEEEec-ccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            4677899999998 543  4789998875443210  0011222322   23555544432  22479999998754443

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.02  Score=25.99  Aligned_cols=62  Identities=16%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             eecCCeEEEEEEEeecCCCCeEEEeeCCEEcCCCC--CEEEEEcCcEEEEEEcccCC-CCCEeeEEEEEcC
Q psy17205         19 ETRGRRHTLIFFFHFAFCRPQVIWYKETLKLDTTE--RRIMETRGRRHTLVIRKVLF-TDFGNYSCVAENS   86 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~~-~~~g~y~C~~~~~   86 (106)
                      ..-|..+.|.|+..   ....+.|.+++..+....  ........   .|.+..-+. .++|-|.|.+...
T Consensus         7 sISGTtV~LTCP~~---~~~~i~W~~n~~~~~~~~~~~~~~~~~~---~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           7 SISGTTVILTCPQY---PGSEILWQHNDKNIGGDEDDKNIGSDED---HLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EEETTEEEEECSSC---TTSCEEEEETTEEESSSCSCTTEEEETT---EEEETTCCHHHHCEEEEEEETTS
T ss_pred             EEeCCEEEEECCCC---CCCceeeeeccccccCCCcccccccccc---eEEecccCccccCceEEEEcCCC
Confidence            44699999999743   346799999998776431  11111111   456666555 5789999987643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.95  E-value=0.027  Score=27.24  Aligned_cols=67  Identities=13%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeCC--E------Ec--CC---------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKET--L------KL--DT---------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--~------~l--~~---------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|...| ..  .-.+.|++..  .      .+  ..         ..|+.+..+  .+...|.+.++..
T Consensus        10 ~lvkPg~sl~LsC~~SG-~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~   88 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASG-YAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP   88 (121)
T ss_dssp             EEEETTCCEEEEEEEES-CSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcC-CCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence            34668999999999987 43  2356676531  0      01  00         125555442  3455799999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtAvYYCAr~   99 (121)
T d2p49b1          89 EDTATYYCAAG   99 (121)
T ss_dssp             GGCEEEEEEES
T ss_pred             cceeEEeeecc
Confidence            99999999764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.86  E-value=0.03  Score=27.09  Aligned_cols=66  Identities=12%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             ecCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCE----EEE----EcCc---EEEEEEcccCCCCCE-eeEEEEEc
Q psy17205         20 TRGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERR----IME----TRGR---RHTLVIRKVLFTDFG-NYSCVAEN   85 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~----~~~----~~~~---~~~l~~~~~~~~~~g-~y~C~~~~   85 (106)
                      ..+..++|.|.+.+ +.+  ..+.|++++..+......    ...    ..+.   ...|.+....-.+.| .|.|.+..
T Consensus        18 ~~~~~~tL~C~v~g-f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          18 SHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             ccCCcEEEEEEEEe-ccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            34677899999998 643  368899998776532100    000    0011   224666655444544 69999975


Q ss_pred             C
Q psy17205         86 S   86 (106)
Q Consensus        86 ~   86 (106)
                      .
T Consensus        97 ~   97 (127)
T d1ogae2          97 Y   97 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.82  E-value=0.033  Score=27.25  Aligned_cols=67  Identities=7%  Similarity=0.062  Sum_probs=43.3

Q ss_pred             EEeecCCeEEEEEEEeecCC--CCeEEEeeC--CEE------cC-C----------CCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFC--RPQVIWYKE--TLK------LD-T----------TERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p--~p~~~w~~~--~~~------l~-~----------~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      ..+..|+.+.|.|.+.+ ..  .-.+.|++.  +..      +. .          ..|+.+...  .+...|.+.+++.
T Consensus        10 ~~~kPg~sl~LsC~~SG-~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASG-GTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             EEECTTCCEEEEEECCS-SCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcC-CCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            34678999999999887 43  235667653  100      10 0          124444432  3455688999999


Q ss_pred             CCCEeeEEEEE
Q psy17205         74 TDFGNYSCVAE   84 (106)
Q Consensus        74 ~~~g~y~C~~~   84 (106)
                      +|.+.|.|-..
T Consensus        89 eDtA~YYCAr~   99 (130)
T d1rzga1          89 EDTAVFYCASP   99 (130)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CccEEEEEEEe
Confidence            99999999754

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.027  Score=26.03  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=27.7

Q ss_pred             EEEEcccCCCCCEeeEEEEEcCCCcce--EEEEEEE
Q psy17205         65 TLVIRKVLFTDFGNYSCVAENSMGKTR--QYLELSG   98 (106)
Q Consensus        65 ~l~~~~~~~~~~g~y~C~~~~~~~~~~--~~~~l~~   98 (106)
                      +|+|..+...|.|.|.-.+.+.-|...  ..+.|.+
T Consensus        64 tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          64 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            799999999999999999998877654  3555554

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.71  E-value=0.037  Score=27.10  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=43.2

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeCC------------------EE-cC--CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKET------------------LK-LD--TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~------------------~~-l~--~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+..|+.+.|.|.+.+ ...  -.+.|++.-                  .. ..  ...|+.+...  .+...|.+.++.
T Consensus        11 ~vkpg~sl~LsC~~SG-~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASG-FTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECC-CCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            4568999999999987 432  245565421                  00 00  1235555443  345679999999


Q ss_pred             CCCCEeeEEEEE
Q psy17205         73 FTDFGNYSCVAE   84 (106)
Q Consensus        73 ~~~~g~y~C~~~   84 (106)
                      .+|.+.|.|-..
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999754

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.68  E-value=0.037  Score=26.78  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=44.3

Q ss_pred             EeecCCeEEEEEEEeecCCC--CeEEEeeCC--E------EcC-------------CCCCEEEEEc--CcEEEEEEcccC
Q psy17205         18 IETRGRRHTLIFFFHFAFCR--PQVIWYKET--L------KLD-------------TTERRIMETR--GRRHTLVIRKVL   72 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p~--p~~~w~~~~--~------~l~-------------~~~~~~~~~~--~~~~~l~~~~~~   72 (106)
                      .+..|+.+.|.|.+.+ ...  -.+.|++..  .      .+.             ...|+.+...  .+...|.+..+.
T Consensus        11 ~vkpg~sl~LsC~~SG-~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSG-FTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcC-CCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            4568999999999987 432  246776531  0      010             0135555432  345679999999


Q ss_pred             CCCCEeeEEEEEc
Q psy17205         73 FTDFGNYSCVAEN   85 (106)
Q Consensus        73 ~~~~g~y~C~~~~   85 (106)
                      .+|.+.|.|....
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999998643

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.58  E-value=0.023  Score=27.27  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=42.8

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC--------EEcC-C----------CCCEEEEE--cCcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET--------LKLD-T----------TERRIMET--RGRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~--------~~l~-~----------~~~~~~~~--~~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.+ ..  .-.+.|++.-        ..+. .          ..|+.+..  ..+...|.+.++..+
T Consensus        11 ~vkpg~sl~LsC~~SG-~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASG-YIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             EECTTSCEEEEEECCH-HHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECC-CCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            4678999999999986 32  2345565521        0111 1          12444443  244567999999999


Q ss_pred             CCEeeEEEEE
Q psy17205         75 DFGNYSCVAE   84 (106)
Q Consensus        75 ~~g~y~C~~~   84 (106)
                      |.+.|.|-..
T Consensus        90 DTAvYYCAr~   99 (117)
T d1b2wh1          90 DTAVYYCARG   99 (117)
T ss_dssp             GCEEEECCEE
T ss_pred             cceEEEEccc
Confidence            9999999654

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.036  Score=25.76  Aligned_cols=67  Identities=12%  Similarity=0.195  Sum_probs=38.7

Q ss_pred             ecCCeEEEEEEEeecC-CC---CeEEEeeCCEEcCCCC--CEEEEEcCcEE---EEEEcccCCCCCEeeEEEEEcCC
Q psy17205         20 TRGRRHTLIFFFHFAF-CR---PQVIWYKETLKLDTTE--RRIMETRGRRH---TLVIRKVLFTDFGNYSCVAENSM   87 (106)
Q Consensus        20 ~~g~~~~~~c~~~~~~-p~---p~~~w~~~~~~l~~~~--~~~~~~~~~~~---~l~~~~~~~~~~g~y~C~~~~~~   87 (106)
                      ..++.+.|.|.+.+ + |.   ..+.|.+++..+....  ......++...   .|.+..-.-.....|.|.+....
T Consensus        16 ~~~~~~~L~C~~~g-f~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          16 MISRTPEVTCVVVD-VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             CTTSCCEEEEEEEE-ECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEE-EeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            35778899999987 5 32   4677999887665431  11111122222   34444333234457999998754

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.51  E-value=0.045  Score=26.66  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=43.6

Q ss_pred             EeecCCeEEEEEEEeecCC--CCeEEEeeCC----E----EcC-----------CCCCEEEEEc--CcEEEEEEcccCCC
Q psy17205         18 IETRGRRHTLIFFFHFAFC--RPQVIWYKET----L----KLD-----------TTERRIMETR--GRRHTLVIRKVLFT   74 (106)
Q Consensus        18 ~~~~g~~~~~~c~~~~~~p--~p~~~w~~~~----~----~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~~   74 (106)
                      .+..|+.+.|.|.+.| ..  .-.+.|++..    .    .+.           ...|+.+...  .+...|.+.++..+
T Consensus        11 ~~kpg~sl~LsC~~SG-~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSG-FIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECC-CCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            4568999999999987 43  2345565421    0    011           1135544443  34567999999999


Q ss_pred             CCEeeEEEEEc
Q psy17205         75 DFGNYSCVAEN   85 (106)
Q Consensus        75 ~~g~y~C~~~~   85 (106)
                      |.+.|.|-...
T Consensus        90 DTA~YYCAr~~  100 (127)
T d2fb4h1          90 DTGVYFCARDG  100 (127)
T ss_dssp             GCEEEEEEEEC
T ss_pred             ceeEEEEEEec
Confidence            99999997654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.34  E-value=0.05  Score=26.13  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             EEeecCCeEEEEEEEeecCCCC--eEEEeeCC--E------EcC-----------CCCCEEEEEc--CcEEEEEEcccCC
Q psy17205         17 IIETRGRRHTLIFFFHFAFCRP--QVIWYKET--L------KLD-----------TTERRIMETR--GRRHTLVIRKVLF   73 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~~~p~p--~~~w~~~~--~------~l~-----------~~~~~~~~~~--~~~~~l~~~~~~~   73 (106)
                      -.+..|+.+.|.|.+.| ..-.  .+.|++.-  .      .+.           ...|+.+...  .+...|.+.++..
T Consensus        10 ~~vkpg~sl~LsC~~SG-~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASG-FDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECC-ccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            45678999999999988 5322  45665421  0      011           1235555442  3455699999999


Q ss_pred             CCCEeeEEEEEcC
Q psy17205         74 TDFGNYSCVAENS   86 (106)
Q Consensus        74 ~~~g~y~C~~~~~   86 (106)
                      +|.+.|.|-....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999986553

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0063  Score=27.45  Aligned_cols=48  Identities=25%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEE-cCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLK-LDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      +..+.+.|...-   .-.|.|.+++.. +...        +.  .+++.--...++|+|+|+
T Consensus        21 ~~~V~L~C~t~e---E~~I~W~kd~~se~~~~--------Gn--tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTPE---EDGITWTLDQSSEVLGS--------GK--TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSSC---CSSCEEEETTCCCCCEE--------SS--EEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCCc---ccccEEeeCCccccccC--------CC--EEEEEEEeccCCcceeEe
Confidence            456788884322   236899998643 1111        11  233333334588999997

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.22  E-value=0.0022  Score=30.54  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=33.6

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCC---CEeeEEEEEcC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTD---FGNYSCVAENS   86 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~---~g~y~C~~~~~   86 (106)
                      .+..+.|.|.+.+ +-+  ..+.|.+++.............++.........+...+   ...|.|.+...
T Consensus        26 ~~~~~tL~C~v~g-f~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~   95 (111)
T d1pfca_          26 SKKKVSLTCMITG-FYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHE   95 (111)
T ss_dssp             CTTSCCEEEEEES-CCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEET
T ss_pred             cCCceEEEEEEEe-eECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            3567889999998 643  47889877521000000000011222223333344433   44699999875

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.033  Score=25.87  Aligned_cols=66  Identities=12%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             cCCeEEEEEEEeecCCC--CeEEEeeCCEEcCCC-CCEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCC
Q psy17205         21 RGRRHTLIFFFHFAFCR--PQVIWYKETLKLDTT-ERRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMG   88 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~p~--p~~~w~~~~~~l~~~-~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~   88 (106)
                      .+..+.|.|.+.+ +.+  ..+.|.+++...... .......++.   ...|.+..-.. ....|.|.+.....
T Consensus        19 ~~~~~tl~Cl~~~-f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          19 SGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPS   90 (103)
T ss_dssp             ETTEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGG
T ss_pred             CCCeEEEEEEEEe-EeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCC
Confidence            3567899999998 643  378997765321100 0000111111   12455554433 23569999987543

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.0031  Score=29.48  Aligned_cols=68  Identities=10%  Similarity=0.005  Sum_probs=35.7

Q ss_pred             eecCCeEEEEEEEeecCC-C--CeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCC---CCEeeEEEEEcCC
Q psy17205         19 ETRGRRHTLIFFFHFAFC-R--PQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFT---DFGNYSCVAENSM   87 (106)
Q Consensus        19 ~~~g~~~~~~c~~~~~~p-~--p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~---~~g~y~C~~~~~~   87 (106)
                      +..++.+.|.|.+.+ +. +  ..+.|.+++.............++.........+...   ....|.|.+....
T Consensus        15 ~~~~~~~tL~C~v~~-f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTG-LRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETT-CCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeC-CCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            345778999999988 63 2  3689987763221100000111122222222333333   2458999998653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.85  E-value=0.12  Score=23.83  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=37.8

Q ss_pred             cCCeEEEEEEEeecC-CCC--eEEEeeCCEEcCCCC-CEEEEEcCc---EEEEEEcccCCCCCEeeEEEEEcCCCc
Q psy17205         21 RGRRHTLIFFFHFAF-CRP--QVIWYKETLKLDTTE-RRIMETRGR---RHTLVIRKVLFTDFGNYSCVAENSMGK   89 (106)
Q Consensus        21 ~g~~~~~~c~~~~~~-p~p--~~~w~~~~~~l~~~~-~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~   89 (106)
                      .++.+.|.|.+.+ + |..  .+.|.+++..+.... ......++.   ...|.+..........|.|.+......
T Consensus        18 ~~~~v~L~Clv~g-F~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHD-YFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEE-EBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEc-ccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            4678999999999 7 332  456766654332110 001111121   224666665544556799999875433

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.03  E-value=0.35  Score=22.40  Aligned_cols=64  Identities=5%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             eEEeecCCeEEEEEEEee------cCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEE
Q psy17205         16 RIIETRGRRHTLIFFFHF------AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCV   82 (106)
Q Consensus        16 ~~~~~~g~~~~~~c~~~~------~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   82 (106)
                      .-.+..|+.++..|....      +.-...+.|..++..++.. .+.... .+..++++.++.....- -.|.
T Consensus        12 ~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~-qy~~ln-~T~~Svtl~~l~~~~a~-L~C~   81 (100)
T d1i1ra1          12 SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIIN-RTASSVTFTDIASLNIQ-LTCN   81 (100)
T ss_dssp             SCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEE-TTEEEEEECSCCCSEEE-EEEE
T ss_pred             CCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCch-heEccC-CcEEEEEEccccCCcce-eEEE
Confidence            345678999999999963      0234689999999998874 344444 33456888888865443 3453

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.35  E-value=0.45  Score=21.08  Aligned_cols=24  Identities=13%  Similarity=0.193  Sum_probs=17.1

Q ss_pred             CCeEEEEEEEeecCCCCeEEEeeCCEEc
Q psy17205         22 GRRHTLIFFFHFAFCRPQVIWYKETLKL   49 (106)
Q Consensus        22 g~~~~~~c~~~~~~p~p~~~w~~~~~~l   49 (106)
                      ...+.|.|.    ....++.|++++..+
T Consensus        17 dg~V~L~Cn----~~~k~i~W~kdg~~i   40 (81)
T d1sy6a1          17 DGSVLLTCD----AEAKNITWFKDGKMI   40 (81)
T ss_dssp             SSEEEEEEC----SCSSEEEEEETTEEE
T ss_pred             CCeEEEEeC----CCCcEEEEecCCeEe
Confidence            446788894    345589999998643

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.35  E-value=0.67  Score=20.72  Aligned_cols=51  Identities=14%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             CeEEEEEEEeecCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         23 RRHTLIFFFHFAFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        23 ~~~~~~c~~~~~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+.|.|..    ....+.|++++..+......       ..++-+-..-.--.|.|.|...
T Consensus        23 GsV~L~Cn~----~~k~i~W~kdg~~i~~~~~~-------~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          23 GSVLLTCGL----TDKTIKWLKDGSIISPLNAT-------KNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             CEEEEECSS----SCSCEEEEETTEECCCSSCC-------SSCCEEEETTSCCEEEEEEEES
T ss_pred             CeEEEEeCC----CCcEEEEecCCceecccccc-------cceeecCCcccCCCcceEcCCC
Confidence            367888833    44589999998776532100       0012222222234599999644

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=0.94  Score=20.62  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=38.9

Q ss_pred             EEeecCCeEEEEEEEee----cCCCCeEEEeeCCEEcCCCCCEEEEEcCcEEEEEEcccCCCCCEeeEEEEE
Q psy17205         17 IIETRGRRHTLIFFFHF----AFCRPQVIWYKETLKLDTTERRIMETRGRRHTLVIRKVLFTDFGNYSCVAE   84 (106)
Q Consensus        17 ~~~~~g~~~~~~c~~~~----~~p~p~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   84 (106)
                      ..+..|+.++-.|....    ....+.+.|..++..++.+.......+...++.++.++..... .-.|.+.
T Consensus         9 pVV~lGsp~tAsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~rq~~~~~~~~~SsVt~p~l~~~~a-~LtC~v~   79 (94)
T d2d9qb1           9 PIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA-FLSCSLN   79 (94)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEE-EEEEEEE
T ss_pred             ceEeCCCCEEEEEEECccccCcCCcceEEEEECCEECCCcceeEEecCcEEEEEEecccccCcc-cEEEEEE
Confidence            35668999999997754    1234689998887776542111111112234678888776443 3445443