Psyllid ID: psy17207

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITEN
Secondary Structure (PSIPRED)
ccccccccEEEEEcccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEccccccEEEcccccccccEEEEEEEEcccccccEEEEEEEEcccccccccEEEEEccEEEEEcEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccEEEEEEEccHHHcccEEEEEEcccccEEEEEEEEccccccEEEccccccccccEEEEEEEEcccccEEEEEEEEEccccccccccccccccccccccEcccccccc
Coil and Loop (DISEMBL)
MRLETTERRIMETRGSRHTLMIRKVVAsdfgnysceatnpmgkhraylelsgkpnpaifrshpqgrlpnsynitwmvssytpleefkikyrkipgnepspmsnqltgtnqyqNRRLVRKITEN
Flexible Loop (DISEMBL)
mrletterrimetrgsrhtlmiRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPgnepspmsnqltgtnqyqnrrlvrkiten
Low Complexity Region (SEG)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITEN
Disordered region (IsUnstruct)
******************TLMIRKVVASDFGNYSCEATNPMGKHRAYLE****************RLPNSYNITWMVSSYTPLEEFKIKYRK*******************************
Disordered Region (DISOPRED)
*RL*TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN*************NSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRL*******
Disordered Region (DISEMBL)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITEN
Disordered Region (DISPRO)
****TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVR*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITEN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
242018223	500	limbic system-associated membrane protei	0.756	0.186	0.709	2e-33
328701973	535	PREDICTED: neural cell adhesion molecule	0.878	0.201	0.598	4e-31
328701975	551	PREDICTED: neural cell adhesion molecule	0.878	0.196	0.598	4e-31
242021179	454	limbic system-associated membrane protei	0.788	0.213	0.656	5e-31
270003594	240	hypothetical protein TcasGA2_TC002850 [T	0.845	0.433	0.554	8e-29
91079206	551	PREDICTED: similar to CG34353 CG34353-PA	0.845	0.188	0.554	1e-28
195352945	271	GM16324 [Drosophila sechellia] gi|194127	0.764	0.346	0.617	5e-28
92109994	518	IP03437p [Drosophila melanogaster]	0.788	0.187	0.602	2e-27
161078695	566	CG34353, isoform A [Drosophila melanogas	0.788	0.171	0.602	2e-27
108743667	413	IP03330p [Drosophila melanogaster]	0.764	0.227	0.606	3e-27

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +RL+TTERR ME RGSRHTL+IRKV ASDFGNYSC A NP+GK R YL+LSGKPN  +FR
Sbjct: 260 LRLDTTERRSMEVRGSRHTLIIRKVQASDFGNYSCVADNPLGKMRQYLQLSGKPNQVVFR 319

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI 93
           S P GR  +SYNITW V+SYTP+EEFK+ +RK+
Sbjct: 320 SEPMGRYKDSYNITWAVNSYTPIEEFKLYFRKL 352

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701973|ref|XP_001945384.2| PREDICTED: neural cell adhesion molecule 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 4/112 (3%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           ++L+T ERRI E RGSRHTL++RKV ASDFGNYSC A N +GK RAY+ELSGKPNP    
Sbjct: 300 LKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSGKPNPVKIN 359

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQ 112
           S+  GR  N+YNI+W V SYTP+EEFK+ YRK+P  + SP   +     QYQ
Sbjct: 360 SNKNGRHQNNYNISWSVDSYTPIEEFKLFYRKVPLPDESPADTR----TQYQ 407

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701975|ref|XP_003241763.1| PREDICTED: neural cell adhesion molecule 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 4/112 (3%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           ++L+T ERRI E RGSRHTL++RKV ASDFGNYSC A N +GK RAY+ELSGKPNP    
Sbjct: 300 LKLDTNERRITEVRGSRHTLIVRKVQASDFGNYSCVADNVVGKSRAYVELSGKPNPVKIN 359

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQ 112
           S+  GR  N+YNI+W V SYTP+EEFK+ YRK+P  + SP   +     QYQ
Sbjct: 360 SNKNGRHQNNYNISWSVDSYTPIEEFKLFYRKVPLPDESPADTR----TQYQ 407

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 80/99 (80%), Gaps = 2/99 (2%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +RL+TTERR  ETRGSRHTL+IRKV ASDFGNYSC A N +GK R YL+LSGKPN   F 
Sbjct: 245 LRLDTTERRSFETRGSRHTLIIRKVQASDFGNYSCVADNTLGKMRQYLQLSGKPNQVAFN 304

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP--GNE 97
           S+P  R  +SYNI+W+V+SYTP+EEFK+ +R+IP  GN+
Sbjct: 305 SNPVSRYHDSYNISWIVNSYTPIEEFKLFFRRIPETGNQ 343

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003594|gb|EFA00042.1| hypothetical protein TcasGA2_TC002850 [Tribolium castaneum]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTERRIME+RGSRHTL+IRKV  SDFGNY+C A N +GK R  ++L+GKPNPA F 
Sbjct: 1   MQLDTTERRIMESRGSRHTLLIRKVHRSDFGNYTCVADNQLGKTRKSVQLTGKPNPAKFN 60

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN------EPSPMSNQ 104
           S  +G   +SYNI+W V SY+P+EE+K+ +R++P N       P P+ +Q
Sbjct: 61  SATRGNWRDSYNISWAVESYSPIEEYKLLFRELPDNPGSDDGHPQPLHHQ 110

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079206|ref|XP_969693.1| PREDICTED: similar to CG34353 CG34353-PA [Tribolium castaneum]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 6/110 (5%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTERRIME+RGSRHTL+IRKV  SDFGNY+C A N +GK R  ++L+GKPNPA F 
Sbjct: 312 MQLDTTERRIMESRGSRHTLLIRKVHRSDFGNYTCVADNQLGKTRKSVQLTGKPNPAKFN 371

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGN------EPSPMSNQ 104
           S  +G   +SYNI+W V SY+P+EE+K+ +R++P N       P P+ +Q
Sbjct: 372 SATRGNWRDSYNISWAVESYSPIEEYKLLFRELPDNPGSDDGHPQPLHHQ 421

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195352945|ref|XP_002042971.1| GM16324 [Drosophila sechellia] gi|194127036|gb|EDW49079.1| GM16324 [Drosophila sechellia]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
          M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 1  MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 60

Query: 61 SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP 94
          S P  +  + YNI+W V S++P+EE+K+ YRK+P
Sbjct: 61 SPPISQYKDRYNISWAVDSHSPIEEYKLSYRKLP 94

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|92109994|gb|ABE73321.1| IP03437p [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 263 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 322

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-GNE 97
           S P  +  + YNI+W V S++P+EE+K+ +RK+P G+E
Sbjct: 323 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHE 360

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078695|ref|NP_001097949.1| CG34353, isoform A [Drosophila melanogaster] gi|386766647|ref|NP_001247342.1| CG34353, isoform B [Drosophila melanogaster] gi|158030420|gb|ABW08787.1| CG34353, isoform A [Drosophila melanogaster] gi|383292993|gb|AFH06659.1| CG34353, isoform B [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 311 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 370

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP-GNE 97
           S P  +  + YNI+W V S++P+EE+K+ +RK+P G+E
Sbjct: 371 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLPQGHE 408

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108743667|gb|ABG02142.1| IP03330p [Drosophila melanogaster]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           M+L+TTER IMETRGSRHTL+IRKV   DFGNYSC A N +GK R  L+LSGKPN A+F 
Sbjct: 145 MQLDTTERHIMETRGSRHTLIIRKVHPQDFGNYSCVAENQLGKARKTLQLSGKPNVAVFN 204

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIP 94
           S P  +  + YNI+W V S++P+EE+K+ +RK+P
Sbjct: 205 SPPISQYKDRYNISWAVDSHSPIEEYKLSFRKLP 238

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.772	0.174	0.526	1.7e-23
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.772	0.203	0.442	8.5e-18
FB|FBgn0025878	500	wrapper "wrapper" [Drosophila	0.650	0.16	0.362	5.8e-12
UNIPROTKB|G3N022	3281	SPEG "Uncharacterized protein"	0.422	0.015	0.365	9.8e-05
ZFIN|ZDB-GENE-010822-1	840	ncam2 "neural cell adhesion mo	0.430	0.063	0.333	0.00012
UNIPROTKB|F1Q2N4	1622	ROBO1 "Uncharacterized protein	0.317	0.024	0.487	0.00024
MGI|MGI:109282	3262	Speg "SPEG complex locus" [Mus	0.422	0.015	0.346	0.00031
UNIPROTKB|F6X4X4	3272	SPEG "Uncharacterized protein"	0.422	0.015	0.346	0.0004
UNIPROTKB|E2R2D8	3274	SPEG "Uncharacterized protein"	0.422	0.015	0.346	0.0004
MGI|MGI:107935	1091	Lrig1 "leucine-rich repeats an	0.422	0.047	0.407	0.00068

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 50/95 (52%), Positives = 67/95 (70%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
             +++T+RRIM TR +RH L IR +   DFGNYSC A N +G+ R Y+ELSG+P  A F S 
Sbjct:   328 IQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELSGRPGAAEFYSP 387

Query:    63 PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
               GR P+SYN+TW + SY PLEE ++ YR++  NE
Sbjct:   388 KWGRSPDSYNLTWKIDSYPPLEEVRLLYRRVQMNE 422

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 42/95 (44%), Positives = 61/95 (64%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
             L+ T+RR M  R  R++L+IR    +DFGNYSC A N +G+ + Y+E+SG+P PA F S 
Sbjct:   265 LDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADNALGRTKKYIEVSGRPGPADFISP 324

Query:    63 PQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNE 97
                   + YN+TW + S  PL+E K+ YR++  NE
Sbjct:   325 ALSGFLDHYNLTWTIESIPPLDEIKLLYRRLLMNE 359

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0025878 wrapper "wrapper" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 29/80 (36%), Positives = 48/80 (60%)

Query:    17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWM 76
             RH L+++ V  +D G Y C A+N +      +EL+G+P P +F+ +P  +   S+ + W 
Sbjct:   289 RHMLVVKSVRNADMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQ 348

Query:    77 VSSYTPLEEFKIKYRKIPGN 96
               S  P+ EFK+K+R+IP N
Sbjct:   349 TESLLPIMEFKLKFRQIPSN 368

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0042063 "gliogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IEP

GO:0007409 "axonogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|G3N022 SPEG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 99 (39.9 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
             L +  R ++   G RHTL++R+  A+D G+Y+  ATN +G+ R    L+ +P
Sbjct:   763 LRSDGRLLIRAEGERHTLLLREARAADAGSYAATATNELGQARCAATLAVRP 814

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

ZFIN|ZDB-GENE-010822-1 ncam2 "neural cell adhesion molecule 2" [Danio rerio (taxid:7955)]

 Score = 93 (37.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 19/57 (33%), Positives = 36/57 (63%)

Query:     1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN 55
             ++L+ +ER +M  RG+  TL +R +   D G+Y+C A+N  G+  H  +L++  +P+
Sbjct:   251 VQLQESERYVMRARGT--TLTVRNIQQDDGGSYTCRASNKAGEVEHELFLKVFVQPH 305

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1Q2N4 ROBO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 91 (37.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
 Identities = 19/39 (48%), Positives = 25/39 (64%)

Query:    18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
             HTL IRKV+A D G+Y+C A N +GK  A   L+ +  P
Sbjct:   284 HTLKIRKVMAGDMGSYTCVAENMVGKAEASATLTVQEPP 322

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:109282 Speg "SPEG complex locus" [Mus musculus (taxid:10090)]

 Score = 94 (38.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
             L +  R ++   G RHTL++R+  A+D G+Y+  ATN +G+      L+ +P
Sbjct:   767 LHSEGRLLIRAEGERHTLLLREAQAADAGSYTATATNELGQATCASSLAVRP 818

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0055013 "cardiac muscle cell development" evidence=IMP

GO:0060541 "respiratory system development" evidence=IMP

GO:0072358 "cardiovascular system development" evidence=IMP

UNIPROTKB|F6X4X4 SPEG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 93 (37.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
             L +  R ++   G RHTL++R+  A+D G+Y+  ATN +G+      L+ +P
Sbjct:   762 LRSDGRLLIRAEGERHTLLLREARAADAGSYTATATNELGQASCAAALAVRP 813

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E2R2D8 SPEG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 93 (37.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
             L +  R ++   G RHTL++R+  A+D G+Y+  ATN +G+      L+ +P
Sbjct:   764 LRSDGRLLIRAEGERHTLLLREARAADAGSYTATATNELGQASCAAALAVRP 815

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:107935 Lrig1 "leucine-rich repeats and immunoglobulin-like domains 1" [Mus musculus (taxid:10090)]

 Score = 99 (39.9 bits), Expect = 0.00068, P = 0.00068
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query:     3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
             L  TER    T G++  L+++ V+  D G Y+CE +NP+G  RA+ +LS  P P
Sbjct:   735 LSLTERHHF-TPGNQ-LLVVQNVMIDDAGRYTCEMSNPLGTERAHSQLSILPTP 786


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 22  0.39    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.23u 0.10s 13.33t   Elapsed:  00:00:05
  Total cpu time:  13.23u 0.10s 13.33t   Elapsed:  00:00:05
  Start:  Thu Aug 15 16:02:56 2013   End:  Thu Aug 15 16:03:01 2013

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-05
smart00409	85	smart00409, IG, Immunoglobulin	3e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-04
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-04
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	4e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          L +++R  +   G  +TL I  V   D G Y+C ATN  G+  A  EL
Sbjct: 41 LRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAEL 88

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          L  + R  +   GS  TL I  V   D G Y+C ATN  G   +   L+
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          L  + R  +   GS  TL I  V   D G Y+C ATN  G   +   L+
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 18/46 (39%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
           T  R    T     TL I  V   D G Y+C A+N  G   A + 
Sbjct: 29 LTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 19/29 (65%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           +L IR V A D G+Y+CEA N +GK  A
Sbjct: 35 KSLKIRNVTAGDEGSYTCEAENMVGKIEA 63

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          L+ + R  +ET  S  +L+I+    SD G Y+    NP G+  A + +
Sbjct: 25 LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH 44
          R  + + G   TL IR V  SD G Y+CEA N  G  
Sbjct: 32 RVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHR 45
          TL I  V   D G Y C A+N +G  R
Sbjct: 37 TLKIDNVSEEDDGEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.37
KOG3513|consensus	1051		99.3
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.25
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.22
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.17
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.14
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.14
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.13
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.11
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.1
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.09
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.09
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.08
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.07
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.05
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.05
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.05
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.04
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.03
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.03
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.03
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.02
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.01
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.01
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.01
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.01
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.98
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.95
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.94
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.93
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.93
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.92
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.9
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.89
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.89
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.88
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.86
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.86
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.86
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.85
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.85
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.84
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.83
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.83
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.83
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.82
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.82
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.82
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.81
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.8
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.8
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.8
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.77
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.77
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.76
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.76
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.76
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.75
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.7
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.7
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.67
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.64
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.64
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.62
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.6
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.59
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.58
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.53
KOG3513|consensus	1051		98.52
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.5
PHA02785	326	IL-beta-binding protein; Provisional	98.49
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.48
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.48
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.48
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.47
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.45
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.44
PHA02826	227	IL-1 receptor-like protein; Provisional	98.43
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.4
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.36
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.36
KOG4221|consensus	1381		98.33
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.32
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.31
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.3
smart00409	86	IG Immunoglobulin.	98.29
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.29
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.28
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.28
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.27
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.27
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.26
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.24
KOG4194|consensus	873		98.18
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.17
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.16
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.13
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.12
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.12
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.09
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.09
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.08
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.08
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.08
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.07
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.03
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.99
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.96
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.95
KOG4222|consensus	1281		97.93
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.9
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.88
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.82
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.82
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.8
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.79
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.76
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.74
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.74
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.7
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.69
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.68
PHA02785	326	IL-beta-binding protein; Provisional	97.65
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.63
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.63
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.63
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.61
PHA02826	227	IL-1 receptor-like protein; Provisional	97.61
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.61
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.6
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.6
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.52
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.51
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.5
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.5
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.48
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.47
PHA02633	63	hypothetical protein; Provisional	97.45
smart00406	81	IGv Immunoglobulin V-Type.	97.42
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.38
KOG4221|consensus	1381		97.38
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.35
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.34
KOG4222|consensus	1281		97.27
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.2
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.16
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.14
KOG4194|consensus	873		97.1
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.04
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.94
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.77
PHA03376	221	BARF1; Provisional	96.55
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.52
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.5
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.36
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.36
PHA02982	251	hypothetical protein; Provisional	96.21
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.11
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.03
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	94.73
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	93.71
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	93.63
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.78
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.27
KOG3515|consensus	741		91.66
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	90.09
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	89.99
KOG1480|consensus	909		89.77
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	87.5
PHA03042	286	CD47-like protein; Provisional	86.7
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	85.88
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	85.74
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	83.1
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	81.58
KOG3515|consensus	741		81.22
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	81.09
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	80.96
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	80.45
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	80.37

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.37  E-value=2.5e-12  Score=82.84  Aligned_cols=56  Identities=25%  Similarity=0.437  Sum_probs=48.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCc
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~   57 (123)
                      +|..++|+.+......+.|+|.++..+|+|.|+|.|+|.+|.+.+++.|.  ++|.||
T Consensus        40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            56778899888777789999999999999999999999999999876665  577765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG3513|consensus

Probab=99.30  E-value=1.9e-11  Score=104.17  Aligned_cols=42  Identities=38%  Similarity=0.536  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      +..++||.+..+|   +|.|.+++++|+|.|+|+|+|.+|+++++
T Consensus       467 ~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~  508 (1051)
T KOG3513|consen  467 LLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAEST  508 (1051)
T ss_pred             cccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceE
Confidence            4567888887544   89999999999999999999999999874

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.25  E-value=4e-11  Score=72.78  Aligned_cols=50  Identities=30%  Similarity=0.470  Sum_probs=44.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..++|+.+...+..+.|.|.++...|+|.|+|.|+|.+|.+..++.|.
T Consensus        24 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748          24 PLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             EcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            35567888887777788999999999999999999999999999998875

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.22  E-value=6.9e-11  Score=74.55  Aligned_cols=51  Identities=33%  Similarity=0.526  Sum_probs=40.5

Q ss_pred             CCEEEEE--c--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCc
Q psy17207          7 ERRIMET--R--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPA   57 (123)
Q Consensus         7 ~R~~i~~--~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~   57 (123)
                      .||.+..  .  ...+.|.|.++..+|+|.|+|+|.|.+|.+..++.|..  +|.||
T Consensus        32 ~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P   88 (88)
T cd05735          32 SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP   88 (88)
T ss_pred             CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence            5887653  1  22368999999999999999999999999999877664  56554

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.17  E-value=1.7e-10  Score=72.54  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             cccc-CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLET-TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~-d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|.. ++|+.+...+..+.|.|.++...|+|.|+|.|+|.+|.+.+++.|.
T Consensus        35 ~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~   85 (86)
T cd05894          35 AFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK   85 (86)
T ss_pred             ECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence            3443 4688887767788999999999999999999999999999998875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.14  E-value=1.8e-10  Score=73.50  Aligned_cols=50  Identities=28%  Similarity=0.516  Sum_probs=42.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l~   51 (123)
                      ++.+++|+.+...+..+.|+|.++..+|+|.|+|.|+|..|.. ..++.|.
T Consensus        40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~   90 (92)
T cd05866          40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE   90 (92)
T ss_pred             EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            3566789988877778899999999999999999999999997 4566553

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.14  E-value=1.6e-10  Score=70.52  Aligned_cols=47  Identities=30%  Similarity=0.299  Sum_probs=40.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..+.|+.+...   ++|.|.+++.+|+|.|+|.|+|.+|++.++..|.
T Consensus        26 ~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852          26 LLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             ecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            3456788888643   4799999999999999999999999999988775

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.13  E-value=2e-10  Score=71.55  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=33.2

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+.|.|.+++..|+|.|+|+|+|.+|.+.+++.|.
T Consensus        44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            356899999999999999999999999999998875

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.11  E-value=3.5e-10  Score=69.51  Aligned_cols=46  Identities=30%  Similarity=0.382  Sum_probs=38.7

Q ss_pred             CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++|+++...+ ...+|.|.+++.+|+|.|+|.|.|.+|++..+..|.
T Consensus        28 ~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892          28 TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            4788876443 235899999999999999999999999999987764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.10  E-value=3.7e-10  Score=71.40  Aligned_cols=49  Identities=31%  Similarity=0.422  Sum_probs=43.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.+..++.|
T Consensus        43 ~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          43 IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            3556789988776677899999999999999999999999999998876

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.09  E-value=4e-10  Score=71.32  Aligned_cols=50  Identities=22%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..++|+.+... +....|.|.+++.+|+|.|+|.|+|.+|.+...+.|.
T Consensus        41 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05737          41 ALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS   91 (92)
T ss_pred             ECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence            4566778877643 4467899999999999999999999999999988775

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.09  E-value=2.3e-10  Score=68.73  Aligned_cols=46  Identities=26%  Similarity=0.411  Sum_probs=38.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +|..+.|+.+..   .+.|.|.++...|+|.|+|.|.|.+|.+..++.|
T Consensus        23 ~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746          23 QVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             ECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            345567777753   3589999999999999999999999999998876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.08  E-value=5e-10  Score=71.64  Aligned_cols=46  Identities=30%  Similarity=0.496  Sum_probs=40.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus        52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD   97 (98)
T ss_pred             CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEe
Confidence            4688876555567899999999999999999999999999988774

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.07  E-value=3.9e-10  Score=70.14  Aligned_cols=50  Identities=16%  Similarity=0.147  Sum_probs=38.7

Q ss_pred             ccccCCCEEE--E---EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIM--E---TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i--~---~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..++|+..  .   .....+.|.|.++...|+|.|+|+|+|.+|++.+++.+.
T Consensus        23 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          23 ILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             ECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            4555655432  1   112356899999999999999999999999999998764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.05  E-value=8.8e-10  Score=67.65  Aligned_cols=46  Identities=26%  Similarity=0.307  Sum_probs=38.4

Q ss_pred             CCCEEEEEcCC-EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~-~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++|+.+...+. ...|.|.++..+|+|.|+|.|.|.+|++..+..|.
T Consensus        28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893          28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            46788765432 34799999999999999999999999999987764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.05  E-value=9.6e-10  Score=66.42  Aligned_cols=47  Identities=28%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++..+.|+.+...   +.|.|.+++.+|+|.|+|+|+|.+|+..++++|.
T Consensus        24 ~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723          24 MVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             ECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            3455677777543   3688999999999999999999999999998875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.05  E-value=8.9e-10  Score=70.74  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=37.8

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~   51 (123)
                      +.|+.+.. .+..++|.|.+++.+|+|.|+|+|+|.+ |+.++++.|.
T Consensus        47 ~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~   94 (96)
T cd05865          47 QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVK   94 (96)
T ss_pred             CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEE
Confidence            34666543 3446799999999999999999999997 9999988875

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.04  E-value=1.3e-09  Score=66.72  Aligned_cols=46  Identities=26%  Similarity=0.324  Sum_probs=38.5

Q ss_pred             CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++|+.+...+ ....|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus        28 ~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744          28 TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            4688775443 345799999999999999999999999999988774

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.03  E-value=6e-10  Score=67.50  Aligned_cols=46  Identities=35%  Similarity=0.398  Sum_probs=39.3

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      |..++|+.+...   +.|.|.+++..|+|.|+|+|.|.+|....++.|.
T Consensus        27 ~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969          27 LTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             cccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            456678877543   4799999999999999999999999999988775

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.03  E-value=1e-09  Score=69.46  Aligned_cols=46  Identities=26%  Similarity=0.500  Sum_probs=39.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|+.+......+.|+|.+++.+|+|.|+|.|+|.+|.+..++.|.
T Consensus        50 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          50 DGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             cceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEe
Confidence            3567666555678999999999999999999999999999988774

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.03  E-value=5.9e-10  Score=67.76  Aligned_cols=46  Identities=33%  Similarity=0.571  Sum_probs=38.5

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +..+.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus        28 ~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745          28 LSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            45566766643   35899999999999999999999999999988775

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.02  E-value=1.4e-09  Score=66.33  Aligned_cols=44  Identities=18%  Similarity=0.386  Sum_probs=36.9

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      .|+.+...+..+.|.|.+++..|+|.|+|+|.|.+|....++.+
T Consensus        33 ~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~   76 (76)
T cd05895          33 NKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV   76 (76)
T ss_pred             ceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence            44555555567899999999999999999999999999987653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.01  E-value=1.1e-09  Score=67.30  Aligned_cols=46  Identities=35%  Similarity=0.494  Sum_probs=39.8

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      ++..+.|+.+...+..+.|.|.++..+|+|.|+|.|.|.+|...+.
T Consensus        26 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743          26 HVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             ECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            3556678888777777899999999999999999999999998764

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.01  E-value=1.2e-09  Score=68.04  Aligned_cols=50  Identities=32%  Similarity=0.591  Sum_probs=45.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..++|+.+...+..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        40 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   40 PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            46678899998888899999999999999999999999999999998775

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.01  E-value=1.7e-09  Score=69.00  Aligned_cols=45  Identities=20%  Similarity=0.443  Sum_probs=38.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus        52 ~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          52 GHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             ccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            466665555567999999999999999999999999999988775

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.01  E-value=1.9e-09  Score=67.52  Aligned_cols=46  Identities=22%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             CCEEE-EEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+ ......+.|+|.+++..|+|.|+|+|.|.+|...+++.|..
T Consensus        35 ~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V   81 (85)
T cd05854          35 GHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV   81 (85)
T ss_pred             CcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence            45533 22234579999999999999999999999999999877754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.98  E-value=2e-09  Score=69.76  Aligned_cols=51  Identities=20%  Similarity=0.217  Sum_probs=39.5

Q ss_pred             ccccCCCEEEEEc-----CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-----GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.++.+...     ...+.|.|..+..+|+|.|+|+|+|.+|.+..++.|..
T Consensus        44 ~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V   99 (101)
T cd04975          44 TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYV   99 (101)
T ss_pred             eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEE
Confidence            4555555544322     13578999999999999999999999999999887763

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.95  E-value=1.6e-09  Score=68.26  Aligned_cols=46  Identities=24%  Similarity=0.279  Sum_probs=36.9

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .||.+.. ....+.|+|++++..|+|+|+|+|+|.++...++..|..
T Consensus        35 ~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V   81 (85)
T cd05853          35 DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV   81 (85)
T ss_pred             ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence            4665532 124568999999999999999999999999998766654

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.94  E-value=4e-09  Score=63.07  Aligned_cols=43  Identities=40%  Similarity=0.555  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|.+..++.|.
T Consensus        26 ~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725          26 KGRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CCcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            45666653   34899999999999999999999999999987764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.93  E-value=5.3e-09  Score=63.54  Aligned_cols=44  Identities=30%  Similarity=0.394  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|+.+...  .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus        30 ~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763          30 ERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             ccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            456665432  35899999999999999999999999999887765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.93  E-value=3.7e-09  Score=63.80  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=33.3

Q ss_pred             EEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207         11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (123)
Q Consensus        11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~   49 (123)
                      +......+.|.|.++..+|+|.|+|+|.|.+|.+..++.
T Consensus        36 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          36 IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            333445679999999999999999999999999988764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.92  E-value=4.6e-09  Score=66.61  Aligned_cols=49  Identities=27%  Similarity=0.413  Sum_probs=40.4

Q ss_pred             cccCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          3 LETTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         3 l~~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +..++|+.+.. .+..+.|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.
T Consensus        42 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05891          42 IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS   91 (92)
T ss_pred             CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence            45567776643 23346899999999999999999999999999998875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.90  E-value=4.4e-09  Score=63.99  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      |+.+.  +....|.|.++...|.|.|+|.|.|.+|.++.++.|.+.
T Consensus        31 ~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736          31 QLTLI--ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             cEEEe--CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            44443  334579999999999999999999999999999888653

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.89  E-value=3e-09  Score=64.12  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ...+.|.|.++..+|+|.|+|+|+|.+|..+.++.|.
T Consensus        28 ~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   64 (67)
T cd05863          28 HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLE   64 (67)
T ss_pred             CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEE
Confidence            3456899999999999999999999999887766553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.89  E-value=3e-09  Score=64.38  Aligned_cols=35  Identities=34%  Similarity=0.494  Sum_probs=30.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|....++.+.
T Consensus        34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976          34 GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            46899999999999999999999999887765543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.88  E-value=6.8e-09  Score=62.75  Aligned_cols=44  Identities=30%  Similarity=0.455  Sum_probs=35.6

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|+.+..   .+.|.|.++...|+|.|+|+|.|.+|.+..++.|.
T Consensus        30 ~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764          30 NSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            334444433   35799999999999999999999999999988774

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.86  E-value=7.5e-09  Score=65.11  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...|+.+..   .+.|+|.+++.+|+|.|+|.|.|.+|...+.+.|..
T Consensus        37 ~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   81 (90)
T cd05726          37 SSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEV   81 (90)
T ss_pred             CCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            356777753   247999999999999999999999999988776654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.86  E-value=4.2e-09  Score=63.58  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++.+|+|.|+|.|+|.+|.+..++.|..
T Consensus        34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            3568999999999999999999999999999887753

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.86  E-value=9.2e-09  Score=63.97  Aligned_cols=37  Identities=30%  Similarity=0.400  Sum_probs=32.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++..|+|.|+|+|.|.+|...++..|..
T Consensus        45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   81 (85)
T cd04970          45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV   81 (85)
T ss_pred             ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence            4578999999999999999999999999998766654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.85  E-value=1e-08  Score=64.94  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+..  ..+.|+|.+++..|+|.|+|.|.|.+|.+..++.|..
T Consensus        49 ~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V   92 (95)
T cd05730          49 EKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV   92 (95)
T ss_pred             CEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            5565542  3457999999999999999999999999999887764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.85  E-value=1.2e-08  Score=65.90  Aligned_cols=46  Identities=33%  Similarity=0.542  Sum_probs=40.1

Q ss_pred             CCCEEEEEc----CCEEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEEe
Q psy17207          6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.||.|...    +..+.|+|.++...| .|.|.|.|.|.+|.+...|.|.
T Consensus        48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L~   98 (98)
T cd05898          48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQLE   98 (98)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEeC
Confidence            589998653    688999999998878 5899999999999999998873

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.84  E-value=8e-09  Score=66.86  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.++..+|+|.|+|+|+|..|.+..++.|..
T Consensus        64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V   99 (101)
T cd05859          64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQI   99 (101)
T ss_pred             ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEE
Confidence            468999999999999999999999999998877653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.83  E-value=8.8e-09  Score=64.24  Aligned_cols=46  Identities=37%  Similarity=0.422  Sum_probs=38.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++..+.|+.+.    .+.|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus        39 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728          39 PLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             ECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            34555676653    34899999999999999999999999999988875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.83  E-value=1.1e-08  Score=63.00  Aligned_cols=46  Identities=24%  Similarity=0.543  Sum_probs=38.7

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|..+.|+.+.    ...|.|.+++.+|+|.|+|.|.|.+|.+...+.|.
T Consensus        33 ~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~   78 (79)
T cd04973          33 QLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN   78 (79)
T ss_pred             CCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence            56667788764    24799999999999999999999999988887664

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.83  E-value=9e-09  Score=64.76  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.|.|.+++.+|.|.|+|.|.|.+|.+..++.|..
T Consensus        53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             CEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            58999999999999999999999999999877753

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.82  E-value=1.8e-08  Score=65.90  Aligned_cols=47  Identities=26%  Similarity=0.361  Sum_probs=37.7

Q ss_pred             CCCEEEEE--c--CCEEEEEEcccC-CCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMET--R--GSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~--~--~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.||.+..  .  ...+.|+|.++. .+|+|.|+|.|.|.+|.+..++.|..
T Consensus        53 ~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~  104 (109)
T cd05773          53 NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVS  104 (109)
T ss_pred             CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence            45776532  1  124689999997 59999999999999999999988875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.82  E-value=1.6e-08  Score=64.64  Aligned_cols=45  Identities=36%  Similarity=0.485  Sum_probs=37.4

Q ss_pred             CCCEEEEEc----CCEEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEE
Q psy17207          6 TERRIMETR----GSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         6 d~R~~i~~~----~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +.||.+...    +..+.|.|.++..+| .|.|+|+|.|.+|.+.+.+.|
T Consensus        48 ~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          48 SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             CCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            368887643    345689999999955 899999999999999998876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.82  E-value=2.3e-08  Score=61.81  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ....|.|.++...|+|.|+|+|.|.+|....++.|.
T Consensus        49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857          49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            356899999999999999999999999999988775

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.81  E-value=3.1e-08  Score=62.29  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=35.0

Q ss_pred             EEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .......+.|.|.++...|.|.|+|.|.|.+|.+.+++.|.
T Consensus        49 ~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          49 LETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            33334567899999999999999999999999999988774

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.80  E-value=5.9e-09  Score=63.24  Aligned_cols=32  Identities=34%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~   49 (123)
                      +.|.|.++..+|+|.|+|+|.|.+|..+.+..
T Consensus        34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t   65 (70)
T cd05864          34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT   65 (70)
T ss_pred             CEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence            57999999999999999999999998776543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.80  E-value=3e-08  Score=62.85  Aligned_cols=47  Identities=30%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEe
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~   51 (123)
                      ..+|+.+.. .+..++|+|.+++.+|+|.|+|.|.|.+| ..++++.|.
T Consensus        43 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~   91 (92)
T cd04977          43 TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK   91 (92)
T ss_pred             cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence            345665443 34567999999999999999999999975 456677664

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.80  E-value=5.8e-09  Score=65.79  Aligned_cols=37  Identities=30%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ....|.|.+++.+|+|.|+|+|.|.+|...++..|.+
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          53 ESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             ccceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence            3468999999999999999999999999998877653

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.77  E-value=9.1e-09  Score=64.78  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|++++.+|+|.|+|+|.|.+|.+..+..|.
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   88 (90)
T cd05858          54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLT   88 (90)
T ss_pred             eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEE
Confidence            46899999999999999999999999998887665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.77  E-value=3.2e-08  Score=60.71  Aligned_cols=43  Identities=26%  Similarity=0.483  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      .++|+.+..   .++|.|.+++.+|+|.|+|+|.|.+|.+.. .+.|
T Consensus        34 ~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734          34 LAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             cCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            456776643   358999999999999999999999998843 4444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.76  E-value=2.7e-08  Score=60.68  Aligned_cols=36  Identities=31%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.+
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867          40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            358999999999999999999999999998877753

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.76  E-value=1.9e-08  Score=60.84  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++..|+|.|+|.|.|.+|...+.+.|..
T Consensus        40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978          40 GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            468999999999999999999999999999887753

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.76  E-value=1.9e-08  Score=61.46  Aligned_cols=35  Identities=37%  Similarity=0.472  Sum_probs=32.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            36899999999999999999999999999988875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.75  E-value=1.4e-08  Score=60.66  Aligned_cols=36  Identities=33%  Similarity=0.571  Sum_probs=32.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++..|+|.|+|.|.|.+|....++.|..
T Consensus        35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999999999999999999999999998887753

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.70  E-value=4.9e-08  Score=59.29  Aligned_cols=43  Identities=33%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL   50 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l   50 (123)
                      .+.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|... ....|
T Consensus        28 ~~~~~~~~~---~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738          28 SNGRIKQLR---SGALQIENSEESDQGKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CCCCEEEcC---CcEEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence            456777643   34799999999999999999999999864 34444

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.70  E-value=1.2e-07  Score=64.23  Aligned_cols=69  Identities=17%  Similarity=0.347  Sum_probs=48.3

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeCCCCCC-cceE
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYTPL-EEFK   87 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi-~~y~   87 (123)
                      +|+|.+++.+|+|.|+|.+.|..|.....+.|..  +|....+........+..+.|.|.+.+..|. ..+.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~   73 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVE   73 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEE
Confidence            6999999999999999999999999888777764  3332222211111135678999999876553 3444

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.67  E-value=5.5e-08  Score=59.30  Aligned_cols=36  Identities=25%  Similarity=0.540  Sum_probs=32.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|.+..++.|.
T Consensus        46 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856          46 KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             ceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            357899999999999999999999999999988774

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.64  E-value=7.1e-08  Score=59.78  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+.|+|.+++.+|+|.|+|.|.|.+|....+..|.
T Consensus        47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~   82 (84)
T cd05742          47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVN   82 (84)
T ss_pred             EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEE
Confidence            457899999999999999999999999998876663

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.64  E-value=5.3e-08  Score=59.53  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|.|.+++..|.|.|+|+|+|.+|...+++.|.
T Consensus        41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868          41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            4799999999999999999999999999988775

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.64  E-value=6.7e-08  Score=60.36  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|...++..|.
T Consensus        52 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (88)
T cd04968          52 GAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY   86 (88)
T ss_pred             CCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence            46899999999999999999999999999887764

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.62  E-value=1e-07  Score=57.44  Aligned_cols=31  Identities=23%  Similarity=0.472  Sum_probs=27.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ..|.|.++.  |+|.|+|.|.|.+|..+++.+|
T Consensus        38 ~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739          38 NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            479999974  8999999999999999998776

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.60  E-value=1.7e-07  Score=57.36  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=30.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .++.+..  ..+.|.|.+++.+|+|.|.|.|.|.+|....
T Consensus        29 ~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   66 (77)
T cd05760          29 GNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCS   66 (77)
T ss_pred             ccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence            3555542  2458999999999999999999999998754

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.59  E-value=1.1e-07  Score=59.22  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc--eeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~~i~l~~   52 (123)
                      ..+.|.|.+++.+|+|.|+|.|+|..+  ....++.|.+
T Consensus        44 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V   82 (84)
T cd05861          44 LRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITV   82 (84)
T ss_pred             EEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEE
Confidence            367899999999999999999999887  6666666553

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.58  E-value=1.9e-07  Score=59.20  Aligned_cols=43  Identities=30%  Similarity=0.467  Sum_probs=33.4

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      +|+.+..  ..+.|+|.+++.+|+|.|.|.|.|.+|...+ .+.|.
T Consensus        46 ~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~   89 (91)
T cd05740          46 PRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN   89 (91)
T ss_pred             CCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence            4555442  3458999999999999999999999998765 44443

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.53  E-value=2.8e-07  Score=58.68  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=29.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~   49 (123)
                      .+.|.|.++..+|+|.|+|+|.|.+|.....+.
T Consensus        51 ~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t   83 (92)
T cd05757          51 GSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT   83 (92)
T ss_pred             CCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence            468999999999999999999999998876543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>KOG3513|consensus

Probab=98.52  E-value=5.8e-07  Score=77.33  Aligned_cols=76  Identities=29%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             ccccCCC---EEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC-----CCCCCeEEE
Q psy17207          2 RLETTER---RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-----GRLPNSYNI   73 (123)
Q Consensus         2 ~l~~d~R---~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~-----~~~~~~~~L   73 (123)
                      ||...+|   +.+.    .+.|+|++++..|+|+|.|.|+|.+|...++.+|.+.-.+|.|...+.     ...+..+.|
T Consensus       371 pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i  446 (1051)
T KOG3513|consen  371 PLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTI  446 (1051)
T ss_pred             ecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEE
Confidence            4554555   8885    469999999999999999999999999999988876444333332222     124677888


Q ss_pred             EEEeCCCC
Q psy17207         74 TWMVSSYT   81 (123)
Q Consensus        74 ~w~~~s~~   81 (123)
                      .|++.+.+
T Consensus       447 ~C~~~asP  454 (1051)
T KOG3513|consen  447 DCKPFASP  454 (1051)
T ss_pred             eeccCCCC
Confidence            89887643

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.50  E-value=2.4e-07  Score=59.14  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.++..+|+|.|+|+|.|..|.....+.|.
T Consensus        59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~   93 (94)
T cd05756          59 KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLT   93 (94)
T ss_pred             CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEE
Confidence            35899999999999999999999999999988775

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.49  E-value=1.5e-06  Score=66.93  Aligned_cols=74  Identities=20%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE----EEEe--ccCCCceeecCC--CCCCCCeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY----LELS--GKPNPAIFRSHP--QGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~----i~l~--~~P~p~~~~~~~--~~~~~~~~~L~w~~   77 (123)
                      ++|+....   .+.|.|.+++.+|.|.|+|.|.|.+|.....    +.|.  ....||.+..+.  ....+..+.|.|.+
T Consensus       168 ~~r~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a  244 (326)
T PHA02785        168 NKRLKQRT---PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV  244 (326)
T ss_pred             CcceEecC---CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE
Confidence            34555432   3589999999999999999999999876532    3333  223344332211  11236789999999


Q ss_pred             CCCCC
Q psy17207         78 SSYTP   82 (123)
Q Consensus        78 ~s~~p   82 (123)
                      .++++
T Consensus       245 ~g~P~  249 (326)
T PHA02785        245 SLRPP  249 (326)
T ss_pred             ECCCC
Confidence            87765

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.48  E-value=5.2e-07  Score=55.36  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEE-EEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      +.++.+.  ...++|.|..+..    .|.|.|+|+|.|.+|.+.+ .+.|
T Consensus        29 ~~~~~~~--~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          29 DPKVTMK--PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CCCEEEe--CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            3455543  2346788888764    3789999999999999887 3443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.48  E-value=2.6e-07  Score=57.92  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+.|.|.+++.+|+|.|+|.|+|..|....+..|.
T Consensus        48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~   83 (86)
T cd05862          48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVI   83 (86)
T ss_pred             eeeEEEEecCCcccCEEEEEEEeecceEecccEEEE
Confidence            467899999999999999999999999888766554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.48  E-value=5.9e-07  Score=55.13  Aligned_cols=42  Identities=26%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEEE
Q psy17207          4 ETTERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus         4 ~~d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~~   47 (123)
                      ..+.|+.+.  ...+.|.|..+..    .|+|.|+|+|+|.+|.+.+.
T Consensus        27 ~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          27 AKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             cCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            456777764  2346899988752    47999999999999988764

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.47  E-value=3.3e-07  Score=56.55  Aligned_cols=38  Identities=34%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.|+.+..   .+.|.|.+++.+|+|.|+|.|.|.+|....
T Consensus        42 ~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724          42 NERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            45666543   358999999999999999999999998765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.45  E-value=3.6e-07  Score=55.88  Aligned_cols=39  Identities=28%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCC----CCCeeEEEEEEcCCceeEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.|+.+.  ...+.|.|.++..    .|+|.|+|+|.|.+|.+.+
T Consensus        29 ~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          29 DPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            3455543  2356899998854    7999999999999998775

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.44  E-value=2.7e-07  Score=57.18  Aligned_cols=35  Identities=34%  Similarity=0.480  Sum_probs=32.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|...++..|+
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~   85 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATLY   85 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEEC
Confidence            46899999999999999999999999999987763

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.43  E-value=1.1e-06  Score=64.59  Aligned_cols=59  Identities=15%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSS   79 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s   79 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|..+.++.|...+.+..    .....+..+.|.|.+.+
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~----~~~~~G~~v~L~C~~~~  155 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTIN----YQFNSGKDSKLHCYGTD  155 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCcc----ceEecCCCEEEEeeCCC
Confidence            358999999999999999999999999998888776432211    11124778899998753

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.40  E-value=5.1e-07  Score=55.07  Aligned_cols=30  Identities=20%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      ++|.|.+++.+|+|.|+|.|.|..+.....
T Consensus        36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~   65 (72)
T cd07702          36 YSLVIKDVTEEDAGIYTILLGIKQYNLFKN   65 (72)
T ss_pred             CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence            479999999999999999999985554443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.36  E-value=1.5e-06  Score=53.07  Aligned_cols=37  Identities=30%  Similarity=0.528  Sum_probs=33.0

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .....|.|.++..+|.|.|+|.|.|.+|....++.|.
T Consensus        48 ~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729          48 KKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             CcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            3456899999999999999999999999999888774

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.36  E-value=2e-06  Score=54.60  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      +.|+.+.    .+.|.|.++. ..|+|.|.|+|.|.+|...+ .+.|
T Consensus        50 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          50 ESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            3566654    2579998865 59999999999999998876 3443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG4221|consensus

Probab=98.33  E-value=2.4e-06  Score=74.30  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEc--CCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeC-CCCCCcceEEEeEEc
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATN--PMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS-SYTPLEEFKIKYRKI   93 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N--~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~-s~~pi~~y~v~yr~~   93 (123)
                      .+.|.|++++..|+|.|+|+|.|  ..+.+.+.+.|..+|..+.-.....  ...+++++|+.+ +..|+..+.| |+.-
T Consensus       290 ~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~--A~e~~die~ec~~~g~p~p~v~w-~kNg  366 (1381)
T KOG4221|consen  290 GSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLV--AHESMDIEFECPVSGKPIPTVRW-YKNG  366 (1381)
T ss_pred             ccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCccee--eeeccceeEeCCCCCCCcceEEE-EecC
Confidence            56899999999999999999999  5555556666666554332222222  233566677654 2347776664 4432


Q ss_pred             -CCCCCCceeeee
Q psy17207         94 -PGNEPSPMSNQL  105 (123)
Q Consensus        94 -~~~~~~w~~~~~  105 (123)
                       -..+..|.....
T Consensus       367 d~~ipsdy~ki~~  379 (1381)
T KOG4221|consen  367 DRIIPSDYFKIVG  379 (1381)
T ss_pred             cccCcccceEecC
Confidence             222344555443

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.32  E-value=1.4e-06  Score=55.35  Aligned_cols=41  Identities=32%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      ++|+.+.    .+.|.|.++. ..|+|.|+|+|+|.+|...+ .+.|
T Consensus        49 ~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          49 NDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            3566553    3589999985 69999999999999999865 3444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.31  E-value=1.7e-06  Score=54.95  Aligned_cols=29  Identities=34%  Similarity=0.554  Sum_probs=25.7

Q ss_pred             EEEEEcccC-CCCCeeEEEEEEcCCceeEE
Q psy17207         18 HTLMIRKVV-ASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        18 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.|.|.++. ..|+|.|+|+|.|.+|...+
T Consensus        58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          58 GNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            579999985 69999999999999998865

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.30  E-value=2.8e-06  Score=54.11  Aligned_cols=46  Identities=28%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|+.+..   .....+|+|.+++.+|+|.|+|.+.|.-|..++.+.|..
T Consensus        51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            5776642   234578999999999999999999999888888887753

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>smart00409 IG Immunoglobulin

Probab=98.29  E-value=5.9e-06  Score=49.16  Aligned_cols=47  Identities=34%  Similarity=0.508  Sum_probs=39.6

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .++|+.+........|.|.+++..|+|.|+|.+.|..|.....+.|.
T Consensus        38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00409       38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            45778777665578999999999999999999999999888776664

>smart00410 IG_like Immunoglobulin like

Probab=98.29  E-value=5.9e-06  Score=49.16  Aligned_cols=47  Identities=34%  Similarity=0.508  Sum_probs=39.6

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .++|+.+........|.|.+++..|+|.|+|.+.|..|.....+.|.
T Consensus        38 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~   84 (86)
T smart00410       38 ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT   84 (86)
T ss_pred             CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence            45778777665578999999999999999999999999888776664

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.28  E-value=3.7e-06  Score=53.81  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+.|+.+.. ......|.|.+++.+|.|.|+|.|..
T Consensus        48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            467887643 33468999999999999999999998

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.28  E-value=2.9e-06  Score=53.80  Aligned_cols=44  Identities=32%  Similarity=0.459  Sum_probs=34.9

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~~   52 (123)
                      .++|+.+.    .+.|.|.+++.+|+|.|+|.|. |.+|...+.++|.+
T Consensus        44 ~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v   88 (91)
T cd05871          44 TEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHV   88 (91)
T ss_pred             ccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEE
Confidence            34677653    2469999999999999999998 68888888777654

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.27  E-value=3.2e-06  Score=53.42  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +.||.+. ..+....|+|.+++.+|+|.|+|.+.+..
T Consensus        49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            4788774 23345789999999999999999999875

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.27  E-value=2.8e-06  Score=53.34  Aligned_cols=37  Identities=27%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCC-CCCeeEEEEEEcCCceeEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.|+.+.    .+.|.|.++.. .|+|.|+|+|+|.+|...+
T Consensus        50 ~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          50 DSRYSLV----GGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEE----CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            3455543    24799998875 9999999999999998765

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.26  E-value=5.2e-06  Score=52.92  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             cCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          5 TTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         5 ~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .++|+.+... ....+|.|.+++.+|+|.|+|.+.+.-
T Consensus        48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~   85 (95)
T cd07701          48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP   85 (95)
T ss_pred             cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence            4678876433 456789999999999999999999853

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.24  E-value=1e-06  Score=56.73  Aligned_cols=39  Identities=38%  Similarity=0.577  Sum_probs=30.7

Q ss_pred             ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus         4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      ..|+|..+..  ..+.|.|.+++.+|+|+|+|.|+|.++..
T Consensus        48 ~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          48 PEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            3456665542  35699999999999999999999987554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>KOG4194|consensus

Probab=98.18  E-value=1.3e-05  Score=66.19  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      .|..++.+  +-.+.|.|+..+|.|.|+|.|.|.+|...+.  +.|.+.|.+........-.-++.+.|.|..++.++
T Consensus       660 RRl~Vmpe--dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a  735 (873)
T KOG4194|consen  660 RRLHVMPE--DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA  735 (873)
T ss_pred             heeeecCC--CCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC
Confidence            45555543  3578999999999999999999999998875  45556676544333222225788899999876544

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.17  E-value=8.7e-06  Score=51.00  Aligned_cols=42  Identities=31%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             EEEEcCCEEEEEEc--ccCCCCCeeEEEEEEcCCcee-EEEEEEe
Q psy17207         10 IMETRGSRHTLMIR--KVVASDFGNYSCEATNPMGKH-RAYLELS   51 (123)
Q Consensus        10 ~i~~~~~~~~L~I~--~v~~~D~G~YtC~A~N~~G~~-~~~i~l~   51 (123)
                      .+...+....+.|.  .+...|+|.|+|+|+|.+|.+ ...+.|.
T Consensus        54 ~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~   98 (100)
T cd07693          54 IVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLE   98 (100)
T ss_pred             EEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEE
Confidence            33334433344333  347899999999999999994 4445443

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.16  E-value=7.8e-06  Score=52.76  Aligned_cols=46  Identities=26%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~   52 (123)
                      +|..+.. ...+.+|.|++++.+|.|.|+|...| ..|..++.+.|.+
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            6777642 33567899999999999999999999 7888888887753

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.13  E-value=9.1e-06  Score=52.27  Aligned_cols=46  Identities=20%  Similarity=0.407  Sum_probs=37.8

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+.. .....+|.|++++.+|+|.|.|.+.+..|.....+.|..
T Consensus        56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v  102 (106)
T cd05877          56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRL  102 (106)
T ss_pred             CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEE
Confidence            5777642 234668999999999999999999999999888887754

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.12  E-value=5.2e-06  Score=53.31  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=25.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ...|.|.++..+|+|.|+|+|.|..|...
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            35799999999999999999999976554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.12  E-value=1.3e-05  Score=51.54  Aligned_cols=46  Identities=33%  Similarity=0.491  Sum_probs=36.5

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~   52 (123)
                      +|..+..  ......|+|++++.+|+|.|+|...| ..|..++.+.|.+
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            5777753  23467899999999999999999998 6787777776653

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.09  E-value=4.3e-06  Score=53.50  Aligned_cols=30  Identities=20%  Similarity=0.404  Sum_probs=26.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ....|+|.+++.+|+|.|+|.+.|..++.+
T Consensus        63 g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          63 GSFPLIIKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             CeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence            356799999999999999999999988765

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.09  E-value=1.1e-05  Score=51.76  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|+||.... .+...+|+|++++.+|+|.|+|.+..
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            688998764 46677899999999999999998875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.08  E-value=1.6e-05  Score=51.79  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=34.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~   51 (123)
                      .++|..+..+   ++|.|++++..|+|.|+|.+.|.- ...++.++|.
T Consensus        60 ~~gR~~~~~n---gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          60 YSGRETIYPN---GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             cCCcEEEeCC---CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            4578887654   499999999999999999999986 4555666653

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.08  E-value=6.6e-06  Score=51.95  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=28.0

Q ss_pred             ccccC-CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         2 ~l~~d-~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +|..+ .|+.+.    .+.|.|.+++.+|+|.|+|.|.+.-
T Consensus        35 ~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          35 VLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34445 577654    2469999999999999999999863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.08  E-value=1.7e-05  Score=50.10  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             CEEEEEcCCEEEEEEccc-----CCCCCeeEEEEEEcC-CceeEE-EEEE
Q psy17207          8 RRIMETRGSRHTLMIRKV-----VASDFGNYSCEATNP-MGKHRA-YLEL   50 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v-----~~~D~G~YtC~A~N~-~G~~~~-~i~l   50 (123)
                      |+.+...   +.|.|.++     ...|.|.|.|.|.|. +|...+ .+.|
T Consensus        47 ~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l   93 (95)
T cd05722          47 RRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARL   93 (95)
T ss_pred             ceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEE
Confidence            4554432   35777776     589999999999999 999854 4554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.07  E-value=2.3e-05  Score=49.42  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             CCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207          7 ERRIMETRG-SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~   52 (123)
                      .|..+.... ....|+|++++.+|+|.|.|.+.+ ..|..+..+.|.+
T Consensus        50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            455544221 467899999999999999999875 6788888777653

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.03  E-value=5.3e-06  Score=53.28  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCe-eEEEEEEcCCcee
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKH   44 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~   44 (123)
                      +..|+|+.+..   .+.|.|.+++.+|.| .|.|.|+|.....
T Consensus        46 i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          46 ITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             ccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            45678887753   369999999999999 8999999986443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.99  E-value=1.9e-05  Score=50.82  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=33.0

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ....+|+|++++.+|+|.|.|.+.|..+.....++|..
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEE
Confidence            45678999999999999999999999888888777654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.96  E-value=1e-05  Score=45.64  Aligned_cols=27  Identities=44%  Similarity=0.689  Sum_probs=24.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ....|.|.++...|+|.|+|.+.|..|
T Consensus        37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       37 SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            346899999999999999999999876

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.95  E-value=2.5e-05  Score=51.09  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|+++..   ......|+|++++.+|+|.|.|......+..+..+.|.
T Consensus        58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~  105 (110)
T cd05878          58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLE  105 (110)
T ss_pred             CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEE
Confidence            5777742   23567899999999999999999987766666665554

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>KOG4222|consensus

Probab=97.93  E-value=1.8e-05  Score=68.62  Aligned_cols=45  Identities=36%  Similarity=0.501  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP   54 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P   54 (123)
                      +++.+.   ..+.|.|.++.+.|.|.|.|+|.|.+|..+.   .+.+.++|
T Consensus       179 ~~~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P  226 (1281)
T KOG4222|consen  179 PIIALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKP  226 (1281)
T ss_pred             eeEEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCC
Confidence            445444   3569999999999999999999999999986   35555544

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.90  E-value=3.5e-05  Score=50.80  Aligned_cols=45  Identities=24%  Similarity=0.389  Sum_probs=35.6

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +|+++..   .....+|+|.+++.+|+|.|.|...+.+......+.|.
T Consensus        60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~  107 (112)
T cd05900          60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQ  107 (112)
T ss_pred             CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEE
Confidence            4787754   33568999999999999999999998777666665554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.88  E-value=1.9e-05  Score=49.01  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=24.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ..+.|.|.++  .|.|.|.|+|.|.+|...+
T Consensus        47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            3468999987  5889999999999998775

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.82  E-value=8.4e-05  Score=47.73  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=36.2

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcC-CceeEEEEEEe
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~i~l~   51 (123)
                      +|..+.. ...+.+|+|++++.+|.|.|+|...+- .|..++.|.|.
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            5777652 235679999999999999999977665 88888888775

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.82  E-value=4.6e-05  Score=48.96  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             cCCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          5 TTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         5 ~d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .++|+.+...  .....|.|++++.+|+|.|.|.+.+..|
T Consensus        55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            4578877543  3577899999999999999999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.80  E-value=4.2e-05  Score=48.62  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .+|+.+....  ....|+|++++.+|+|.|.|.+.+..+
T Consensus        53 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          53 KGRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CCcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            4688775443  577899999999999999999998776

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.79  E-value=7.3e-05  Score=47.67  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL   50 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l   50 (123)
                      +|+.+  .....+|+|++++.+|+|.|.|...+..|... ..+.|
T Consensus        52 ~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L   94 (97)
T cd05775          52 ERVNF--SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTL   94 (97)
T ss_pred             eeEEe--cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEE
Confidence            35555  34468899999999999999999998877664 34444

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.76  E-value=3e-05  Score=45.64  Aligned_cols=25  Identities=48%  Similarity=0.703  Sum_probs=22.7

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ...+.|.|.++..+|.|.|+|+|.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3467899999999999999999998

...

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.74  E-value=5.3e-05  Score=47.19  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=27.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcC-CceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~i~l~~   52 (123)
                      ..|.|.+++.+|+|.|.|.|.|. .+....++.|.+
T Consensus        51 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V   86 (89)
T cd04979          51 DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV   86 (89)
T ss_pred             CCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence            35999999999999999999875 455555666653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.74  E-value=0.00013  Score=46.90  Aligned_cols=45  Identities=27%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CCEEEE-EcCCEEEEEEcccCCCCCeeEEEE-EEcCCceeEEEEEEe
Q psy17207          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~-A~N~~G~~~~~i~l~   51 (123)
                      +|..+. ....+.+|.|++++.+|.|.|+|. +....|...+++.|.
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~   94 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVT   94 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEE
Confidence            577764 234467999999999999999997 566799998887765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.70  E-value=9.6e-05  Score=45.95  Aligned_cols=36  Identities=19%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      +|+.+..+   +.|.|.+++.+|+|.|+|...+..|...
T Consensus        49 ~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~~~~~~~~   84 (92)
T cd05741          49 GRETIYPN---GSLLIQNLTKEDSGTYTLQIISTNGVTE   84 (92)
T ss_pred             CeEEEcCC---ceEEEccCCchhcEEEEEEEEcCCCcEE
Confidence            56666532   7899999999999999999998865544

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.69  E-value=9e-05  Score=47.02  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ++|+.....+....|+|++++.+|+|.|.|.+.+
T Consensus        51 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          51 PDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            4688887767788999999999999999998875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.68  E-value=4.9e-05  Score=47.19  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=25.8

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus        47 ~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          47 NSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             CceEEECccCHHHCEEEEEEEEeCCceec
Confidence            46899999999999999999999988544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.65  E-value=0.00026  Score=54.49  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..|.|.++..+|+|.|+|+|.|..|....++.|..
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V  116 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI  116 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence            35889999999999999999999998887765543

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.63  E-value=0.00014  Score=47.42  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=30.9

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ...|.|.++..+|+|.|+|++.|.-.....++.|.
T Consensus        69 ~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          69 EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEE
Confidence            45899999999999999999999988888777664

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.63  E-value=0.0002  Score=46.88  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=27.8

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      .|+.+..  .....+|+|.+++.+|+|.|.|.+.|.-+.
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence            4555542  234578999999999999999999987543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.63  E-value=0.00017  Score=46.85  Aligned_cols=37  Identities=11%  Similarity=0.149  Sum_probs=33.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.+..+..+|+|.|+|.|.|..+.+..++.|..
T Consensus        63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v   99 (101)
T cd05860          63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYV   99 (101)
T ss_pred             EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEE
Confidence            4578999999999999999999999999999988763

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.61  E-value=4.5e-05  Score=46.93  Aligned_cols=24  Identities=25%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ..+.|+|.++ .+|+|.|+|.|.|.
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCC
Confidence            4568999999 99999999999985

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.61  E-value=0.00012  Score=53.94  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +|..++|+.+..  ..+.|.|.+++.+|+|.|+|+|....
T Consensus       174 ~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        174 IVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             ECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            355667877653  34589999999999999999999874

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.61  E-value=0.00011  Score=47.61  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRG-SRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~-~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+.... ....|+|.+++.+|+|.|.|.+.+..|
T Consensus        59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence            4788775433 567899999999999999999987543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.60  E-value=9.6e-05  Score=47.55  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.....+....|+|++++.+|+|.|.|.+.+.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          59 PSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            36888765566778999999999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.60  E-value=0.0002  Score=47.46  Aligned_cols=37  Identities=22%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      +|+.+..  ...+.+|.|++++.+|.|.|+|...|.-+.
T Consensus        67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCc
Confidence            5887753  235678999999999999999999997553

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.52  E-value=0.00028  Score=46.34  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|.++..+   ....+|.|++++.+|+|.|.|.........+..+.|..
T Consensus        58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V  106 (110)
T cd05902          58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEV  106 (110)
T ss_pred             cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEE
Confidence            57777542   24679999999999999999999987666666666643

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.51  E-value=0.00037  Score=44.16  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+.  ...+|.|.+++.+|+|.|.|.....
T Consensus        65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence            4677766543  4788999999999999999998886

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.50  E-value=0.00048  Score=45.82  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|.++..+   ....+|.|.+++.+|+|.|.|...+.....+.++.|..
T Consensus        65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V  113 (117)
T cd05901          65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDV  113 (117)
T ss_pred             CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEE
Confidence            46666432   24678999999999999999999988888887776653

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.50  E-value=0.00039  Score=43.66  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=30.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      +|..|+|+.....    .|.|.+++..|+|.|.|.|. +.|-..
T Consensus        35 ~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~-E~gf~~   73 (85)
T cd05872          35 PLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE-EEGFQQ   73 (85)
T ss_pred             ccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe-cCCCeE
Confidence            4667888887654    38899999999999999887 344443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.48  E-value=9.2e-05  Score=42.90  Aligned_cols=18  Identities=39%  Similarity=0.739  Sum_probs=17.5

Q ss_pred             EEEcccCCCCCeeEEEEE
Q psy17207         20 LMIRKVVASDFGNYSCEA   37 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A   37 (123)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.47  E-value=0.00024  Score=46.73  Aligned_cols=37  Identities=22%  Similarity=0.483  Sum_probs=28.2

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      +|+.+..  .....+|+|++++.+|+|.|+|.+.|.-+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          66 GRVVWDGNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             CeEEEecCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            3554432  234667999999999999999999987654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02633 hypothetical protein; Provisional

Probab=97.45  E-value=0.00045  Score=40.86  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +...|.|-++..+|+|.|+|+-.|.-=..+.++.|..
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V   52 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI   52 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence            4568999999999999999999998888888887775

>smart00406 IGv Immunoglobulin V-Type

Probab=97.42  E-value=0.00021  Score=42.80  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      .+|+.+...  .....|.|++++.+|+|.|.|.
T Consensus        48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            478887654  6678899999999999999995

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.38  E-value=0.00033  Score=45.60  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.6

Q ss_pred             CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..|+.+....  ....|+|.+++.+|+|.|.|.+..
T Consensus        63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            4688876554  578999999999999999998864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4221|consensus

Probab=97.38  E-value=0.00038  Score=61.09  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--E---EEeccCCCceeecCCCCCCCCeEEEEEEeCC----CCCCcce
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--L---ELSGKPNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEEF   86 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i---~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s----~~pi~~y   86 (123)
                      +...++|+++.+.+.=.|.|+|.|.+|...++  |   .+.+.|.+|..........+.++.+.|.++.    ...|+.|
T Consensus       572 n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgY  651 (1381)
T KOG4221|consen  572 NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGY  651 (1381)
T ss_pred             CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEE
Confidence            45689999999999999999999999988764  3   3346676554322223346899999999642    3567889


Q ss_pred             EEEeEEcCC
Q psy17207         87 KIKYRKIPG   95 (123)
Q Consensus        87 ~v~yr~~~~   95 (123)
                      ++.|+....
T Consensus       652 kIRy~~~~~  660 (1381)
T KOG4221|consen  652 KIRYRKLSR  660 (1381)
T ss_pred             EEEecccCc
Confidence            999997643

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.35  E-value=0.00054  Score=43.43  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=32.3

Q ss_pred             CCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEe
Q psy17207          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS   51 (123)
Q Consensus         7 ~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~   51 (123)
                      +|+.+. .......|+|++++.+|+|.|.|... ...|.....+.|.
T Consensus        49 ~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~   95 (97)
T cd05846          49 RRRSITSLGLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLT   95 (97)
T ss_pred             CeEEEcCCCCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEE
Confidence            455543 22356789999999999999999755 5567666666654

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.34  E-value=0.00032  Score=45.22  Aligned_cols=34  Identities=15%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..|+.+........|+|++++.+|+|.|.|...+
T Consensus        57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            4678876656788899999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>KOG4222|consensus

Probab=97.27  E-value=0.00064  Score=59.40  Aligned_cols=75  Identities=23%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      .||.|.-  ...+|.|.+++..|.|.|.|.|.|.+|..++.  +.|.++|....-...........+.|.|++.+.+|.
T Consensus       269 ~ry~i~~--d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~P  345 (1281)
T KOG4222|consen  269 SRYSILD--DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPP  345 (1281)
T ss_pred             cceeeee--ccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCc
Confidence            5787763  34689999999999999999999999999874  555555544332222222346678889998877654

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.20  E-value=0.0006  Score=44.03  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=27.0

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.+.  ..+....|+|.+++.+|+|.|.|...+
T Consensus        58 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          58 QEKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             cCcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEcC
Confidence            4688763  334567899999999999999998763

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.16  E-value=0.00059  Score=40.58  Aligned_cols=32  Identities=34%  Similarity=0.648  Sum_probs=25.2

Q ss_pred             EEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEe
Q psy17207         20 LMIRKVVASDFGNYSCEATNPMG-KHRAYLELS   51 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~   51 (123)
                      |.|.++..+|.|.|+|.|.|..| .....+.|.
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            78899999999999999999665 344455553

...

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.14  E-value=0.00068  Score=44.23  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+++..  ......|+|.+++.+|+|.|.|.+.+.
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            57998863  345678999999999999999988853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG4194|consensus

Probab=97.10  E-value=0.0011  Score=55.25  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEE---EEEeccCCCceeecCCCCCCCCeEEEEEEeCCC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~   80 (123)
                      ..+.|...+|...|.|.|.|+++|.+|++.+.   +.|...|....-+.......+.-..|.|.+.+.
T Consensus       572 ~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~  639 (873)
T KOG4194|consen  572 YTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGH  639 (873)
T ss_pred             hhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCC
Confidence            34679999999999999999999999999873   444444432211111111134445566665443

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.04  E-value=0.0011  Score=43.58  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=27.4

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+++.  .......|+|++++.+|+|.|.|.....
T Consensus        67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            588774  2455678999999999999999987653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.94  E-value=0.0021  Score=40.53  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+.+..  ......|+|.+++.+|+|.|.|.+.+..
T Consensus        50 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          50 EGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            46887753  2456789999999999999999888754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.77  E-value=0.0015  Score=40.99  Aligned_cols=26  Identities=15%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +....|.|.+++.+|+|.|+|...|.
T Consensus        50 ~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChhHCEEEEEEEECC
Confidence            34567999999999999999999885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03376 BARF1; Provisional

Probab=96.55  E-value=0.024  Score=41.02  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +.-.|+.+..+.+.-+|.|.+++.+|.|.|+|+-.-.-.
T Consensus        73 EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~  111 (221)
T PHA03376         73 PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET  111 (221)
T ss_pred             ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence            344677776667788999999999999999998876443

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.52  E-value=0.003  Score=39.21  Aligned_cols=28  Identities=25%  Similarity=0.221  Sum_probs=25.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      .++|.|......|.+.|+|.|.|..+..
T Consensus        42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          42 SNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            4589999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd00096 Ig Immunoglobulin domain

Probab=96.50  E-value=0.0073  Score=33.40  Aligned_cols=28  Identities=39%  Similarity=0.654  Sum_probs=24.0

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      ....|.|.++...|.|.|.|.+.+..+.
T Consensus        41 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096          41 GSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             eEEEEEECccCcccCcEEEEEEecCcCc
Confidence            4568999999999999999999987633

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.36  E-value=0.01  Score=42.48  Aligned_cols=46  Identities=17%  Similarity=0.243  Sum_probs=33.2

Q ss_pred             CCEEE-EEcCCEEEEEEcccCCCCCeeEEEEEEc-CCc-eeEEEEEEec
Q psy17207          7 ERRIM-ETRGSRHTLMIRKVVASDFGNYSCEATN-PMG-KHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i-~~~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G-~~~~~i~l~~   52 (123)
                      +|+.+ ...-....|+|.+++.+|+|.|+|.-.- ..| ..+++..|..
T Consensus        73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV  121 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV  121 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence            47764 3444567899999999999999996543 346 5666666654

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.36  E-value=0.0046  Score=40.68  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=26.8

Q ss_pred             CCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETRG--SRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+.+..+.  ....|+|.+++.+|+|.|.|.+..
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            688776433  455799999999999999998765

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02982 hypothetical protein; Provisional

Probab=96.21  E-value=0.1  Score=38.32  Aligned_cols=91  Identities=15%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEeccCCCceeecCCCCCCCCeEEEEEEeCCC-CCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-TPL   83 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~-~pi   83 (123)
                      -++|.+.-.++.++|+|.++..+..|-|+|+|...-|..+. .-.|..              ..+.+.+.|.-..+ .-+
T Consensus        88 kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V--------------~~~~V~~~W~e~nNeT~V  153 (251)
T PHA02982         88 KDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEI--------------QKEDILYVVEEHNNETII  153 (251)
T ss_pred             ceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeE--------------ecceEEEEEEecCCeEEE
Confidence            35677777889999999999999999999999976655554 111111              13445666764222 222


Q ss_pred             cceEEEeEEcCCCCCCceeeeecccccccc
Q psy17207         84 EEFKIKYRKIPGNEPSPMSNQLTGTNQYQN  113 (123)
Q Consensus        84 ~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~  113 (123)
                      .=|...|...   -+.|+..-...+.++++
T Consensus       154 ~CyVgS~~~d---vp~W~V~GVvttGg~~s  180 (251)
T PHA02982        154 TCFVGSKHGD---VPRFIVAGIVTTGGPMS  180 (251)
T ss_pred             EEEEEeccCC---CccEEEeeEEecCCccc
Confidence            2244433321   14676666655555554

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.11  E-value=0.015  Score=35.38  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +.|.|......|.|.|+|+|.|..
T Consensus        46 s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759          46 STLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEeCceecCCCEEEEEEcCcc
Confidence            578898888889999999999974

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.03  E-value=0.031  Score=42.00  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      |....++.+...   +.|.+.+++.+++|.|+|..+=..
T Consensus        25 l~gn~~~nIT~T---G~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   25 LSGNSYVNITET---GKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             cCCCCeEEEccC---ceEEeeccccccCCceEEEEEEEe
Confidence            444456666654   479999999999999999877544

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=94.73  E-value=0.23  Score=29.42  Aligned_cols=52  Identities=15%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             CCCeEEEEEEeCC--CCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSS--YTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s--~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|..+.  ..++..|.|+|+...... .|........   .+...+..|.+
T Consensus        12 ~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~-~~~~~~~~~~---~~~~~i~~L~p   65 (85)
T PF00041_consen   12 SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS-DWQEVTVPGN---ETSYTITGLQP   65 (85)
T ss_dssp             CSSEEEEEEEESSSTSSSESEEEEEEEETTSSS-EEEEEEEETT---SSEEEEESCCT
T ss_pred             CCCEEEEEEECCCCCCCCeeEEEEEEEecccce-eeeeeeeeee---eeeeeeccCCC
Confidence            5789999999874  788999999999875422 2444443322   22455665544

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd00098 IgC Immunoglobulin Constant domain

Probab=93.71  E-value=0.11  Score=32.01  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +.|.|......|.|.|+|+|.+...
T Consensus        62 s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          62 SQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             EEEEECHHHhCCCCCEEEEEEeCCC
Confidence            4677877777899999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=93.63  E-value=0.11  Score=32.70  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      ...+.|..++.+|+|.|.|...
T Consensus        54 ~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          54 QASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEEecCCCcccCEEEEEEEE
Confidence            4578999999999999999765

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.78  E-value=0.1  Score=35.31  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=25.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+|.+...+.- .|+|+|.+.....+.+..++|..
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            44777775555 89999999999999998888875

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.27  E-value=0.35  Score=31.66  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .||.+..  ..-.|.|+.++..|+|.|.-..+|.-|..-.
T Consensus        62 ~r~~F~~--enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~   99 (108)
T PF11465_consen   62 NRFNFTS--ENLALLIKAAQPQDSGLYCLEVTNESGKVCT   99 (108)
T ss_dssp             HHEEEET--TTTEEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred             ceEeeec--cCceEEEeecCcccCceEEEEEEcCCCcEEE
Confidence            4677763  2358999999999999999999999998854

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3515|consensus

Probab=91.66  E-value=0.53  Score=40.34  Aligned_cols=76  Identities=25%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceee--cCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR--SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~--~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ..+.+.++...|.|.|.|.|.|..|.+...+.+...-.|....  .......++++.+.|..+..+--..+.-|+|.-
T Consensus       458 ~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~g  535 (741)
T KOG3515|consen  458 GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSG  535 (741)
T ss_pred             cccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccC
Confidence            3445778999999999999999999999988754322222111  112233567766666655554444556566654

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=90.09  E-value=1.1  Score=28.29  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +..+|.+..+...|+|..+|..+-..=+.++.+.|
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V   83 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI   83 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence            45689999999999999999886433333344433

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=89.99  E-value=1.1  Score=27.18  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=19.7

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      +.|.+......|.+.|+|+|.|....
T Consensus        45 s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          45 SSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEcchhhCCCEEEEEEeChhcC
Confidence            45777666667778999999997544

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG1480|consensus

Probab=89.77  E-value=0.13  Score=44.04  Aligned_cols=31  Identities=48%  Similarity=0.772  Sum_probs=27.9

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ..+.|+|..+...|.|+|+|+|.|.++....
T Consensus       181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~~  211 (909)
T KOG1480|consen  181 SDHNLIISQARLSDSGNYTCEATNIVAKRKS  211 (909)
T ss_pred             hcCCccccchhhhhcccceeeeehhhccccc
Confidence            3568999999999999999999999998875

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=87.50  E-value=0.82  Score=28.38  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.9

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .++|.|..-...|...|+|.|.|..
T Consensus        43 ~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883          43 TSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEECchhhCCCEEEEEEcCcc
Confidence            4689998888999999999999964

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PHA03042 CD47-like protein; Provisional

Probab=86.70  E-value=2.1  Score=32.52  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=25.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+|++..- ..=.|+|||.|.+..-+.+..++|..
T Consensus        70 ~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~  104 (286)
T PHA03042         70 TSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY  104 (286)
T ss_pred             ceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence            345665544 44479999999998877777777764

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=85.88  E-value=1.8  Score=28.75  Aligned_cols=32  Identities=9%  Similarity=0.191  Sum_probs=24.8

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|+++.  ...+.-.|.|.+++.+|++.|.|.-+
T Consensus        61 ~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          61 DGFNCDGTLGNEQVNFTLQNLRANQTDIYFCKIE   94 (115)
T ss_pred             CCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence            566554  33556689999999999999999543

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=85.74  E-value=1.2  Score=28.65  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      ..+|++..-...|.-+|+|+|.+.++.
T Consensus        61 ~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          61 PATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             EEEEEEecchhhCCcEEEEEEEeccCc
Confidence            457887766556666999999997654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=83.10  E-value=6  Score=22.54  Aligned_cols=37  Identities=16%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             CCeEEEEEEeCCC--CCCcceEEEeEEcCCCCCCceeeeec
Q psy17207         68 PNSYNITWMVSSY--TPLEEFKIKYRKIPGNEPSPMSNQLT  106 (123)
Q Consensus        68 ~~~~~L~w~~~s~--~pi~~y~v~yr~~~~~~~~w~~~~~~  106 (123)
                      ..++.|.|.....  ..+..|.+.|+...  ...|......
T Consensus        14 ~~~~~v~W~~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~   52 (93)
T cd00063          14 STSVTLSWTPPEDDGGPITGYVVEYREKG--SGDWKEVEVT   52 (93)
T ss_pred             CCEEEEEECCCCCCCCcceeEEEEEeeCC--CCCCEEeecc
Confidence            5788999997543  35678999988764  4567766643

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=81.58  E-value=3.8  Score=26.15  Aligned_cols=34  Identities=15%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             CeEEEEEEe-CCCCCCcceEEEeEEcCCCCCCceeee
Q psy17207         69 NSYNITWMV-SSYTPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        69 ~~~~L~w~~-~s~~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      -...|.|++ ++.++-..|+|+|+..  ....|..++
T Consensus        35 f~~iL~W~~~~~~~~~~~ytVq~~~~--~~~~W~~v~   69 (107)
T PF01108_consen   35 FKHILRWDPGPGSPPNVTYTVQYKKY--GSSSWKDVP   69 (107)
T ss_dssp             TEEEEEEEESTTSSSTEEEEEEEEES--STSCEEEEC
T ss_pred             CceEEEeCCCCCCCCCeEEEEEEEec--CCcceeecc
Confidence            356799999 4556677899999943  357899884

...

>KOG3515|consensus

Probab=81.22  E-value=2.6  Score=36.25  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE---EEEeccCCCceeecCCCCCCCCeEEEEEEe-CCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSGKPNPAIFRSHPQGRLPNSYNITWMV-SSYTP   82 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~-~s~~p   82 (123)
                      +|+....   ..+|...+..+..-+.|.|.|.|+.|.....   ..+.++|.--.+...........+.+.|.. .+..|
T Consensus        51 ~~~~~~~---~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P  127 (741)
T KOG3515|consen   51 GRYATIA---DPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRP  127 (741)
T ss_pred             ccccccc---CCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCC
Confidence            4554443   4588899999999999999999997766653   222333332222222233356788899964 46677


Q ss_pred             CcceEEEeEEc
Q psy17207         83 LEEFKIKYRKI   93 (123)
Q Consensus        83 i~~y~v~yr~~   93 (123)
                      ...|+|.+...
T Consensus       128 ~~nlrW~~n~r  138 (741)
T KOG3515|consen  128 NPNLRWGFNNR  138 (741)
T ss_pred             CcceeeeeccE
Confidence            77788776543

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=81.09  E-value=1.9  Score=25.69  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=17.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ....+...+.. ++.|.|.|.+.+.
T Consensus        33 ~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          33 SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             CCceEEeeccC-CCCceEEEEeCCC
Confidence            33456666666 8899999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00060 FN3 Fibronectin type 3 domain

Probab=80.96  E-value=6.4  Score=21.63  Aligned_cols=52  Identities=13%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             CCeEEEEEEeCCCCCCcceEEEeEEcCCCC-CCceeeeeccccccccceeeeeeec
Q psy17207         68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNE-PSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        68 ~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..++.+.|.++.......|.+.|....... ..|........   ++.+.+++|.+
T Consensus        14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~L~~   66 (83)
T smart00060       14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPS---STSYTLTGLKP   66 (83)
T ss_pred             CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCC---ccEEEEeCcCC
Confidence            448899999543322266788776653321 24655544433   45555555543

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=80.45  E-value=2.6  Score=25.39  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=23.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+|.+-.+...=.|.|.|.+++  -..+.+++|.
T Consensus        32 ~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQVy   64 (69)
T cd07691          32 NTLLDLGSRINDPRGTYSCKESE--PNKEKTLQVY   64 (69)
T ss_pred             ccEEeccCcccCCCcceEecCcc--CCCcEEEEEE
Confidence            34677777778889999999988  2334555554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=80.37  E-value=2.9  Score=25.50  Aligned_cols=24  Identities=8%  Similarity=0.170  Sum_probs=19.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +.|.|......|...|+|+|.+..
T Consensus        46 s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705          46 SSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecchhCCCEEEEEEECcc
Confidence            456776777788899999999864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-08
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-11
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-10
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-08
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-07
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-09
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-07
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-07
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-08
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-09
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	6e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-08
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-08
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-08
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-08
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-08
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-05
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-08
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	8e-06
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	7e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-08
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-04
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-05
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-07
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-07
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-07
2ens_A	96	Advanced glycosylation END product-specific recept	4e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-06
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-04
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-05
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	8e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-06
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-06
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-06
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	5e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-05
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	5e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	6e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	9e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	9e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-04
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	9e-04

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 58.3 bits (141), Expect = 3e-11
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
           L+           +  TL I +   S  G Y+C A+NP+G     A L LS    P  F 
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD 201

Query: 61  SHPQ 64
             P 
Sbjct: 202 LKPV 205

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIF 59
           +L +     M+ + +  +L+I KV  SD G Y+C+A N +G     A L +  +  P  F
Sbjct: 45  KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104

Query: 60  RSHPQ 64
               +
Sbjct: 105 ARKLK 109

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFR 60
           L + ++  + +     ++ I  V ++D G Y C+A+N +G       + L   P    F 
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP---RFV 481

Query: 61  SHPQ 64
               
Sbjct: 482 KKLS 485

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
            +       M    +  TL + KV   D G Y+C A+N  GK    A L +   P    F
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR---F 293

Query: 60  RSHPQ 64
               +
Sbjct: 294 IKKLE 298

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 9/49 (18%), Positives = 20/49 (40%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  ++   +    +  TL   +   ++ G Y+C+  N  G    +  LS
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFR 60
           ++ + +  M    S   L +  +   D G+Y+CEA N  G       L++   P   +FR
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP---VFR 388

Query: 61  SHPQ 64
             P 
Sbjct: 389 KKPH 392

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 4   ETTERRI-METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
            +    I +    S   L +     +DFGNY+C A N +G+      L     P+     
Sbjct: 61  SSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID 120

Query: 63  PQGRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRK 119
                 ++  + +     T   P+ ++K ++R   G E              +    +  
Sbjct: 121 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRA-VGEEVWHSKWYDAKEASMEGIVTIVG 179

Query: 120 ITEN 123
           +   
Sbjct: 180 LKPE 183

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            +  ++R      G +  L I +   +D G Y  E  +    H+  ++LSG+     +  
Sbjct: 43  AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 102

Query: 62  HPQGRLP 68
             + +  
Sbjct: 103 FQRLKQA 109

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 3   LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L  T+   +    G      I  V  +D G Y     N  G   +   +S
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
           ++ +E   +E   +   L I        G Y+    N +G  +A + L+   KP+P
Sbjct: 48  IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
              +     R  L I  V  ++ G YS +ATN  G+    A L +  +  P  F    Q
Sbjct: 53  GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
           ++++    +   G  ++L+I +    D G YS  ATN +G+    A L 
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            +  ++R      G +  L I +   +D G Y  E  +    H+  ++LSG+     +  
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207

Query: 62  HPQGRLP 68
             + +  
Sbjct: 208 FQRLKQA 214

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 1   MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L + +   +    G      I  V  +D G Y     N  G   +   +S
Sbjct: 261 KALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +    +  
Sbjct: 48  ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMM 103

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           L  + +  M + G  HTL +      D G Y+C ATN +G+    + L L   P
Sbjct: 48  LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATP 101

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELS 51
            L+ +E   +E       L+++ V   +  G Y  + +N  G   A L++ 
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.6 bits (124), Expect = 5e-10
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
           + ++ R     +G ++ L++R+   SD G           K  A L +  +  P+
Sbjct: 50  VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSK--ASLIVRERSGPS 102

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
                 +++ + S  ++       +D GNY  +  N +G+  A  E+
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             +  +++      H+L+I  V + D G Y+C ATN  G+      L ++ K + 
Sbjct: 52  PDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
            E + R  +E++G++  +  + +   D G YSC+ T+  G   +YL    +    +  SH
Sbjct: 43  TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102

Query: 63  PQGRLP 68
                 
Sbjct: 103 EHKFPT 108

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +
Sbjct: 263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 3   LETTERRIMETRGS--RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +    +  M    +     + + K+   D G Y+ +  +    + + + L G     + +
Sbjct: 149 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 208

Query: 61  SHPQGRLP 68
                R  
Sbjct: 209 EAEFQRQE 216

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN--PAIFRSHPQ 64
              + R    +L++  VV SD GNY+C   N  G   H  +L++  +    P +    P 
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             L +  V  +D G Y C+ +N +G+    A+L +  K   
Sbjct: 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           ++ +T+R +++  G R  L I      D G Y C+AT+  G+       LE+  K     
Sbjct: 44  KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL---T 100

Query: 59  FRSHPQ 64
           FR    
Sbjct: 101 FREVVS 106

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
            +E  E+ I++  GS   L +R ++ SD G Y C ATN  G+   +A+L++  + +    
Sbjct: 234 LIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH---H 288

Query: 60  RSH 62
             H
Sbjct: 289 HHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMG 42
           + + L I  +  SD G Y CE      
Sbjct: 151 ANNNLQILNINKSDEGIYRCEGRVEAR 177

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPN 55
             + +    R TL+I+ V   D G Y+  A N  G       L+++ +PN
Sbjct: 63  ISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 3   LETTERRIMETRGSRH----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
           L  ++   +E           L+  K    + GNY+  A NP+G            +P P
Sbjct: 46  LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105

Query: 57  A 57
            
Sbjct: 106 V 106

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPNPAIFRS 61
           + T      + G +  L I     +DFG Y+C ATN +G       L L+  P+      
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS----- 198

Query: 62  HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
            P G         +  +++         P+  +++  +++       + +    T 
Sbjct: 199 -PYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
                 R  ++ +    +L I+ V  SD G Y CEA + +G H+  + L  +     F S
Sbjct: 47  DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-YAPKFIS 105

Query: 62  HPQ 64
           +  
Sbjct: 106 NQT 108

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 19/48 (39%), Positives = 22/48 (45%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           L T+ R  + T   + T  I  V ASD GNYS    N  GK  A   L
Sbjct: 55  LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 10/50 (20%), Positives = 25/50 (50%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L + ++  + +     ++ I  V ++D G Y C+A+N +G +     ++
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
          +       M    +  TL + KV   D G Y+C A+N  GK    A L +   P
Sbjct: 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           ++ + +  M    S   L +  +   D G+Y+CEA N  G   +   L  K  P +FR  
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKK 198

Query: 63  PQ 64
           P 
Sbjct: 199 PH 200

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE 49
           +  ++R  +   G  H L+I  V   D G+Y+           A L 
Sbjct: 47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 48.8 bits (117), Expect = 6e-09
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
              R   E  G    L I      D G Y+C+A N  G     A LE+ G+
Sbjct: 48 PDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 49.0 bits (117), Expect = 6e-09
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 3   LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
           L  ++    +   + H      L +      + G+Y+  A N  GK    +       P 
Sbjct: 42  LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101

Query: 58  I 58
           I
Sbjct: 102 I 102

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 50.9 bits (122), Expect = 9e-09
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRS 61
                +++ TR     +    V   D G Y   A N  G       L+++  P+P     
Sbjct: 147 NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP----- 201

Query: 62  HPQG-----RLPNSYNITWMVSSYT---PLEEFKIKYRKIPGNE 97
            P+G        +S N+TW   +      +  + ++        
Sbjct: 202 -PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLP 68
           RI E +G  H L+I  V   D   Y   ATN  G       L  +  PA           
Sbjct: 53  RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-VPAKIHLPKTLEGM 111

Query: 69  NSY 71
            + 
Sbjct: 112 GAV 114

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
           L ++ +  +E  G    L++++   ++ G YSCEA          L+++G+ 
Sbjct: 51  LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS--FRLQVAGQC 100

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
             ++ R  + +L++  VV SD GNY+C   N  G  +    L++  +    P +    P 
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
            +   +  I E+  +   L +  V   D G Y C ATN +G      +L + G    
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          LE +E+  +        L ++ +   D G Y C+  N  G+  +Y EL 
Sbjct: 43 LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI--F 59
           +  + RI E +G  H L+I  V   D   Y   ATN  G     A LE+       +   
Sbjct: 48  DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT 107

Query: 60  RSHPQ 64
                
Sbjct: 108 LEGMG 112

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 2   RLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            ++     +++ TR     +    V   D G Y   A N  G  +  +EL 
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
          L+ + +          TL I      D G Y    TN  G+
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
          +  +++  +   G+   L+IR     D G Y+CE         A L +  K + 
Sbjct: 48 IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKST--ASLHVEEKASG 99

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +  + +  + T G+RHTL +R+V  +D G+Y+  A +
Sbjct: 48 ISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGS 84

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             L      +++       L IR+V   D G Y+C+A + +G     A+  + G    
Sbjct: 49  ETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           +  +   +++   +   L++  V   D G Y CE  +        + ++  P   I  S 
Sbjct: 53  VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESA--SFTVTVTEPP-VRIIYSG 109

Query: 63  P 63
           P
Sbjct: 110 P 110

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
           L  +    +   G +H L++        G  S +A N
Sbjct: 44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN 55
          ++ ++R  +  +G  H L+I   +  D G+Y            A + +   P+
Sbjct: 46 VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
               +++ +    H+L+   V ASD G Y+C A N  G+    ++L 
Sbjct: 48 SDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
             I        +L        D GNY+  A NP G+      L +    + 
Sbjct: 56  YTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 47.0 bits (112), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +E +E  +++  G +H L++ +    D G + C    
Sbjct: 50 VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG 86

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN--PAIFRSHPQ 64
             ++ R  + +L++  VV SD GNY+C   N  G  +    L++  +    P +    P 
Sbjct: 171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 230

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY 47
           L  +ER ++        L +      D G YSC           +
Sbjct: 49 GLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
           T      L +  V   D G Y+C A N +G   H A+L 
Sbjct: 286 TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 4e-08
 Identities = 10/41 (24%), Positives = 14/41 (34%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
          +    +  +        L I K   SD G Y+C   N  G 
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 46.5 bits (111), Expect = 5e-08
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 1  MRLETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
          +++E ++R        +   L+IR V   D  +   +A N  G+    A+L +  K
Sbjct: 44 VKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 2   RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNP 56
           +L   ++RI          TL I      D G Y C  T   G        +++  K   
Sbjct: 44  KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-- 101

Query: 57  AIFRSHPQ 64
            +F++ P 
Sbjct: 102 -MFKNAPT 108

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           + L IR +  +D G Y CE          + ++ 
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
              + R    +L++  VV SD GNY+C   N  G   H  +L+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 10/63 (15%), Positives = 16/63 (25%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
              +    + + GS   L        + G Y C          A + L  K     +  
Sbjct: 35 DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNV 94

Query: 62 HPQ 64
            Q
Sbjct: 95 LAQ 97

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 2   RLETTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF 59
           +L   ++            TL + +V     GNYSC A+N  GKH   +      +    
Sbjct: 227 KLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN- 285

Query: 60  RSHPQ 64
             H  
Sbjct: 286 SHHHH 290

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 45.8 bits (109), Expect = 8e-08
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA 57
          +L  + R    TR +   + ++  V +D G Y+C  ++P G    Y  ++      
Sbjct: 42 QLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 8e-08
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
           S   L I  V   D G Y C   N        A L+L G+ +P + R   Q
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQ 437

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 2   RLETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           ++   +R  +    + +      L I  V A+D G Y C A + +G   H A L + G P
Sbjct: 469 KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 3   LETTERRIMETRGSRH--TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
               +  ++  R  +   TL+I+  V  D G Y C   N +G       L+    P   +
Sbjct: 289 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAK 347

Query: 61  SHPQ 64
             P 
Sbjct: 348 IDPP 351

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
            L I  V AS  GN++C A N  G       L +   P    +   P 
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP---RWILEPT 722

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
                I    G   TL +  +  ++ G Y CEA N +G 
Sbjct: 763 KKSDNIRVEEG---TLHVDNIQKTNEGYYLCEAINGIGS 798

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 14/113 (12%)

Query: 3   LETTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMG---KHRAYLELSGKPNPAI 58
           L    ++ +   G   TL+I  V   SD   Y+C A N  G   +    +++   P    
Sbjct: 567 LPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIP 623

Query: 59  FRSHPQGRLPN-SYNITWMVSSY-TPLEEFKIKYRKIPGNEPSPMSNQLTGTN 109
           F              +   V     PL    I +      +       +T + 
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLN---IDWTL--DGQAISEDLGITTSR 671

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 14/125 (11%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMG---KHRAYLELSGKPNPAIF 59
           E   + ++   G    L IR+V   D + +Y C   + +    +  A         P   
Sbjct: 188 EYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244

Query: 60  RSHPQGRLPNSYNITWMVSSYTPLE-------EFKIKYRKIPGNEPSPMSNQLTGTNQYQ 112
                  L      T+  SS   L            ++ K         +  L    +  
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV 304

Query: 113 NRRLV 117
           +  L+
Sbjct: 305 SGTLI 309

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.8 bits (109), Expect = 9e-08
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           L    R  ++  G+R  L I  +  +D G YSC       +  A L +   P      S 
Sbjct: 47  LRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ--ERTSATLTVRALPARFTEGSG 104

Query: 63  PQ 64
           P 
Sbjct: 105 PS 106

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 3   LETTER-RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF-R 60
           L   E   I    G  H L +R++   D G    EA    G  RA   L     P++F R
Sbjct: 54  LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSR 109

Query: 61  SHPQ 64
           S P 
Sbjct: 110 SGPS 113

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKPNPAIF 59
           ++  + R    R +   L I  V  SD G Y C A N +G   +    L++  KP     
Sbjct: 48  IKLFDTRY-SIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK---I 103

Query: 60  RSHPQ 64
              P 
Sbjct: 104 TRPPI 108

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLE 49
           L    R  +   G   +L I  V   D G Y C A N +G        LE
Sbjct: 141 LRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 9/36 (25%), Positives = 16/36 (44%)

Query: 4  ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
           +  + I E+ G++ TL I +   +D   Y C    
Sbjct: 58 MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG 93

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 12/109 (11%), Positives = 29/109 (26%), Gaps = 14/109 (12%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
            L       ++ RG   +++I K+  +  G Y     +    +     +S +        
Sbjct: 88  SLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLR 146

Query: 62  HPQGRLPNS-------------YNITWMVSSYTPLEEFKIKYRKIPGNE 97
            P  R   +               + W++         +     +   E
Sbjct: 147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 42.7 bits (100), Expect = 7e-06
 Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 2/41 (4%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
           + +++          G Y   A N   +      L +    
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 3   LETTERRIMETRGSRH------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
           LE      M T  +           +  V  +D G Y+C ++    +  A + +  K 
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKG 325

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK 53
           +   E+   +      TL+I +    D G Y     +  GK ++ L+L  +
Sbjct: 158 ISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 3   LETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +    +  M          + + K+   D G Y+ +  +    + + + L G     + +
Sbjct: 44  IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK 103

Query: 61  SHPQGRLP 68
                R  
Sbjct: 104 EAEFQRQE 111

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            T R  + T        +R+   SD G Y         K  A + + 
Sbjct: 66  DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +E  E+ I++  GS   L +R ++ SD G Y C ATN  G+      L 
Sbjct: 139 IEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 8/25 (32%), Positives = 10/25 (40%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMG 42
          + L I  +  SD G Y CE      
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEAR 81

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            L+  +     ++     L I     +  G+Y CE +       +   L
Sbjct: 56  HLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 6/58 (10%), Positives = 16/58 (27%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
            +           +++I K+  +  G Y     +    +     +S +         P
Sbjct: 91  CQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 10/77 (12%), Positives = 16/77 (20%), Gaps = 21/77 (27%)

Query: 17  RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------------------SGKPN 55
            +++          G Y   A N   +      L                      G P 
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPL 436

Query: 56  PAIFRSHPQGRLPNSYN 72
           P+        + PN   
Sbjct: 437 PSWTWKKCSDKSPNCTE 453

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
              +  V  +D G Y+C ++    +  A + +  K 
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKG 325

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          +  + + I E +G +  L I     +D   Y   A +
Sbjct: 48 IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGD 84

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 19/62 (30%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           + +                L +  V   D G YSC A+N +G   A +      +     
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287

Query: 61  SH 62
            H
Sbjct: 288 HH 289

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 9/63 (14%), Positives = 15/63 (23%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
              +    ++      TL  R     + G Y C            + L  K     +  
Sbjct: 35 DGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNL 94

Query: 62 HPQ 64
            Q
Sbjct: 95 LAQ 97

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 3   LETTERRIMETRGSRH-------TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           + T  +       S +        L+   + ASD G YSCEA N  G       + 
Sbjct: 149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             +  + V   D G Y+C  +   G       ++L     P    +   
Sbjct: 68  TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNI 115

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 5   TTERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLEL 50
           +  R  + +   R  L I  + + +D G Y C  T+  G  +A + L
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            + E          +      +G YSC          A ++L G P     ++   
Sbjct: 39 VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMG-TANIQLHGPP---RVKAVKS 91

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK 43
           +I        +L I +V   D   Y+C+A N +G+
Sbjct: 89  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRS 61
            +  RI + R     L I     +D G Y C ATN  G      A L +  +     F  
Sbjct: 153 ASNGRIKQLRS--GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSI 210

Query: 62  HPQ 64
            P 
Sbjct: 211 LPM 213

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 7/65 (10%)

Query: 7   ERRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYL----ELSGKPNPAIF 59
              I     +   L I+ +    D   Y C A N +G+    A L    E          
Sbjct: 52  FETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111

Query: 60  RSHPQ 64
              PQ
Sbjct: 112 DMGPQ 116

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
              ++      D  NY+C A + +G     A + +   P    
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGT 297

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 2   RLETTERRIMETR-GSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLELS------GK 53
           ++      ++E   GS   L I+ +    D   Y C A+N +G+      L+        
Sbjct: 46  KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIP 105

Query: 54  PNPAIFRSHPQ 64
                    PQ
Sbjct: 106 RGFPTIDMGPQ 116

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP 54
               R       S   L I +   SD G Y C ATN  G      A L + G  
Sbjct: 153 NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L+IR V         C  TN +G  +A L + 
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           +    +   L++     S  GNY C       +      LS    P     H +
Sbjct: 60  IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSE 112

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 5/42 (11%), Positives = 10/42 (23%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
                + E  GS    +   +        +C   N   +   
Sbjct: 151 ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 2   RLETTERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAI 58
           +L   ++RI          TL I      D G Y C  T   G +  A + +       +
Sbjct: 44  KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-M 102

Query: 59  FRSHPQ 64
           F++ P 
Sbjct: 103 FKNAPT 108

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           E  E+ I     S   L IR V  +D   Y C A N  G+  A + L 
Sbjct: 242 EDDEKHIFSDDSS--ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRS 61
           S + L IR +  +D G Y CE               + ++  P     +S
Sbjct: 153 SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQS 202

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQ 64
              +  +     L ++ V  SD G Y C+  +          +L + G P    F   P+
Sbjct: 50  YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPK 106

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 15 GSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELS 51
               L++ ++   D G YSC AT+     +    + +S
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           +R       +  S  G Y CEATNP+G     +E++     A+   H  
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 3   LETTERRIMETRGSRH--TLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNPAIF 59
           L     R+   R S    T+ + ++   D G Y CE  T P G   + L L+    P  +
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 60  RSHPQ 64
               Q
Sbjct: 135 IEGTQ 139

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.2 bits (105), Expect = 4e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
          L  + +      G    L I  +  +D   Y+C+      + RA L + G+ 
Sbjct: 48 LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDIGQ--AQSRAQLLVQGRR 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 43.9 bits (104), Expect = 5e-07
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
                   L I+  +  D G Y+C A N +G+    A++ 
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 10/62 (16%), Positives = 14/62 (22%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
                             L +   +  D G Y C   N     +  +EL    N   F  
Sbjct: 65  ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP 124

Query: 62  HP 63
             
Sbjct: 125 FI 126

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L+    + +  RG+   L++  V   D G Y C  T      +  +  S
Sbjct: 166 LDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)

Query: 2   RLETTERRIMETRG---SRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLEL 50
           R+    R+             L+   V   D   ++ C   N +        +
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL---------SGK 53
           +   +RR +        L I  V ASD GNYSC  ++P      + +          + K
Sbjct: 53  ITMDKRRFVSQTN--GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK 110

Query: 54  PNPAIFRSHPQ 64
           P PA      +
Sbjct: 111 PYPADIVVQFK 121

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYL 48
           S   L I  +   D G Y CEA N  GK  H+A +
Sbjct: 163 SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 43.9 bits (104), Expect = 5e-07
 Identities = 9/38 (23%), Positives = 13/38 (34%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
                R  +   G +H L+I     +D   YS   T 
Sbjct: 48 IPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHP 63
           +R     R S   L+ +  +  D G Y+CE  N +GK   H   L +   P    +   P
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK---YEQKP 315

Query: 64  Q 64
           +
Sbjct: 316 E 316

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 42.2 bits (99), Expect = 9e-06
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 9/67 (13%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
              +     + +  G   +L+  +  ASD G+Y C A  P G           +      
Sbjct: 48  YNWQEHNAALRKDEG---SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIA-- 102

Query: 58  IFRSHPQ 64
              +   
Sbjct: 103 -SPAKTH 108

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +   L+I+ V   D G Y C ATN  G       + 
Sbjct: 358 TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNS 70
            L + +    + GNY+  A NP G+            P    F  +P+  +P++
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP----FEFNPEDPIPDT 113

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 9/67 (13%), Positives = 16/67 (23%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           +   +  +       +  L        D G+Y C   N     R  +      N      
Sbjct: 46  KTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105

Query: 62  HPQGRLP 68
           + Q    
Sbjct: 106 NAQAIFK 112

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLEL 50
                             L I ++ +  +   ++C A N  G   AY++L
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
             G +  L++  V     GNY+C A+    
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMG---KHRAYLELSGKP---NPAIFRSHPQ 64
            L I ++   D G Y C A NP      + A + +   P       F   P 
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           ++   ++     GS   L+I  V   D G Y+C  T       A  EL+    P  F +H
Sbjct: 262 IQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVL-VPPWFLNH 318

Query: 63  PQ 64
           P 
Sbjct: 319 PS 320

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            +  ++   +    +   L I  VV SD G Y C A N  G  ++  +L 
Sbjct: 352 VVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVAS-----DFGNYSCEATNPMGK----HRAYLELS 51
           + L   +R+     GS   L+I+ ++ S     D G Y CEA+           A + ++
Sbjct: 63  LALGMDDRKQQLPNGS---LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119

Query: 52  GKPNPAIFRSHPQ 64
           G      F S  +
Sbjct: 120 GPLR---FLSQTE 129

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 44.2 bits (104), Expect = 7e-07
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            L+  E     +R     + I K   +  GNY CE T          +L
Sbjct: 59  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             +  +   S   L I+ V   D G Y CEA N  G+  ++  + +  +P+   +     
Sbjct: 246 GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD---WLDVIT 302

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L +  R  +    S   L   K+V  D G Y C A N  G   A  EL+
Sbjct: 335 LASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKPN 55
           +    RR +        L I K  ASD GNYSC AT+ +           + L L+ +  
Sbjct: 145 IPADGRRFVSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202

Query: 56  ----PAIFRSHPQ 64
               P+I    P 
Sbjct: 203 RQYAPSIKAKFPA 215

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPA 57
             L+  + RI    G    LMI     SD G Y C  TN +G+     A L +  +P+  
Sbjct: 151 SPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS-- 205

Query: 58  IFRSHPQ 64
            F     
Sbjct: 206 -FVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVA--SDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           +    R++   GS   L I        D G Y C A N +G+   H A LE++       
Sbjct: 56  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--RDD 113

Query: 59  FRSHPQ 64
           FR +P 
Sbjct: 114 FRQNPS 119

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
           ++ +  R     G    L I      D G Y C A N MG        L +  +    + 
Sbjct: 151 VDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR---VG 204

Query: 60  RSHPQ 64
             H  
Sbjct: 205 TKHHH 209

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 8/65 (12%)

Query: 8   RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK---HRAYLEL----SGKPNPAIF 59
             ++E  G    L I  V    D   Y C A N +G      A L +           + 
Sbjct: 54  YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVI 113

Query: 60  RSHPQ 64
              P 
Sbjct: 114 TQGPG 118

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 18/75 (24%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKP--------------NPAIFRS 61
            L I  +  SD G Y C              Y+ L G P               P     
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128

Query: 62  HPQGRLPNSYNITWM 76
             QG  P   ++ W+
Sbjct: 129 QAQGP-PEPVDLLWL 142

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           +  + +   +    G    L  +KV   D G Y+C A          +EL
Sbjct: 287 VLSQGSNGSVSVRNG---DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAI 58
           + + T + RI +       L IR     D G Y+C A+ P G+    AY+E+     P  
Sbjct: 47  VLVSTQDSRIKQLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQ 104

Query: 59  F 59
            
Sbjct: 105 P 105

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRSHPQ 64
            E +    TL I  V  SD G Y+C A++ +   +   ++ +  KP  A       
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
            L      +++       L IR+V   D G Y+C+A + +G     A+  + G    
Sbjct: 706 TLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 19/59 (32%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            E           TL I KV+ +D G Y C           Y+ +    +P I     Q
Sbjct: 74  VEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQ 132

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 3/66 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN-PAI 58
             +        +      + ++     D G+Y C A +     +H    +L+        
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668

Query: 59  FRSHPQ 64
              + +
Sbjct: 669 ITGNLE 674

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFRS 61
           H L I +V   D GNY+   TNP+ K +    + L     P I   
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEK 426

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           S+    I   + S  G   CEA      +++ + +       I+ 
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKP 54
               +  +    ++    +    A+    Y CEA N +G+        ++  P
Sbjct: 499 VNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L IR V  SD G Y C  +N     +    L 
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             L I  V   D G Y C A+N MG   H   + +   P    +   P+
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY---WLDEPK 320

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  T++ R    S    Y C  +N  G   A   +S
Sbjct: 365 AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 23/106 (21%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVA----SDFGNYSCEATNPMGK---HRAYLELSGKP 54
                +   +  R    TL+I            G Y C A N  G    +R  L++S  P
Sbjct: 57  FFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSP 116

Query: 55  ---------------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
                           P   + +P   LP S  I WM SS  P+ +
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLP-SPVIFWMSSSMEPITQ 161

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 7/66 (10%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMG---KHRAYLELSGKPNPAI 58
           +   +R      G    L    V+  D   +YSC A        + +    L       +
Sbjct: 159 ITQDKRVSQGHNG---DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215

Query: 59  FRSHPQ 64
               P 
Sbjct: 216 AERTPS 221

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           L   +R  +   G+R  L IR +VA D G Y C      GK R    L+ +  P+   S
Sbjct: 58  LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPSS 112

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRS 61
               R+    G    L+I  V   D GNY C A N +G      A L +  K        
Sbjct: 159 GASSRVRIVDG--GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

Query: 62  H 62
           H
Sbjct: 217 H 217

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 4   ETTERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIF 59
           E    R+    G+      ++     D G Y C A N +G+     A L+++   +   F
Sbjct: 54  EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD--F 111

Query: 60  RSHPQ 64
           R  P+
Sbjct: 112 RVEPK 116

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           T+  +      R  L I      D G Y+C  T  +  H+ 
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 19 TLMIRKVVASDFGNYSCEATNPMGKHRA 46
           L +  +   D G Y C   +  G    
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETD 79

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 2  RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
          +L  + R    TR +   + +R  + +D G Y+C  ++P G    Y  ++
Sbjct: 48 QLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
              S   L I      D G+Y C A N  GK   +  L    +PN   +     
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN---WVQIIN 303

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIF 59
            +   R + +  G    L I KV  SD GNY+C  TN +  H+       L  + +  + 
Sbjct: 145 YQDNRRFVSQETG---NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMG 201

Query: 60  RSHPQGRLPNSYNIT 74
              P+  +     + 
Sbjct: 202 EYEPKIEVQFPETVP 216

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           L T +R  +     + TL I  V  SD G Y C A N  G   +  ELS
Sbjct: 336 LLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 23/101 (22%)

Query: 4   ETTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGK---HRAYLELSGKP----- 54
              + R     GS   L+I       D G Y C ATN  G      A L+ +        
Sbjct: 51  IGMDFRYSVVDGS---LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTR 107

Query: 55  ----------NPAIFRSHPQGRLPNSYNITWMVSSYTPLEE 85
                        +    P        +  W+ + Y   ++
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSG-ELSYAWIFNEYPSYQD 147

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 3  LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
          L   ++  +   G+   L++R +   D G YSC   +      A L ++  P+ 
Sbjct: 48 LRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQTT--SATLTVTALPSG 99

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
            +    TL+I+  V  D G Y C   N +G       L+    P   +  P 
Sbjct: 265 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA-PLSAKIDPP 315

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLEL 50
           S   L I  V   D G Y C   N        A L+L
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 27/114 (23%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDF------GNYSCEATNPMGK---HRAYLELSGKP 54
           +    R + + G    L+     A D+        Y+C A N  G       ++      
Sbjct: 48  DVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ 104

Query: 55  --------------NPAIFRSHPQGRLPN-SYNITWMVSSYTPLEEFKIKYRKI 93
                         N A+ +      + +    ++W                K 
Sbjct: 105 YYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 158

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASD-FGNYSCEATNPMGKHR 45
           E   + ++   G    L IR+V   D + +Y C   + +    
Sbjct: 153 EYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGET 192

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNP 56
           T   I    G   TL I  +V +DF   Y+C A N  G     + L  + + 
Sbjct: 64  TVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATN 39
          R   +  G RH L+   VV  D G Y      
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 3   LETTERRIMETRGSRH-----TLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKPN 55
            +  E+      G  +     TL I     +D G + C A N  G       LE+  K  
Sbjct: 253 TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312

Query: 56  PAIFRSHPQ 64
             IF     
Sbjct: 313 INIFPMINT 321

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 11/49 (22%), Positives = 13/49 (26%), Gaps = 5/49 (10%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQG 65
              I        G   C+A N +GK          G     I   HP  
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI---HPHH 520

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
                ++  +  K  A++ G Y+C   + +     Y+ +      
Sbjct: 74  TNENKQNEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVRDPAKL 117

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             L + ++  ++ G Y+   +N          + 
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            R        ++ +     L+   V A D G Y C+A N  G        
Sbjct: 154 TRAFMNSSFTIDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 4/68 (5%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQGRLPNSYNITW- 75
            +    V   D G Y+C  +   G+      + L+    P+         +         
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125

Query: 76  -MVSSYTP 82
                 +P
Sbjct: 126 CSEHDGSP 133

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP 63
           ++ ++ V  SD G Y+C       + R  + L    +       P
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIF 59
           R +     + +T  +  +L+++ V  +D G Y+CE          +  +EL   P     
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD 127

Query: 60  RSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQY 111
                G   ++  +   + S       K+ +    G+     +     +N  
Sbjct: 128 LRVRVG---DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             + ++   +   G YSC   N +G  +  L L 
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS 61
           R+  T   +     S   + +  +  SD G Y C+     G       L+    P+  R 
Sbjct: 71  RVHFTSNDVKSGDAS---INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC 127

Query: 62  HPQGRLPNSYNITW--MVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQ 110
              G      +          +     + +++K+  ++  P       T+ 
Sbjct: 128 FVDGSEEIGNDFKLKCEPKEGSL--PLQFEWQKLSDSQTMPTPWLAEMTSP 176

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFR 60
            L  + R  +       TL +  V  +D   Y C   N +  +R+  + L     P    
Sbjct: 506 SLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563

Query: 61  SHPQ 64
             P 
Sbjct: 564 ISPP 567

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELSGKPNPAIFR 60
            L  + R  +       TL +  V  +D G Y C   N +   H   + L+    P    
Sbjct: 328 SLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385

Query: 61  SHPQ 64
             P 
Sbjct: 386 ISPS 389

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
           S   L I  +  ++ G+Y+C+A N            ++    P        
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 2/49 (4%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
             L I  +   + G Y+C+A N            ++             
Sbjct: 426 QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN 474

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAI 58
            L  + R  +       TL +  V  +D  +Y CE  NP+   R     L +   P+   
Sbjct: 150 SLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207

Query: 59  FRSHPQ 64
                 
Sbjct: 208 ISPLNT 213

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L I K+  ++ G Y+C  +N        +  S
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKS 637

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.0 bits (100), Expect = 4e-06
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
             L+T+   + ++   R  L +R    S  G   C  +      +  ++L     P    
Sbjct: 43  RGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLT 101

Query: 61  SHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
             P   +P    +       TP++   + +  + G +    +  L 
Sbjct: 102 VSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALG 147

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
             +  R       + TL I      D G + C A N  G       L
Sbjct: 238 HNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
           E +    TL I  V  SD G Y+C A++ +   K+  ++ +   P
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 11/56 (19%), Positives = 18/56 (32%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP 56
                              L + +    + GNY+  A NP G+  A +  +   NP
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 3/57 (5%)

Query: 15  GSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAIFRSHPQGRLP 68
           G+   L+   V   D G Y C   N         + L++   P              
Sbjct: 62  GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFRSHPQGR 66
           T  ++   M+  V     G Y C   N      +  +E+       +   HP  +
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL--GHPDNK 212

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           +     E RI +    +  L  R  + +D GNY+C   N     +    L      + F 
Sbjct: 65  INFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN 121

Query: 61  S 61
           S
Sbjct: 122 S 122

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.2 bits (98), Expect = 9e-06
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNPAIFR 60
           E+      E       L I+KV + D   +Y C A +  G+     ++  K     + 
Sbjct: 282 ESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYT 339

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH 62
           TL    V+ SD G Y+C  TN  G   A   L+          H
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHH 451

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 24/103 (23%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSGKPNPAIFRSHP 63
           ++ +      TL       +  GN +       GK     +   +  +            
Sbjct: 248 QMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQK-------- 299

Query: 64  QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLT 106
                   N+T  V   T     K+       N+ + +S +  
Sbjct: 300 --------NLTCEVWGPTSP---KLMLSLKLENKEAKVSKREK 331

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 13/108 (12%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 16  SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS---GKPNPAIFRSHPQGRLPNSYN 72
              TL + ++   D G ++C       K    +++     +   +I       ++  S+ 
Sbjct: 140 GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFP 199

Query: 73  ITWMVSSYTPLEEFKIKYRKIPGNEP----SPMSNQLTGTNQYQNRRL 116
           + + V   T   E   +  +   ++        + +++     Q+ +L
Sbjct: 200 LAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKL 247

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 4   ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKPNPAI 58
           +  + R          L+I+ +   D   Y CE  +   + +     L+   +  +
Sbjct: 53  DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 108

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 6  TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLE 49
            R  ++ +G   TL I+ +  SD G Y+C AT+  G+    A L+
Sbjct: 53 DPRATIQEQG---TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
          T  ++   M+  V     G Y C   N      +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAI 58
            + R          L+I+ +   D   Y CE  +   + +     L+   +  +
Sbjct: 56  ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL 109

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 6/34 (17%), Positives = 14/34 (41%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            TL + ++   D G ++C       K    +++ 
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
            T+ I  +V  D G Y C A+N   ++      
Sbjct: 90  STISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNP 56
           TL    V   D G Y+C  +N +G   A   L  +G  + 
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSGKPNPAIFRSHPQ 64
               S     I K  A D G Y C        K  A +E+   P+      H +
Sbjct: 50  RKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPD---ITGHKR 100

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 8   RRIMETRGSRHTLMIRKV-VASDFGNYSCEATNPMGK--HRAYLE 49
           R  +  + +   L I  + +  D G Y C ATN +G       L 
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 9/39 (23%), Positives = 12/39 (30%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
             + +  R +     I      D G Y CEA    G   
Sbjct: 212 GSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 2/58 (3%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNPAIFRSHPQ 64
           +  +       L I K   S  G Y C              + +       +  +   
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVT 179

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 12  ETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAYLELSGKP 54
           E +    TL I  V  SD G Y+C A++ +   K+  ++ +  KP
Sbjct: 68  EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 5   TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
             E ++  +R    +  +      D G Y C      G   +         P +  + PQ
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ 269

Query: 65  --GRLPNSYNITWMVSSYT---PLEEFKIKYRKIPGN 96
                     I    +S     P+   +++Y    G+
Sbjct: 270 LASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS 306

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA 46
           L+ TER  +    S   L I  +   D G Y CE +NP+   R+
Sbjct: 150 LQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRS 191

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSGKPNPAIFRSHPQGRL 67
           +++    ++ ++ +  V   D G Y C   ++ +      + +         R +P    
Sbjct: 57  QLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCR-YPSHWR 115

Query: 68  PNSY 71
           P  +
Sbjct: 116 PLEH 119

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 38.7 bits (90), Expect = 9e-05
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
             ++     H + I      D G Y C        + 
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
           +  +      T  I +   S  G+Y C          
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFS 161

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 7/41 (17%), Positives = 13/41 (31%)

Query: 18  HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
             L+I      D G Y C       + +  + +S      +
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 12  ETRGSRHTLMIRKVVASDFGN-YSCEATNPMGKHRAYLEL 50
               +  TL    V     GN Y+C   N          +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 3   LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           L+ + + +    G+ + L I +V   D G Y+  A N  G     + L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQG 65
            I  T     +++I ++  SD G Y C+A +    ++   +L               
Sbjct: 176 DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLR 232

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 10/128 (7%)

Query: 2   RLETTERRIMETRGSRH---TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI 58
           R    E RI+     +    +++I  +   D G Y C A +           + +     
Sbjct: 271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE 330

Query: 59  FRSHPQGRLPNSYNITWMVS-----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQN 113
             + P+   P         S      Y   E   IKY  +     +     L  +  +  
Sbjct: 331 ESTIPRS--PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVK 388

Query: 114 RRLVRKIT 121
            +   +++
Sbjct: 389 AQYEGRLS 396

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 14/53 (26%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP 54
           R    E     +      L I KVV  D G Y  E             +  + 
Sbjct: 64  RFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 4   ETTERRIMETRGSRHTLMI--RKVVASDFGNYSCEATNPMGK---HRAYLELSGKPNPAI 58
           +    R++   GS   L I   +    D G Y C A N +G+   H A LE++   +   
Sbjct: 56  DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH--- 112

Query: 59  FRSH 62
              H
Sbjct: 113 HHHH 116

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 6/37 (16%), Positives = 9/37 (24%)

Query: 9   RIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR 45
           +  +         I K    D G+Y C          
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS 164

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 13  TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELSGKPNPAIFRS 61
             G    L ++ +  +D G Y C   T P G +   + L    +      
Sbjct: 66  APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHG 115

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 8/66 (12%)

Query: 7   ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--------AYLELSGKPNPAI 58
             R      +  TL +  V   D G Y C+      +                  P+  +
Sbjct: 79  LGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV 138

Query: 59  FRSHPQ 64
             S  +
Sbjct: 139 HVSTAE 144

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 36.8 bits (84), Expect = 6e-04
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRA 46
            L+IR    +D G   CE     G+  A
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDA 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           TL +R     D G Y C A N  G       L
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 22  IRKVVASDFGNYSCEATNPMGKHRAYLELS 51
              V     G Y C A +  G+    + ++
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVN 261

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 19  TLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
           ++ +  +  SD G Y C+     G     + L
Sbjct: 90  SINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.47
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.4
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.27
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.23
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.15
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.13
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.1
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.06
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.0
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.99
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.99
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.98
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.98
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.98
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.97
1he7_A	126	High affinity nerve growth factor receptor; transf	98.97
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.95
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.95
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.94
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.94
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.93
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.92
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.91
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.9
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.9
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.9
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.89
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.89
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.89
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.88
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.88
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.88
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.88
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.88
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.88
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.87
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.87
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.87
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.86
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.85
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.84
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.84
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.83
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.83
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.83
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.81
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.81
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.81
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.81
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.8
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.8
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.79
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.79
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.79
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.79
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.78
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.78
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.77
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.77
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.77
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.77
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.77
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.76
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.76
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.76
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.75
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.75
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.75
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.75
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.74
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.74
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.74
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.73
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.73
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.73
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.72
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.72
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.72
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.71
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.71
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.71
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.7
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.7
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.7
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.69
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.69
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.69
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.69
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.69
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.69
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.69
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.69
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.69
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.68
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.68
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.68
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.68
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.67
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.67
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.67
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.67
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.66
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.66
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.65
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.64
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.64
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.64
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.64
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.64
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.64
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.63
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.63
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.62
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.62
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.62
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.62
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.62
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.61
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.61
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.61
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.61
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.61
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.61
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.61
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.61
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.6
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.6
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.6
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.6
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.6
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.59
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.59
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.59
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.59
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.59
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.59
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.58
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.58
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	98.58
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.58
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.58
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.58
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.58
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.57
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.57
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.57
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.57
3khq_A	133	B-cell antigen receptor complex-associated protei	98.57
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.56
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.56
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.55
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.54
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.53
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.53
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.53
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.53
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.52
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.52
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.52
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.51
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.51
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.51
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.5
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.5
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.5
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.5
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.5
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.5
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.5
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.5
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.5
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.49
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.49
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.48
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.48
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.48
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.47
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.47
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.46
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.46
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.46
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.46
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.46
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.45
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.45
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.45
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.45
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.45
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.45
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.45
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.44
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.44
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.44
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.44
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.44
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.44
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.43
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.43
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.43
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.43
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.42
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.42
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.42
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.42
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.42
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.41
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.41
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.41
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.41
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.4
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.4
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.4
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.4
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.4
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.39
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.39
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.38
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.38
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.38
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.38
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.38
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.38
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.37
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.37
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.37
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.37
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.37
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.36
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.36
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.36
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.36
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.36
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.35
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.35
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.35
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.35
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.34
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.34
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.34
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.33
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.33
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.31
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.31
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.31
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.3
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.3
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.29
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.29
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.29
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.28
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.28
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.28
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.26
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.26
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.26
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.26
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.25
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.25
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.25
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.24
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.24
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.24
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.23
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.23
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.23
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.23
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	98.23
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.22
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.22
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.22
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.21
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.21
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.21
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.2
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.2
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.18
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.18
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.17
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.17
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.17
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.14
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.13
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.13
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.13
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.13
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.12
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.12
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.12
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.12
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.11
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.11
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.1
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.09
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.09
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.09
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.09
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.09
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.08
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.08
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.08
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.08
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.08
1xt5_A	135	Variable region-containing chitin-binding protein	98.08
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.07
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.06
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.06
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.06
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.04
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.03
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.03
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.03
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.03
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.02
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	98.02
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.02
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.02
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.02
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	98.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.01
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.0
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.0
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	97.99
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	97.99
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.99
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.99
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	97.99
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	97.99
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	97.98
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.98
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	97.97
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	97.97
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	97.97
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.97
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	97.96
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.96
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.96
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	97.95
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	97.94
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.93
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.92
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.92
2ens_A	96	Advanced glycosylation END product-specific recept	97.92
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	97.92
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	97.9
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.9
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.89
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.89
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.89
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.89
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	97.88
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	97.88
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	97.87
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.87
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.87
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	97.86
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	97.86
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	97.86
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	97.85
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	97.85
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.84
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	97.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	97.84
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	97.83
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.83
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	97.82
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	97.82
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	97.82
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	97.82
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	97.82
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.82
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	97.81
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	97.81
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	97.81
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	97.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.8
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.79
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	97.79
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	97.79
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.78
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	97.78
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	97.77
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	97.77
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.76
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	97.76
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	97.76
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	97.75
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	97.75
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.94
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	97.74
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	97.74
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.74
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.73
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.73
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	97.73
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	97.72
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	97.72
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	97.72
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	97.72
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.72
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	97.72
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	97.72
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.71
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.71
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	97.71
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.7
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.69
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.69
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.69
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	97.69
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	97.68
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.68
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	97.68
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.68
1p4b_L	135	Antibody variable light chain; FV antibody, antige	97.68
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	97.66
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.65
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	97.64
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	97.64
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	97.64
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	97.64
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	97.64
3b9v_A	120	Heavy chain variable domain; antibody engineering,	97.64
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.63
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	97.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	97.63
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	97.63
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	97.62
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	97.62
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	97.61
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	97.61
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	97.6
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	96.76
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	97.59
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	97.58
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	97.58
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.57
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.57
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.57
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	97.53
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.53
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	97.53
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	97.52
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	97.51
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	97.51
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	97.51
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	97.51
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	97.51
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	97.51
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	97.5
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	97.5
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.49
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	97.49
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.49
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	97.48
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	97.48
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	97.47
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	97.47
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	97.46
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	97.46
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	97.45
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	97.44
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	97.44
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	97.43
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	97.43
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	97.42

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.47  E-value=6.4e-13  Score=92.94  Aligned_cols=97  Identities=18%  Similarity=0.264  Sum_probs=76.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeC---CCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS---SYT   81 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~   81 (123)
                      .|+.+...+..+.|.|.+++..|+|.|+|.|.|.+|.....+.|.  ..|.+|.....  .....++.|.|..+   ++.
T Consensus        65 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             CSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSS
T ss_pred             ccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEE--EEecceEEEEEecCCccCCC
Confidence            678887767789999999999999999999999999998877665  46777655432  23467899999853   567


Q ss_pred             CCcceEEEeEEcCCCCCCceeeeecc
Q psy17207         82 PLEEFKIKYRKIPGNEPSPMSNQLTG  107 (123)
Q Consensus        82 pi~~y~v~yr~~~~~~~~w~~~~~~~  107 (123)
                      |+..|.|+|+....  ..|.......
T Consensus       143 pi~~y~v~~~~~~~--~~w~~~~~~~  166 (215)
T 3mtr_A          143 PILKYKAEWRAVGE--EVWHSKWYDA  166 (215)
T ss_dssp             CEEEEEEEEEETTC--CCCEEEEEEH
T ss_pred             ceEEEEEEEEECCC--Cccccccccc
Confidence            99999999998653  5788765443

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.40  E-value=1.1e-11  Score=90.10  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcc-cCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS   78 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~   78 (123)
                      +|..+.|+.+...+....|.|.+ +...|+|.|+|.|.|.+|....++.|.  ..|.+|..... .....+.+.|.|..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~v~l~w~~p  222 (305)
T 2nzi_A          144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKV-SDVSRDSVNLTWTEP  222 (305)
T ss_dssp             BCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEE-ESCCSSCEEEEEECC
T ss_pred             ECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCcee-eeccCCEEEEEEcCC
Confidence            45567888888777788999999 999999999999999999998876655  56777654432 223578899999963


Q ss_pred             ---CCCCCcceEEEeEEcCCCCCCceeeee
Q psy17207         79 ---SYTPLEEFKIKYRKIPGNEPSPMSNQL  105 (123)
Q Consensus        79 ---s~~pi~~y~v~yr~~~~~~~~w~~~~~  105 (123)
                         +..++..|.++|+...  ...|.....
T Consensus       223 ~~~g~~~i~~y~v~~~~~~--~~~w~~~~~  250 (305)
T 2nzi_A          223 ASDGGSKITNYIVEKCATT--AERWLRVGQ  250 (305)
T ss_dssp             SCCSBSCEEEEEEEEEETT--SCCEEEEEE
T ss_pred             ccCCCCceeEEEEEEecCC--CCccEECcc
Confidence               5678999999999864  367876653

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.27  E-value=1.2e-10  Score=87.33  Aligned_cols=95  Identities=16%  Similarity=0.236  Sum_probs=72.7

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeC---CCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVS---SYT   81 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~   81 (123)
                      .|+.+...+..+.|.|.++...|+|.|+|.|.|..|.....+.|.  ..|.+|..... .......+.|.|.++   ++.
T Consensus       147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~-~~~~~~~~~l~w~~p~~~~g~  225 (389)
T 2jll_A          147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKI-IELSQTTAKVSFNKPDSHGGV  225 (389)
T ss_dssp             TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEE-EEECSSCEEEEEECCSCCTTS
T ss_pred             ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEE-eeccCCEEEEEEeCCCCCCCc
Confidence            478887777788999999999999999999999999998876665  46666632221 122467899999953   456


Q ss_pred             CCcceEEEeEEcCCCCCCceeee
Q psy17207         82 PLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        82 pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      |+..|.|+|+....  ..|....
T Consensus       226 pi~~y~v~~~~~~~--~~~~~~~  246 (389)
T 2jll_A          226 PIHHYQVDVKEVAS--EIWKIVR  246 (389)
T ss_dssp             CEEEEEEEEEETTC--SCCEEEE
T ss_pred             ceEEEEEEEEECCC--cccEEee
Confidence            89999999998643  6677554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.23  E-value=1.6e-11  Score=78.73  Aligned_cols=51  Identities=27%  Similarity=0.487  Sum_probs=46.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|+|+|.+|.+..++.|..
T Consensus        53 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  103 (107)
T 3knb_B           53 QLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTV  103 (107)
T ss_dssp             ECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            567889999988888899999999999999999999999999998877764

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.15  E-value=1.7e-10  Score=73.58  Aligned_cols=58  Identities=22%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCcee
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIF   59 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~   59 (123)
                      +|..++|+.+......+.|.|.+++.+|+|.|+|.|.|.+|.....+.|.  +.|.+|..
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P~~  106 (114)
T 2cqv_A           47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG  106 (114)
T ss_dssp             BCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCCC
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCCCC
Confidence            45667899988777788999999999999999999999999988765554  56666543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.13  E-value=1.5e-10  Score=73.11  Aligned_cols=46  Identities=26%  Similarity=0.280  Sum_probs=41.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+...+..++|.|.+++.+|+|.|+|.|+|.+|.+..++.|..
T Consensus        52 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           52 GRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI   97 (100)
T ss_dssp             GTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            5888888888899999999999999999999999999998877764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=2.2e-10  Score=72.33  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=45.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~   55 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|+|.|......+.+.|..+|.
T Consensus        45 ~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           45 PVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS   98 (100)
T ss_dssp             ECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSSCCCEEEEEEEECCSC
T ss_pred             ECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCCCeeEEEEEEEeCCCC
Confidence            467789999988888899999999999999999999999556666677766553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.06  E-value=1.6e-09  Score=76.34  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeec---CCCCCCCCeEEEEEEeCCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS---HPQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~---~~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      .|+.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|...+. |.+..   ......+..+.|.|.+.+.|+.
T Consensus        58 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p-~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P  136 (203)
T 4fa8_A           58 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-LTLSVHSERSQFPDFSVLTVTCTVNAFPHP  136 (203)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE-EEEEEEEEECCSSCSCCEEEEEEEEEESCC
T ss_pred             ceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCC-ceeeecceeEEEcCCCEEEEEEEcCCCCCC
Confidence            4666666677889999999999999999999999999998887776432 22221   1222357789999999876554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.04  E-value=2e-09  Score=74.06  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=63.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc--------------------CCCceeec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--------------------PNPAIFRS   61 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~--------------------P~p~~~~~   61 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|..|....++.|.+.                    +.|+.+..
T Consensus        43 ~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  122 (212)
T 2r15_A           43 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG  122 (212)
T ss_dssp             ECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEB
T ss_pred             EccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCccccc
Confidence            4566789988877778889999999999999999999999999988888532                    12333322


Q ss_pred             CCC---CCCCCeEEEEEEeCCCCCCcceE
Q psy17207         62 HPQ---GRLPNSYNITWMVSSYTPLEEFK   87 (123)
Q Consensus        62 ~~~---~~~~~~~~L~w~~~s~~pi~~y~   87 (123)
                      .+.   ...+..+.|.|.+.+.++.. +.
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~-v~  150 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPE-VS  150 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCE-EE
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCce-EE
Confidence            111   12467899999998766553 44

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.99  E-value=1.3e-09  Score=67.95  Aligned_cols=51  Identities=24%  Similarity=0.265  Sum_probs=44.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...+....|.|.+++.+|+|.|+|.|.|.+|.....+.|..
T Consensus        48 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   98 (103)
T 3qp3_A           48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV   98 (103)
T ss_dssp             ECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            456678998887777889999999999999999999999999998776654

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.6e-09  Score=67.73  Aligned_cols=54  Identities=24%  Similarity=0.404  Sum_probs=44.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCc
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~   57 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|  ......+.|...|.++
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           47 AIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA--SKSTASLHVEEKASGP  100 (103)
T ss_dssp             BCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS--CEEEEEEEECCCSSSS
T ss_pred             EccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc--CCcEEEEEEeCCCCCC
Confidence            46677899998888888999999999999999999999  4555566666666554

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.98  E-value=1.3e-09  Score=68.25  Aligned_cols=53  Identities=26%  Similarity=0.416  Sum_probs=43.1

Q ss_pred             cccCC--CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCc
Q psy17207          3 LETTE--RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (123)
Q Consensus         3 l~~d~--R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~   57 (123)
                      |..+.  ||.+...+....|.|.+++.+|+|.|+|.|.|  +...+.+.|.+.|.|+
T Consensus        47 l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           47 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG--GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             CCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--EEEEEEEEEECCCSCC
T ss_pred             CCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--CcEEEEEEEeCCCCCC
Confidence            45556  88988878889999999999999999999999  5666677777766553

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.98  E-value=1.8e-09  Score=66.51  Aligned_cols=51  Identities=22%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ++..++|+.+...+....|.|.+++.+|+|.|+|.|.|.+|.....+.|..
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V   96 (99)
T 3puc_A           46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI   96 (99)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEE
Confidence            356678999887777889999999999999999999999999988877654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.98  E-value=2e-09  Score=66.55  Aligned_cols=51  Identities=25%  Similarity=0.455  Sum_probs=44.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus        42 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            356678998876666789999999999999999999999999998877764

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.97  E-value=1.2e-09  Score=69.32  Aligned_cols=51  Identities=37%  Similarity=0.402  Sum_probs=44.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...+..+.|.|.+++..|+|.|+|.|.|..|....++.|..
T Consensus        54 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           54 VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             CCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred             ECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence            456678999887777889999999999999999999999999988887764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.97  E-value=3.4e-09  Score=84.17  Aligned_cols=81  Identities=17%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVS   78 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~   78 (123)
                      +|..++||.+...+..+.|.|.++..+|+|.|+|.|.|.+|.+...+.|... .||.+...+.   ...+..+.|.|.+.
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~-~~P~~~~~~~~~~~~~g~~~~l~c~~~  502 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-APPRFVKKLSDISTVVGEEVQLQATIE  502 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC-CCCEEEECCCCBCCBTTCCEEEEEEEE
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec-cCCcccccCCCceecCCCeEEEEEEEe
Confidence            4567789988877778899999999999999999999999999987766643 3444443222   22578899999998


Q ss_pred             CCCCC
Q psy17207         79 SYTPL   83 (123)
Q Consensus        79 s~~pi   83 (123)
                      +.+++
T Consensus       503 g~p~~  507 (570)
T 3b43_A          503 GAEPI  507 (570)
T ss_dssp             SCSSC
T ss_pred             cCCCC
Confidence            77654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.97  E-value=1.5e-09  Score=72.15  Aligned_cols=51  Identities=24%  Similarity=0.208  Sum_probs=41.1

Q ss_pred             ccccCCCEEEEEc-------CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-------GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-------~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...       ...+.|.|.++...|+|.|+|+|+|.+|.+..++.|..
T Consensus        40 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v   97 (126)
T 1he7_A           40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (126)
T ss_dssp             ECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             ECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEE
Confidence            5667777654321       13578999999999999999999999999999888765

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.95  E-value=7e-10  Score=69.21  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus        44 ~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T 1waa_A           44 PLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKS   84 (93)
T ss_dssp             ECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEEE
T ss_pred             ECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCcE
Confidence            56778899998888889999999999999999999999643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.94  E-value=1.9e-09  Score=68.07  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.++..+|+|.|+|+|+|.+|.+..++.|..
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   96 (103)
T 1wwb_X           61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF   96 (103)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEE
Confidence            456999999999999999999999999999988875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.94  E-value=8.3e-09  Score=72.05  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcc
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEE   85 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~   85 (123)
                      .+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..|..+.+........+..+.|.|.+.+.+|...
T Consensus        50 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~  123 (202)
T 1vca_A           50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR  123 (202)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGG
T ss_pred             cCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCC
Confidence            34567899999999999999999999999887766555  4555444433222236788999999987666543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=1.9e-09  Score=67.44  Aligned_cols=54  Identities=17%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCc
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~   57 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|..|  ...+.|..+|.|+
T Consensus        49 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~--~~~l~V~~~P~pp  102 (104)
T 2e6p_A           49 KVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA--FFGVTVQDPSGPS  102 (104)
T ss_dssp             ECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC--CEEEEEECCCCSS
T ss_pred             ECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE--EEEEEEcCCCCCc
Confidence            35567889888778888999999999999999999999865  4455566666554

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.92  E-value=9e-10  Score=68.70  Aligned_cols=43  Identities=21%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             CccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         1 ~~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      ++|..++||.+...+..+.|.|.+++.+|+|.|+|+|.|..+.
T Consensus        44 ~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   86 (91)
T 2lvc_A           44 QEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDECAY   86 (91)
T ss_dssp             SCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSCEEE
T ss_pred             EEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcceEEE
Confidence            3678889999998888999999999999999999999886443

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=3.7e-09  Score=67.73  Aligned_cols=47  Identities=21%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ++|+.+...+..+.|.|.+++.+|+|.|+|.|.|.+|.....+.|..
T Consensus        67 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V  113 (118)
T 2e7c_A           67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV  113 (118)
T ss_dssp             CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEE
T ss_pred             CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEE
Confidence            46777776677788999999999999999999999999888777664

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.90  E-value=2.1e-09  Score=66.06  Aligned_cols=42  Identities=29%  Similarity=0.499  Sum_probs=37.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus        35 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   76 (84)
T 2lu7_A           35 RLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDSRI   76 (84)
T ss_dssp             ECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTCEE
T ss_pred             EccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCEEEE
Confidence            578889999998888899999999999999999999886443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.90  E-value=8.9e-09  Score=70.46  Aligned_cols=85  Identities=14%  Similarity=0.226  Sum_probs=57.2

Q ss_pred             CCCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeCCC
Q psy17207          6 TERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (123)
Q Consensus         6 d~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~s~   80 (123)
                      .+|+.+..   .....+|.|.+++.+|+|.|+|.|.|..|.....+.|.  ..|..+..........+..+.|.|.+...
T Consensus        69 ~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g  148 (214)
T 3jz7_A           69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG  148 (214)
T ss_dssp             TTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBC
T ss_pred             ccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCC
Confidence            45666642   22456899999999999999999999999888776655  44544443322223357889999999433


Q ss_pred             CCCcceEEEeE
Q psy17207         81 TPLEEFKIKYR   91 (123)
Q Consensus        81 ~pi~~y~v~yr   91 (123)
                      .|...|. ||+
T Consensus       149 ~p~~~v~-W~~  158 (214)
T 3jz7_A          149 SLPLQFE-WQK  158 (214)
T ss_dssp             CSSCEEE-EEE
T ss_pred             CCCCEEE-EEE
Confidence            3333454 344

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.89  E-value=2.2e-08  Score=79.54  Aligned_cols=82  Identities=24%  Similarity=0.359  Sum_probs=61.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCC---CCCCeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQG---RLPNSYNITWM   76 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~---~~~~~~~L~w~   76 (123)
                      +|..+.|+.+...+..+.|.|.+++.+|+|.|+|.|.|..|.......|..  .+.||.+......   ..+..+.|.|.
T Consensus        45 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~  124 (570)
T 3b43_A           45 KLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECR  124 (570)
T ss_dssp             BCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEE
T ss_pred             EccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEE
Confidence            466778888876677889999999999999999999999999887655543  3445555433221   14678999999


Q ss_pred             eCCCCCC
Q psy17207         77 VSSYTPL   83 (123)
Q Consensus        77 ~~s~~pi   83 (123)
                      +.+.+|.
T Consensus       125 ~~g~p~~  131 (570)
T 3b43_A          125 INGSEPL  131 (570)
T ss_dssp             EESSSSC
T ss_pred             EccCCCC
Confidence            9876654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.89  E-value=2.7e-08  Score=71.32  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=58.7

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC----CCCCCeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ----GRLPNSYNITWMV   77 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~----~~~~~~~~L~w~~   77 (123)
                      +|..+.++.+...+....|.|.+++..|+|.|+|.|.|..|.....+.|.....| .+.....    ...+..+.|.|.+
T Consensus        45 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p-~~~~~~~~~~~v~~g~~~~l~C~~  123 (284)
T 2rik_A           45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP-RFIKKLEPSRIVKQDEHTRYECKI  123 (284)
T ss_dssp             ECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-EEEECCCSEEEEETTCCEEEEEEE
T ss_pred             ECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCC-cccccCCCceEecCCceEEEEEEE
Confidence            3556678877766778899999999999999999999999998887766643222 2221111    1246788999998


Q ss_pred             CCCCCC
Q psy17207         78 SSYTPL   83 (123)
Q Consensus        78 ~s~~pi   83 (123)
                      .+.++.
T Consensus       124 ~g~p~~  129 (284)
T 2rik_A          124 GGSPEI  129 (284)
T ss_dssp             ESSSCC
T ss_pred             eeeCCC
Confidence            776443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.89  E-value=9.2e-09  Score=70.35  Aligned_cols=74  Identities=19%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEe--ccCCCceeecCCCCCCCCeEEEEEEeCCC
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELS--GKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~--~~P~p~~~~~~~~~~~~~~~~L~w~~~s~   80 (123)
                      .++|+.+..++   .|.|.+++.+|+|.|+|.|.|..|..  ...+.|.  ..+..|.+..     ....+.|.|.+.+.
T Consensus        51 ~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~-----~~~~v~L~C~~~g~  122 (176)
T 1hng_A           51 KSGAFEILANG---DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW-----ECSNATLTCEVLEG  122 (176)
T ss_dssp             SSTTEEECTTS---CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCEEEE-----ETTTTEEEEECSSC
T ss_pred             CCCeEEECCCC---cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCEEEe-----cCCcEEEEEEecCC
Confidence            46788885433   59999999999999999999999987  5555544  3444344332     12348899998887


Q ss_pred             CCCcceE
Q psy17207         81 TPLEEFK   87 (123)
Q Consensus        81 ~pi~~y~   87 (123)
                      ++ ..|.
T Consensus       123 p~-p~i~  128 (176)
T 1hng_A          123 TD-VELK  128 (176)
T ss_dssp             SS-CEEE
T ss_pred             CC-cEEE
Confidence            66 3444

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.88  E-value=1.4e-08  Score=70.24  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=56.9

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce---eE--EEEEEeccC-CCceeecCCCC---CCCCeEEEEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HR--AYLELSGKP-NPAIFRSHPQG---RLPNSYNITW   75 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~--~~i~l~~~P-~p~~~~~~~~~---~~~~~~~L~w   75 (123)
                      .++|+.+...+....|.|.+++.+|+|.|+|.|.|..|.   ..  ..+.|...| .+|.+...+..   ..+..+.|.|
T Consensus        57 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C  136 (213)
T 3mj8_L           57 IPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVC  136 (213)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEE
T ss_pred             ccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEE
Confidence            457998877777889999999999999999999999982   22  244454333 34444322111   1478899999


Q ss_pred             EeCCC-CCCcceEE
Q psy17207         76 MVSSY-TPLEEFKI   88 (123)
Q Consensus        76 ~~~s~-~pi~~y~v   88 (123)
                      .+.+. +|...+.|
T Consensus       137 ~~~g~~p~~~~v~W  150 (213)
T 3mj8_L          137 MINGFYPADVAVTW  150 (213)
T ss_dssp             EEEEEBSSCCEEEE
T ss_pred             EeeceeCCCeEEEE
Confidence            98764 33234443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.88  E-value=1.1e-08  Score=69.32  Aligned_cols=86  Identities=21%  Similarity=0.212  Sum_probs=59.8

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCcee-e--cCCCCCCCCeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIF-R--SHPQGRLPNSYNITWM   76 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~-~--~~~~~~~~~~~~L~w~   76 (123)
                      ++..+.|+.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|..  .|..... .  .......+..+.|.|.
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~  126 (197)
T 3lcy_A           47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM  126 (197)
T ss_dssp             EECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEE
T ss_pred             ECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEE
Confidence            345678888888788889999999999999999999999999887665543  2211100 0  0000124678999999


Q ss_pred             eCCCCCCcceEE
Q psy17207         77 VSSYTPLEEFKI   88 (123)
Q Consensus        77 ~~s~~pi~~y~v   88 (123)
                      +.+.++.. +.|
T Consensus       127 ~~~~p~p~-v~W  137 (197)
T 3lcy_A          127 YIGRPVPA-MTW  137 (197)
T ss_dssp             EEEESCCE-EEE
T ss_pred             EeeeeCCe-eEE
Confidence            88766553 443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=4.7e-09  Score=66.40  Aligned_cols=52  Identities=17%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~   55 (123)
                      +|..++|+.+...+..+.|.|.+++.+|+|.|+|.|.|.  ...+.+.|..+|.
T Consensus        49 ~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~--~~~a~L~V~~~p~  100 (104)
T 2eny_A           49 TVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL--TSKASLIVRERSG  100 (104)
T ss_dssp             BCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE--EEEECEEEECCCS
T ss_pred             ECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe--eEEEEEEEeCCCc
Confidence            567788999988888899999999999999999999774  3344455555543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.88  E-value=1.7e-08  Score=71.04  Aligned_cols=88  Identities=18%  Similarity=0.173  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee---EEEEEEeccCC---CceeecCC---CCCCCCeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPN---PAIFRSHP---QGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~i~l~~~P~---p~~~~~~~---~~~~~~~~~L~w~   76 (123)
                      ++|+.+...+...+|.|.+++.+|+|.|+|.|.|..|..   ...+.|...+.   ++.+...+   ....+..+.|.|.
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  142 (240)
T 1moe_A           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCT  142 (240)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEE
T ss_pred             CccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEE
Confidence            579988776778899999999999999999999986642   23444544331   22221111   1125788999999


Q ss_pred             eCCCCCCcceEEEeEEc
Q psy17207         77 VSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        77 ~~s~~pi~~y~v~yr~~   93 (123)
                      +.+.++......||+..
T Consensus       143 ~~g~p~~~~~v~W~k~~  159 (240)
T 1moe_A          143 ASGFNIKDTYMHWVKQR  159 (240)
T ss_dssp             EESSCGGGSCEEEEEEC
T ss_pred             EcCccCCCCEEEEEEEC
Confidence            98765432335567764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.88  E-value=1.7e-08  Score=68.47  Aligned_cols=80  Identities=24%  Similarity=0.224  Sum_probs=57.1

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCC---CCCCCeEEEEEEeCCCCC
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQ---GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~p   82 (123)
                      |+.+...+....|.|.+++..|+|.|+|.|.|..|.....+.|..  .+.||.+...+.   ...+..+.|.|.+.+.++
T Consensus        53 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~  132 (194)
T 2a38_A           53 GVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT  132 (194)
T ss_dssp             TCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESC
T ss_pred             ceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecC
Confidence            666655566789999999999999999999999999887655543  334444443221   124678999999977655


Q ss_pred             CcceEE
Q psy17207         83 LEEFKI   88 (123)
Q Consensus        83 i~~y~v   88 (123)
                      .. +.|
T Consensus       133 ~~-v~W  137 (194)
T 2a38_A          133 PV-VKF  137 (194)
T ss_dssp             CE-EEE
T ss_pred             Ce-EEE
Confidence            53 443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.88  E-value=9.7e-09  Score=76.78  Aligned_cols=76  Identities=29%  Similarity=0.364  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~p   82 (123)
                      +.|+.+......+.|.|.+++.+|+|.|+|.|.|..|.....+.|...- +|.+.....   ...+..+.|.|.+.+.++
T Consensus        51 ~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~-~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~  129 (389)
T 2jll_A           51 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY-APKFISNQTIYYSWEGNPINISCDVKSNPP  129 (389)
T ss_dssp             SSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-EEEECCSCCEEEECTTCCEEEEECEEEESC
T ss_pred             CCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEe-CCEEecCcceEEeccCCEEEEEEEEEecCC
Confidence            6789887766788999999999999999999999999998876665421 122222111   124678899998877654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=9.6e-09  Score=64.78  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=40.6

Q ss_pred             CCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCc
Q psy17207          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (123)
Q Consensus         6 d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~   57 (123)
                      ++|+.+... .....|.|.+++.+|+|.|+|.|.|.+|.....+.|.  ..|.+|
T Consensus        53 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           53 SDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             CSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSCCS
T ss_pred             CCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCCCC
Confidence            578887654 3345899999999999999999999999998765444  445443

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.87  E-value=4.4e-09  Score=67.37  Aligned_cols=51  Identities=24%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             cccCCCEEEEEcC----CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          3 LETTERRIMETRG----SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         3 l~~d~R~~i~~~~----~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      |..+.|+.+....    ..+.|.|.+++..|+|.|+|+|.|.+|.+.+++.|...
T Consensus        46 l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  100 (118)
T 1wwc_A           46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL  100 (118)
T ss_dssp             CCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCS
T ss_pred             CCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEc
Confidence            4455556553211    35689999999999999999999999999999888653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.87  E-value=8.6e-09  Score=63.54  Aligned_cols=50  Identities=22%  Similarity=0.200  Sum_probs=41.0

Q ss_pred             cccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      |..++|+.+. ..+....|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           46 IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   96 (99)
T ss_dssp             CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEE
Confidence            4556677654 3456779999999999999999999999999998877654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.86  E-value=2.5e-08  Score=71.55  Aligned_cols=84  Identities=21%  Similarity=0.361  Sum_probs=60.0

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCC
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSS   79 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s   79 (123)
                      +..+.++.+...+....|.|.+++..|.|.|+|.|.|..|.....+.|.... +|.+...+   ....+..+.|.|.+.+
T Consensus       140 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g  218 (284)
T 2rik_A          140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHLECELQG  218 (284)
T ss_dssp             CCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC-CCBCCSCCCCEEECTTCCEEEEEECBS
T ss_pred             CcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec-CCcceeCCCcceecCCCeEEEEEEEEe
Confidence            4456677776666788999999999999999999999999998877666432 22222111   1124678999999988


Q ss_pred             CCCCcceEE
Q psy17207         80 YTPLEEFKI   88 (123)
Q Consensus        80 ~~pi~~y~v   88 (123)
                      .++. .+.|
T Consensus       219 ~p~~-~v~W  226 (284)
T 2rik_A          219 TPPF-QVSW  226 (284)
T ss_dssp             SSCC-EEEE
T ss_pred             cCCC-EEEE
Confidence            7654 3443

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.85  E-value=6.2e-09  Score=85.01  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCce-eEE--EEEEeccCCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGK-HRA--YLELSGKPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKY   90 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~--~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~y   90 (123)
                      .+.|.|.++...|+|.|+|+|.|.+|. ...  .+.+..+|.++..... .......+.|.|.++   +..||..|.|+|
T Consensus       222 ~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~-~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~  300 (731)
T 2v5y_A          222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL-ASVGATYLWIQLNANSINGDGPIVAREVEY  300 (731)
T ss_dssp             EEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEE-EEECSSCEEEECCCSSBSSCSCCCEEEEEE
T ss_pred             eEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcce-eccCCceEEEEeCCcccCCCCccEEEEEEE
Confidence            578999999999999999999999998 443  4555555554322111 112467899999964   448999999999


Q ss_pred             EEcCCCCCCceeee
Q psy17207         91 RKIPGNEPSPMSNQ  104 (123)
Q Consensus        91 r~~~~~~~~w~~~~  104 (123)
                      +...   ..|....
T Consensus       301 ~~~~---~~~~~~~  311 (731)
T 2v5y_A          301 CTAS---GSWNDRQ  311 (731)
T ss_dssp             EESS---SSCEEEE
T ss_pred             EECC---CCceEEe
Confidence            9863   5686544

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.84  E-value=7.2e-09  Score=63.88  Aligned_cols=46  Identities=28%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+...+....|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus        51 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           51 RRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV   96 (99)
T ss_dssp             TEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEE
Confidence            4556665666778999999999999999999999999998877654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.84  E-value=5.6e-09  Score=73.20  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=51.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFK   87 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~   87 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|.....+.+...+.+...........+..+.|.|.+.+..|...+.
T Consensus        81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~  152 (226)
T 4f80_A           81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQ  152 (226)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEE
T ss_pred             CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEE
Confidence            467899999999999999999999999999988877644332222111122467888999987653433444

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.84  E-value=5.5e-08  Score=70.52  Aligned_cols=83  Identities=22%  Similarity=0.273  Sum_probs=61.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc--------------------CCCceeec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--------------------PNPAIFRS   61 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~--------------------P~p~~~~~   61 (123)
                      +|..++|+.+...+....|.|.+++.+|.|.|+|.|.|..|....++.|.+.                    +.|.....
T Consensus       148 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  227 (317)
T 2y25_A          148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG  227 (317)
T ss_dssp             BCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEB
T ss_pred             ECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCccccc
Confidence            4567789988887888899999999999999999999999999998887531                    11222211


Q ss_pred             CCC---CCCCCeEEEEEEeCCCCCCc
Q psy17207         62 HPQ---GRLPNSYNITWMVSSYTPLE   84 (123)
Q Consensus        62 ~~~---~~~~~~~~L~w~~~s~~pi~   84 (123)
                      .+.   ...+..+.|.|.+.+.++..
T Consensus       228 ~~~~~~v~~g~~~~l~C~~~g~p~p~  253 (317)
T 2y25_A          228 LPDVVTIQEGKALNLTCNVWGDPPPE  253 (317)
T ss_dssp             CCSEEEEETTSBBCEEEEEECSSCCE
T ss_pred             CCccEEEEcCCEEEEEEEEecCCCCE
Confidence            111   12467889999998776553

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.83  E-value=1.3e-08  Score=69.87  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             ccCCCEEEEEcC---CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeC
Q psy17207          4 ETTERRIMETRG---SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVS   78 (123)
Q Consensus         4 ~~d~R~~i~~~~---~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~   78 (123)
                      ..++|+.+....   ....|.|.+++.+|+|.|+|.|.|..|.....+.|..  .|..|.+... ....+..+.|.|.+.
T Consensus        50 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~-~~~~g~~v~l~C~~~  128 (202)
T 3bp6_B           50 LQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRIL-EVPGTGEVQLTCQAR  128 (202)
T ss_dssp             CBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEE-ECTTTCCEEEEEEEE
T ss_pred             ccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEE-ecCCCCeEEEEEEcc
Confidence            344677665321   4578999999999999999999999998877766654  3444433321 112478899999997


Q ss_pred             CCCC
Q psy17207         79 SYTP   82 (123)
Q Consensus        79 s~~p   82 (123)
                      +++.
T Consensus       129 g~P~  132 (202)
T 3bp6_B          129 GYPL  132 (202)
T ss_dssp             EBSC
T ss_pred             ccCC
Confidence            7544

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.83  E-value=1.7e-08  Score=73.09  Aligned_cols=86  Identities=14%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--------------cCCCceeec-CCCCC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--------------KPNPAIFRS-HPQGR   66 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--------------~P~p~~~~~-~~~~~   66 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|..|... ++.|..              .|..+.... .....
T Consensus        42 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~  120 (312)
T 2y23_A           42 STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL  120 (312)
T ss_dssp             ECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEe
Confidence            45667899998888889999999999999999999999999766 444442              232222111 11122


Q ss_pred             CCCeEEEEEEeCCCCCCcceEE
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+..+.|.|.+....|...+.|
T Consensus       121 ~G~~v~l~C~~~~~~p~~~v~W  142 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSGNAKVNY  142 (312)
T ss_dssp             SSSCEEEEEEESCCCSSCEEEE
T ss_pred             eCCCEEEEEEEEeCCCCCEEEE
Confidence            5678999999984444444553

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.83  E-value=7.7e-09  Score=63.44  Aligned_cols=42  Identities=21%  Similarity=0.426  Sum_probs=35.8

Q ss_pred             EEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         11 METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        11 i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +......+.|.|.++..+|+|.|+|.|.|.+|.+..++.|..
T Consensus        51 ~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           51 VDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            333455789999999999999999999999999998887753

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.81  E-value=2e-08  Score=69.34  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceeecCCCC---CCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~~~~~~---~~~~~~~L~w~~~s   79 (123)
                      ++||.+...+....|.|.+++.+|+|.|+|.|.|..|...   ..+.|...+.+|.+...+..   ..+..+.|.|.+.+
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g  138 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNN  138 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEee
Confidence            5789887667788999999999999999999999875333   23444333445544321111   13567999999876


Q ss_pred             CCC-CcceE
Q psy17207         80 YTP-LEEFK   87 (123)
Q Consensus        80 ~~p-i~~y~   87 (123)
                      .+| ...+.
T Consensus       139 ~~p~~~~v~  147 (213)
T 3r06_A          139 FYPKDINVK  147 (213)
T ss_dssp             EBSSCEEEE
T ss_pred             ecCCceEEE
Confidence            544 33444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.81  E-value=5.2e-08  Score=65.94  Aligned_cols=81  Identities=20%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCC
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSS   79 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s   79 (123)
                      .+.|+.+.. .+..+.|.|.+++.+|+|.|+|.|.|.. |.....+.|..... |.+...+   ....+..+.|.|.+.+
T Consensus        48 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~g  126 (191)
T 1epf_A           48 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCDVVS  126 (191)
T ss_dssp             BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECC-SEEEECCSSEECCTTSCEEECCEEEC
T ss_pred             CCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecC-ceEecCCCcEeecCCCeEEEEEEECC
Confidence            456777653 3567899999999999999999999998 55566666654322 2222111   1125778999999987


Q ss_pred             CCCCcceE
Q psy17207         80 YTPLEEFK   87 (123)
Q Consensus        80 ~~pi~~y~   87 (123)
                      .++.. +.
T Consensus       127 ~p~~~-v~  133 (191)
T 1epf_A          127 SLPPT-II  133 (191)
T ss_dssp             SSCCE-EE
T ss_pred             CCCCE-EE
Confidence            76654 44

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.81  E-value=1.9e-08  Score=69.56  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCC-CCCC-eEEEEEEeCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQG-RLPN-SYNITWMVSSYTP   82 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~-~~~~-~~~L~w~~~s~~p   82 (123)
                      +|+.+.   ..++|+|.+++.+|+|.|+|.|.|..|.....+.|..  .|..|.+...... ..+. .+.|.|.+.+.+|
T Consensus        62 ~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p  138 (193)
T 2if7_A           62 KRLNFT---QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADD  138 (193)
T ss_dssp             TTEEEC---TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCT
T ss_pred             ccEEEC---CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCC
Confidence            466665   2468999999999999999999999998766655554  3333443322211 1233 7999999988654


Q ss_pred             CcceEE
Q psy17207         83 LEEFKI   88 (123)
Q Consensus        83 i~~y~v   88 (123)
                      ...|.|
T Consensus       139 ~p~i~W  144 (193)
T 2if7_A          139 NVSFRW  144 (193)
T ss_dssp             TCEEEE
T ss_pred             ceEEEE
Confidence            445553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.81  E-value=2e-08  Score=70.57  Aligned_cols=85  Identities=12%  Similarity=0.088  Sum_probs=55.3

Q ss_pred             ccccCCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--cc------------------CCCcee
Q psy17207          2 RLETTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GK------------------PNPAIF   59 (123)
Q Consensus         2 ~l~~d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~------------------P~p~~~   59 (123)
                      +|..++||.+..++  ....|.|.+++.+|+|.|+|.|.|  |.+...+.+.  ..                  ..+|.|
T Consensus        43 ~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  120 (207)
T 3rbs_A           43 EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF  120 (207)
T ss_dssp             EECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEE
T ss_pred             ECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCce
Confidence            46677888876544  456899999999999999999999  5555443321  10                  024443


Q ss_pred             ecCC--CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         60 RSHP--QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        60 ~~~~--~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ....  ....+..+.|.|.+.+..|...+.|
T Consensus       121 ~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W  151 (207)
T 3rbs_A          121 VEYLSWEVTGECNVLLKCKVANIKKETHIVW  151 (207)
T ss_dssp             EEEEEEEEETTTEEEEEEEEESCCTTCEEEE
T ss_pred             EecCCcEEcCCCcEEEEEEEeCCCCCCEEEE
Confidence            3211  1124778999999887744444553

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.81  E-value=4.2e-08  Score=67.09  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc--eeEEE--EEEeccCCCceeecCCCCCCCCeEEEEEE-eCC
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG--KHRAY--LELSGKPNPAIFRSHPQGRLPNSYNITWM-VSS   79 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~-~~s   79 (123)
                      .+.|+.+..    +.|.|.+++..|+|.|+|.|.|..|  .....  +.|..+|..+..........+..+.|.|. +.+
T Consensus        56 ~~~r~~~~~----~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  131 (212)
T 1f97_A           56 YADRVTFSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDG  131 (212)
T ss_dssp             GTTTEEEET----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCC
T ss_pred             ccCcEEeec----eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccC
Confidence            356777653    6899999999999999999999977  33444  44445565554443222235788999999 566


Q ss_pred             CCCCcceEE
Q psy17207         80 YTPLEEFKI   88 (123)
Q Consensus        80 ~~pi~~y~v   88 (123)
                      .++. .+.|
T Consensus       132 ~p~~-~i~W  139 (212)
T 1f97_A          132 SPPS-EYSW  139 (212)
T ss_dssp             BSCC-EEEE
T ss_pred             cCCC-EEEE
Confidence            5554 4443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.80  E-value=1.5e-08  Score=70.17  Aligned_cols=81  Identities=16%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce---eE----EEEEEeccC-CCceeecCCCC---CCCCeEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HR----AYLELSGKP-NPAIFRSHPQG---RLPNSYNITW   75 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~----~~i~l~~~P-~p~~~~~~~~~---~~~~~~~L~w   75 (123)
                      +|+.+...+....|.|.+++.+|+|.|+|.|.|..|.   ..    ..+.|...| .+|.+......   .....+.|.|
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C  143 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVC  143 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEE
T ss_pred             cceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEE
Confidence            5888876677889999999999999999999998872   11    234444433 34443321111   1347899999


Q ss_pred             EeCCCCC-CcceE
Q psy17207         76 MVSSYTP-LEEFK   87 (123)
Q Consensus        76 ~~~s~~p-i~~y~   87 (123)
                      .+.+..| ...+.
T Consensus       144 ~~~g~~p~~~~v~  156 (218)
T 3s96_B          144 LISNFSPSGVTVA  156 (218)
T ss_dssp             EEEEEBSSCCEEE
T ss_pred             EECcccCCCeEEE
Confidence            9876433 22444

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.8e-08  Score=63.75  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P   54 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|  ......+.|...|
T Consensus        52 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n--~~~~~~l~V~~~p  102 (113)
T 2cpc_A           52 EVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD--ESASFTVTVTEPP  102 (113)
T ss_dssp             ECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS--CEEEEEEEEECCC
T ss_pred             ECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec--CcEEEEEEEecCC
Confidence            35567888888777778999999999999999999999  4445555666555

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.6e-08  Score=62.89  Aligned_cols=49  Identities=20%  Similarity=0.476  Sum_probs=40.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P   54 (123)
                      +|..+.|+.+.    ...|.|.+++..|+|.|+|+|.|..|.....+.|....
T Consensus        42 ~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~   90 (99)
T 2cr3_A           42 QLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD   90 (99)
T ss_dssp             BCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCS
T ss_pred             ECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEec
Confidence            34556677764    35899999999999999999999999999888887643

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.3e-08  Score=63.91  Aligned_cols=55  Identities=31%  Similarity=0.442  Sum_probs=40.3

Q ss_pred             cccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCc
Q psy17207          3 LETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (123)
Q Consensus         3 l~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~   57 (123)
                      |..+.++.+. .......|.|.+++.+|+|.|+|.|.|..|....++.|.  ..|.+|
T Consensus        50 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           50 VRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             CCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCSS
T ss_pred             CCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCCC
Confidence            4445555443 333456899999999999999999999999988865555  445443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.79  E-value=3.1e-08  Score=68.77  Aligned_cols=82  Identities=15%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc-ee---EEEEEEeccCCCceeecCCCC---CCCCeEEEEEEeC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KH---RAYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVS   78 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~---~~~i~l~~~P~p~~~~~~~~~---~~~~~~~L~w~~~   78 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..| ..   ...+.|...+.+|.+......   ..+..+.|.|.+.
T Consensus        60 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  139 (216)
T 2xzc_L           60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN  139 (216)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             CCceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEE
Confidence            4688887667788999999999999999999999987 11   123445444445544321111   1356899999987


Q ss_pred             CCCCC-cceE
Q psy17207         79 SYTPL-EEFK   87 (123)
Q Consensus        79 s~~pi-~~y~   87 (123)
                      +..|. ..+.
T Consensus       140 g~~P~~~~v~  149 (216)
T 2xzc_L          140 NFYPREAKVQ  149 (216)
T ss_dssp             EEBSSCCEEE
T ss_pred             eEcCCceEEE
Confidence            64333 3444

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.79  E-value=8.5e-09  Score=63.65  Aligned_cols=47  Identities=21%  Similarity=0.507  Sum_probs=39.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+.    .+.|.|.+++.+|+|.|+|+|.|.+|.....+.|..
T Consensus        48 ~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           48 QLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             CCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            35566787764    358999999999999999999999999988877653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.78  E-value=2.2e-08  Score=71.96  Aligned_cols=86  Identities=23%  Similarity=0.259  Sum_probs=57.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEEec--cCCCceeecCCCCCCCCeEEEEEEeC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVS   78 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~   78 (123)
                      .+..+.|+.+...+....|.|.+++..|+|.|+|.|.|..|... ..+.|..  .|.............+..+.|.|.+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~  123 (291)
T 2wim_A           44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS  123 (291)
T ss_dssp             BCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCB
T ss_pred             CccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEc
Confidence            34566889888778888999999999999999999999999874 3444443  22211111111112467888999887


Q ss_pred             CCCCCcceEE
Q psy17207         79 SYTPLEEFKI   88 (123)
Q Consensus        79 s~~pi~~y~v   88 (123)
                      +.++. .+.|
T Consensus       124 ~~p~~-~v~W  132 (291)
T 2wim_A          124 SSPAP-AVSW  132 (291)
T ss_dssp             CSSCC-EEEE
T ss_pred             cCCCC-EEEE
Confidence            65543 3443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.78  E-value=3.7e-08  Score=68.08  Aligned_cols=77  Identities=19%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeec-CCC--CCCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s   79 (123)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..|....   .+.|...+.+|.+.. .+.  ...+..+.|.|.+.+
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g  137 (210)
T 1lk3_L           58 PARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNN  137 (210)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEE
T ss_pred             cccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEe
Confidence            37888876677789999999999999999999999875432   344544333444332 111  114678999999876


Q ss_pred             CCC
Q psy17207         80 YTP   82 (123)
Q Consensus        80 ~~p   82 (123)
                      ..|
T Consensus       138 ~~p  140 (210)
T 1lk3_L          138 FYP  140 (210)
T ss_dssp             EBS
T ss_pred             EeC
Confidence            433

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=4.2e-09  Score=65.70  Aligned_cols=45  Identities=31%  Similarity=0.461  Sum_probs=36.7

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccC
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P   54 (123)
                      ||.+...+....|.|.+++.+|+|.|+|.|.|  +...+.+.|.++|
T Consensus        57 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~~~~~~l~V~~~P  101 (101)
T 2edk_A           57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG--GQCEAELIVEEKQ  101 (101)
T ss_dssp             CCEEEECSSEEEEECSSCCGGGCSBEEEECSS--CEECCBEEEECCC
T ss_pred             eEEEEECCCEEEEEECCCChhhCEEEEEEEcC--CcEEEEEEEeCCC
Confidence            88888888888999999999999999999998  4444555555543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.77  E-value=3.4e-08  Score=68.22  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeec-CCC--CCCCCeEEEEEEeCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSSY   80 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s~   80 (123)
                      +|+.+...+....|.|.+++.+|+|.|+|.|.|..|....   .+.|...+.+|.+.. .+.  ...+..+.|.|.+.+.
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~  139 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee
Confidence            7898877777889999999999999999999999876532   445544433444332 111  1135689999998763

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.77  E-value=1.2e-08  Score=64.07  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|..+...+.+.|..
T Consensus        47 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~l~V~~   97 (106)
T 2dlt_A           47 EVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLE   97 (106)
T ss_dssp             BCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSCCCCCBCEEEEC
T ss_pred             ECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCCceEEEEEEEEE
Confidence            466778999987788889999999999999999999999555555565553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.77  E-value=2.2e-08  Score=69.98  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceeecCCCC---CCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~~~~~~---~~~~~~~L~w~~~s   79 (123)
                      ++||.+...+....|.|.+++.+|+|.|+|.|.|..|...   ..+.|...+.+|.+......   ..+..+.|.|.+.+
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~  161 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  161 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcc
Confidence            5799887667788999999999999999999999876332   24555554555554421111   13567999999877


Q ss_pred             CCC-CcceE
Q psy17207         80 YTP-LEEFK   87 (123)
Q Consensus        80 ~~p-i~~y~   87 (123)
                      ..| ...+.
T Consensus       162 ~~p~~~~v~  170 (237)
T 3sob_L          162 FYPREAKVQ  170 (237)
T ss_dssp             EBSSCCEEE
T ss_pred             cCCCceEEE
Confidence            544 33444

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.77  E-value=2.1e-08  Score=64.37  Aligned_cols=47  Identities=30%  Similarity=0.364  Sum_probs=39.6

Q ss_pred             CCCEEEEEcCC-EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETRGS-RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~~-~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ++|+.+...+. ..+|.|.+++.+|+|.|+|.|.|..|....++.|..
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  107 (116)
T 2kkq_A           60 TDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV  107 (116)
T ss_dssp             BTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            57888875543 458999999999999999999999999998776654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.76  E-value=3.4e-08  Score=68.50  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE--E--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCC
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--Y--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY   80 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~   80 (123)
                      .++|+.+..+   ++|.|.+++.+|+|.|+|.|.|..|....  .  +.|.....+|.+..     ....+.|.|.+.+.
T Consensus        56 ~~~R~~~~~n---gsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~~  127 (182)
T 1hnf_A           56 EKDTYKLFKN---GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-----TCINTTLTCEVMNG  127 (182)
T ss_dssp             SCTTEEECTT---SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE-----ETTTTEEEEECSSC
T ss_pred             CCCeEEECCC---CCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE-----ccCcEEEEeEccCC
Confidence            5688888743   38999999999999999999999998643  3  34444333444332     12257899998876


Q ss_pred             CCCcceEE
Q psy17207         81 TPLEEFKI   88 (123)
Q Consensus        81 ~pi~~y~v   88 (123)
                      +++ .|.|
T Consensus       128 p~~-~~~W  134 (182)
T 1hnf_A          128 TDP-ELNL  134 (182)
T ss_dssp             SSC-EEEE
T ss_pred             CCC-EEEE
Confidence            544 3553

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.76  E-value=6.2e-08  Score=68.65  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccC-----------------CCceeecCC--
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP-----------------NPAIFRSHP--   63 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P-----------------~p~~~~~~~--   63 (123)
                      ++||.+...+...+|.|.+++.+|+|.|+|.|.|..|....   .+.|...|                 .++.+....  
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
T 3esu_F           62 PSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  141 (250)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCE
T ss_pred             CCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCce
Confidence            57898877777889999999999999999999998665332   33343321                 111111111  


Q ss_pred             CCCCCCeEEEEEEeCCCCCCcceEEEeEEcCC
Q psy17207         64 QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        64 ~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~   95 (123)
                      ....+..+.|.|.+.+.++......|||....
T Consensus       142 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~  173 (250)
T 3esu_F          142 LVKPGASVKISCKDSGYAFSSSWMNWVKQRPG  173 (250)
T ss_dssp             EECTTCCEEEEEECCSTTGGGSEEEEEEECTT
T ss_pred             EEcCCceEEEEEEecCCcccCCEEEEEEECCC
Confidence            11257889999998775432344667887533

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.76  E-value=9e-08  Score=67.80  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCC----------Cc-eeecCC--CCCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN----------PA-IFRSHP--QGRLPN   69 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~----------p~-~~~~~~--~~~~~~   69 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..+...   ..+.|...|.          |+ .+...+  ....+.
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  143 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGE  143 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTC
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCC
Confidence            5788887666778999999999999999999999865422   2344444321          22 111111  122578


Q ss_pred             eEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         70 SYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        70 ~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      .+.|.|.+.+.++......|||..
T Consensus       144 ~v~L~C~~~~~~~~~~~v~W~k~~  167 (247)
T 1svz_A          144 TVKISCKATNYAFTDYSMHWVKQA  167 (247)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             cEEEEEEEcCcccCCcEEEEEEeC
Confidence            899999987664322345577764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.75  E-value=5.1e-08  Score=61.73  Aligned_cols=47  Identities=36%  Similarity=0.567  Sum_probs=38.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++||.+...+....|.|.+++.+|+|.|+|.|    |....++.|..
T Consensus        57 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V  103 (113)
T 2edh_A           57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV  103 (113)
T ss_dssp             BCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEE
T ss_pred             ECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEE
Confidence            466778999988888889999999999999999999    55666555554

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.75  E-value=4.5e-08  Score=69.58  Aligned_cols=88  Identities=22%  Similarity=0.289  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCC----------Cc-eeec-C-CCCCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN----------PA-IFRS-H-PQGRLPN   69 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~----------p~-~~~~-~-~~~~~~~   69 (123)
                      ++|+.+...+....|+|.+++.+|+|.|.|.|.|..+...   ..+.|...|.          ++ .+.. . .....+.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  138 (242)
T 2znx_A           59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQ  138 (242)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTS
T ss_pred             CCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCC
Confidence            5799887666778999999999999999999999865322   2344444332          11 1111 1 1123578


Q ss_pred             eEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         70 SYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        70 ~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      .+.|.|.+.+.++...+..|||..
T Consensus       139 ~v~L~C~~~g~~~~~~~v~W~k~~  162 (242)
T 2znx_A          139 TLSLTCSVTGDSITSDYXSXIRKF  162 (242)
T ss_dssp             CEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             eEEEEEEEEccccCCcceeeEeeC
Confidence            999999987654222345577764

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.75  E-value=3.9e-08  Score=60.60  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         13 TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .......|.|.+++..|+|.|+|.|.|.+|....++.|..
T Consensus        57 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           57 SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV   96 (100)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            3444579999999999999999999999999998887765

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.74  E-value=1.1e-07  Score=65.73  Aligned_cols=85  Identities=20%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             cCCCEEEEEc-CCEEEEEEcccCC-CCCeeEEEEEEcCCce-eEEEEEEe--ccC----CCceeecCCCC---CCCCeEE
Q psy17207          5 TTERRIMETR-GSRHTLMIRKVVA-SDFGNYSCEATNPMGK-HRAYLELS--GKP----NPAIFRSHPQG---RLPNSYN   72 (123)
Q Consensus         5 ~d~R~~i~~~-~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~-~~~~i~l~--~~P----~p~~~~~~~~~---~~~~~~~   72 (123)
                      .+.|+.+... +....|.|.+++. .|+|.|+|.|.|..|. ....+.|.  ..+    .+|.+...+..   ..+..+.
T Consensus        50 ~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~  129 (212)
T 2yd1_A           50 TQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVL  129 (212)
T ss_dssp             TSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEE
T ss_pred             CcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEE
Confidence            5678877543 4457999999999 9999999999999998 55555544  322    12444332211   1467899


Q ss_pred             EEEEeCCCCCCcceEEEeE
Q psy17207         73 ITWMVSSYTPLEEFKIKYR   91 (123)
Q Consensus        73 L~w~~~s~~pi~~y~v~yr   91 (123)
                      |.|.+.+.++.. +. ||+
T Consensus       130 l~C~~~g~p~p~-i~-W~~  146 (212)
T 2yd1_A          130 MTCKAIGNPTPN-IY-WIK  146 (212)
T ss_dssp             ECCEEECSSCCE-EE-EEE
T ss_pred             EEEEeccCCCCe-EE-EEE
Confidence            999998776543 44 444

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.74  E-value=4.7e-08  Score=66.59  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEE-EEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+.|.|.+++..|+|.|+|.|.|..|..... +.|... .+|.+...+.   ...+..+.|.|.+.+.++...+.|
T Consensus        67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W  141 (195)
T 2c5d_C           67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE-GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLW  141 (195)
T ss_dssp             EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-CSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEE
T ss_pred             ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEe-cCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEE
Confidence            5789999999999999999999998876543 444331 1223322211   124678999999987765534553

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.74  E-value=7e-08  Score=66.66  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccC-CCceeecCCC---CCCCCeEEEEEEeC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKP-NPAIFRSHPQ---GRLPNSYNITWMVS   78 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P-~p~~~~~~~~---~~~~~~~~L~w~~~   78 (123)
                      .+|+.+...+....|.|.+++.+|+|.|+|.|.|..|...   ..+.|...+ .+|.+.....   ...+..+.|.|.+.
T Consensus        61 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  140 (212)
T 1q0x_L           61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTIT  140 (212)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             cccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEE
Confidence            4788887666778999999999999999999999887432   234443322 3444332111   11356899999987


Q ss_pred             CCCC
Q psy17207         79 SYTP   82 (123)
Q Consensus        79 s~~p   82 (123)
                      +.+|
T Consensus       141 g~~p  144 (212)
T 1q0x_L          141 DFYP  144 (212)
T ss_dssp             EEBS
T ss_pred             EEeC
Confidence            6544

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.73  E-value=5.8e-08  Score=60.92  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=34.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   84 (108)
T 2dm7_A           46 TLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQE   84 (108)
T ss_dssp             BCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETTE
T ss_pred             ECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcCC
Confidence            456778999988888889999999999999999999663

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.73  E-value=3.5e-08  Score=66.41  Aligned_cols=82  Identities=15%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             ccCCCEEEEEcCC--EEEEEEcccCCCCCeeEEEEEEcCCceeE-E--EEEEeccCCCceeecCCC---CCCCCeEEEEE
Q psy17207          4 ETTERRIMETRGS--RHTLMIRKVVASDFGNYSCEATNPMGKHR-A--YLELSGKPNPAIFRSHPQ---GRLPNSYNITW   75 (123)
Q Consensus         4 ~~d~R~~i~~~~~--~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~--~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w   75 (123)
                      ..+.++.+...+.  .+.|.|.+++..|+|.|+|.|.|..|... .  .+.|..+|   .+...+.   ...+..+.|.|
T Consensus        44 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p---~~~~~~~~~~~~~g~~~~l~C  120 (182)
T 1rhf_A           44 QNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVP---FFTVEPKDLAVPPNAPFQLSC  120 (182)
T ss_dssp             CSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSC---EEEECCCCEEECTTCCEEEEE
T ss_pred             CCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCC---eEEecCcceEecCCCEEEEEe
Confidence            3344454433222  46899999999999999999999988644 2  34444433   2222111   12467899999


Q ss_pred             EeCCCCCCcceEE
Q psy17207         76 MVSSYTPLEEFKI   88 (123)
Q Consensus        76 ~~~s~~pi~~y~v   88 (123)
                      .+.+.++...|.|
T Consensus       121 ~~~g~p~p~~v~W  133 (182)
T 1rhf_A          121 EAVGPPEPVTIVW  133 (182)
T ss_dssp             EEECSSSCCEEEE
T ss_pred             EecCCCCCCEEEE
Confidence            9987765445554

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.73  E-value=2.1e-08  Score=61.66  Aligned_cols=47  Identities=19%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      |..+.|+.+.    .+.|.|.+++.+|+|.|+|.|.|..|.....+.|...
T Consensus        40 ~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   86 (95)
T 4hwu_A           40 LGPNNRTVLI----GEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVT   86 (95)
T ss_dssp             ECCCSSEEEE----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCCceEEEe----CCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEe
Confidence            4556777764    2489999999999999999999999999888877753

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.72  E-value=1.4e-07  Score=67.50  Aligned_cols=86  Identities=13%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-------eeE----EEEEEeccCC------------Cceee
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-------KHR----AYLELSGKPN------------PAIFR   60 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~----~~i~l~~~P~------------p~~~~   60 (123)
                      ++|+.+..+  +...+|+|.+++.+|+|.|+|.|.|..|       ...    ..+.|...|.            ++.+.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  143 (257)
T 1f3r_B           64 KSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLT  143 (257)
T ss_dssp             STTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEE
Confidence            578988753  5678999999999999999999999965       111    2344443321            11111


Q ss_pred             cCC---CCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         61 SHP---QGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        61 ~~~---~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ..+   ....+..+.|.|.+.+.++.  ...|||..
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~  177 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINN--YLAWYQQK  177 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBT--CEEEEEEC
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCC--cEEEEEEC
Confidence            111   12257889999998776543  35567754

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.72  E-value=1.4e-07  Score=67.15  Aligned_cols=89  Identities=15%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-----EEEEEeccCC------------------Cceeec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-----AYLELSGKPN------------------PAIFRS   61 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-----~~i~l~~~P~------------------p~~~~~   61 (123)
                      .++|+.+...+....|.|.+++.+|+|.|+|.|.|..|...     ..+.|.+.|.                  ++.+..
T Consensus        61 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (256)
T 3ux9_B           61 VPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE  140 (256)
T ss_dssp             CCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE
T ss_pred             cCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc
Confidence            35799887777788999999999999999999999765322     2344444331                  111111


Q ss_pred             CC--CCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         62 HP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        62 ~~--~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ..  ....+..+.|.|.+.+.++......|||..
T Consensus       141 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~  174 (256)
T 3ux9_B          141 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQA  174 (256)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEEC
Confidence            11  112578899999997655323345567764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.72  E-value=4.7e-08  Score=67.51  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce--eEE--EEEEeccC-CCceeecCCCC---CCCCeEEEEEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRA--YLELSGKP-NPAIFRSHPQG---RLPNSYNITWM   76 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--~~~--~i~l~~~P-~p~~~~~~~~~---~~~~~~~L~w~   76 (123)
                      ..+|+.+...+....|.|.+++.+|+|.|+|.|.|..|.  ...  .+.|...+ .+|.+...+..   ..+..+.|.|.
T Consensus        55 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~  134 (211)
T 3tv3_L           55 VPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCL  134 (211)
T ss_dssp             SCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEE
T ss_pred             CcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEE
Confidence            347898876677889999999999999999999999883  222  34444322 34444322211   13678999999


Q ss_pred             eCCC-CCCcceE
Q psy17207         77 VSSY-TPLEEFK   87 (123)
Q Consensus        77 ~~s~-~pi~~y~   87 (123)
                      +.+. +|...+.
T Consensus       135 ~~g~~p~~~~v~  146 (211)
T 3tv3_L          135 ISDFYPGAVTVA  146 (211)
T ss_dssp             EEEEBSSCCEEE
T ss_pred             eeeecCCCeEEE
Confidence            8764 3344444

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.71  E-value=4.4e-08  Score=66.15  Aligned_cols=47  Identities=26%  Similarity=0.446  Sum_probs=42.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ++|+.+...+....|.|.+++ ..|+|.|+|.|.|.+|.....+.|..
T Consensus       134 ~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  181 (184)
T 3b5h_A          134 ESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  181 (184)
T ss_dssp             GGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEE
Confidence            478988887888899999999 99999999999999999999877764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.71  E-value=5.6e-08  Score=69.06  Aligned_cols=77  Identities=21%  Similarity=0.300  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeec-CCC--CCCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s   79 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..+....   .+.|...+.+|.+.. .+.  ...+..+.|.|.+.+
T Consensus       101 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g  180 (254)
T 2c1o_A          101 PDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  180 (254)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             cceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEec
Confidence            37898877777889999999999999999999998664332   344544333444332 111  113458999999876


Q ss_pred             CCC
Q psy17207         80 YTP   82 (123)
Q Consensus        80 ~~p   82 (123)
                      .+|
T Consensus       181 ~~p  183 (254)
T 2c1o_A          181 FYP  183 (254)
T ss_dssp             EBS
T ss_pred             ccC
Confidence            433

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.71  E-value=3.9e-08  Score=67.48  Aligned_cols=66  Identities=17%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCce----eEEEEEEeccCCCceeecCCC--CCCCCeEEEEEEeCCC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGK----HRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSY   80 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~----~~~~i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~   80 (123)
                      .....|.|.+++.+|+|.|+|.|.|..|.    ....+.|.+.+.+|.+...+.  ...+..+.|.|.+.+.
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~  126 (196)
T 3p2t_A           55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP  126 (196)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE
T ss_pred             CceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC
Confidence            45689999999999999999999999983    223455555554555442221  2357889999998663

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.71  E-value=4.5e-08  Score=65.57  Aligned_cols=51  Identities=22%  Similarity=0.358  Sum_probs=41.8

Q ss_pred             ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+... ...+.|.|.+++..|+|.|+|.|.|.+|.....+.|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  132 (154)
T 1fhg_A           81 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV  132 (154)
T ss_dssp             ECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEE
Confidence            3556678877643 33579999999999999999999999999998777664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.70  E-value=8.8e-08  Score=68.88  Aligned_cols=88  Identities=10%  Similarity=0.098  Sum_probs=56.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce---eE--EEEEEeccCCCceeecC--CCCCCCCeEEEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK---HR--AYLELSGKPNPAIFRSH--PQGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~--~~i~l~~~P~p~~~~~~--~~~~~~~~~~L~w~   76 (123)
                      ++|+.+...  +....|+|.+++.+|+|.|+|.|.|..|.   ..  ..+.|...+.+......  .....+..+.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~  144 (256)
T 1nqb_A           65 KSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCR  144 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeE
Confidence            478988753  45789999999999999999999999773   11  12344433322211111  01135788999999


Q ss_pred             eCCCCCCc---ceEEEeEEc
Q psy17207         77 VSSYTPLE---EFKIKYRKI   93 (123)
Q Consensus        77 ~~s~~pi~---~y~v~yr~~   93 (123)
                      +.+.++..   -...|||..
T Consensus       145 ~~~~~~~~~~~~~v~W~k~~  164 (256)
T 1nqb_A          145 SSQSIVHSNGNTYLEWYLQK  164 (256)
T ss_dssp             ESSCCBCTTSCBCEEEEEEC
T ss_pred             ecCcccccccceEEEEEEEC
Confidence            98765531   134467753

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.70  E-value=5.7e-08  Score=60.36  Aligned_cols=47  Identities=19%  Similarity=0.212  Sum_probs=38.2

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .++|+.+.. ......|.|.+++.+|+|.|+|.|.| .|.....+.|..
T Consensus        57 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V  104 (108)
T 3m45_A           57 RDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTV  104 (108)
T ss_dssp             CCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEE
T ss_pred             ccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEE
Confidence            456888653 33578999999999999999999999 898888776654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.70  E-value=5.7e-08  Score=71.42  Aligned_cols=73  Identities=15%  Similarity=0.291  Sum_probs=51.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCcee-------EEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCC-cc
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKH-------RAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPL-EE   85 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-------~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi-~~   85 (123)
                      .....|.|.+++.+|+|.|+|.|.|..|..       ...+.|...|.+|.+.... ....+..+.|.|.+.+.+|. ..
T Consensus        71 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~  150 (327)
T 2wng_A           71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDIT  150 (327)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCE
T ss_pred             CceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcE
Confidence            345689999999999999999999997752       2355666677776655321 12357889999998876543 24


Q ss_pred             eE
Q psy17207         86 FK   87 (123)
Q Consensus        86 y~   87 (123)
                      +.
T Consensus       151 v~  152 (327)
T 2wng_A          151 LK  152 (327)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.69  E-value=5.2e-08  Score=71.83  Aligned_cols=76  Identities=13%  Similarity=-0.017  Sum_probs=54.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE--eccCCCceeecCCCCCCCCeEEEEEEeCC--CCCCcceEEEeEEc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKI   93 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l--~~~P~p~~~~~~~~~~~~~~~~L~w~~~s--~~pi~~y~v~yr~~   93 (123)
                      +.|+|.+++..|+|.|+|+|.|..+.....+.|  ..+|.+|....-........+.+.|.++.  +.+ ..|+|+|+..
T Consensus        61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~-~~Y~l~~~~~  139 (313)
T 2d9q_B           61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLP-TSFTLKSFKS  139 (313)
T ss_dssp             EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEEC
T ss_pred             EEEEEeccCCCccceEEeeecCCCceeEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCc-eeEEEEEEec
Confidence            789999999999999999998877765554444  45777776443111113578999999753  344 4699999876


Q ss_pred             C
Q psy17207         94 P   94 (123)
Q Consensus        94 ~   94 (123)
                      .
T Consensus       140 ~  140 (313)
T 2d9q_B          140 R  140 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.69  E-value=2.2e-08  Score=62.59  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +..+.++.+..  ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus        51 ~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   98 (108)
T 3kvq_A           51 LVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII   98 (108)
T ss_dssp             CCCBTTEEEET--TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEE
T ss_pred             cccCCCeEEeC--CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEE
Confidence            44456665542  3468999999999999999999999999998876654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.69  E-value=8.4e-08  Score=65.18  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=42.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .++|+.+...+..+.|.|.+++ .+|+|.|+|.|.|.+|....++.|..
T Consensus       140 ~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          140 SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             TTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence            5689988887778899999999 79999999999999999999877753

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.69  E-value=1.1e-07  Score=63.06  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=39.9

Q ss_pred             CCCEEEEEcC------CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--c-cCCCcee
Q psy17207          6 TERRIMETRG------SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--G-KPNPAIF   59 (123)
Q Consensus         6 d~R~~i~~~~------~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~-~P~p~~~   59 (123)
                      ..|+.+....      ....|.|+++...|+|.|+|+|.|..|..+.++.|.  + +|..|.+
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~~  119 (126)
T 2dav_A           57 GKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI  119 (126)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCSCCCC
T ss_pred             CceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCeE
Confidence            4566664211      257899999999999999999999999998866554  4 4444443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.69  E-value=3.6e-08  Score=67.05  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcc-cCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+...+..+.|.|.+ +..+|+|.|+|.|.|.+|....++.|..
T Consensus       144 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             EECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEE
Confidence            45667888887777789999999 9999999999999999999998887754

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.69  E-value=4.9e-08  Score=67.00  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=43.6

Q ss_pred             ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+... +....|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  208 (212)
T 2r15_A          157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  208 (212)
T ss_dssp             EECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEE
Confidence            4566788887654 66789999999999999999999999999999887765

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.69  E-value=2.5e-07  Score=65.41  Aligned_cols=86  Identities=12%  Similarity=0.077  Sum_probs=56.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE----EEEEeccC------------CCceeecCCC---
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA----YLELSGKP------------NPAIFRSHPQ---   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~----~i~l~~~P------------~p~~~~~~~~---   64 (123)
                      ++|+.+..+  +...+|+|.+++.+|+|.|+|.|.|..+....    .+.|...|            .++.+...+.   
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (247)
T 2ghw_B           67 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS  146 (247)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEE
T ss_pred             cCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEE
Confidence            478888653  45778999999999999999999998443322    34444332            1222221111   


Q ss_pred             CCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         65 GRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        65 ~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ...+..+.|.|.+.+.++. . ..|||..
T Consensus       147 v~~G~~v~L~C~~~~~~~~-~-v~W~k~~  173 (247)
T 2ghw_B          147 LSPGERATLSCRASQSVRS-N-LAWYQQK  173 (247)
T ss_dssp             ECTTSCEEEEEEESSCCTT-C-EEEEEEC
T ss_pred             ecCCCcEEEEEEeCCCccc-e-EEEEEEC
Confidence            1257889999999876654 3 4467754

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.69  E-value=3.6e-07  Score=63.24  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=52.3

Q ss_pred             CCEEEEEEccc-CCCCCeeEEEEEEcCCceeEEEEEEec--c----CCCceeecCCCC---CCCCeEEEEEEeCCCCCCc
Q psy17207         15 GSRHTLMIRKV-VASDFGNYSCEATNPMGKHRAYLELSG--K----PNPAIFRSHPQG---RLPNSYNITWMVSSYTPLE   84 (123)
Q Consensus        15 ~~~~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~~i~l~~--~----P~p~~~~~~~~~---~~~~~~~L~w~~~s~~pi~   84 (123)
                      +....|.|.++ ...|+|.|+|.|.|..|.....+.|..  .    |.+|.+...+..   ..+..+.|.|.+.+.++. 
T Consensus        60 ~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-  138 (212)
T 2yd6_A           60 GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-  138 (212)
T ss_dssp             GTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-
T ss_pred             CCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-
Confidence            45678999999 499999999999999999887766553  2    223444332221   146789999999877655 


Q ss_pred             ceEEEeE
Q psy17207         85 EFKIKYR   91 (123)
Q Consensus        85 ~y~v~yr   91 (123)
                      .+. ||+
T Consensus       139 ~v~-W~~  144 (212)
T 2yd6_A          139 EIT-WFK  144 (212)
T ss_dssp             EEE-EEE
T ss_pred             eEE-EEE
Confidence            344 444

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.69  E-value=1.7e-07  Score=67.76  Aligned_cols=89  Identities=20%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCC----------------Cc-eeecCC--
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN----------------PA-IFRSHP--   63 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~----------------p~-~~~~~~--   63 (123)
                      ++|+.+...+....|+|.+++.+|+|.|.|.|.|..+...   ..+.|...|.                |. .+...+  
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE  148 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE
T ss_pred             CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE
Confidence            5799887666678999999999999999999999865321   2344544331                11 111111  


Q ss_pred             CCCCCCeEEEEEEeCCCCCCcceEEEeEEcC
Q psy17207         64 QGRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (123)
Q Consensus        64 ~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~   94 (123)
                      ....+..+.|.|.+.+.++......|||...
T Consensus       149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~  179 (264)
T 2gjj_A          149 VVKTGASVKISCKASGYSFTGYFINWVKKNS  179 (264)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECT
T ss_pred             EEcCCCcEEEEEEEeCCccCCeEEEEEEECC
Confidence            1225788999999876654223466787753

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.68  E-value=9.8e-08  Score=65.77  Aligned_cols=75  Identities=11%  Similarity=0.023  Sum_probs=51.2

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee------EEEEEEeccCCCceeecCCCCCCCCeEEEEEEe
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSGKPNPAIFRSHPQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~   77 (123)
                      .+|+.+..+  ....+|.|.+++.+|+|.|+|.+.|..|..      ...+.|...|.+|.+........+..+.|.|.+
T Consensus        68 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~  147 (214)
T 2zg1_A           68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSL  147 (214)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEEC
T ss_pred             cCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEe
Confidence            478877532  235589999999999999999999986432      234555565555554432222357889999998


Q ss_pred             CCC
Q psy17207         78 SSY   80 (123)
Q Consensus        78 ~s~   80 (123)
                      .+.
T Consensus       148 ~~~  150 (214)
T 2zg1_A          148 PGS  150 (214)
T ss_dssp             TTC
T ss_pred             ccC
Confidence            654

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.68  E-value=1.7e-08  Score=71.02  Aligned_cols=49  Identities=22%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      |..++|+..  ......|.|.+++.+|+|.|+|+|.|.+|.+..++.|.+.
T Consensus       158 l~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          158 ISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             ECCCCCCCC--SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCCCceEc--CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            444556533  2335679999999999999999999999999999998763

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.68  E-value=1.2e-07  Score=65.15  Aligned_cols=75  Identities=15%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeE----EEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...+.|.|.+++.+|+|.|+|.|.|..|...    ..+.|.+.+.+|.+...+  ....+..+.|.|.+.+.+|  .|. 
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~--~~~-  131 (196)
T 2d3v_A           55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFD--RFI-  131 (196)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCCS--EEE-
T ss_pred             ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCC--EEE-
Confidence            4567899999999999999999999988543    345555544445444322  1235788999999987763  344 


Q ss_pred             EeEE
Q psy17207         89 KYRK   92 (123)
Q Consensus        89 ~yr~   92 (123)
                      ||+.
T Consensus       132 W~k~  135 (196)
T 2d3v_A          132 LTEE  135 (196)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            4443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.68  E-value=5e-08  Score=66.08  Aligned_cols=51  Identities=25%  Similarity=0.374  Sum_probs=44.5

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...+....|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            355678888887787889999999999999999999999999998887753

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.67  E-value=9.2e-09  Score=66.20  Aligned_cols=48  Identities=29%  Similarity=0.491  Sum_probs=39.9

Q ss_pred             CCCEEEE--EcCC--EEEEEEcccCCCCC-eeEEEEEEcCCceeEEEEEEecc
Q psy17207          6 TERRIME--TRGS--RHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         6 d~R~~i~--~~~~--~~~L~I~~v~~~D~-G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      +.||.+.  ....  .+.|.|.+++..|+ |.|+|.|.|.+|.+...+.|...
T Consensus        60 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~  112 (122)
T 2cry_A           60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  112 (122)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             CCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEEC
Confidence            5788773  2222  66899999999999 99999999999999999888763

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.67  E-value=9e-08  Score=59.39  Aligned_cols=47  Identities=23%  Similarity=0.388  Sum_probs=38.6

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|    |....++.|..
T Consensus        47 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V   93 (100)
T 2yuv_A           47 EIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV   93 (100)
T ss_dssp             BCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEE
T ss_pred             ECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEE
Confidence            466678999988888889999999999999999999    56666555543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.67  E-value=3.6e-08  Score=62.25  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|.+.+++.|.+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEE
Confidence            568999999999999999999999999999887764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.67  E-value=8.3e-08  Score=66.40  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeCCCC
Q psy17207          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYT   81 (123)
Q Consensus         7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~s~~   81 (123)
                      +|+.+...   .....|.|.+++.+|+|.|+|.|.| .|.....+.|..  +|..+..........+..+.|.|.+.+++
T Consensus        66 ~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P  144 (222)
T 3sbw_C           66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYP  144 (222)
T ss_dssp             SSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBS
T ss_pred             CceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCC
Confidence            56665422   2457899999999999999999999 677666665543  34333322211122467899999997754


Q ss_pred             C
Q psy17207         82 P   82 (123)
Q Consensus        82 p   82 (123)
                      +
T Consensus       145 ~  145 (222)
T 3sbw_C          145 K  145 (222)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.66  E-value=2.7e-07  Score=63.13  Aligned_cols=78  Identities=13%  Similarity=0.245  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe--ccCCCceeecCC-CCCCCCeEEEEEEeCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS--GKPNPAIFRSHP-QGRLPNSYNITWMVSSYT   81 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~--~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~   81 (123)
                      ++|+.+..+   +.|.|.+++..|+|.|+|.+.|.. |.....+.|.  ..+..|.+.... ....+..+.|.|.+.+.+
T Consensus        62 ~~r~~~~~~---~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~p  138 (208)
T 3r4d_A           62 SGREIIYSN---GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG  138 (208)
T ss_dssp             CSSEEECTT---SCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTT
T ss_pred             cceeEEecC---CeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCC
Confidence            456666532   479999999999999999999995 5555555544  344444444322 233578899999998865


Q ss_pred             CCcceEE
Q psy17207         82 PLEEFKI   88 (123)
Q Consensus        82 pi~~y~v   88 (123)
                      |  .|.|
T Consensus       139 p--~i~W  143 (208)
T 3r4d_A          139 A--NIQW  143 (208)
T ss_dssp             C--EEEE
T ss_pred             C--ceEE
Confidence            4  4554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.66  E-value=1e-07  Score=65.02  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcce
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEF   86 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y   86 (123)
                      +|+.+.  ...++|+|.+++.+|+|.|+|.|.|..|.....+.|..++..|.+.....   .  ..|.|.+.+.++. .|
T Consensus        51 ~R~~~~--~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i~~~~~---~--~~L~C~~~~~p~p-~i  122 (171)
T 1ccz_A           51 NRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECS---N--ATLTCEVLEGTDV-EL  122 (171)
T ss_dssp             TSEEEC--TTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEEEEETT---T--TEEEEECSSCSSC-EE
T ss_pred             CcEEEe--CCCCeEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEEEEecC---C--cEEEEEeCCCCCc-EE
Confidence            466553  23468999999999999999999999996555666666555454432111   1  2789998776443 45


Q ss_pred             EE
Q psy17207         87 KI   88 (123)
Q Consensus        87 ~v   88 (123)
                      .|
T Consensus       123 ~W  124 (171)
T 1ccz_A          123 KL  124 (171)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.65  E-value=1.1e-07  Score=68.97  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCC-----------CceeecC---CCCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN-----------PAIFRSH---PQGRLP   68 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~-----------p~~~~~~---~~~~~~   68 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|..|...   ..+.|...|.           |+.....   .....+
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G  149 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPG  149 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTT
T ss_pred             CCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCC
Confidence            5799887767778999999999999999999999865421   2333433321           1111111   111257


Q ss_pred             CeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         69 NSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        69 ~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ..+.|.|.+.+.+|......|||..
T Consensus       150 ~~v~L~C~~~g~~~~~~~v~W~k~~  174 (276)
T 3auv_A          150 GSLRLSCAASGFTISDYWIHWVRQA  174 (276)
T ss_dssp             CCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CeEEEEEEecCccCCCCEEEEEEcC
Confidence            8899999997765433345567764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.65  E-value=8.2e-08  Score=69.57  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+... +....|.|.+++..|+|.|+|.|.|.+|....++.|..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  313 (317)
T 2y25_A          262 ALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  313 (317)
T ss_dssp             EECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            4566788888654 66789999999999999999999999999999887765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.64  E-value=1.4e-07  Score=64.30  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE----EEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCCCcceEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKY   90 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~pi~~y~v~y   90 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|...    ..+.|.+.+.+|.+...+  ....+..+.|.|.+.+.++  .|. ||
T Consensus        51 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~--~~~-w~  127 (184)
T 2gi7_A           51 QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFD--QFA-LY  127 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCC--EEE-EE
T ss_pred             ccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCc--EEE-EE
Confidence            46899999999999999999999887432    345554444444443221  2235789999999765543  454 45


Q ss_pred             EE
Q psy17207         91 RK   92 (123)
Q Consensus        91 r~   92 (123)
                      +.
T Consensus       128 k~  129 (184)
T 2gi7_A          128 KE  129 (184)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.64  E-value=9.3e-08  Score=72.29  Aligned_cols=63  Identities=16%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      .|+.+ ..   ++|.|.+++.+|+|.|+|+|.|..|.+...+.|.+.+.+         ..+..+.|.|.+.+.|+
T Consensus       294 ~r~~~-~~---~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~---------~~g~~~~l~C~~~g~P~  356 (361)
T 2xot_A          294 GSVSV-RN---GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT---------LHGHHDTLNAAADPWSH  356 (361)
T ss_dssp             SSEEE-ET---TEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC---------CC---------------
T ss_pred             CceEe-ec---CeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee---------ccCCceEEEEEeCCCCC
Confidence            47777 33   479999999999999999999999999998888764322         23456788999877654

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.64  E-value=9e-08  Score=63.40  Aligned_cols=51  Identities=20%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCc
Q psy17207          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPA   57 (123)
Q Consensus         6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~   57 (123)
                      ++|+.+. ......+|.|.+++.+|+|.|+|.|.|. |.....+.|.  .+|.+|
T Consensus        90 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A           90 DNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             CTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEECCCC--
T ss_pred             cCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEEeCCCCC
Confidence            5788764 3345679999999999999999999999 8888776655  455554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.64  E-value=2.6e-08  Score=70.13  Aligned_cols=44  Identities=11%  Similarity=0.033  Sum_probs=36.1

Q ss_pred             ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus         4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      ..+.|+.+..+|....|.|.+++.+|+|.|+|+|+|.+|++++.
T Consensus       152 ~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          152 AANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             ----CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             cccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            34578888777877888899999999999999999999999875

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=7.2e-08  Score=61.48  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=37.4

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|+.+...+   .|.|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus        52 ~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (118)
T 2eo9_A           52 QDSRIKQLENG---VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEV   96 (118)
T ss_dssp             TSTTEEEEETT---EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEE
T ss_pred             CCCeEEEccCC---EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEE
Confidence            35788776544   8999999999999999999999999887655543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.64  E-value=2.3e-07  Score=63.00  Aligned_cols=72  Identities=18%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCCCCCCcceEEEeE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s~~pi~~y~v~yr   91 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|. |.....+.|...-. |.+...+   ....+..+.|.|.+.+.++. .+. ||+
T Consensus        54 ~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~-W~~  128 (190)
T 2wv3_A           54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAA-PDITGHKRSENKNEGQDAMMYCKSVGYPHP-EWM-WRK  128 (190)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECC-CEEEEECSEEEEETTSCEEEEEEEECSSCC-EEE-EEE
T ss_pred             ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecC-CcccccCCcceeeCCCcEEEEEEeCccCCC-ceE-EEE
Confidence            3578999999999999999999999 88887766654222 2222111   11256789999999877654 444 444

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.63  E-value=2.5e-07  Score=67.26  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCc---eeE----EEEEEeccC------------CCceeecCC-
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG---KHR----AYLELSGKP------------NPAIFRSHP-   63 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~~~----~~i~l~~~P------------~p~~~~~~~-   63 (123)
                      ++|+.+..  .+...+|+|.+++.+|+|.|.|.|.|..|   ...    ..+.|...|            .++.+...+ 
T Consensus        91 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~  170 (282)
T 1qok_A           91 QGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPA  170 (282)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECS
T ss_pred             cCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCC
Confidence            47888865  34568999999999999999999999987   211    234454433            122222111 


Q ss_pred             --CCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         64 --QGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        64 --~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                        ....+..+.|.|.+.+.+|   ...|||..
T Consensus       171 ~~~v~~G~~v~L~C~~~~~~~---~v~W~k~~  199 (282)
T 1qok_A          171 IMSASPGEKVTITCSASSSVS---YMHWFQQK  199 (282)
T ss_dssp             EEEECTTCCEEEEEEESSCCS---CCEEEEEC
T ss_pred             EEEEcCCCcEEEEEEecCCCc---eEEEEEEC
Confidence              1225788999999876652   34467754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.63  E-value=2.6e-07  Score=63.44  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCC-cee----EEEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPM-GKH----RAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~-G~~----~~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~p   82 (123)
                      ...|.|.+++.+|+|.|+|.|.|.. |..    ...+.|.+.+.+|.+...+  ....+..+.|.|.+.+.+|
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~  129 (198)
T 1ugn_A           57 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFD  129 (198)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCS
T ss_pred             ccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCc
Confidence            4689999999999999999999988 632    2345555544444443221  1125788999999987733

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.6e-08  Score=61.63  Aligned_cols=45  Identities=29%  Similarity=0.404  Sum_probs=36.3

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|+.+..   .+.|.|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus        52 ~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2edj_A           52 RDPRATIQE---QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV   96 (100)
T ss_dssp             SCSSCEECT---TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEE
T ss_pred             CCCCEEEcC---CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEE
Confidence            345666543   347999999999999999999999999887766654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.62  E-value=2.2e-07  Score=66.39  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=50.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE--eccCCCceeecCCCCCCCCeEEEEEEeCCCCCCc
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLE   84 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l--~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~   84 (123)
                      .....|.|.+++.+|.|.|.|+|.|..|.....+.|  ...|..+.+... .......+ |.|.+.+..|..
T Consensus        56 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~  125 (210)
T 1gsm_A           56 TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVD  125 (210)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCC
T ss_pred             CCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCC
Confidence            456789999999999999999999999998776555  456655443322 22345667 999998766643

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.2e-07  Score=58.50  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus        62 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   97 (99)
T 2yr3_A           62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT   97 (99)
T ss_dssp             TEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEE
T ss_pred             CeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            467899999999999999999999999998876654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.62  E-value=1.2e-07  Score=58.28  Aligned_cols=45  Identities=31%  Similarity=0.572  Sum_probs=36.4

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +|..++||.+...+....|.|.+++..|+|.|+|.|    |....++.|
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l   91 (95)
T 2k1m_A           47 DISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDL   91 (95)
T ss_dssp             EECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEE
T ss_pred             ECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEE
Confidence            456678999988888889999999999999999999    445444444

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.62  E-value=2.2e-07  Score=63.59  Aligned_cols=72  Identities=17%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeC-CCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVS-SYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~-s~~pi~~y~v   88 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|..     ...+.|..  .+..|.+... ....+..+.|.|.+. ++++. .+. 
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~-~~~~g~~~~l~C~~~~g~P~p-~i~-  140 (201)
T 1dr9_A           64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF-EIPTSNIRRIICSTSGGFPEP-HLS-  140 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE-ECSSTTEEEEEEEEEEESSCE-EEE-
T ss_pred             CcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec-cCCCCCeEEEEEecCCccCCC-EEE-
Confidence            4689999999999999999999988754     23455543  3333333321 112367889999985 65544 344 


Q ss_pred             EeE
Q psy17207         89 KYR   91 (123)
Q Consensus        89 ~yr   91 (123)
                      ||+
T Consensus       141 W~k  143 (201)
T 1dr9_A          141 WLE  143 (201)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            344

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.61  E-value=2.6e-07  Score=65.90  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=54.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC----CceeEE--EEEEeccC-------------CCceeecCCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP----MGKHRA--YLELSGKP-------------NPAIFRSHPQ   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~----~G~~~~--~i~l~~~P-------------~p~~~~~~~~   64 (123)
                      ++|+.+..+  .....|.|.+++.+|+|.|+|.|.|.    .+....  .+.|...+             .++.+...+.
T Consensus        67 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~  146 (256)
T 3umt_A           67 KGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPS  146 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECS
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCC
Confidence            478887643  44678999999999999999999998    222222  23333210             1222222111


Q ss_pred             ---CCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         65 ---GRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        65 ---~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                         ...+..+.|.|.+.+.++.  ...|||..
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~~~--~v~W~k~~  176 (256)
T 3umt_A          147 SLSASLGERVSITCRASQDIGS--NLNWLQQK  176 (256)
T ss_dssp             EEEECTTCCEEEEEEESSCCTT--CEEEEEEC
T ss_pred             eEEEECCCCEEEEEEEecCCCc--EEEEEEEC
Confidence               1257889999999875543  45577764

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.61  E-value=1.1e-07  Score=65.61  Aligned_cols=83  Identities=19%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC-CceeE----EEEEEeccC-CCceeecCCC---CCCCCeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP-MGKHR----AYLELSGKP-NPAIFRSHPQ---GRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~----~~i~l~~~P-~p~~~~~~~~---~~~~~~~~L~w~   76 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|. .+...    ..+.|...+ .+|.+.....   ...+..+.|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL  136 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence            57998876677889999999999999999999973 22211    234443332 3444432111   113568999999


Q ss_pred             eCCCCCC-cceEE
Q psy17207         77 VSSYTPL-EEFKI   88 (123)
Q Consensus        77 ~~s~~pi-~~y~v   88 (123)
                      +.+..|. ..+.|
T Consensus       137 ~~g~~p~~~~v~W  149 (212)
T 1nfd_E          137 VNDFYPGSATVTW  149 (212)
T ss_dssp             EEEEBSSCCEEEE
T ss_pred             EEeeECCccEEEE
Confidence            8766332 34443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.61  E-value=2e-07  Score=73.38  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=58.3

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSSY   80 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s~   80 (123)
                      ++|+.+..  .+....|.|.+++.+|+|.|+|.|.|..|.....+.|.....| .+...+   ....+..+.|.|.+.+.
T Consensus        61 ~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p-~~~~~~~~~~v~~G~~v~l~C~~~~~  139 (585)
T 2ocw_A           61 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP-GLLNDTKVYTVDLGRTVTINCPFKTE  139 (585)
T ss_pred             eceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCc-cccCCCccEEEEcCCCEEEEEEecCC
Confidence            46887764  3445689999999999999999999999988877766643222 222111   11257889999999866


Q ss_pred             CCCcceEEEeEE
Q psy17207         81 TPLEEFKIKYRK   92 (123)
Q Consensus        81 ~pi~~y~v~yr~   92 (123)
                      +|...+. ||+.
T Consensus       140 ~~~~~v~-W~k~  150 (585)
T 2ocw_A          140 NAQKRKS-LYKQ  150 (585)
T ss_pred             CCCccEE-EEEC
Confidence            5544443 5554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.61  E-value=2.8e-07  Score=64.66  Aligned_cols=86  Identities=10%  Similarity=0.111  Sum_probs=51.2

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-------EEEEEeccCC---C------ceeecCC---CC
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-------AYLELSGKPN---P------AIFRSHP---QG   65 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-------~~i~l~~~P~---p------~~~~~~~---~~   65 (123)
                      ++|+.+.. .+....|+|.+++.+|+|.|+|.|.|..|...       ..+.|...+.   |      +.+...+   ..
T Consensus        60 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v  139 (238)
T 2p1y_A           60 PDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTV  139 (238)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEE
T ss_pred             cceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEE
Confidence            46888764 33466899999999999999999999876321       1344433221   0      0111111   11


Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      ..+..+.|.|.+.+.++.  ...|||..
T Consensus       140 ~~G~~v~L~C~~~~~p~~--~i~W~k~~  165 (238)
T 2p1y_A          140 WEGETAILNCSYENSAFD--YFPWYQQF  165 (238)
T ss_dssp             ETTSCEEEEEECCCTTCC--EEEEEEEC
T ss_pred             eCCCeEEEEEEEecCCCC--cEEEEEEC
Confidence            257889999998766542  35567764

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.61  E-value=6.2e-08  Score=61.95  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..|....++.|..
T Consensus        72 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V  108 (122)
T 3s35_X           72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  108 (122)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEE
Confidence            3568999999999999999999999999998776654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.61  E-value=3.2e-07  Score=65.43  Aligned_cols=87  Identities=11%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC------------CceeEE--EEEEeccCC------------Cc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP------------MGKHRA--YLELSGKPN------------PA   57 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~------------~G~~~~--~i~l~~~P~------------p~   57 (123)
                      .+|+.+..  .+....|+|.+++.+|+|.|.|.|.|.            .+....  .+.|...+.            ++
T Consensus        71 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  150 (256)
T 3juy_B           71 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEI  150 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCC
T ss_pred             cceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCccee
Confidence            36998873  355778999999999999999999997            222222  233333221            12


Q ss_pred             eeecCCC---CCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         58 IFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        58 ~~~~~~~---~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      .+...+.   ...+..+.|.|.+.+.++... .-|||..
T Consensus       151 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~-v~W~k~~  188 (256)
T 3juy_B          151 VLTQAPGTLSLSPGERATFSCRSSHSIRSRR-VAWYQHK  188 (256)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCC-EEEEEEC
T ss_pred             EEEecCCeEEEeCCCCEEEEEEECCCcCCee-EEEEEEC
Confidence            2221111   125789999999977544223 4467764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.61  E-value=1.2e-07  Score=72.04  Aligned_cols=83  Identities=17%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee---EEEEEEeccCCCceeecCCCC---CCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~i~l~~~P~p~~~~~~~~~---~~~~~~~L~w~~~s   79 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..|..   ...+.|...+.+|.+......   ..+..+.|.|.+.+
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g  142 (438)
T 1qgc_4           63 PDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  142 (438)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             cCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEcc
Confidence            478988776778899999999999999999999998743   234555443334443321111   13568999999866


Q ss_pred             C-CCCcceEE
Q psy17207         80 Y-TPLEEFKI   88 (123)
Q Consensus        80 ~-~pi~~y~v   88 (123)
                      . ++...+.|
T Consensus       143 ~~p~~~~v~W  152 (438)
T 1qgc_4          143 FYPKDINVKW  152 (438)
T ss_dssp             EBSSCEEEEE
T ss_pred             ccCCCcEEEE
Confidence            3 33224443

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.61  E-value=1.8e-07  Score=74.69  Aligned_cols=84  Identities=18%  Similarity=0.255  Sum_probs=57.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeecC-CCCCCCCeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSH-PQGRLPNSYNITWMV   77 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~~-~~~~~~~~~~L~w~~   77 (123)
                      +|..++|+.+...  .+.|.|.+++..|+|.|+|.|.|..|....   .+.|...|..+..... .....+..+.|.|.+
T Consensus       506 ~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~  583 (642)
T 1e07_A          506 SLPVSPRLQLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS  583 (642)
T ss_pred             eCCCCCcEEEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe
Confidence            3556677777532  468999999999999999999999998643   3444444443332211 111256789999999


Q ss_pred             CCCCCCcceEE
Q psy17207         78 SSYTPLEEFKI   88 (123)
Q Consensus        78 ~s~~pi~~y~v   88 (123)
                      .+.++. .+.|
T Consensus       584 ~g~p~p-~v~W  593 (642)
T 1e07_A          584 ASNPSP-QYSW  593 (642)
T ss_pred             ccCCCC-eEEE
Confidence            887665 4443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.60  E-value=2.7e-07  Score=62.64  Aligned_cols=81  Identities=17%  Similarity=0.095  Sum_probs=54.0

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCC--ceeecC---CCCCCCCeEEEEEEe
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNP--AIFRSH---PQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p--~~~~~~---~~~~~~~~~~L~w~~   77 (123)
                      +.|+.+.. .+....|.|.+++..|+|.|+|.|.|..|.....+.|..  .|..  +.+...   .....+..+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (197)
T 2j8h_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (197)
T ss_dssp             SSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE
Confidence            35776653 455679999999999999999999999999887766553  2211  111000   001236778999998


Q ss_pred             CCCCCCcceE
Q psy17207         78 SSYTPLEEFK   87 (123)
Q Consensus        78 ~s~~pi~~y~   87 (123)
                      .+.++. .+.
T Consensus       129 ~g~p~p-~i~  137 (197)
T 2j8h_A          129 SGKPDP-VIT  137 (197)
T ss_dssp             EEESCC-EEE
T ss_pred             EecCCC-cEE
Confidence            876554 344

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.60  E-value=7.8e-08  Score=77.58  Aligned_cols=51  Identities=24%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.||.+...+...+|.|.++...|+|.|+|.|+|.+|++++.+.|.+
T Consensus       522 el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          522 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEEE
Confidence            577889999998888999999999999999999999999999999988764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.60  E-value=6e-08  Score=66.17  Aligned_cols=78  Identities=17%  Similarity=0.248  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE--E--EEEEeccCCCceeecCCCCCCCCeEEEEEEe-CCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--A--YLELSGKPNPAIFRSHPQGRLPNSYNITWMV-SSY   80 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~--~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~-~s~   80 (123)
                      .+|+.+..    ..|.|.+++..|+|.|+|.|.|..|...  .  .+.+...|..+..........+..+.|.|.+ .+.
T Consensus        60 ~~r~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  135 (209)
T 1nbq_A           60 EDRVTFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS  135 (209)
T ss_dssp             TTTCEEET----TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCB
T ss_pred             cCceEeec----cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCC
Confidence            45666652    6899999999999999999999876332  2  3444455554433221112256789999997 555


Q ss_pred             CCCcceEE
Q psy17207         81 TPLEEFKI   88 (123)
Q Consensus        81 ~pi~~y~v   88 (123)
                      ++. .+.|
T Consensus       136 p~~-~v~W  142 (209)
T 1nbq_A          136 PPS-EYTW  142 (209)
T ss_dssp             SCC-EEEE
T ss_pred             CCc-eeEE
Confidence            544 4553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.60  E-value=4.3e-07  Score=62.11  Aligned_cols=75  Identities=13%  Similarity=0.073  Sum_probs=49.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeE----EEEEEeccCCCceeecCCC--CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .....|.|.+++.+|+|.|+|.|.|..|...    ..+.|.+.+.+|.+...+.  ...++.+.|.|.+.+.+|  .|. 
T Consensus        54 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~-  130 (188)
T 1oll_A           54 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MFL-  130 (188)
T ss_dssp             CCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCS--EEE-
T ss_pred             cceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCC--EEE-
Confidence            3467899999999999999999999766432    3455554443444432221  125789999999866443  344 


Q ss_pred             EeEE
Q psy17207         89 KYRK   92 (123)
Q Consensus        89 ~yr~   92 (123)
                      |||.
T Consensus       131 w~k~  134 (188)
T 1oll_A          131 LLKE  134 (188)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            4554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.60  E-value=1.5e-07  Score=67.04  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceeec-CCC--CCCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s   79 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..+...   ..+.|...+.+|.+.. .+.  ...+..+.|.|.+.+
T Consensus        97 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  176 (252)
T 3bkj_L           97 PDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  176 (252)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEee
Confidence            4788887667778999999999999999999999876432   2344544333444332 111  113568999999876


Q ss_pred             CCC
Q psy17207         80 YTP   82 (123)
Q Consensus        80 ~~p   82 (123)
                      ..|
T Consensus       177 ~~p  179 (252)
T 3bkj_L          177 FYP  179 (252)
T ss_dssp             EBS
T ss_pred             EeC
Confidence            434

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.59  E-value=2e-07  Score=72.69  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEecc-CCCceeecCC---CCCCCCeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGK-PNPAIFRSHP---QGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~~-P~p~~~~~~~---~~~~~~~~~L~w~   76 (123)
                      ++||.+...+....|.|.+++.+|+|.|+|.|.|..|..     ...+.|... ..+|.+...+   ....+..+.|.|.
T Consensus        58 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~  137 (523)
T 2rcj_C           58 PTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCL  137 (523)
T ss_pred             CCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEE
Confidence            478886666667899999999999999999999988742     223444332 2234332111   1124668999999


Q ss_pred             eCCCCCC-cceE
Q psy17207         77 VSSYTPL-EEFK   87 (123)
Q Consensus        77 ~~s~~pi-~~y~   87 (123)
                      +.+.+|. ..+.
T Consensus       138 ~~g~~p~~~~v~  149 (523)
T 2rcj_C          138 ISDFYPGAVTVA  149 (523)
T ss_pred             eccccCCceEEE
Confidence            9876653 3444

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.59  E-value=4.8e-08  Score=73.76  Aligned_cols=66  Identities=20%  Similarity=0.135  Sum_probs=47.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s~~pi   83 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|.......|..... |.+....   ....+..+.|.|.+.+.++.
T Consensus       257 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~-P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p  325 (384)
T 3kld_A          257 NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ-PNWVQIINDIHVAMEESVFWECKANGRPKP  325 (384)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE-EEEEECCCCEEECTTCCEEEECEEEEESCC
T ss_pred             CcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC-CccccCCCceEecCCCCEEEEeECCccCCC
Confidence            468999999999999999999999999987766553211 1222111   11246789999998876554

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.2e-07  Score=57.69  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=40.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE--EEEEeccCCCc
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPA   57 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~i~l~~~P~p~   57 (123)
                      +|..+.||.+...+....|.|.+++.+|+|.|+|.    +|....  .+.|.+.|.+|
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           47 ELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             BCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEECSCCCC
T ss_pred             ECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEeCccCCC
Confidence            46677899998777788999999999999999998    555554  44555666554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.59  E-value=1.8e-07  Score=67.40  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCC------Cc---------------eee-
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPN------PA---------------IFR-   60 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~------p~---------------~~~-   60 (123)
                      ++|+.+...+....|+|.+++.+|+|.|.|.|.|..+...   ..+.|...+.      ||               .+. 
T Consensus        78 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~  157 (268)
T 1x9q_A           78 PDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDE  157 (268)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEE
T ss_pred             cccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEEC
Confidence            5799887666778999999999999999999999865322   2333333221      11               111 


Q ss_pred             c-CCCCCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         61 S-HPQGRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        61 ~-~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                      . ......+..+.|.|.+.+.++......|||..
T Consensus       158 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~  191 (268)
T 1x9q_A          158 TGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQS  191 (268)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEecCccccccEEEEEEeC
Confidence            0 11122578999999987665433345577764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.58  E-value=2.3e-07  Score=73.12  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             cCCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecC--CCCCCCCeEEEEEEeCC
Q psy17207          5 TTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH--PQGRLPNSYNITWMVSS   79 (123)
Q Consensus         5 ~d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~--~~~~~~~~~~L~w~~~s   79 (123)
                      .++|+.+...  .....|.|.+++.+|+|.|+|+| |..|.....+.|.....||.+...  .....+..+.|.|.+.+
T Consensus       391 ~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~  468 (585)
T 2ocw_A          391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPC  468 (585)
T ss_pred             cCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecC
Confidence            3567777642  22345999999999999999999 999998887777654333333221  11225788999999864

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.58  E-value=2.4e-07  Score=64.26  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCC-ceeEEEEEEe--ccCCCceeecCCC---CCCCCeE-EEEEEe-CCCCCCcceEEEe
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPM-GKHRAYLELS--GKPNPAIFRSHPQ---GRLPNSY-NITWMV-SSYTPLEEFKIKY   90 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~i~l~--~~P~p~~~~~~~~---~~~~~~~-~L~w~~-~s~~pi~~y~v~y   90 (123)
                      .|.|.+++.+|+|.|+|.|.|.. |.....+.|.  ..|..+.+.....   ...+..+ .|.|.+ .+.++. .+. ||
T Consensus        78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~i~-W~  155 (231)
T 2pet_A           78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-KIT-WY  155 (231)
T ss_dssp             CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-EEE-EE
T ss_pred             eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-EEE-EE
Confidence            49999999999999999999997 7777765554  4666666554322   1245556 999998 555443 344 44


Q ss_pred             E
Q psy17207         91 R   91 (123)
Q Consensus        91 r   91 (123)
                      +
T Consensus       156 ~  156 (231)
T 2pet_A          156 R  156 (231)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=98.58  E-value=3.1e-07  Score=57.51  Aligned_cols=66  Identities=17%  Similarity=0.367  Sum_probs=53.3

Q ss_pred             ccCCCc-eeecCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         52 GKPNPA-IFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        52 ~~P~p~-~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +.|.|. .|.+.+.+. .++..|.|.+++.+||.+|++.||++.. +..|.++.+.+   +.|++.++.|-+
T Consensus         4 ~~~gpa~v~is~~~s~-pdsh~iqW~~~s~s~I~eyiL~~R~k~~-~g~Wke~~Ip~---h~nSYtI~GL~P   70 (98)
T 1oww_A            4 GSSGPVEVFITETPSQ-PNSHPIQWNAPQPSHISKYILRWRPKNS-VGRWKEATIPG---HLNSYTIKGLKP   70 (98)
T ss_dssp             --CCCCEEECCCCSSC-TTCEEEEEECCSSSCEEEEEEEEEETTC-SSCCEEEEECS---SCCEEEECSCCS
T ss_pred             CCCcceEEEecCCCCC-CCccceEEecCCCCCceEEEEEEEEcCC-CCceeEEEecC---ccceEEEecCCC
Confidence            456777 566555544 8999999999999999999999999876 68899998887   888888887654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.58  E-value=1.1e-07  Score=66.88  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEe--ccCCCceeecCCC----CCCCCeEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELS--GKPNPAIFRSHPQ----GRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~--~~P~p~~~~~~~~----~~~~~~~~L~   74 (123)
                      .+|+.+... ....|.|.+++.+|+|.|+|.|.|..|..     ...+.|.  ..|.|+.+.....    ...+..+.|.
T Consensus        79 ~~r~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~  157 (250)
T 2fbo_J           79 LGRASVANL-AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMT  157 (250)
T ss_dssp             TTTEECSCT-TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEEC
T ss_pred             CceEEeccC-CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEE
Confidence            355555432 24579999999999999999999988753     3444444  4433433322111    1247889999


Q ss_pred             EEeCCCCCCcceEEEeEE
Q psy17207         75 WMVSSYTPLEEFKIKYRK   92 (123)
Q Consensus        75 w~~~s~~pi~~y~v~yr~   92 (123)
                      |.+.+.++. .+. ||+.
T Consensus       158 C~~~g~p~p-~v~-W~k~  173 (250)
T 2fbo_J          158 CPCTDCANA-NVT-WYTG  173 (250)
T ss_dssp             CCEESCTTC-EEE-EEEE
T ss_pred             EEecCCCCC-eeE-EEeC
Confidence            999875554 445 4554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.58  E-value=3.1e-07  Score=65.74  Aligned_cols=86  Identities=17%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE------EEEEEec-----------------cCCCceee
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR------AYLELSG-----------------KPNPAIFR   60 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~------~~i~l~~-----------------~P~p~~~~   60 (123)
                      ++|+.+.  ......+|.|.+++.+|+|.|+|.|.|..|...      ..+.|..                 .+.++.+.
T Consensus        62 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~  141 (256)
T 3tf7_C           62 VNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT  141 (256)
T ss_dssp             STTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE
T ss_pred             CCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE
Confidence            5688773  345678899999999999999999999876321      1233333                 11233332


Q ss_pred             cCCC---CCCCCeEEEEEEeCCCCCCcceEEEeEEcC
Q psy17207         61 SHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (123)
Q Consensus        61 ~~~~---~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~   94 (123)
                      ..+.   ...+..+.|.|.+.+..|   ...|||...
T Consensus       142 ~~p~~~~v~~G~~v~L~C~~~~~~~---~v~W~k~~~  175 (256)
T 3tf7_C          142 QSPRNKVTVTGENVTLSCRQTNSHN---YMYWYRQDT  175 (256)
T ss_dssp             ESCSEEEEETTCCEEECEEECSCCS---EEEEEEECT
T ss_pred             ecCCEEEEeCCCcEEEEEEcCCCce---EEEEEEECC
Confidence            2221   125788999999876533   355677543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.58  E-value=1.7e-07  Score=63.23  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=50.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC-CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~-~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..+.....+.|..  .+........ ...+..+.|.|.+.+.+|...|.|
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W  123 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHI--GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY  123 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEEC--SSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEE
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeC--CCceeeCCCceecCCCCEEEEEEcCCCCCceEEEE
Confidence            4568999999999999999999998887766666653  2222222111 125788999999988777655553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.58  E-value=3.1e-07  Score=67.24  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCce-------eEEEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGK-------HRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSS   79 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~-------~~~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s   79 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|.       ....+.|.+.+.+|.+...+  ....+..+.|.|.+..
T Consensus       172 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~  244 (316)
T 3vh8_G          172 SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRS  244 (316)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESS
T ss_pred             ceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCC
Confidence            4568999999999999999999999884       33456666655555544322  2235789999999874

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.57  E-value=6.6e-07  Score=63.74  Aligned_cols=87  Identities=15%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee----E--EEEEEeccC-----------CCceeecCCC--
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH----R--AYLELSGKP-----------NPAIFRSHPQ--   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~----~--~~i~l~~~P-----------~p~~~~~~~~--   64 (123)
                      .+|+.+..+  +....|.|.+++.+|+|.|+|.|.|..|..    .  ..+.|...+           .++.+...+.  
T Consensus        72 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~  151 (257)
T 3gkz_A           72 KSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIM  151 (257)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEE
T ss_pred             cccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceE
Confidence            468887643  456789999999999999999999972211    1  133443331           1222222111  


Q ss_pred             -CCCCCeEEEEEEeCCCCCCcceEEEeEEc
Q psy17207         65 -GRLPNSYNITWMVSSYTPLEEFKIKYRKI   93 (123)
Q Consensus        65 -~~~~~~~~L~w~~~s~~pi~~y~v~yr~~   93 (123)
                       ...+..+.|.|.+.+.++... ..|||..
T Consensus       152 ~v~~G~~v~L~C~~~~~~~~~~-v~W~k~~  180 (257)
T 3gkz_A          152 SASPGEKVTLTCSASSSVSSSH-LYWYQQK  180 (257)
T ss_dssp             EECTTCCEEEEEEESSCCCGGG-EEEEEEC
T ss_pred             EEeCCCcEEEEEEEccCccceE-EEEEEEC
Confidence             125789999999987554323 4467764

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.57  E-value=2.4e-07  Score=64.05  Aligned_cols=76  Identities=17%  Similarity=0.270  Sum_probs=50.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC--ceeEEEEEEec-cCCCceee-cC--CCCCCCCeEEEEEEe
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM--GKHRAYLELSG-KPNPAIFR-SH--PQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~--G~~~~~i~l~~-~P~p~~~~-~~--~~~~~~~~~~L~w~~   77 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|+|.|.|..  |.. ..+.|.. .+.+|.+. ..  .....+..+.|.|.+
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  142 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQG-TLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  142 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCC-EEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEE
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccc-eEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEE
Confidence            578888642  346799999999999999999999964  221 2344443 23344332 11  112256889999999


Q ss_pred             CCCCC
Q psy17207         78 SSYTP   82 (123)
Q Consensus        78 ~s~~p   82 (123)
                      .+..|
T Consensus       143 ~g~~P  147 (210)
T 3d9a_H          143 KGYFP  147 (210)
T ss_dssp             EEEBS
T ss_pred             eeEec
Confidence            77533

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.57  E-value=7.6e-08  Score=67.35  Aligned_cols=83  Identities=17%  Similarity=0.225  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee--E-E--EEEEeccC-CCceeec-CCC--CCCCCeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH--R-A--YLELSGKP-NPAIFRS-HPQ--GRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~-~--~i~l~~~P-~p~~~~~-~~~--~~~~~~~~L~w~   76 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..|..  . .  .+.|...| .+|.+.. .+.  ...+..+.|.|.
T Consensus        79 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  158 (234)
T 2j6e_L           79 PDRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCL  158 (234)
T ss_dssp             CTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEEC
T ss_pred             cccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEE
Confidence            468888766677899999999999999999999998831  1 1  23332222 2332221 111  113568899999


Q ss_pred             eCCCCCC-cceEE
Q psy17207         77 VSSYTPL-EEFKI   88 (123)
Q Consensus        77 ~~s~~pi-~~y~v   88 (123)
                      +.+.+|. ..+.|
T Consensus       159 ~~g~~p~~~~v~W  171 (234)
T 2j6e_L          159 ISDFFPGAVTVAW  171 (234)
T ss_dssp             CCBCSSCCCEEEE
T ss_pred             EEEEcCCceEEEE
Confidence            8875443 34443

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.57  E-value=2e-07  Score=60.25  Aligned_cols=47  Identities=11%  Similarity=0.169  Sum_probs=38.4

Q ss_pred             cCCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|+.+.. .....+|.|.+++.+|+|.|+|.|.|. |.....+.|..
T Consensus        52 ~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V   99 (124)
T 3rbg_A           52 KNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIV   99 (124)
T ss_dssp             CSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEE
Confidence            567887752 344689999999999999999999999 98888766654

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.57  E-value=9.1e-08  Score=63.28  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      .++||.+...+....|+|.+++.+|+|.|+|.|.|..|.
T Consensus        64 ~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~  102 (133)
T 3khq_A           64 EEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSAN  102 (133)
T ss_dssp             TTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC--
T ss_pred             eCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCCC
Confidence            468999887777889999999999999999999999873

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.56  E-value=3.6e-07  Score=63.41  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee------EEEEEEecc-CCCceee-cC--CCCCCCCeEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSGK-PNPAIFR-SH--PQGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~i~l~~~-P~p~~~~-~~--~~~~~~~~~~L   73 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|+|.|.|..|..      ...+.|... +.+|.+. ..  .....+..+.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (219)
T 1c1e_H           65 KGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTL  144 (219)
T ss_dssp             CSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEE
Confidence            478887643  346799999999999999999999987422      123444442 2334332 11  11235788999


Q ss_pred             EEEeCC-CCCCcceE
Q psy17207         74 TWMVSS-YTPLEEFK   87 (123)
Q Consensus        74 ~w~~~s-~~pi~~y~   87 (123)
                      .|.+.+ +++...+.
T Consensus       145 ~C~~~g~~P~p~~v~  159 (219)
T 1c1e_H          145 GCLVKGYFPEPVTVT  159 (219)
T ss_dssp             EEEEEEEBSSCCEEE
T ss_pred             EEEcccccCCCeEEE
Confidence            999987 44332444

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.56  E-value=1.1e-07  Score=71.08  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|..  +|.............+..+.|.|.+.+.++. .|.|
T Consensus       270 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W  341 (388)
T 2v5m_A          270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK-TVSW  341 (388)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCC-EEEE
T ss_pred             CEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCC-eEEE
Confidence            48999999999999999999999999887766654  2211111100111246789999999876654 3443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.55  E-value=4.7e-07  Score=62.96  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEec-cCCCceeec-C--CCCCCCCeEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG-KPNPAIFRS-H--PQGRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~-~P~p~~~~~-~--~~~~~~~~~~L~   74 (123)
                      ++|+.+..+  +....|+|.+++.+|+|.|.|.+.|..|..     ...+.|.. .+.+|.+.. .  .....+..+.|.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  146 (220)
T 1pz5_B           67 KGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLG  146 (220)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEE
Confidence            478888643  345689999999999999999999986432     12444443 233343321 1  112357889999


Q ss_pred             EEeCCC
Q psy17207         75 WMVSSY   80 (123)
Q Consensus        75 w~~~s~   80 (123)
                      |.+.+.
T Consensus       147 C~~~g~  152 (220)
T 1pz5_B          147 CLVKGY  152 (220)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999875

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.53  E-value=1e-07  Score=64.30  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=50.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..+.....+.|..  .+....... ....+..+.|.|.+.+..|...|.|
T Consensus        49 ~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W  120 (176)
T 1f2q_A           49 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS--DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY  120 (176)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEEC--SSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEE
T ss_pred             CceEEEEeccceecCEEEEEEcCCccccccEEEEEeC--cceeecCCcceeeCCCCEEEEEEecCCCCceEEEE
Confidence            3578999999999999999999999888777777662  222221111 1125788999999977666655553

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.53  E-value=1.9e-07  Score=68.08  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC------------CceeEEEEEEec-cC-----------CCcee
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP------------MGKHRAYLELSG-KP-----------NPAIF   59 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~------------~G~~~~~i~l~~-~P-----------~p~~~   59 (123)
                      ++|+.+.  ..+....|.|.+++.+|+|.|+|.+.|.            +|.. ..+.|.. .+           .++.+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~-~~L~V~~~~~~~~~~~~~~~~~~~~v  143 (280)
T 3fku_X           65 QGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQG-TLVTVSSGGGGSGGGGSGGGGIQPGL  143 (280)
T ss_dssp             TTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCC-CEEEECC--------------CCCSB
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCC-EEEEEcCCCCccCCCCCCceEeeeEE
Confidence            3688887  3455678999999999999999999997            2221 1233332 00           12222


Q ss_pred             ecCC--CCCCCCeEEEEEEeCCCCCCcceEEEeEEcCC
Q psy17207         60 RSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        60 ~~~~--~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~   95 (123)
                      ...+  ....+.++.|.|.+.+..+...+..|||....
T Consensus       144 ~~~p~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~  181 (280)
T 3fku_X          144 TQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQG  181 (280)
T ss_dssp             BCCSEEEECTTCCEEEEEECCCCCCCTTCCEEEEECSS
T ss_pred             EeCCcEEEecCCCEEEEEEecCCCCCCceEEEEEECCC
Confidence            1111  11257899999998774332334557876543

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.6e-07  Score=61.56  Aligned_cols=36  Identities=25%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...|+|.++...|+|.|+|+|.|..|..+.++.|..
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V  114 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV  114 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEE
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEE
Confidence            578999999999999999999999999988776654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.53  E-value=5.2e-07  Score=63.36  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-----e--e---EEEEEEec-cCCCce-eecCC--CCCCCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K--H---RAYLELSG-KPNPAI-FRSHP--QGRLPN   69 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~---~~~i~l~~-~P~p~~-~~~~~--~~~~~~   69 (123)
                      ++|+.+..+  .....|+|.+++.+|+|.|.|.+.|..|     .  .   ...+.|.. .+.+|. +...+  ....+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~  144 (225)
T 1op3_H           65 KGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGG  144 (225)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCC
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCC
Confidence            479988753  4567999999999999999999999875     2  1   12344443 223333 22211  112577


Q ss_pred             eEEEEEEeCCCCC
Q psy17207         70 SYNITWMVSSYTP   82 (123)
Q Consensus        70 ~~~L~w~~~s~~p   82 (123)
                      .+.|.|.+.+..|
T Consensus       145 ~v~L~C~~~g~~P  157 (225)
T 1op3_H          145 TAALGCLVKDYFP  157 (225)
T ss_dssp             EEEEEEEEEEEBS
T ss_pred             cEEEEEEEEeEEC
Confidence            8999999876533

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.52  E-value=1e-06  Score=61.58  Aligned_cols=71  Identities=27%  Similarity=0.411  Sum_probs=50.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec---cCCCceeecC-CC---CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG---KPNPAIFRSH-PQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~---~P~p~~~~~~-~~---~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...|.|.+++..|+|.|+|.|.|..|.....+.|..   .|.++.+... +.   ...+..+.|.|.+.+.++. .+.|
T Consensus        71 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v~W  148 (241)
T 3grw_A           71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQW  148 (241)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EEEE
T ss_pred             ceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EEEE
Confidence            458999999999999999999999999888766553   2233333211 11   1246789999999777655 4554

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.52  E-value=1.3e-07  Score=59.72  Aligned_cols=39  Identities=23%  Similarity=0.456  Sum_probs=33.0

Q ss_pred             ccccC-CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         2 ~l~~d-~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|..+ .||.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus        55 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~   94 (104)
T 1pd6_A           55 EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE   94 (104)
T ss_dssp             EECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             ECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECCC
Confidence            34555 7999887777889999999999999999999653

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.52  E-value=1.1e-06  Score=62.95  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCC
Q psy17207          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSY   80 (123)
Q Consensus         6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~   80 (123)
                      +.|+.+. ..+..+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|..... +.+...+.   ...+..+.|.|.+.+.
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~-~~~~~~~~~~~~~~g~~v~l~C~~~~~  127 (291)
T 1qz1_A           49 QQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCDVVSS  127 (291)
T ss_dssp             CSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECC-SEEEECCSSEEEETTSCEEECCEEECS
T ss_pred             CceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeecc-ccccCCCCcccccCCCeEEEEEEeccC
Confidence            4577664 34567899999999999999999999999643 45555554322 22222111   1256789999998776


Q ss_pred             CCCcceE
Q psy17207         81 TPLEEFK   87 (123)
Q Consensus        81 ~pi~~y~   87 (123)
                      ++. .+.
T Consensus       128 p~~-~v~  133 (291)
T 1qz1_A          128 LPP-TII  133 (291)
T ss_dssp             SCC-EEE
T ss_pred             CCC-EEE
Confidence            554 344

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.51  E-value=1.6e-07  Score=63.45  Aligned_cols=79  Identities=20%  Similarity=0.155  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EE--EEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AY--LELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~--i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      +.|+.+...+  ..|.|.+++..|+|.|+|.+.|..|... ..  +.|...|.............+..+.|.|.+.+.++
T Consensus        52 ~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~  129 (192)
T 2iep_A           52 DTRYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPK  129 (192)
T ss_dssp             CTTEEEEGGG--TEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESC
T ss_pred             CccEEEcCCc--cEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCC
Confidence            5677776433  4799999999999999999999998843 33  34444332111100001124678899999877655


Q ss_pred             CcceE
Q psy17207         83 LEEFK   87 (123)
Q Consensus        83 i~~y~   87 (123)
                      . .+.
T Consensus       130 ~-~v~  133 (192)
T 2iep_A          130 P-SVS  133 (192)
T ss_dssp             C-EEE
T ss_pred             c-eEE
Confidence            4 344

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.51  E-value=5.3e-07  Score=65.12  Aligned_cols=78  Identities=18%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCC--CceeecC---CCCCCCCeEEEEEEe
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPN--PAIFRSH---PQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~--p~~~~~~---~~~~~~~~~~L~w~~   77 (123)
                      +.|+.+.. .+..+.|.|.+++.+|+|.|+|.|.|..|.....+.|..  .|.  .+.....   .....+..+.|.|.+
T Consensus        49 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~  128 (305)
T 2nzi_A           49 GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF  128 (305)
T ss_dssp             SSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE
Confidence            35776653 455679999999999999999999999999887766653  221  1111100   011246789999998


Q ss_pred             CCCCCC
Q psy17207         78 SSYTPL   83 (123)
Q Consensus        78 ~s~~pi   83 (123)
                      .+.++.
T Consensus       129 ~g~p~p  134 (305)
T 2nzi_A          129 SGKPDP  134 (305)
T ss_dssp             EEESCC
T ss_pred             CCCCCC
Confidence            776544

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.51  E-value=2.1e-07  Score=62.81  Aligned_cols=51  Identities=22%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCC-CCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...+....|.|.++.. +|+|.|+|.|.|.+|....++.|..
T Consensus       143 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             ECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEE
Confidence            35667888888777778999999995 8999999999999999998877654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.50  E-value=7.9e-07  Score=70.93  Aligned_cols=84  Identities=18%  Similarity=0.294  Sum_probs=56.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeecC-CCCCCCCeEEEEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSH-PQGRLPNSYNITWMV   77 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~~-~~~~~~~~~~L~w~~   77 (123)
                      +|..++|+.+...  .+.|.|.++...|+|.|+|.|.|..|....   .+.|...|..+.+... .....+..+.|.|.+
T Consensus       328 ~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~  405 (642)
T 1e07_A          328 SLPVSPRLQLSND--NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA  405 (642)
T ss_pred             cCCCcCCEEEeCC--CCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEc
Confidence            3555677777532  468999999999999999999999997543   3444445544333211 112257789999999


Q ss_pred             CCCCCCcceEE
Q psy17207         78 SSYTPLEEFKI   88 (123)
Q Consensus        78 ~s~~pi~~y~v   88 (123)
                      .+.++. .|.|
T Consensus       406 ~g~p~~-~i~W  415 (642)
T 1e07_A          406 ASNPPA-QYSW  415 (642)
T ss_pred             CccCCC-eEEE
Confidence            876654 4543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.50  E-value=7e-07  Score=64.78  Aligned_cols=78  Identities=17%  Similarity=0.145  Sum_probs=53.1

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCC-CCCeeEEEEEEcCCceeEEEEEEe--ccC----CCceeecCCCC---CCCCeEEE
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLELS--GKP----NPAIFRSHPQG---RLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~~i~l~--~~P----~p~~~~~~~~~---~~~~~~~L   73 (123)
                      +.|+.+.  ..+....|.|.+++. .|+|.|+|.|.|..|.....+.|.  ..+    .+|.+...+..   ..+..+.|
T Consensus        49 ~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l  128 (304)
T 2yd9_A           49 SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATM  128 (304)
T ss_dssp             CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEE
T ss_pred             CCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEE
Confidence            3566554  344568999999998 999999999999999876655554  322    12343332221   24678999


Q ss_pred             EEEeCCCCCC
Q psy17207         74 TWMVSSYTPL   83 (123)
Q Consensus        74 ~w~~~s~~pi   83 (123)
                      .|.+.+.++.
T Consensus       129 ~C~~~g~p~~  138 (304)
T 2yd9_A          129 LCAASGNPDP  138 (304)
T ss_dssp             CCEEECSSCC
T ss_pred             EEECccCCCC
Confidence            9998776554

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.50  E-value=1.6e-07  Score=57.85  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus        62 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   96 (98)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CEEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence            48999999999999999999999999998877653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.50  E-value=4.4e-07  Score=67.49  Aligned_cols=77  Identities=12%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE--EEEEec-cCCCceee-cC--CCCCCCCeEEEEEEe
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSG-KPNPAIFR-SH--PQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~i~l~~-~P~p~~~~-~~--~~~~~~~~~~L~w~~   77 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|+|.|.|..+....  .+.|.. .+.+|.+. ..  .....+..+.|.|.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  144 (344)
T 1za6_B           65 KGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  144 (344)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence            478888653  45679999999999999999999997654433  344442 23344332 11  112357899999999


Q ss_pred             CCCCC
Q psy17207         78 SSYTP   82 (123)
Q Consensus        78 ~s~~p   82 (123)
                      .++.|
T Consensus       145 ~g~~P  149 (344)
T 1za6_B          145 KDYFP  149 (344)
T ss_dssp             EEEBS
T ss_pred             eeEEC
Confidence            77644

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.50  E-value=4.2e-07  Score=65.45  Aligned_cols=87  Identities=8%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCe-eEEEEEEcCCceeEE---EEEEec-cCCCceeecCC---CCCCCCeEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFG-NYSCEATNPMGKHRA---YLELSG-KPNPAIFRSHP---QGRLPNSYNI   73 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~---~i~l~~-~P~p~~~~~~~---~~~~~~~~~L   73 (123)
                      +|..+.|+.+...   ..|.|.+++.+|+| .|+|.|.|..|....   .+.|.. ...+|.+...+   ....+..+.|
T Consensus       132 ~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l  208 (290)
T 2o26_X          132 SLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTV  208 (290)
T ss_dssp             CCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEE
T ss_pred             CCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEE
Confidence            3455566766543   37999999999999 999999999776443   344432 22445543221   2235788999


Q ss_pred             EEEeCCCCCCcceEEEeEE
Q psy17207         74 TWMVSSYTPLEEFKIKYRK   92 (123)
Q Consensus        74 ~w~~~s~~pi~~y~v~yr~   92 (123)
                      .|.+.+.++...+.| |+.
T Consensus       209 ~C~~~g~p~p~~i~W-~~~  226 (290)
T 2o26_X          209 VCTIKDVSTSVNSMW-LKM  226 (290)
T ss_dssp             EEEEEESSTTCEEEE-EEE
T ss_pred             EEEEecCCcceeEEE-ecC
Confidence            999987655444554 443

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.50  E-value=1.6e-07  Score=57.81  Aligned_cols=36  Identities=33%  Similarity=0.534  Sum_probs=32.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++..|+|.|+|.|.|..|....++.|..
T Consensus        64 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            358999999999999999999999999998877753

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.50  E-value=7.8e-07  Score=63.31  Aligned_cols=88  Identities=13%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEecc------------CCCceeecCC---CC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGK------------PNPAIFRSHP---QG   65 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~------------P~p~~~~~~~---~~   65 (123)
                      ++|+.+..+  +...+|.|.+++.+|+|.|+|.|.|..+...   ..+.|...            +.++.+...+   ..
T Consensus        66 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v  145 (253)
T 3uzq_A           66 QGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAV  145 (253)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEE
T ss_pred             CCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEE
Confidence            478887643  3467899999999999999999999766543   23444321            1122222111   12


Q ss_pred             CCCCeEEEEEEeCCCCCCc--ceEEEeEEc
Q psy17207         66 RLPNSYNITWMVSSYTPLE--EFKIKYRKI   93 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~--~y~v~yr~~   93 (123)
                      ..+..+.|.|.+.+.++..  ....|||..
T Consensus       146 ~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~  175 (253)
T 3uzq_A          146 SLGQRATISCRASENVDRYGNSFMHWYQQK  175 (253)
T ss_dssp             CTTSCEEEEEEESSCCEETTEECEEEEEEC
T ss_pred             eCCCCEEEEEEecCccccCCCcEEEEEEEC
Confidence            2578999999997754431  134467764

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=3.6e-07  Score=59.16  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=39.1

Q ss_pred             ccccCC----------CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccC
Q psy17207          2 RLETTE----------RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKP   54 (123)
Q Consensus         2 ~l~~d~----------R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P   54 (123)
                      +|..++          ||.+...+..+.|+|++++.+|+|.|+|...+.. ...+.+.|...|
T Consensus        46 ~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~~-~ssA~L~V~~~p  107 (112)
T 2e6q_A           46 ELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV-QDSAALTIQESS  107 (112)
T ss_dssp             BCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETTE-EEEEEEEEECSS
T ss_pred             ECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECCe-eEEEEEEEeCCC
Confidence            566676          9999888888999999999999999987544432 334556665554

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=1.8e-07  Score=58.05  Aligned_cols=39  Identities=26%  Similarity=0.539  Sum_probs=33.7

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|.|.|.
T Consensus        50 ~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~   88 (102)
T 2eo1_A           50 KLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ   88 (102)
T ss_dssp             ECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE
T ss_pred             ECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC
Confidence            356678999888777889999999999999999999764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.49  E-value=4.3e-07  Score=65.89  Aligned_cols=66  Identities=26%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi   83 (123)
                      +.|.|.+++..|+|.|+|.|.|..|...   ..+.|...+.+|.+...+.   ...+..+.|.|.+.+.++.
T Consensus       164 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p  235 (304)
T 2yd9_A          164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMP  235 (304)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCC
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCC
Confidence            4899999999999999999999999887   4566654444444443221   2357889999999876554

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.49  E-value=1.3e-07  Score=65.92  Aligned_cols=69  Identities=13%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC-CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ-GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~-~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      +.|.|.+++.+|+|.|+|.|.|........+.|...|  ........ ...+..+.|.|.+.+.+|...|.|
T Consensus        54 ~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p--~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W  123 (204)
T 3sgj_C           54 SSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGW--LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTY  123 (204)
T ss_dssp             SEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSS--EEEECSCSEEETTCCEEEEEEEGGGCCCEEEEE
T ss_pred             cEEEEecccccCCEEEEEEeCCCcccccEEEEEecCc--eEecCCceeEeCCCcEEEEEEecCCCCCceEEE
Confidence            6899999999999999999999776666666666433  22221111 125788999999987767655654

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.48  E-value=6.4e-07  Score=62.38  Aligned_cols=77  Identities=17%  Similarity=0.226  Sum_probs=50.7

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-----e--eEEEEEEecc-CCCceee-cCC--CCCCCCeEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K--HRAYLELSGK-PNPAIFR-SHP--QGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~~~~i~l~~~-P~p~~~~-~~~--~~~~~~~~~   72 (123)
                      ++|+.+..+  .....|+|++++.+|+|.|.|.+.|..|     .  ....+.|... +.+|.+. ..+  ....+..+.
T Consensus        67 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~  146 (222)
T 1q9r_B           67 KGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVT  146 (222)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEE
T ss_pred             CCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEE
Confidence            478888653  3467999999999999999999999765     1  1224445432 2333332 211  112578899


Q ss_pred             EEEEeCCCCC
Q psy17207         73 ITWMVSSYTP   82 (123)
Q Consensus        73 L~w~~~s~~p   82 (123)
                      |.|.+.+..|
T Consensus       147 L~C~~~g~~P  156 (222)
T 1q9r_B          147 LGCLVKGYFP  156 (222)
T ss_dssp             EEEEEEEEBS
T ss_pred             EEEEEccEEC
Confidence            9999976533

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.48  E-value=1e-07  Score=68.86  Aligned_cols=48  Identities=23%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      |..++|+.+.  +..+.|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus       263 ~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          263 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             CCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            3445666665  34679999999999999999999999999999988764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.48  E-value=6.5e-07  Score=64.08  Aligned_cols=83  Identities=14%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEecc---CCCceeecCCCC---CCCCeEEEEE
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELSGK---PNPAIFRSHPQG---RLPNSYNITW   75 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~~~---P~p~~~~~~~~~---~~~~~~~L~w   75 (123)
                      +..+.|+.+...   +.|.|.+++.+|+|.|+|.|. |..|.....+.|...   +.+|.+...+..   ..+..+.|.|
T Consensus       132 ~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C  208 (289)
T 3ejj_X          132 VLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVC  208 (289)
T ss_dssp             CCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEE
T ss_pred             cCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEE
Confidence            345567777543   379999999999999999999 555555555554432   245544432221   2578899999


Q ss_pred             EeCCCCCCcceEE
Q psy17207         76 MVSSYTPLEEFKI   88 (123)
Q Consensus        76 ~~~s~~pi~~y~v   88 (123)
                      .+.+..|...+.|
T Consensus       209 ~~~~~~p~~~i~W  221 (289)
T 3ejj_X          209 SATNAEVGFNVIL  221 (289)
T ss_dssp             EEEESSSCCEEEE
T ss_pred             EeCCCCCceEEEE
Confidence            9977444444553

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.47  E-value=1e-06  Score=60.87  Aligned_cols=73  Identities=22%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCC-CceeecC-CC---CCCCCeEEEEEEeCCCCCCcceEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPN-PAIFRSH-PQ---GRLPNSYNITWMVSSYTPLEEFKIK   89 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~-p~~~~~~-~~---~~~~~~~~L~w~~~s~~pi~~y~v~   89 (123)
                      ...|.|.+++..|+|.|+|.|.|..|.....+.|..  .+. ++.+... +.   ...+..+.|.|.+.+.++. .+. |
T Consensus        75 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v~-W  152 (231)
T 3ojm_B           75 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQ-W  152 (231)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EEE-E
T ss_pred             cceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EEE-E
Confidence            357999999999999999999999999887666553  222 2332211 11   1146788999998776554 444 4


Q ss_pred             eE
Q psy17207         90 YR   91 (123)
Q Consensus        90 yr   91 (123)
                      |+
T Consensus       153 ~~  154 (231)
T 3ojm_B          153 IK  154 (231)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.47  E-value=4.7e-07  Score=62.16  Aligned_cols=73  Identities=15%  Similarity=0.112  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE--eccCCCceeecCCCCCCCCeEEEEEEeCCCCCCc
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLE   84 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l--~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~   84 (123)
                      +|+.+.  ...++|+|++++.+|+|.|+|.+.+.. .....+.|  ..++..|.+..     ....+.|.|.+... |..
T Consensus        60 ~R~~l~--~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~g-p~p  130 (180)
T 2dru_A           60 DRVDLD--KTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIYW-----ECSNATLTCEVLEG-TDV  130 (180)
T ss_dssp             TTEEEC--TTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEEE-----EGGGTEEEEECSSC-TTC
T ss_pred             CeEEEe--CCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEe-----cCCCEEEEEEeCCC-CCC
Confidence            677772  234689999999999999999998876 44554444  44444444332     13458999998544 444


Q ss_pred             ceEE
Q psy17207         85 EFKI   88 (123)
Q Consensus        85 ~y~v   88 (123)
                      .|.|
T Consensus       131 ~i~W  134 (180)
T 2dru_A          131 ELKL  134 (180)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4553

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.46  E-value=6.8e-08  Score=67.67  Aligned_cols=83  Identities=13%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeecCCC---CCCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s   79 (123)
                      ++|+.+...+....|.|.+++.+|+|.|+|.|.|..|....   .+.|...+.+|.+.....   ...+..+.|.|.+.+
T Consensus        81 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g  160 (233)
T 3bqu_C           81 PSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNN  160 (233)
T ss_dssp             CTTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             CccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEcc
Confidence            45776654445568999999999999999999998764321   344444333444332111   113678999999877


Q ss_pred             CCCC-cceEE
Q psy17207         80 YTPL-EEFKI   88 (123)
Q Consensus        80 ~~pi-~~y~v   88 (123)
                      .+|. ..+.|
T Consensus       161 ~~p~~~~v~W  170 (233)
T 3bqu_C          161 FYPKDINVKW  170 (233)
T ss_dssp             EBSSCEEEEE
T ss_pred             ccCCceEEEE
Confidence            5443 23443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.46  E-value=2.2e-07  Score=57.68  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=35.9

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +|..++|+.+...+....|.|.+++.+|+|.|+|+    +|.....+.|
T Consensus        47 ~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l   91 (103)
T 2e7b_A           47 VLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATL   91 (103)
T ss_dssp             BCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCE
T ss_pred             ECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEE
Confidence            45677899998888888999999999999999998    4444444333

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.46  E-value=9.8e-07  Score=61.93  Aligned_cols=77  Identities=10%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc----e----eEEEEEEec-cCCCceee-cC--CCCCCCCeE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG----K----HRAYLELSG-KPNPAIFR-SH--PQGRLPNSY   71 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G----~----~~~~i~l~~-~P~p~~~~-~~--~~~~~~~~~   71 (123)
                      ++|+.+..+  .....|+|.+++.+|+|.|.|.+.|..|    .    ....+.|.. .+.+|.+. ..  .....+..+
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v  144 (223)
T 1dee_B           65 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTV  144 (223)
T ss_dssp             BTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEE
T ss_pred             CCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcE
Confidence            479988753  3467899999999999999999999753    1    112344443 23333322 11  111356889


Q ss_pred             EEEEEeCCCCC
Q psy17207         72 NITWMVSSYTP   82 (123)
Q Consensus        72 ~L~w~~~s~~p   82 (123)
                      .|.|.+.+..|
T Consensus       145 ~L~C~~~g~~P  155 (223)
T 1dee_B          145 AVGCLAQDFLP  155 (223)
T ss_dssp             EEEEEEEEEBS
T ss_pred             EEEEEEEEEeC
Confidence            99999876533

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.46  E-value=2.2e-07  Score=69.37  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ..++|.|.+++..|+|.|+|.|.|..|...   ..+.+...+.|...........+..+.|.|.+....|...+.|
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W  135 (395)
T 1bih_A           60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW  135 (395)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEE
T ss_pred             CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEE
Confidence            356899999999999999999999999876   3444444343433222222235788999998633333334554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.46  E-value=2.5e-07  Score=67.55  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=34.2

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCce
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI   58 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~   58 (123)
                      ..|.|.+++..|+|.|+|.|.|.+|.+..++.|...-.||+
T Consensus       268 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred             CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            47999999999999999999999999999887776434443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.45  E-value=2.8e-07  Score=71.22  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi   83 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|.....+.|...+.|......+ .......+.|.|.+.+.|+.
T Consensus       102 ~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P  169 (423)
T 3qs7_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEP  169 (423)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCC
T ss_pred             EEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCC
Confidence            34799999999999999999999999998887776543221110000 01124456789999877554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.45  E-value=4.3e-07  Score=64.17  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeec-CCCCCCCCeEEEEEEeCC-CCCCcceEEEeEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS-HPQGRLPNSYNITWMVSS-YTPLEEFKIKYRK   92 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~-~~~~~~~~~~~L~w~~~s-~~pi~~y~v~yr~   92 (123)
                      ...|.|.+++.+|+|.|+|.+.|..|.....+.|.....|..... ......+..+.|.|.+.+ +++...+. ||+.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~-W~k~  157 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINIT-WEKQ  157 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEEE-EEEE
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEEE-EEEC
Confidence            345999999999999999999999998887766654322221111 111223566779999877 44332445 3443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.45  E-value=5.3e-07  Score=67.20  Aligned_cols=55  Identities=16%  Similarity=0.018  Sum_probs=44.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcC--CceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNP--MGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      ...|.|.++..+|+|.|+|.|.|.  .|.....+.|....    +       .+..+.|.|.+.+.++
T Consensus       254 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~----v-------~g~~~~l~C~~~g~p~  310 (363)
T 1wio_A          254 PLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR----A-------TQLQKNLTCEVWGPTS  310 (363)
T ss_dssp             SCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE----E-------CCCSSSEEEEEESSCC
T ss_pred             ceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE----e-------cCCCeeEEEEEccccC
Confidence            458999999999999999999999  99988887776531    1       1455779999877643

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.45  E-value=2.7e-07  Score=66.05  Aligned_cols=76  Identities=9%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecCC-CCCCCCeEEEEEEeCCCCCCcceEEE
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKIK   89 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi~~y~v~   89 (123)
                      ......|.|.+++..|+|.|+|.|.|..|.....+.|..  .|.+....... ....+..+.|.|.+.+.++...+.|.
T Consensus        47 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~  125 (289)
T 3ejj_X           47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLM  125 (289)
T ss_dssp             CSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEE
T ss_pred             cCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEE
Confidence            345678999999999999999999999998777766654  33331111110 11247789999999876554446653

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.45  E-value=1.4e-06  Score=61.44  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCceeE----EEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCCCcceEEEeEE
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEFKIKYRK   92 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~pi~~y~v~yr~   92 (123)
                      .|.|.+++.+|+|.|+|.|.|..|...    ..+.|.+.+.+|.+...+  ....++.+.|.|.....++ ..|. |||.
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~~-W~k~  142 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPF-DRFS-LAKE  142 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCC-SEEE-EEET
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCC-CEEE-EEEC
Confidence            899999999999999999999877433    234455544445443222  1125788999996543333 3444 4443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.45  E-value=7.2e-07  Score=63.93  Aligned_cols=77  Identities=17%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEE--Eecc-CCCceeecCCC---CCCCCeEEEEE
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLE--LSGK-PNPAIFRSHPQ---GRLPNSYNITW   75 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~--l~~~-P~p~~~~~~~~---~~~~~~~~L~w   75 (123)
                      +..+.|+.+...   ..|.|.+++..|+|.|+|.|.|..|.... .+.  |... +.+|.+...+.   ...+..+.|.|
T Consensus       132 ~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C  208 (292)
T 4dkd_C          132 LMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVC  208 (292)
T ss_dssp             CCSSCCEECCSS---SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEE
T ss_pred             cccCCcccccCC---ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEE
Confidence            344456665433   24999999999999999999999886643 444  4432 23444433221   13578999999


Q ss_pred             EeCCCCC
Q psy17207         76 MVSSYTP   82 (123)
Q Consensus        76 ~~~s~~p   82 (123)
                      .+.+.+|
T Consensus       209 ~~~~~~~  215 (292)
T 4dkd_C          209 SASSVDV  215 (292)
T ss_dssp             EEEESSS
T ss_pred             EecCCCC
Confidence            9986554

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.45  E-value=2.3e-07  Score=72.39  Aligned_cols=64  Identities=6%  Similarity=0.016  Sum_probs=46.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..|....++.|...- +|.+........+   .|.|.+.+.++.
T Consensus       373 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~-~P~i~~~~~~~~g---~l~C~~~g~P~p  436 (524)
T 2ec8_A          373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT-KPEILTYDRLVNG---MLQCVAAGFPEP  436 (524)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE-EEEEEEEECCSSS---CEEEEEEEESCC
T ss_pred             eEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec-CCeEeecccCcCc---EEEEEEEeecCC
Confidence            357899999999999999999999999998887776421 2233221111122   899999877655

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.45  E-value=3.5e-07  Score=57.92  Aligned_cols=51  Identities=22%  Similarity=0.212  Sum_probs=40.4

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p   56 (123)
                      ++|+.+..  ......|+|.+++.+|+|.|.|.+.+..+.....+.|.+.|.|
T Consensus        60 ~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           60 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             CCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            47888763  3456789999999999999999999986666777888776654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.44  E-value=6.6e-07  Score=73.26  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             cccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCC---CCCCeEEEEEEeC
Q psy17207          3 LETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQG---RLPNSYNITWMVS   78 (123)
Q Consensus         3 l~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~---~~~~~~~L~w~~~   78 (123)
                      |..+.++.+. ..+..+.|.|.++...|+|.|+|.|.|..|....++.|... .||.+...+..   ..+..+.|.|.+.
T Consensus       661 l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~-~~P~~~~~~~~~~v~~G~~v~l~C~~~  739 (816)
T 3dmk_A          661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-VPPRWILEPTDKAFAQGSDAKVECKAD  739 (816)
T ss_dssp             CCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE-EEEEEEECCCCEEEETTCCEEEECEEE
T ss_pred             cCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE-eCCceeeecccceecCCCcEEEEEEEe
Confidence            3344455443 23456889999999999999999999999999887766542 12223222211   2477899999998


Q ss_pred             CCCCCcceEEEeEE
Q psy17207         79 SYTPLEEFKIKYRK   92 (123)
Q Consensus        79 s~~pi~~y~v~yr~   92 (123)
                      +.++. .+. |++.
T Consensus       740 g~P~p-~i~-W~k~  751 (816)
T 3dmk_A          740 GFPKP-QVT-WKKA  751 (816)
T ss_dssp             EESCC-EEE-CCEE
T ss_pred             cCCCC-eEE-EEec
Confidence            77655 344 3443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.44  E-value=3.6e-06  Score=57.89  Aligned_cols=74  Identities=12%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc-------eeEEEEEEeccCCCceeecCCC--CCCCCeEEEEEEeCCCCCCcce
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEF   86 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~~~i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~~pi~~y   86 (123)
                      ....|.|.+++.+|+|.|+|.|.|..+       +....+.|.+.+.+|.+...+.  ...++.+.|.|.+.+.+  ..|
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~--~~~  138 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSY--DMY  138 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCC--SEE
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCC--ceE
Confidence            357899999999999999999987532       2234566666544554432221  23578999999987633  234


Q ss_pred             EEEeEE
Q psy17207         87 KIKYRK   92 (123)
Q Consensus        87 ~v~yr~   92 (123)
                      . |||.
T Consensus       139 ~-w~k~  143 (201)
T 1nkr_A          139 H-LSRE  143 (201)
T ss_dssp             E-EEET
T ss_pred             E-EEEC
Confidence            4 4553

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.44  E-value=1.4e-06  Score=63.66  Aligned_cols=83  Identities=8%  Similarity=0.042  Sum_probs=55.1

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-----EEEEeccCCCceeecCCCCCCCCeEEEEEEeCCC-C
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-----YLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-T   81 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-----~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~-~   81 (123)
                      |+.+.. +..+.|+|.++...| |.|+|.|.|. |....     .+.+..+|.+|...... .....++.|+|.++.. .
T Consensus        56 ~~~~~~-~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~~P~~l~~~-~~~~~~v~l~W~~~~~~~  131 (303)
T 1i1r_A           56 QYTIIN-RTASSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETH  131 (303)
T ss_dssp             GCEEEE-TTEEEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCCCCCEEEEEE-EETTSCCEEEEECCSCCS
T ss_pred             heeeeC-CcEEEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCCCCCeeeEEE-ECCCCcEEEEccCCCCCC
Confidence            555543 446789999999886 9999999884 43322     23344577777633211 1234789999997532 2


Q ss_pred             CCcceEEEeEEcC
Q psy17207         82 PLEEFKIKYRKIP   94 (123)
Q Consensus        82 pi~~y~v~yr~~~   94 (123)
                      .+..|.|+|+...
T Consensus       132 ~~~~Y~v~~~~~~  144 (303)
T 1i1r_A          132 LETNFTLKSEWAT  144 (303)
T ss_dssp             SCCEEEEEEEETT
T ss_pred             CCcCEEEEEEecC
Confidence            3578999998753

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.44  E-value=1.4e-06  Score=61.03  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=51.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEeccC-CCceee-cCC-CCCCCCeEEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSGKP-NPAIFR-SHP-QGRLPNSYNITW   75 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~~P-~p~~~~-~~~-~~~~~~~~~L~w   75 (123)
                      .+|+.+..+  +....|+|.+++.+|+|.|.|.+.|..+..     ...+.|...+ .+|.+. ... ....+..+.|.|
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C  144 (220)
T 2fbj_H           65 KDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGC  144 (220)
T ss_dssp             TTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred             CCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEE
Confidence            479988753  456789999999999999999999986532     1234444322 233332 111 112567899999


Q ss_pred             EeCCCCC
Q psy17207         76 MVSSYTP   82 (123)
Q Consensus        76 ~~~s~~p   82 (123)
                      .+.+..|
T Consensus       145 ~~~g~~P  151 (220)
T 2fbj_H          145 LIHDYFP  151 (220)
T ss_dssp             EEEEEBS
T ss_pred             EEEeEEC
Confidence            9876544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.44  E-value=2e-06  Score=60.49  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecCCC--CCCCCeEEEEEEeCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~~p   82 (123)
                      .+.|.|.+++..|.|.|+|.|.|..|.....+.|.  ..+.+|.+.....  ...+..+.|.|.+.+.++
T Consensus       130 ~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~  199 (262)
T 3rjd_A          130 NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ  199 (262)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC
T ss_pred             CCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCC
Confidence            45799999999999999999999998888765554  3334454443221  125788999999988763

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.44  E-value=6.5e-07  Score=69.80  Aligned_cols=72  Identities=18%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc--CCCceeecC---CCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--PNPAIFRSH---PQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~--P~p~~~~~~---~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+.|.|.++..+|+|.|+|.|.|..|.....+.|...  |........   .....+..+.|.|.+.+.++...+.|
T Consensus       272 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W  348 (524)
T 2ec8_A          272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQW  348 (524)
T ss_dssp             EEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEE
Confidence            5789999999999999999999999999887766543  222111111   11125778999999987766543553

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.43  E-value=2.5e-07  Score=63.25  Aligned_cols=68  Identities=19%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE-EeccCCCc--eeecCCCCCCCCeEEEEEEeCCCCCC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE-LSGKPNPA--IFRSHPQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~-l~~~P~p~--~~~~~~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      ..++|.|.+++.+|+|.|+|.|.|..|....... +...+.|.  ...............+.+......|.
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~  151 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPP  151 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSC
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCC
Confidence            3467999999999999999999998887665432 22222222  11222222245566667765444333

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.43  E-value=1.5e-07  Score=67.53  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=51.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecC-CCCCCCCeEEEEEEeCCCCCC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSH-PQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~-~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      .++.+...+..+.|.|.+++..|+|.|+|.|.|..|.....+.|..  .|.+...... .....+..+.|.|.+.+..+.
T Consensus        40 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~  119 (292)
T 4dkd_C           40 PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLE  119 (292)
T ss_dssp             SSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGG
T ss_pred             CceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcc
Confidence            4555555566789999999999999999999999988877766654  3322111111 111256789999998763221


Q ss_pred             cceEEE
Q psy17207         84 EEFKIK   89 (123)
Q Consensus        84 ~~y~v~   89 (123)
                      ..+.|.
T Consensus       120 ~~v~W~  125 (292)
T 4dkd_C          120 AGVSLV  125 (292)
T ss_dssp             SSEEEE
T ss_pred             eeEEEE
Confidence            345543

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.43  E-value=8e-07  Score=58.15  Aligned_cols=48  Identities=25%  Similarity=0.279  Sum_probs=39.4

Q ss_pred             CCCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         6 d~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .+|+.+...   ....+|.|.+++.+|+|.|+|.+.|..|.....+.|.+.
T Consensus        70 ~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             TTSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            468877642   236789999999999999999999999988887777654

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.43  E-value=3e-07  Score=59.24  Aligned_cols=45  Identities=18%  Similarity=0.264  Sum_probs=36.7

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~~   52 (123)
                      .++|..+..+|   +|.|++++.+|+|.|+|.+.|..| ..++++.|..
T Consensus        62 ~~gR~~~~~ng---SL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V  107 (111)
T 2qsq_A           62 YSGREIIYPNA---SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV  107 (111)
T ss_dssp             CCSCEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEE
T ss_pred             cCCcEEEecCC---cEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEE
Confidence            35788887544   999999999999999999999977 4666666654

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.42  E-value=1.9e-06  Score=59.99  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=49.8

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC-----ceeEEEEEEec-cCCCceee--cCCCCCCCCeEEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM-----GKHRAYLELSG-KPNPAIFR--SHPQGRLPNSYNITW   75 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~-----G~~~~~i~l~~-~P~p~~~~--~~~~~~~~~~~~L~w   75 (123)
                      .+|+.+..+  .....|.|.+++.+|+|.|.|.+.|..     |.. ..+.|.. .+.+|.+.  .......+..+.|.|
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C  145 (221)
T 3m8o_H           67 RGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQG-TLVTVSSASPTSPKVFPLSLCSTQPDGNVVIAC  145 (221)
T ss_dssp             TTSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCC-EEEEECSCCCBCCEEEEEECCSCCCTTEEEEEE
T ss_pred             cccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCC-EEEEEecCCCCCCeEEEecCcccccCCCEEEEE
Confidence            479988643  456789999999999999999999863     221 2344442 23333332  111114578899999


Q ss_pred             EeCCCCC
Q psy17207         76 MVSSYTP   82 (123)
Q Consensus        76 ~~~s~~p   82 (123)
                      .+.+..|
T Consensus       146 ~~~~~~P  152 (221)
T 3m8o_H          146 LVQGFFP  152 (221)
T ss_dssp             EEEEEBS
T ss_pred             EEEeeEC
Confidence            9987434

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.42  E-value=1.2e-06  Score=66.46  Aligned_cols=83  Identities=16%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-----e--eEEEEEEec-cCCCcee-ecCC--CCCCCCeEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----K--HRAYLELSG-KPNPAIF-RSHP--QGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~~~~i~l~~-~P~p~~~-~~~~--~~~~~~~~~   72 (123)
                      .+|+.+...  +....|.|.+++.+|+|.|+|.|.|..|     .  ....+.|.. .+.+|.+ ...+  ....+..+.
T Consensus       283 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~  362 (438)
T 1qgc_4          283 KGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVT  362 (438)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEE
T ss_pred             CCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEE
Confidence            478887653  4467899999999999999999999544     1  123444443 2233332 2211  112578999


Q ss_pred             EEEEeCCCCCC-cceEE
Q psy17207         73 ITWMVSSYTPL-EEFKI   88 (123)
Q Consensus        73 L~w~~~s~~pi-~~y~v   88 (123)
                      |.|.+.+..|. ..+.|
T Consensus       363 L~C~~~g~~P~~~~v~W  379 (438)
T 1qgc_4          363 LGCLVKGYFPEPVTVTW  379 (438)
T ss_dssp             EEEEEESCBSSCCEEEE
T ss_pred             EEEEeccccCCCcEEEE
Confidence            99999876343 24443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.42  E-value=3.6e-07  Score=65.48  Aligned_cols=48  Identities=33%  Similarity=0.515  Sum_probs=40.4

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      |..++|+.+..  ....|.|.++..+|+|.|+|.|.|.+|.+.+++.|..
T Consensus       235 ~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  282 (291)
T 2wim_A          235 IEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  282 (291)
T ss_dssp             CCCTTTEEECS--TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CcCCccEEEcC--CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEE
Confidence            45566776642  3468999999999999999999999999999988875

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.42  E-value=8.8e-07  Score=61.76  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce-----eEEEEEEec-cCCCce-eecCC--CCCCCCeEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK-----HRAYLELSG-KPNPAI-FRSHP--QGRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-----~~~~i~l~~-~P~p~~-~~~~~--~~~~~~~~~L~   74 (123)
                      .+|+.+..+  +....|+|.+++.+|+|.|.|.+.|..|.     ....+.|.. .|.+|. +...+  ....+..+.|.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  143 (215)
T 1c5d_H           64 KSRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLG  143 (215)
T ss_dssp             GGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEE
T ss_pred             cCcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEE
Confidence            468887643  34679999999999999999999997421     113445543 233333 22211  11246789999


Q ss_pred             EEeCCC
Q psy17207         75 WMVSSY   80 (123)
Q Consensus        75 w~~~s~   80 (123)
                      |.+.+.
T Consensus       144 C~~~g~  149 (215)
T 1c5d_H          144 CLVKGY  149 (215)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            998765

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.42  E-value=9e-07  Score=64.21  Aligned_cols=81  Identities=14%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcC-CceeEEEEEEec--cCCCceeecC--CCCCCCCeEEEEEEeCCC
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNP-MGKHRAYLELSG--KPNPAIFRSH--PQGRLPNSYNITWMVSSY   80 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~~i~l~~--~P~p~~~~~~--~~~~~~~~~~L~w~~~s~   80 (123)
                      +|+.+.. ....++|.|.+++.+|+|.|+|.|.|. .|.....+.+..  .|.++.+...  ........+.|.|.+.++
T Consensus        62 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g  141 (308)
T 4fom_A           62 GRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATG  141 (308)
T ss_dssp             TTEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEE
T ss_pred             ceEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCC
Confidence            4555432 123467999999999999999999986 666666655543  3333322221  112246788899986544


Q ss_pred             CCCcceE
Q psy17207         81 TPLEEFK   87 (123)
Q Consensus        81 ~pi~~y~   87 (123)
                      .|...+.
T Consensus       142 ~P~~~i~  148 (308)
T 4fom_A          142 KPVAHID  148 (308)
T ss_dssp             BSCCEEE
T ss_pred             cCCceEE
Confidence            4444444

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.41  E-value=3.3e-07  Score=67.13  Aligned_cols=74  Identities=26%  Similarity=0.411  Sum_probs=51.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--c-CCCceeecC-CC---CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--K-PNPAIFRSH-PQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~-P~p~~~~~~-~~---~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ....|.|.+++..|+|.|+|.|.|..|.....+.|..  . |.+|.+... +.   ...+..+.|.|.+.+.++. .+. 
T Consensus       178 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p-~v~-  255 (334)
T 1ry7_B          178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HIQ-  255 (334)
T ss_dssp             TTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE-EEE-
T ss_pred             ceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC-eEE-
Confidence            4568999999999999999999999999888766654  2 223333221 11   1246788999998776554 444 


Q ss_pred             EeE
Q psy17207         89 KYR   91 (123)
Q Consensus        89 ~yr   91 (123)
                      ||+
T Consensus       256 W~~  258 (334)
T 1ry7_B          256 WLK  258 (334)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.41  E-value=2.7e-06  Score=61.75  Aligned_cols=66  Identities=21%  Similarity=0.333  Sum_probs=47.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEE-cCCceeE---EEEEEecc----CCCceeecCCC----CCCCCeEEEEEEeCCCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEAT-NPMGKHR---AYLELSGK----PNPAIFRSHPQ----GRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~-N~~G~~~---~~i~l~~~----P~p~~~~~~~~----~~~~~~~~L~w~~~s~~pi   83 (123)
                      +.|.|.+++..|+|.|+|.|. |..|...   ..+.|...    +.+|.+...+.    ...+..+.|.|.+.+.++.
T Consensus       162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p  239 (315)
T 1itb_B          162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD  239 (315)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS
T ss_pred             ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC
Confidence            489999999999999999999 8999883   34444322    45555543322    1257889999999876554

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.41  E-value=5.8e-07  Score=63.90  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEeccCCCceeecCCCCCCCCeEEEEEEeC--CC
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVS--SY   80 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~   80 (123)
                      +|+.+..  ......|.|.+++.+|+|.|+|.|.|..+..  ...+.|...|.+|....   ...+..+.|.|.+.  ..
T Consensus        71 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~---v~~G~~v~L~C~~~~~~~  147 (268)
T 3mj6_A           71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR---VRVGDTTQMRCSIQSTEE  147 (268)
T ss_dssp             TTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEE---EETTCCEEECCBCEESSS
T ss_pred             CceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccc---cccCCcEEEEEEecCCCC
Confidence            5555531  1234689999999999999999999976654  34566665555443221   12467889999982  23


Q ss_pred             CCCcceEEEeE
Q psy17207         81 TPLEEFKIKYR   91 (123)
Q Consensus        81 ~pi~~y~v~yr   91 (123)
                      .|...+. ||+
T Consensus       148 ~p~~~v~-W~~  157 (268)
T 3mj6_A          148 KRVTKVN-WMF  157 (268)
T ss_dssp             SCCCEEE-EEE
T ss_pred             CCccceE-EEe
Confidence            3433454 344

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.40  E-value=9.6e-07  Score=62.08  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc------e--e---EEEEEEec-cCCCceee-cCC--CCCCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG------K--H---RAYLELSG-KPNPAIFR-SHP--QGRLP   68 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G------~--~---~~~i~l~~-~P~p~~~~-~~~--~~~~~   68 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|.|.+.|..|      .  .   ...+.|.. .+.+|.+. ..+  ....+
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g  145 (228)
T 3bae_H           66 ESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTG  145 (228)
T ss_dssp             GGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CC
T ss_pred             CCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCC
Confidence            468887643  3467999999999999999999999765      1  1   12344443 23333322 211  11256


Q ss_pred             CeEEEEEEeCCC
Q psy17207         69 NSYNITWMVSSY   80 (123)
Q Consensus        69 ~~~~L~w~~~s~   80 (123)
                      ..+.|.|.+.+.
T Consensus       146 ~~~~l~C~~~g~  157 (228)
T 3bae_H          146 SSVTLGCLVKGY  157 (228)
T ss_dssp             SEEEEEEEEEEE
T ss_pred             CCEEEEEEEccE
Confidence            789999998765

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.40  E-value=2.8e-07  Score=68.78  Aligned_cols=70  Identities=20%  Similarity=0.350  Sum_probs=47.9

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEeccCCCceeecCCC----CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~~~P~p~~~~~~~~----~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...|.|.+++..|+|.|+|.|.|..|.... ++.|.... +|.+...+.    ...+..+.|.|.+.+.++.. +.|
T Consensus       269 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~-~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-v~W  343 (395)
T 1bih_A          269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN-VVW  343 (395)
T ss_dssp             TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE-EEEEEECCCSEEEECTTSCEEEECEEEEESCCC-CEE
T ss_pred             CceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc-CCccccCCCcceEecCCCeEEEEEEECcccCCe-eEE
Confidence            348999999999999999999999999765 55444321 122222111    12567899999998765543 443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.40  E-value=6.5e-07  Score=61.92  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .|+.+...+..+.|.|.+++.+|+|.|+|.|.|.+|...+
T Consensus       156 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          156 GRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             ceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            5777766666789999999999999999999999999875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.40  E-value=4.7e-07  Score=60.82  Aligned_cols=48  Identities=33%  Similarity=0.515  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      |..++++.+..  ..+.|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       139 ~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  186 (189)
T 2v5t_A          139 IEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  186 (189)
T ss_dssp             CCCSSSEEEET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcCCCcEEEec--CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence            45556776653  3468999999999999999999999999998877653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.40  E-value=3.6e-06  Score=61.17  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc-------eeEEEEEEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCCCcce
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG-------KHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPLEEF   86 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~pi~~y   86 (123)
                      ....|.|.+++.+|+|.|+|.|.|..+       ++...+.|.+.+.+|.+...+  ....++.+.|.|.+.+.++  .|
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~--~~  137 (257)
T 1b6u_A           60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYD--MY  137 (257)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCS--EE
T ss_pred             ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCc--EE
Confidence            356899999999999999999987532       223456666655555554322  1236789999999876543  45


Q ss_pred             EEEeEE
Q psy17207         87 KIKYRK   92 (123)
Q Consensus        87 ~v~yr~   92 (123)
                      . |||.
T Consensus       138 ~-w~k~  142 (257)
T 1b6u_A          138 H-LSRE  142 (257)
T ss_dssp             E-EEET
T ss_pred             E-EEEC
Confidence            5 4543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.39  E-value=5.6e-07  Score=67.21  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=49.9

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+.|.|.+++..|+|.|+|.|.|..|.....+.|.... +|.+...+.   ...+..+.|.|.+.+.++.. +.|
T Consensus       274 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-v~W  346 (404)
T 3p3y_A          274 NKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA-APYWLDEPKNLILAPGEDGRLVCRANGNPKPT-VQW  346 (404)
T ss_dssp             GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE-EEEEEECCCCEEECTTCCEEEECEEEEESCCE-EEE
T ss_pred             CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC-CCeeeccCCcceeecCCcEEEEEEccccCCCc-eEE
Confidence            45899999999999999999999999988877665422 122222111   12467899999998766553 443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.39  E-value=1.3e-06  Score=63.75  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceeecC-CCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFRSH-PQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~-~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      +.|.|..+...|.|.|+|.|.|..|....++.|..  .|........ .....+..+.|.|.+.+.++...+.|
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W  267 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHW  267 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEE
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEE
Confidence            57999999999999999999999999888776654  3321111111 11224688999999987766544553

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.38  E-value=7.5e-07  Score=65.72  Aligned_cols=72  Identities=17%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC--CceeEEE----EEEe--ccCCC--ceeecC-CCCCCCCeEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP--MGKHRAY----LELS--GKPNP--AIFRSH-PQGRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~~~----i~l~--~~P~p--~~~~~~-~~~~~~~~~~L~   74 (123)
                      +.|+...    .+.|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.  ..|..  +.+... .....+..+.|.
T Consensus       174 ~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~  249 (329)
T 3oq3_B          174 GTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANIT  249 (329)
T ss_dssp             SSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEE
T ss_pred             CceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEE
Confidence            4566554    268999999999999999999998  7665543    4444  33322  222111 011257789999


Q ss_pred             EEeCCCC
Q psy17207         75 WMVSSYT   81 (123)
Q Consensus        75 w~~~s~~   81 (123)
                      |.+.+.+
T Consensus       250 C~~~g~p  256 (329)
T 3oq3_B          250 CTAVSTS  256 (329)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9998776

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.38  E-value=1.8e-06  Score=60.77  Aligned_cols=77  Identities=14%  Similarity=0.198  Sum_probs=47.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEec-cCCCceee-cCC--CCCCCCeEEEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSG-KPNPAIFR-SHP--QGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~-~P~p~~~~-~~~--~~~~~~~~~L~w~   76 (123)
                      ++|+.+..+  +....|+|++++.+|+|.|.|.+.|..+...   ..+.|.. .+.+|.+. ..+  ....+..+.|.|.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~  144 (227)
T 1mju_H           65 KNKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCL  144 (227)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEE
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEE
Confidence            478888643  4577999999999999999999999643211   2344443 22333322 111  1124678999999


Q ss_pred             eCCCCC
Q psy17207         77 VSSYTP   82 (123)
Q Consensus        77 ~~s~~p   82 (123)
                      +.+..|
T Consensus       145 ~~g~~P  150 (227)
T 1mju_H          145 VKGYFP  150 (227)
T ss_dssp             EEEEBS
T ss_pred             eecEeC
Confidence            876533

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.38  E-value=1e-06  Score=64.75  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc----eeEEEEEEec--cC--CCceeecCCC---CCCCCeEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG----KHRAYLELSG--KP--NPAIFRSHPQ---GRLPNSYNITW   75 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G----~~~~~i~l~~--~P--~p~~~~~~~~---~~~~~~~~L~w   75 (123)
                      .|+.+..  ..+.|.|.+++..|+|.|+|.|.|..|    .....+.|..  .+  .+|.+.....   ...+..+.|.|
T Consensus       171 ~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C  248 (339)
T 3o4o_C          171 EKFLSVR--GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPC  248 (339)
T ss_dssp             SSEEECT--TSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCC
T ss_pred             ceeEEcC--CcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEE
Confidence            5666542  235899999999999999999999998    3444555443  22  2444443221   12467889999


Q ss_pred             Ee---CCCCCCcce
Q psy17207         76 MV---SSYTPLEEF   86 (123)
Q Consensus        76 ~~---~s~~pi~~y   86 (123)
                      .+   .+.++...+
T Consensus       249 ~~~~~~g~P~~~~v  262 (339)
T 3o4o_C          249 KVFLGTGTPLTTML  262 (339)
T ss_dssp             CEEESSSCCSSCEE
T ss_pred             EEECCCCCCCCceE
Confidence            98   666634333

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.38  E-value=4.5e-07  Score=70.10  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=45.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeec--CCCCCCCCeEEEEEEeCCCCCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRS--HPQGRLPNSYNITWMVSSYTPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~--~~~~~~~~~~~L~w~~~s~~pi~~y~   87 (123)
                      .+.|.|.+++.+|+|.|+|+|.|. ......+.|..+|.......  ......+..+.|.|.+.+.++. .+.
T Consensus       289 ~~~L~I~~v~~~D~G~Y~C~A~N~-~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p-~i~  359 (423)
T 3qs7_E          289 ILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQI-RCT  359 (423)
T ss_dssp             EEEEEESSCCTTTCEEEEEEETTE-EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCC-EEE
T ss_pred             EEEEEEeecCHHHCEEEEEEEecC-CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCC-eEE
Confidence            357999999999999999999999 44445555554432111110  0111246788999999887764 344

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.38  E-value=1.5e-06  Score=66.78  Aligned_cols=77  Identities=14%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc------------e--eEEEEEEecc-CCCce-eecC--CCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG------------K--HRAYLELSGK-PNPAI-FRSH--PQG   65 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G------------~--~~~~i~l~~~-P~p~~-~~~~--~~~   65 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|+|.|.|..|            .  ....+.|... +.+|. +...  ...
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~  144 (457)
T 1hzh_H           65 QDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKS  144 (457)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCC
T ss_pred             cCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccc
Confidence            478888653  4577999999999999999999999876            1  1234444432 22333 2221  112


Q ss_pred             CCCCeEEEEEEeCCCCC
Q psy17207         66 RLPNSYNITWMVSSYTP   82 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~p   82 (123)
                      ..+..+.|.|.+.+..|
T Consensus       145 ~~g~~v~L~C~~~g~~P  161 (457)
T 1hzh_H          145 TSGGTAALGCLVKDYFP  161 (457)
T ss_dssp             CTTCCEEEEEEEESBBS
T ss_pred             cCCCcEEEEEEEeEEeC
Confidence            35788999999877644

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.38  E-value=1.6e-06  Score=61.32  Aligned_cols=77  Identities=12%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCc---e----eEEEEEEecc---CCCceee-cCCC---CCCCCe
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG---K----HRAYLELSGK---PNPAIFR-SHPQ---GRLPNS   70 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~----~~~~i~l~~~---P~p~~~~-~~~~---~~~~~~   70 (123)
                      .+|+.+.. .+....|.|.+++.+|+|.|.|.+.|..|   .    ....+.|...   +.+|.+. ..+.   ...+..
T Consensus        59 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  138 (238)
T 1bec_A           59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQK  138 (238)
T ss_dssp             CTTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCS
T ss_pred             cceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCc
Confidence            47888764 24567999999999999999999999742   1    1123445432   2344433 2111   114678


Q ss_pred             EEEEEEeCCCCC
Q psy17207         71 YNITWMVSSYTP   82 (123)
Q Consensus        71 ~~L~w~~~s~~p   82 (123)
                      +.|.|.+.+..|
T Consensus       139 ~~L~C~~~g~~P  150 (238)
T 1bec_A          139 ATLVCLARGFFP  150 (238)
T ss_dssp             CSEEEEEEEEBS
T ss_pred             eEEEEEEeeEeC
Confidence            899999876533

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.37  E-value=4.6e-07  Score=57.22  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=37.9

Q ss_pred             CCCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+|+.+...   ....+|+|.+++.+|+|.|+|.+.|..|.....+.|..
T Consensus        74 ~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  123 (126)
T 1eaj_A           74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  123 (126)
T ss_dssp             TTTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCeeEEEcccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEE
Confidence            467776532   23467999999999999999999999998888877764

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.37  E-value=4.8e-07  Score=61.67  Aligned_cols=37  Identities=22%  Similarity=0.428  Sum_probs=34.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .+.|.|.+++.+|+|.|+|.|.|.+|....++.|...
T Consensus       175 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             SSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             CCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            4589999999999999999999999999999888765

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.37  E-value=3.4e-07  Score=69.05  Aligned_cols=47  Identities=40%  Similarity=0.375  Sum_probs=39.5

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+.    .+.|.|.++..+|+|.|+|+|.|.+|.+.++..|.+
T Consensus       335 ~l~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V  381 (384)
T 3kld_A          335 PLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV  381 (384)
T ss_dssp             ECCCBTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCccEEEe----CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEE
Confidence            35566788764    248999999999999999999999999999887764

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.37  E-value=3.7e-07  Score=59.55  Aligned_cols=47  Identities=26%  Similarity=0.357  Sum_probs=38.2

Q ss_pred             CCCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..|..+...   ....+|+|.+++.+|+|.|+|.+.|..|..+++++|.+
T Consensus        69 ~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           69 RGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             TTCEEECTTTGGGTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceEEEecCCccCCeEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            356665422   12457999999999999999999999999999998874

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.37  E-value=2.6e-06  Score=62.24  Aligned_cols=88  Identities=10%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC-cee--E----EEEEEecc-----------C--CCceeecCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM-GKH--R----AYLELSGK-----------P--NPAIFRSHP   63 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G~~--~----~~i~l~~~-----------P--~p~~~~~~~   63 (123)
                      ++|+.+..  .+...+|+|.+++.+|+|.|+|.+.|.. |..  .    ..+.|...           |  .++.+...+
T Consensus        87 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p  166 (291)
T 2gki_A           87 KGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSP  166 (291)
T ss_dssp             BTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSC
T ss_pred             CCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCC
Confidence            47887764  2456799999999999999999999985 211  1    13333331           1  122222111


Q ss_pred             C---CCCCCeEEEEEEeCCCCCCc----ceEEEeEEc
Q psy17207         64 Q---GRLPNSYNITWMVSSYTPLE----EFKIKYRKI   93 (123)
Q Consensus        64 ~---~~~~~~~~L~w~~~s~~pi~----~y~v~yr~~   93 (123)
                      .   ...+..+.|.|.+.+.++..    -...|||..
T Consensus       167 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~  203 (291)
T 2gki_A          167 SSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQK  203 (291)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEEC
T ss_pred             CEEEEcCCCcEEEEEEcCCccccccccceeEEEEEEC
Confidence            1   12578999999987665432    145577774

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.36  E-value=6.8e-07  Score=60.42  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=43.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|.....+  ...+.++..    ....+..+.|.|.+.+.+ ...+.|
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l~V--~~~~~~~~~----~v~~g~~~~l~C~~~~~p-~~~v~W  131 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV--FGLTANSDT----HLLQGQSLTLTLESPPGS-SPSVQC  131 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEEEEEEE--EEEEESSCS----EEETTCCEEEEEECCTTC-CCEEEE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCcEEEEE--EEecCCCCc----eeecCCCEEEEEEcCCCC-CCEEEE
Confidence            45699999999999999999999977554433  322211111    112467899999997764 334553

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.36  E-value=8.3e-07  Score=70.10  Aligned_cols=80  Identities=15%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEE--eccCCCceeecCCCC--CCCCeEEEEEEeCCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-RAYLEL--SGKPNPAIFRSHPQG--RLPNSYNITWMVSSY   80 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l--~~~P~p~~~~~~~~~--~~~~~~~L~w~~~s~   80 (123)
                      +.|+.+..+   ++|.|.+++.+|+|.|+|.+.|..|.. ...+.|  ...|.+|.+......  .....+.|.|.+.+.
T Consensus       423 ~~r~~~~~~---~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~  499 (581)
T 3o3u_N          423 DSVARVLPN---GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGS  499 (581)
T ss_dssp             GGTSEECTT---SCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEE
T ss_pred             CCcEEEcCC---ceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCC
Confidence            346666433   379999999999999999999999988 554444  455666655432221  123445679998764


Q ss_pred             CCCcceEE
Q psy17207         81 TPLEEFKI   88 (123)
Q Consensus        81 ~pi~~y~v   88 (123)
                      .|...+.|
T Consensus       500 ~P~~~i~W  507 (581)
T 3o3u_N          500 YPAGTLSW  507 (581)
T ss_dssp             BSCCEEEE
T ss_pred             CCCCeEEE
Confidence            23334443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.36  E-value=2.4e-06  Score=61.38  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=49.2

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCcee----EEEEEEeccCCCceeecCCC--CCCCCeEEEEEEeCCCCCCcceEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH----RAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFKIK   89 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~----~~~i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~~pi~~y~v~   89 (123)
                      ....|.|.+++.+|+|.|+|.+.|..|..    ...+.|.+.+.+|.+...+.  ...++.+.|.|.+...++  .|. |
T Consensus        58 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~--~~~-w  134 (242)
T 1p6f_A           58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MFL-L  134 (242)
T ss_dssp             CEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCS--EEE-E
T ss_pred             ceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCC--EEE-E
Confidence            46789999999999999999999876532    23455555433444432221  125789999999876543  444 4


Q ss_pred             eEE
Q psy17207         90 YRK   92 (123)
Q Consensus        90 yr~   92 (123)
                      |+.
T Consensus       135 ~k~  137 (242)
T 1p6f_A          135 LKE  137 (242)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.36  E-value=5.8e-07  Score=69.36  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=36.2

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+...   ++|.|.+++.+|+|.|+|+|.|..|.+.+++.+..
T Consensus       389 ~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v  431 (440)
T 3zyj_A          389 VRIAVLSD---GTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV  431 (440)
T ss_dssp             SSEEECTT---CCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ceEEEccC---CeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence            46665433   46999999999999999999999999999877764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.36  E-value=7.5e-07  Score=66.61  Aligned_cols=69  Identities=25%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC---CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP---QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~---~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      +.|.|.++..+|+|.|+|.|.|..|.....+.|.... ||.+...+   ....+..+.|.|.+.+.++. .+.|
T Consensus       275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~v~W  346 (403)
T 3laf_A          275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPWFLNHPSNLYAYESMDIEFECAVSGKPVP-TVNW  346 (403)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-EEEEEECCCCEECCTTCCEEECCEEEEESCC-EEEE
T ss_pred             cEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC-CCcEeecCcceEEecCCeEEEEEEEeeccCC-EEEE
Confidence            4799999999999999999999999998876665421 12222111   11246789999998876554 3443

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.36  E-value=1.3e-06  Score=61.61  Aligned_cols=76  Identities=13%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCcee------EEEEEEec---cCCCceee-cCCCC---CCCCeEE
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKH------RAYLELSG---KPNPAIFR-SHPQG---RLPNSYN   72 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~------~~~i~l~~---~P~p~~~~-~~~~~---~~~~~~~   72 (123)
                      +|+.+.. .+....|.|.+++.+|+|.|+|.|.|..+..      ...+.|..   .+.+|.+. ..+..   ..+..+.
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~  144 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  144 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEE
Confidence            6887764 3457799999999999999999999875421      12344443   22334332 21111   1257899


Q ss_pred             EEEEeCCCCC
Q psy17207         73 ITWMVSSYTP   82 (123)
Q Consensus        73 L~w~~~s~~p   82 (123)
                      |.|.+.+.+|
T Consensus       145 L~C~~~g~~p  154 (246)
T 4dzb_B          145 LVCLATGFYP  154 (246)
T ss_dssp             EEEEEEEEBS
T ss_pred             EEEEEccCcC
Confidence            9999876544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.35  E-value=1.8e-06  Score=59.95  Aligned_cols=71  Identities=11%  Similarity=-0.059  Sum_probs=41.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEE-EEEecc-CCCcee-ecCCC---CCCCCeEEEEEEeCCCC-CCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELSGK-PNPAIF-RSHPQ---GRLPNSYNITWMVSSYT-PLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-i~l~~~-P~p~~~-~~~~~---~~~~~~~~L~w~~~s~~-pi~~y~v   88 (123)
                      ..|.|.+++.+|+|.|+|.|.|..+..... +.|... +.++.+ .....   ...+..+.|.|.+.+.+ +...+.|
T Consensus        64 ~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W  141 (213)
T 2x1w_L           64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW  141 (213)
T ss_dssp             TEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEE
T ss_pred             ccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEE
Confidence            469999999999999999999965544332 444331 222222 22111   12578899999987643 2233454

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.35  E-value=9.3e-07  Score=63.31  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=50.2

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcC--CceeE--EEEEEec---cCCCceee-cCCCC---CCCCeEEEE
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNP--MGKHR--AYLELSG---KPNPAIFR-SHPQG---RLPNSYNIT   74 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~--~~i~l~~---~P~p~~~~-~~~~~---~~~~~~~L~   74 (123)
                      +|+.+.. .+....|.|.+++.+|+|.|+|.+.|.  .+...  ..+.|..   .+.+|.+. ..+..   ..+..+.|.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence            7888874 244678999999999999999999984  22221  1344443   22233322 21111   125789999


Q ss_pred             EEeCCCCCC-cceE
Q psy17207         75 WMVSSYTPL-EEFK   87 (123)
Q Consensus        75 w~~~s~~pi-~~y~   87 (123)
                      |.+.+.+|. ..+.
T Consensus       168 C~~~g~~p~~~~v~  181 (268)
T 3pl6_D          168 CLATGFYPDHVELS  181 (268)
T ss_dssp             EEEEEEBSSCEEEE
T ss_pred             EEECcccCCCeEEE
Confidence            998775443 2444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.35  E-value=2.4e-06  Score=66.55  Aligned_cols=64  Identities=11%  Similarity=0.205  Sum_probs=46.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC----CCCCCeEEEEEEeCCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ----GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~----~~~~~~~~L~w~~~s~~p   82 (123)
                      +.|.|.++...| |.|+|.|.|..|.......|.....|..+...+.    ...+..+.|.|.+.+.+|
T Consensus       281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p  348 (523)
T 2rcj_C          281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH  348 (523)
T ss_pred             EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccC
Confidence            589999999999 9999999999999877666653222332222211    124778999999987654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.35  E-value=1.6e-06  Score=61.86  Aligned_cols=78  Identities=12%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCcee---E--EEEEEeccCC--------------CceeecCCC---CCCCCeEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH---R--AYLELSGKPN--------------PAIFRSHPQ---GRLPNSYNI   73 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~---~--~~i~l~~~P~--------------p~~~~~~~~---~~~~~~~~L   73 (123)
                      ....|.|.+++.+|+|.|.|.|.|..|..   .  ..+.|...+.              ++.+...+.   ...+..+.|
T Consensus        77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  156 (259)
T 3omz_A           77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTL  156 (259)
T ss_dssp             CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEE
T ss_pred             CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEE
Confidence            45579999999999999999999987631   1  1234443211              122222221   125789999


Q ss_pred             EEEeCCCCCCcceEEEeEEcC
Q psy17207         74 TWMVSSYTPLEEFKIKYRKIP   94 (123)
Q Consensus        74 ~w~~~s~~pi~~y~v~yr~~~   94 (123)
                      .|.+.+..|.. ...|||...
T Consensus       157 ~C~~~~~~~~~-~v~W~k~~~  176 (259)
T 3omz_A          157 NCLYETSWWSY-YIFWYKRLP  176 (259)
T ss_dssp             CCEEECCCSSC-EEEEEEECT
T ss_pred             EEECCCccCCc-eEEEeeeCC
Confidence            99876643432 345677653

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.34  E-value=3e-07  Score=58.21  Aligned_cols=51  Identities=25%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEeccCCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELSGKPNP   56 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~~~P~p   56 (123)
                      ++|+.+..  .....+|+|.+++.+|+|.|.|.+.|..+..  ...+.|.+.|.+
T Consensus        59 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p~~  113 (116)
T 2or8_A           59 SSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEL  113 (116)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEECSC
T ss_pred             CCeEEEecCCCCCeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEECCcc
Confidence            56777632  2345689999999999999999999976543  667777776543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.34  E-value=7.2e-07  Score=62.03  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|+|.+++.+|+|.|+|.|.|..|....++.|..
T Consensus       170 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  205 (213)
T 2x1w_L          170 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  205 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEE
Confidence            457999999999999999999999999998877765

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.34  E-value=1.5e-06  Score=62.94  Aligned_cols=77  Identities=13%  Similarity=0.235  Sum_probs=49.4

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCc----e----eEEEEEEecc---CCCceeecC-CCC---CCCC
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG----K----HRAYLELSGK---PNPAIFRSH-PQG---RLPN   69 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G----~----~~~~i~l~~~---P~p~~~~~~-~~~---~~~~   69 (123)
                      ++|+.+.. .+....|.|.+++.+|+|.|+|.|.|..|    .    ....+.|...   +.+|.+... +..   ..+.
T Consensus        87 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~  166 (279)
T 2wbj_D           87 KDKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQ  166 (279)
T ss_dssp             SSSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHS
T ss_pred             CCcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCC
Confidence            47898875 35577999999999999999999999432    0    1123444431   234443321 111   0256


Q ss_pred             eEEEEEEeCCCCC
Q psy17207         70 SYNITWMVSSYTP   82 (123)
Q Consensus        70 ~~~L~w~~~s~~p   82 (123)
                      .+.|.|.+.+..|
T Consensus       167 ~v~L~C~~~g~~P  179 (279)
T 2wbj_D          167 KATLVCLATGFYP  179 (279)
T ss_dssp             CCEEEEEEEEEBS
T ss_pred             ceEEEEEEeeEcC
Confidence            7899999876544

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.33  E-value=4.3e-07  Score=65.26  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=40.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCce---eEEEEEEecc-CCCceeecCC-----CCCCCCeEEEEEEeCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSGK-PNPAIFRSHP-----QGRLPNSYNITWMVSS   79 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~---~~~~i~l~~~-P~p~~~~~~~-----~~~~~~~~~L~w~~~s   79 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|.   ...++.|... |..+......     ....+..+.|.|.+..
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~  121 (289)
T 3mjg_X           50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD  121 (289)
T ss_dssp             EEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSC
T ss_pred             eEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCC
Confidence            478999999999999999999999987   4456666553 3332221110     1124678899998873

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.33  E-value=2e-06  Score=65.56  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=47.0

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE----------EEEEEecc-CCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR----------AYLELSGK-PNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----------~~i~l~~~-P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      ..+.|.|.++...|.|.|+|.|.|.+|...          ..+.+... +.+|.+........+..+.|.|.+.+..|
T Consensus       140 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P  217 (450)
T 1z7z_I          140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP  217 (450)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTT
T ss_pred             cceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCC
Confidence            356899999999999999999999988633          22333333 34454432222235789999999988856

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.33  E-value=1.2e-06  Score=65.25  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..++|+|.+++.+|+|.|+|+|.|.+|.+..++.|..
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  343 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF  343 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECS
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCceeeEEEEEe
Confidence            3678999999999999999999999999999988875

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.31  E-value=7e-07  Score=65.40  Aligned_cols=40  Identities=28%  Similarity=0.371  Sum_probs=35.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPA   57 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~   57 (123)
                      +.|.|.+++..|+|.|+|.|.|.+|....++.|...+.|+
T Consensus       291 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             CCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred             cEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence            4799999999999999999999999999988887654443

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.31  E-value=4.7e-07  Score=56.01  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=28.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLEL   50 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l   50 (123)
                      .+.|.|.+++..|+|.|+|.|.|.+|... ..+.|
T Consensus        75 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l  109 (112)
T 3so5_A           75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL  109 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             ceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEE
Confidence            47899999999999999999999999843 44444

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.31  E-value=1.1e-06  Score=55.21  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+...+....|+|.+++.+|+|.|.|.|.|..
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           59 PSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             CTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSS
T ss_pred             CceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            479988766677899999999999999999999963

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.30  E-value=7.8e-07  Score=56.67  Aligned_cols=51  Identities=20%  Similarity=0.241  Sum_probs=33.7

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce--eEEEEEEeccCCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP   56 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--~~~~i~l~~~P~p   56 (123)
                      .+|+.+...  ....+|+|.+++.+|+|.|+|.+.|..|.  ....+.|.+.+.|
T Consensus        67 ~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           67 KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             TTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             cCcEEEecCCcCCeEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            467776521  23568999999999999999999998875  3556666654433

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.30  E-value=4.4e-07  Score=62.05  Aligned_cols=48  Identities=31%  Similarity=0.558  Sum_probs=38.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      +|..++|+.+...  .+.|.|.++...|+|.|+|.|.|.+|...+ .+.|.
T Consensus       149 ~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~  197 (208)
T 3r4d_A          149 SLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD  197 (208)
T ss_dssp             ECCCCSSEEEETT--TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEEC
T ss_pred             eCCCCCCeEEcCC--CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeee
Confidence            3456678877643  368999999999999999999999999886 34554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.29  E-value=7.2e-07  Score=61.69  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEeccCCCceeecCCC--CCCCCeEEEEEEe-CCCCCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSGKPNPAIFRSHPQ--GRLPNSYNITWMV-SSYTPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~-~s~~pi~~y~   87 (123)
                      ...|.|.+++.+|+|.|+|.+.|. |.....  +.|...+.+|.+.....  ...+..+.|.|.+ .+.++ ..+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~-~~v~  144 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPE-AEVF  144 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSC-CEEE
T ss_pred             eEEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCC-CeEE
Confidence            567999999999999999999986 333333  34444444455443221  1246889999998 44443 3344

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.29  E-value=1.1e-06  Score=64.76  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=38.3

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCC-cee---EEEEEEec--cCC---CceeecCC-----CCCCCCeEEEEEEeCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPM-GKH---RAYLELSG--KPN---PAIFRSHP-----QGRLPNSYNITWMVSS   79 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~-G~~---~~~i~l~~--~P~---p~~~~~~~-----~~~~~~~~~L~w~~~s   79 (123)
                      ..|.|.+++.+|+|.|+|.|.|.. |..   ...+.|..  .+.   +|.+....     ....+..+.|.|.+.+
T Consensus       177 ~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~  252 (349)
T 4dep_C          177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF  252 (349)
T ss_dssp             TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEE
T ss_pred             CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEE
Confidence            579999999999999999999997 665   45555543  221   44443322     1124677889999874

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.29  E-value=1.1e-06  Score=65.53  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=50.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCCCcceEEEeE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEFKIKYR   91 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi~~y~v~yr   91 (123)
                      ....|.|.+++..|+|.|+|.|.|..|.....+.|.... +|.+...+.   ...+..+.|.|.+.+.++.. +. ||+
T Consensus       255 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-v~-W~~  330 (382)
T 1cs6_A          255 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITDTEADIGSDLRWSCVASGKPRPA-VR-WLR  330 (382)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE-EEEEEECCCCEEEETTCCEEEECEEEEESCCE-EE-EEE
T ss_pred             CCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec-CCCcccCCCccEEcCCCeEEEEEEeeeecCCE-EE-EEE
Confidence            346899999999999999999999999988876665421 122221111   12467899999987766553 44 344

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.28  E-value=1.4e-06  Score=57.03  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      .+||.+.  ..+....|+|.+++.+|+|.|.|.+.|..+..
T Consensus        61 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~  101 (129)
T 3rrq_A           61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKL  101 (129)
T ss_dssp             -CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGC
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCc
Confidence            3699887  34567899999999999999999999988765

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.28  E-value=1.6e-06  Score=62.29  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus       250 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  286 (290)
T 2o26_X          250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV  286 (290)
T ss_dssp             EEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEE
Confidence            3568999999999999999999999999999888765

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.28  E-value=1.3e-06  Score=55.12  Aligned_cols=49  Identities=20%  Similarity=0.319  Sum_probs=36.4

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC-c---eeEEEEEEeccC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM-G---KHRAYLELSGKP   54 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~-G---~~~~~i~l~~~P   54 (123)
                      ++|+.+..  ......|+|++++.+|+|.|.|.+.+.. |   .....+.|.+.|
T Consensus        54 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           54 NGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             ETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             cCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEec
Confidence            47888863  3446789999999999999999999986 5   233455665554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.28  E-value=9.6e-07  Score=59.25  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE--EE--EEeccCCCceeec--CCCCCCCCeEEEEEEeCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YL--ELSGKPNPAIFRS--HPQGRLPNSYNITWMVSS   79 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~i--~l~~~P~p~~~~~--~~~~~~~~~~~L~w~~~s   79 (123)
                      +.|+.+...   +.|.|.+++..|+|.|+|.|.|..+....  .+  .+...|.......  ......+..+.|.|.+.+
T Consensus        48 ~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g  124 (189)
T 2v5t_A           48 DNRFAMLAN---NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG  124 (189)
T ss_dssp             CTTEEECTT---SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEE
T ss_pred             CCeEEEecC---CCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEcc
Confidence            456666432   47999999999999999999999855432  23  3333322110000  001124778999999876


Q ss_pred             CCCCcceEE
Q psy17207         80 YTPLEEFKI   88 (123)
Q Consensus        80 ~~pi~~y~v   88 (123)
                      .++. .+.|
T Consensus       125 ~p~~-~v~W  132 (189)
T 2v5t_A          125 SPEP-AISW  132 (189)
T ss_dssp             ESCC-EEEE
T ss_pred             CCCC-eEEE
Confidence            6444 4443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.27  E-value=7.5e-07  Score=63.29  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCcee
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIF   59 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~   59 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.....+|.+
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~  242 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR  242 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCee
Confidence            35689999999999999999999999999998888764444433

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.27  E-value=1.2e-06  Score=60.95  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccC------------CCceeecCCC---CCCCCeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKP------------NPAIFRSHPQ---GRLPNSYNITWMV   77 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P------------~p~~~~~~~~---~~~~~~~~L~w~~   77 (123)
                      ..+.|.|.+++..|+|.|+|.|.|..|...   ..+.|...|            .++.+...+.   ...+..+.|.|.+
T Consensus        63 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~  142 (218)
T 3k0w_A           63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA  142 (218)
T ss_dssp             CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE
T ss_pred             CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe
Confidence            356899999999999999999999998653   345554432            1123322211   1246789999999


Q ss_pred             CCCCCCcceEE
Q psy17207         78 SSYTPLEEFKI   88 (123)
Q Consensus        78 ~s~~pi~~y~v   88 (123)
                      .+.++. .|.|
T Consensus       143 ~g~p~~-~v~W  152 (218)
T 3k0w_A          143 VGSPIP-HYQW  152 (218)
T ss_dssp             EBSSCC-EEEE
T ss_pred             cccCCC-eEEE
Confidence            776554 3443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.26  E-value=2.5e-06  Score=67.83  Aligned_cols=65  Identities=9%  Similarity=0.054  Sum_probs=45.8

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+.|.|.+++.+|+|.|+|+|.|.+|....++.|... .+|.+.....     ...|.|.+.+.++. .+.|
T Consensus       377 ~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~-~~P~i~~~~~-----~~~l~C~a~g~P~p-~i~W  441 (527)
T 3qs9_E          377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR-RKPQVLAEAS-----ASQASCFSDGYPLP-SWTW  441 (527)
T ss_dssp             SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC---CCCEEEECCC-----CE---EEEECSSCC-EEEE
T ss_pred             CcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe-cCCeEEEeCC-----CCEEEEEEEEEcCC-eEEE
Confidence            4589999999999999999999999999998887754 3445543221     23579999887665 4443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.26  E-value=3.5e-06  Score=59.24  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce--------eE--EEEEEe-ccCCCceee-cCC--CCCCCCe
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK--------HR--AYLELS-GKPNPAIFR-SHP--QGRLPNS   70 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~--------~~--~~i~l~-~~P~p~~~~-~~~--~~~~~~~   70 (123)
                      +|+.+..+  .....|.|.+++.+|+|.|.|.+.|..|.        ..  ..+.|. ..+.+|.+. ..+  ....+..
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  149 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  149 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CE
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCc
Confidence            68888643  35678999999999999999999986311        11  134443 233344333 111  1124678


Q ss_pred             EEEEEEeCCCCC
Q psy17207         71 YNITWMVSSYTP   82 (123)
Q Consensus        71 ~~L~w~~~s~~p   82 (123)
                      +.|.|.+.+..|
T Consensus       150 v~L~C~~~~~~P  161 (232)
T 3qhz_H          150 AALGCLVKDYFP  161 (232)
T ss_dssp             EEEEEEEEEEBS
T ss_pred             EEEEEEEeeEeC
Confidence            999999876444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.26  E-value=7.4e-06  Score=63.38  Aligned_cols=83  Identities=12%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce------e--EEEEEEec-cCCCceee-cCC-CCCCCCeEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK------H--RAYLELSG-KPNPAIFR-SHP-QGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~------~--~~~i~l~~-~P~p~~~~-~~~-~~~~~~~~~   72 (123)
                      .+|+.+..+  +....|.|.+++.+|+|.|.|.|.|..|.      .  ...+.|.. .+.+|.+. ... ....+..+.
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~  145 (475)
T 1iga_A           66 RGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVV  145 (475)
T ss_pred             CCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEE
Confidence            468887643  35678999999999999999999998762      1  12344442 23333322 211 113578899


Q ss_pred             EEEEeCCCCCC--cceEE
Q psy17207         73 ITWMVSSYTPL--EEFKI   88 (123)
Q Consensus        73 L~w~~~s~~pi--~~y~v   88 (123)
                      |.|.+.+..|.  ..+.|
T Consensus       146 L~C~~~g~~P~~p~~v~W  163 (475)
T 1iga_A          146 IACLVQGFFPQEPLSVTW  163 (475)
T ss_pred             EEEEEeeecCCCceEEEE
Confidence            99999876443  24444

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.26  E-value=1e-06  Score=65.70  Aligned_cols=47  Identities=32%  Similarity=0.363  Sum_probs=39.2

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+.    .+.|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       334 ~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  380 (382)
T 1cs6_A          334 PLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV  380 (382)
T ss_dssp             ECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCCceEEEE----CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEE
Confidence            34556777764    248999999999999999999999999999887764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.25  E-value=1.9e-06  Score=64.42  Aligned_cols=47  Identities=28%  Similarity=0.288  Sum_probs=39.2

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +..++++.+..   .+.|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       353 ~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  399 (403)
T 3laf_A          353 VIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV  399 (403)
T ss_dssp             CCCSSSEEEET---TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCCCCcEEEec---CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEE
Confidence            34556666653   357999999999999999999999999999988875

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.25  E-value=4.2e-06  Score=60.63  Aligned_cols=75  Identities=15%  Similarity=0.203  Sum_probs=48.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEec-cCCCceee-cCC--CCCCCCeEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG-KPNPAIFR-SHP--QGRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~-~P~p~~~~-~~~--~~~~~~~~~L~   74 (123)
                      ++|+.+..+  .....|+|.+++.+|+|.|.|.+.|..+..     ...+.|.. .+.+|.+. ..+  ....+..+.|.
T Consensus        71 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~  150 (261)
T 2xqy_G           71 KDKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG  150 (261)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEE
Confidence            478888643  356789999999999999999999964311     12344443 22333322 111  11246789999


Q ss_pred             EEeCCC
Q psy17207         75 WMVSSY   80 (123)
Q Consensus        75 w~~~s~   80 (123)
                      |.+.+.
T Consensus       151 C~~~g~  156 (261)
T 2xqy_G          151 CLVKGY  156 (261)
T ss_dssp             EEEEEE
T ss_pred             EEEEeE
Confidence            998764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.25  E-value=1.6e-06  Score=68.97  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi   83 (123)
                      ..+|.|.+++.+|+|.|+|.|.|..|.....+.|...|.+......+ .......+.|.|.+.++|+.
T Consensus       102 ~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P  169 (527)
T 3qs9_E          102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEP  169 (527)
T ss_dssp             EEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCC
T ss_pred             EEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceecCC
Confidence            34699999999999999999999999988877776543221111000 00123445689998887654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.24  E-value=3.2e-06  Score=62.29  Aligned_cols=60  Identities=22%  Similarity=0.167  Sum_probs=42.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecC------CCCCCCCeEEEEEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSH------PQGRLPNSYNITWMV   77 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~------~~~~~~~~~~L~w~~   77 (123)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.....+..+...      .....+..+.|.|.+
T Consensus        79 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  144 (349)
T 4dep_C           79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPN  144 (349)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCS
T ss_pred             CEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCC
Confidence            489999999999999999999999998877666543222111110      011246778999974

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.24  E-value=4e-06  Score=56.33  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=45.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEEEeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr   91 (123)
                      ...|.|.  +..|+|.|+|.|.|.. .....+.|...|.............+..+.|.|.+.+.++...+. ||+
T Consensus        50 ~~~l~i~--~~~d~G~Y~C~~~n~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~-W~~  120 (184)
T 3b5h_A           50 KTEFKVD--SDDQWGEYSCVFLPEP-MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA-WYK  120 (184)
T ss_dssp             EEEEEEC--GGGCCEEEEEEEESTT-SCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEE-EEE
T ss_pred             cEEEEEe--chhhCeEEEEEEECCc-CcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEE-EEE
Confidence            4467777  6899999999999943 355566666555432211111122578899999998877444555 444

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.24  E-value=1.8e-06  Score=57.38  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...|.|.+++..|+|.|+|.|.|..+.....+.|...|  ....... ....+..+.|.|.+.+..|...|.|
T Consensus        50 ~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W  120 (170)
T 3ry4_A           50 TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEW--LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTF  120 (170)
T ss_dssp             CSSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCS--EEEECSCSEECTTCCEEEEEEEGGGCCEEEEEE
T ss_pred             ccceEEEecccccCeEEEEEEeCCCceEeEEEEEECCc--eEecCCCceeecCCeEEEEEECCCCCCCceEEE
Confidence            34578889999999999999999887777777666532  2222111 1125778999999976666555554

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=5.3e-07  Score=57.35  Aligned_cols=47  Identities=30%  Similarity=0.403  Sum_probs=34.2

Q ss_pred             ccccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+. ..+..+.|.|.+++.+|+|.|+|.+    |.....+.|..
T Consensus        53 ~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V  100 (115)
T 2cr6_A           53 PLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRV  100 (115)
T ss_dssp             EECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEE
Confidence            35566777775 3466778999999999999999994    45554444443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.23  E-value=3.6e-06  Score=60.16  Aligned_cols=77  Identities=16%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC----ceeE--EEEEEe-ccCCCceee-cCC--CCCCCCeEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM----GKHR--AYLELS-GKPNPAIFR-SHP--QGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~----G~~~--~~i~l~-~~P~p~~~~-~~~--~~~~~~~~~L   73 (123)
                      .+|+.+..+  .....|+|++++.+|+|.|.|.+.|..    +...  ..+.|. ..+.+|.+. ..+  ....+..+.|
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  144 (253)
T 3liz_H           65 KGRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  144 (253)
T ss_dssp             TTTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEE
Confidence            478888643  356779999999999999999999862    2211  234444 233344332 111  1124788999


Q ss_pred             EEEeCCCCC
Q psy17207         74 TWMVSSYTP   82 (123)
Q Consensus        74 ~w~~~s~~p   82 (123)
                      .|.+.+..|
T Consensus       145 ~C~~~g~~P  153 (253)
T 3liz_H          145 GCLVKGYFP  153 (253)
T ss_dssp             EEEEEEEBS
T ss_pred             EEEEeeEeC
Confidence            999977333

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.23  E-value=1.7e-06  Score=59.53  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=34.4

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~   49 (123)
                      .++|+.+...   +.|.|.+++.+|+|.|+|.|.|.+|....++.
T Consensus       160 ~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~  201 (217)
T 2vr9_A          160 ASSRVRIVDG---GNLLISNVEPIDEGNYKCIAQNLVGTRESSYA  201 (217)
T ss_dssp             CCCSEEEETT---TEEEESSCCSTTCEEEEEEEEETTEEEECCCE
T ss_pred             cCCcEEecCC---CcEEEeeCCHHHCeEEEEEEEcccceeccccE
Confidence            4566666533   47999999999999999999999999987543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.23  E-value=5.1e-06  Score=67.99  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             cccCCCEEEEE----c-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC--CCCCCCeEEEEE
Q psy17207          3 LETTERRIMET----R-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP--QGRLPNSYNITW   75 (123)
Q Consensus         3 l~~d~R~~i~~----~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~--~~~~~~~~~L~w   75 (123)
                      |..++|+.+..    . ...+.|.|.++...|+|.|+|.|.|..|....++.|.....| .+....  ....+..+.|.|
T Consensus       470 l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p-~~~~~~~~~v~~G~~v~l~C  548 (816)
T 3dmk_A          470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKAIVAGETLIVTC  548 (816)
T ss_dssp             CCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC-EECCCCCEEEETTCCEEEEC
T ss_pred             CCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC-eeEccCCeEEecCCeEEEEE
Confidence            44556776531    1 223579999999999999999999999999887776643222 221111  112477889999


Q ss_pred             EeCCCCC
Q psy17207         76 MVSSYTP   82 (123)
Q Consensus        76 ~~~s~~p   82 (123)
                      .+.+.++
T Consensus       549 ~~~g~p~  555 (816)
T 3dmk_A          549 PVAGYPI  555 (816)
T ss_dssp             CEECSSE
T ss_pred             EecCCCC
Confidence            8877543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.23  E-value=4.9e-06  Score=58.82  Aligned_cols=77  Identities=14%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE--cCCce------eEEEEEEec-cCCCceee-cC-C-CCCCC-Ce
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT--NPMGK------HRAYLELSG-KPNPAIFR-SH-P-QGRLP-NS   70 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~--N~~G~------~~~~i~l~~-~P~p~~~~-~~-~-~~~~~-~~   70 (123)
                      ++|+.+..+  +....|+|++++.+|+|.|.|.+.  |..|.      ....+.|.. .+.+|.+. .. . ....+ ..
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~  143 (232)
T 1dn0_B           64 KSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSS  143 (232)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCS
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCc
Confidence            479988643  456799999999999999999999  43121      112444544 23334322 11 1 11235 78


Q ss_pred             EEEEEEeCCCCC
Q psy17207         71 YNITWMVSSYTP   82 (123)
Q Consensus        71 ~~L~w~~~s~~p   82 (123)
                      +.|.|.+.+..|
T Consensus       144 v~L~C~~~g~~P  155 (232)
T 1dn0_B          144 VAVGCLAQDFLP  155 (232)
T ss_dssp             EEEEEEEEEEBS
T ss_pred             EEEEEEEEEEeC
Confidence            999999876533

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.23  E-value=2.6e-06  Score=59.92  Aligned_cols=70  Identities=10%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCC-CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...|.|.+++..|+|.|+|.|.|..+.....+.+...|  ....... ....+..+.|.|.+....|...+.|
T Consensus        47 ~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~--~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W  117 (262)
T 3rjd_A           47 TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGW--LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY  117 (262)
T ss_dssp             SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSS--EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEE
T ss_pred             CCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccc--eEecCCCeEEecCCeEEEEEEccCCCCCceEEE
Confidence            46799999999999999999999998887777666432  2111111 1125778999999965555555553

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=98.23  E-value=5.1e-06  Score=58.49  Aligned_cols=83  Identities=13%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC-----ceeE-----EEEEEec-cCCCceee-cCC--CCCCCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM-----GKHR-----AYLELSG-KPNPAIFR-SHP--QGRLPN   69 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~-----G~~~-----~~i~l~~-~P~p~~~~-~~~--~~~~~~   69 (123)
                      .+|+.+..+  .....|+|.+++.+|+|.|.|.+.+..     +...     ..+.|.. .+.+|.+. ..+  ....+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~  144 (230)
T 3n9g_H           65 QGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGG  144 (230)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTC
T ss_pred             CCcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCC
Confidence            479988643  346679999999999999999999864     1111     1344432 22333332 111  122568


Q ss_pred             eEEEEEEeCCCCC-CcceEE
Q psy17207         70 SYNITWMVSSYTP-LEEFKI   88 (123)
Q Consensus        70 ~~~L~w~~~s~~p-i~~y~v   88 (123)
                      .+.|.|.+.+..| ...+.|
T Consensus       145 ~v~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H          145 TAALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE
T ss_pred             CEEEEEEEEeEECCCEEEEE
Confidence            8999999876434 333443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.22  E-value=3.3e-06  Score=59.45  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             CCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCC----ceeE--EEEEEec---cCCCceee-cCCCC---CCCCeEE
Q psy17207          7 ERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPM----GKHR--AYLELSG---KPNPAIFR-SHPQG---RLPNSYN   72 (123)
Q Consensus         7 ~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~----G~~~--~~i~l~~---~P~p~~~~-~~~~~---~~~~~~~   72 (123)
                      +|+.+... .....|.|.+++.+|+|.|.|.+.+..    +...  ..+.|..   .+.+|.+. ..+..   ..+..+.
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~  143 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence            78888753 446789999999999999999999632    1211  2344443   22333322 21111   1257899


Q ss_pred             EEEEeCCCCC
Q psy17207         73 ITWMVSSYTP   82 (123)
Q Consensus        73 L~w~~~s~~p   82 (123)
                      |.|.+.+.+|
T Consensus       144 l~C~~~g~~p  153 (245)
T 4ei6_B          144 LVCLATGFYP  153 (245)
T ss_dssp             EEEEEEEEBS
T ss_pred             EEEEEeeEeC
Confidence            9999876444

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.22  E-value=1.7e-06  Score=61.98  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=36.2

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      |+.+.  ...+.|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       246 ~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  288 (291)
T 1qz1_A          246 KHIFS--DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV  288 (291)
T ss_dssp             SEEEC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEc--CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEE
Confidence            55554  33468999999999999999999999999998887764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.22  E-value=3.3e-06  Score=61.54  Aligned_cols=64  Identities=17%  Similarity=0.093  Sum_probs=42.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEeccCCC--ceeecCCCCCCCCeEEEEEEeCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELSGKPNP--AIFRSHPQGRLPNSYNITWMVSSY   80 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~~~P~p--~~~~~~~~~~~~~~~~L~w~~~s~   80 (123)
                      ..+|.|.+++.+|+|.|+|.|. +..|.....+.|.....|  +...............+.|.+.+.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~  144 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGG  144 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEE
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCc
Confidence            4579999999999999999875 567777777777643222  222222222245666777876543

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.22  E-value=5.5e-06  Score=63.32  Aligned_cols=75  Identities=15%  Similarity=0.231  Sum_probs=49.9

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCcee-----EEEEEEec-cCCCc-eeecCC--CCCCCCeEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKH-----RAYLELSG-KPNPA-IFRSHP--QGRLPNSYNIT   74 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-----~~~i~l~~-~P~p~-~~~~~~--~~~~~~~~~L~   74 (123)
                      .+|+.+..+  +....|.|.+++.+|+|.|.|.|.|..|..     ...+.|.. .+.+| .+...+  ....+..+.|.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  144 (444)
T 1igt_B           65 KGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLG  144 (444)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEE
Confidence            468888643  456799999999999999999999986652     12344442 22233 332211  11357889999


Q ss_pred             EEeCCC
Q psy17207         75 WMVSSY   80 (123)
Q Consensus        75 w~~~s~   80 (123)
                      |.+.+.
T Consensus       145 C~~~g~  150 (444)
T 1igt_B          145 CLVKGY  150 (444)
T ss_dssp             EEEEEE
T ss_pred             EEEcce
Confidence            998765

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.22  E-value=1.6e-06  Score=59.82  Aligned_cols=40  Identities=25%  Similarity=0.405  Sum_probs=32.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPA   57 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~   57 (123)
                      +.|.|.++...|+|.|+|.|.|.+|....++.|..  .|.+|
T Consensus       185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             cEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            57999999999999999999999999988776654  45443

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.21  E-value=1.5e-06  Score=54.47  Aligned_cols=47  Identities=21%  Similarity=0.285  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-----CEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207          6 TERRIMETRG-----SRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~-----~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~   52 (123)
                      .+|+.+....     ...+|+|.+++.+|+|.|+|.+.| ..|.....+.|..
T Consensus        62 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V  114 (118)
T 3udw_C           62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV  114 (118)
T ss_dssp             CSSEEETTCCTTSCCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCcEEEecccccCCCCCcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEE
Confidence            4566664321     156899999999999999999999 7887777766654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.21  E-value=5.6e-07  Score=62.06  Aligned_cols=68  Identities=13%  Similarity=0.074  Sum_probs=43.0

Q ss_pred             EEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceee-cCCCCCCCCeEEEEEEe-CCCCCCcceEE
Q psy17207         20 LMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFR-SHPQGRLPNSYNITWMV-SSYTPLEEFKI   88 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~-~~~~~~~~~~~~L~w~~-~s~~pi~~y~v   88 (123)
                      |.|.+++..|+|.|+|.|.|..|...   ..+.|...|...... .......+..+.|.|.+ .+.++. .|.|
T Consensus        71 l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v~W  143 (217)
T 2vr9_A           71 RTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TLIW  143 (217)
T ss_dssp             SCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EEEE
T ss_pred             EEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eEEE
Confidence            47899999999999999999999874   345554433221111 11111246788999988 555443 3443

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.21  E-value=2.9e-06  Score=61.51  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=44.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCce---------e--E----EEEEEec-cCCCceeec-CC--C
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGK---------H--R----AYLELSG-KPNPAIFRS-HP--Q   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~---------~--~----~~i~l~~-~P~p~~~~~-~~--~   64 (123)
                      .+|+.+..+  .....|+|.+++.+|+|.|.|.+.|..|.         .  .    ..+.|.. .+.+|.+.. .+  .
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~  144 (257)
T 3bn9_D           65 KGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSK  144 (257)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC---
T ss_pred             CCceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCccc
Confidence            478988753  45678999999999999999999998751         1  1    1344443 223343321 11  1


Q ss_pred             CCCCCeEEEEEEeCCC
Q psy17207         65 GRLPNSYNITWMVSSY   80 (123)
Q Consensus        65 ~~~~~~~~L~w~~~s~   80 (123)
                      ...+..+.|.|.+.+.
T Consensus       145 ~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D          145 STSGGTAALGCLVKDY  160 (257)
T ss_dssp             --------CCCEEEEE
T ss_pred             ccCCCcEEEEEEEeeE
Confidence            1245678899998764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.21  E-value=1.3e-06  Score=58.82  Aligned_cols=46  Identities=28%  Similarity=0.460  Sum_probs=35.3

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      +..+.|+.+...   +.|.|.++..+|+|.|+|.|.|.+|.... .+.|.
T Consensus       141 ~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~  187 (192)
T 2iep_A          141 LRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE  187 (192)
T ss_dssp             CCCCSSEEECTT---SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ccCCCcEEEecC---CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEE
Confidence            445567766433   37999999999999999999999998854 34443

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.21  E-value=6.5e-06  Score=58.34  Aligned_cols=78  Identities=21%  Similarity=0.321  Sum_probs=48.8

Q ss_pred             cCCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcCC---c--ee----EEEEEEeccC-------CCceeecCCCC-
Q psy17207          5 TTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPM---G--KH----RAYLELSGKP-------NPAIFRSHPQG-   65 (123)
Q Consensus         5 ~d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~---G--~~----~~~i~l~~~P-------~p~~~~~~~~~-   65 (123)
                      .++|+.+....  ....|+|.+++.+|+|.|.|.+.|..   +  ..    ...+.|...|       .+..+...... 
T Consensus        65 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~  144 (242)
T 1hxm_B           65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAET  144 (242)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGG
T ss_pred             cCCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhc
Confidence            45899886432  47799999999999999999999863   1  11    1234454432       22222110011 


Q ss_pred             CCCCeEEEEEEeCCCCC
Q psy17207         66 RLPNSYNITWMVSSYTP   82 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~p   82 (123)
                      ..+..+.|.|.+.+..|
T Consensus       145 ~~g~~v~L~C~~~g~~P  161 (242)
T 1hxm_B          145 KLQKAGTYLCLLEKFFP  161 (242)
T ss_dssp             GSSSCEEEEEEEEEESS
T ss_pred             ccCCCceEEEEEeeEEC
Confidence            13678999999876544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.21  E-value=1.4e-06  Score=67.41  Aligned_cols=43  Identities=33%  Similarity=0.349  Sum_probs=36.2

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|+.+...   ++|.|.+++.+|+|.|+|+|.|..|.+.+++.|.+
T Consensus       399 ~~~~~~~~---g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v  441 (452)
T 3zyi_A          399 PRISVLND---GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV  441 (452)
T ss_dssp             SSCEECTT---SCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CCEEECCC---CeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            36655433   47999999999999999999999999999887764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.20  E-value=2.6e-06  Score=61.09  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|....++.|..
T Consensus       240 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v  276 (289)
T 3mjg_X          240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI  276 (289)
T ss_dssp             EEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEE
Confidence            3578999999999999999999999999998766653

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.20  E-value=3.2e-06  Score=62.68  Aligned_cols=72  Identities=21%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEE--EEeccCCCceeecCCCCCCCCeEEEEEEeCC-CCCCcceEEEeEEc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYL--ELSGKPNPAIFRSHPQGRLPNSYNITWMVSS-YTPLEEFKIKYRKI   93 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i--~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s-~~pi~~y~v~yr~~   93 (123)
                      +.|.|.+++..|+|.|+|.+   .|...+.+  .|..+|.+|.+.... ......+.+.|..+. ..+...|.++|++.
T Consensus        60 ~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~~pP~~P~l~c~~-~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~  134 (325)
T 1n26_A           60 RRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVPPEEPQLSCFR-KSPLSNVVCEWGPRSTPSLTTKAVLLVRKF  134 (325)
T ss_dssp             SEEEECSCCGGGCEEEEEES---SSSCSCEEEEEECCCCCCCCCEEEB-SSTTSCEEEEECCSSCCCTTCEEEEEEEEE
T ss_pred             ceEEecccchhhCeEeEEEe---CCEEeeeEEEEeccCCCCCceeEEe-ecCCCcEEEEECCCCCCCCCceEEEEEEEc
Confidence            58999999999999999993   66665554  444577776633211 123568999999743 22447899999875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.18  E-value=2.5e-06  Score=59.52  Aligned_cols=37  Identities=32%  Similarity=0.367  Sum_probs=33.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.++..+|+|.|+|.|.|.+|....++.|..
T Consensus       180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  216 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV  216 (241)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC
T ss_pred             CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEe
Confidence            3568999999999999999999999999999887764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.18  E-value=1.2e-06  Score=63.56  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...|.|.+++.+|+|.|+|.|+|.+|.+..++.|..
T Consensus       263 ~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V  298 (308)
T 4fom_A          263 NTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYI  298 (308)
T ss_dssp             TEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCE
T ss_pred             CeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence            456789999999999999999999999998877654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.17  E-value=1.3e-05  Score=58.53  Aligned_cols=73  Identities=14%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCc-----e--eEEEEEEeccCCCceeecCCC--CCCCCeEEEEEEeCCCCCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMG-----K--HRAYLELSGKPNPAIFRSHPQ--GRLPNSYNITWMVSSYTPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G-----~--~~~~i~l~~~P~p~~~~~~~~--~~~~~~~~L~w~~~s~~pi~~y~   87 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..+     .  ....+.|.+.+.+|.+...+.  ...+..+.|.|.+...++  .|.
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~--~~~  150 (316)
T 3vh8_G           73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE--HFF  150 (316)
T ss_dssp             SSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCS--EEE
T ss_pred             eEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCc--EEE
Confidence            46799999999999999999997432     2  223455555444454442211  125788999999854333  444


Q ss_pred             EEeEE
Q psy17207         88 IKYRK   92 (123)
Q Consensus        88 v~yr~   92 (123)
                       ||+.
T Consensus       151 -w~k~  154 (316)
T 3vh8_G          151 -LHKE  154 (316)
T ss_dssp             -EEET
T ss_pred             -EEEC
Confidence             4443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.17  E-value=2.8e-06  Score=58.14  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             EEEEEEcc-cCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRK-VVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~-v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+|.|.+ ++.+|+|.|+|+|.|..|.....+.+.
T Consensus        43 ~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           43 DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            45899999 999999999999999999966655443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.17  E-value=5.5e-06  Score=60.38  Aligned_cols=82  Identities=23%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             cCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEE-EEcCCceeEEEEEEec--cCCCceeecCCC--CCCC---CeEEEEE
Q psy17207          5 TTERRIME-TRGSRHTLMIRKVVASDFGNYSCE-ATNPMGKHRAYLELSG--KPNPAIFRSHPQ--GRLP---NSYNITW   75 (123)
Q Consensus         5 ~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~-A~N~~G~~~~~i~l~~--~P~p~~~~~~~~--~~~~---~~~~L~w   75 (123)
                      .++|+.+. .....+.|.|.+++.+|+|.|+|. +.|..|.....+.|..  .|..........  ...+   +.+.|.|
T Consensus        78 ~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C  157 (331)
T 3u83_A           78 YRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATC  157 (331)
T ss_dssp             CTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEE
T ss_pred             cCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEE
Confidence            34677664 223456799999999999999997 7787888877666654  332211111110  0122   6799999


Q ss_pred             E-eCCCCCCcceE
Q psy17207         76 M-VSSYTPLEEFK   87 (123)
Q Consensus        76 ~-~~s~~pi~~y~   87 (123)
                      . ..+.++ ..+.
T Consensus       158 ~~~~~~p~-~~i~  169 (331)
T 3u83_A          158 TSANGKPP-SVVS  169 (331)
T ss_dssp             EEEEEBSC-CEEE
T ss_pred             EecCCcCC-ceEE
Confidence            8 555443 3444

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.17  E-value=7.8e-06  Score=57.43  Aligned_cols=76  Identities=12%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCc---eeE--EEEEEec---cCCCceeec-CCCC---CCCCeEEE
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMG---KHR--AYLELSG---KPNPAIFRS-HPQG---RLPNSYNI   73 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~~~--~~i~l~~---~P~p~~~~~-~~~~---~~~~~~~L   73 (123)
                      +|+.+.. ......|.|.+++.+|+|.|+|.+.+..+   ...  ..+.|..   .+.+|.+.. .+..   ..+..+.|
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L  142 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATL  142 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEE
Confidence            6888765 34567899999999999999999983211   111  2344443   233443332 1111   12578999


Q ss_pred             EEEeCCCCC
Q psy17207         74 TWMVSSYTP   82 (123)
Q Consensus        74 ~w~~~s~~p   82 (123)
                      .|.+.+..|
T Consensus       143 ~C~~~g~~P  151 (240)
T 3q5y_A          143 VCLARGFFP  151 (240)
T ss_dssp             EEEEEEEBS
T ss_pred             EEEEeeEEC
Confidence            999877433

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.14  E-value=1.3e-06  Score=60.66  Aligned_cols=70  Identities=11%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEe-ccCCCceeecCCC---CCCCCeEEEEEEeCCC-CCCcceE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELS-GKPNPAIFRSHPQ---GRLPNSYNITWMVSSY-TPLEEFK   87 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~-~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~-~pi~~y~   87 (123)
                      +.|.|.+++.+|.|.|+|.|.|..|..  +..+.+. ....+|.+.....   ...+..+.|.|.+.+. ++...+.
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  144 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVE  144 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEE
Confidence            579999999999999999999999864  3455431 2233443321111   1136789999998774 4423444

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.13  E-value=3.3e-06  Score=58.94  Aligned_cols=37  Identities=27%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             cCCCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          5 TTERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         5 ~d~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .++|+.+..+   .....|+|.+++.+|+|.|.|.+.|..
T Consensus        55 ~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   94 (207)
T 1ypz_E           55 ENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWH   94 (207)
T ss_dssp             EETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBC
T ss_pred             cCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            3578988754   567799999999999999999999874

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.13  E-value=2.1e-06  Score=54.54  Aligned_cols=51  Identities=25%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p   56 (123)
                      ++||.+..  .....+|+|++++.+|+|.|.|.+.+........+.|...|.+
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (115)
T 2or7_A           60 NSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPEL  112 (115)
T ss_dssp             STTEECCSCGGGTBCCEEESSCCGGGCEEEEEEECCTTSCEEEEEEEEEESCC
T ss_pred             CccEEEecCccCCeEEEEEccCCHHHCEEEEEEEECCCceeEEEEEEEEcCCC
Confidence            46777642  2235579999999999999999999876555777777765543

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.13  E-value=1.4e-06  Score=54.08  Aligned_cols=45  Identities=27%  Similarity=0.419  Sum_probs=33.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ++|+.+...  ....+|+|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus        58 ~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l  104 (109)
T 2oyp_A           58 SSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLEL  104 (109)
T ss_dssp             CTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEE
T ss_pred             cceEEEccCccCCcEeEEEccCCChhCeEEEEEEEcCCcccceEEEE
Confidence            467766421  234689999999999999999999987665555444

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.13  E-value=1.3e-06  Score=61.20  Aligned_cols=70  Identities=13%  Similarity=0.047  Sum_probs=45.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEE-eccCCCceeec-CCC--CCCCCeEEEEEEeCC-CCCCcceE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKH--RAYLEL-SGKPNPAIFRS-HPQ--GRLPNSYNITWMVSS-YTPLEEFK   87 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l-~~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s-~~pi~~y~   87 (123)
                      +.|.|.+++.+|.|.|+|.|.|..|..  ...+.+ .....+|.+.. ...  ...+..+.|.|.+.+ +++...+.
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  152 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVE  152 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEE
Confidence            579999999999999999999998764  344432 12233443321 111  123678999999987 44433444

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.13  E-value=2.3e-06  Score=51.99  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus        49 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            45899999999999999999999999765

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.12  E-value=8e-06  Score=57.94  Aligned_cols=77  Identities=16%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-----------eeE----EEEEEe-ccCCCceee-cCC--C
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----------KHR----AYLELS-GKPNPAIFR-SHP--Q   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----------~~~----~~i~l~-~~P~p~~~~-~~~--~   64 (123)
                      .+|+.+..+  .....|+|.+++.+|+|.|.|.+.+..|           ...    ..+.|. ..+.+|.+. ..+  .
T Consensus        72 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~  151 (239)
T 3tv3_H           72 KSRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSK  151 (239)
T ss_dssp             GGGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCC
T ss_pred             cCCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChh
Confidence            368887643  4567899999999999999999987632           111    123343 223334333 111  1


Q ss_pred             CCCCCeEEEEEEeCCCCC
Q psy17207         65 GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        65 ~~~~~~~~L~w~~~s~~p   82 (123)
                      ...+..+.|.|.+.+..|
T Consensus       152 ~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H          152 STSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             C--TTEEEEEEEEEEEBS
T ss_pred             hccCCcEEEEEEEeeEeC
Confidence            124688999999876433

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.12  E-value=1.7e-06  Score=56.42  Aligned_cols=30  Identities=30%  Similarity=0.579  Sum_probs=27.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|.+|.+.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           88 AASTISIDTLVEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECCTTSSS
T ss_pred             cceEEEECCCCcccCEEEEEEEEecCCccc
Confidence            357899999999999999999999999874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.12  E-value=2.8e-06  Score=57.95  Aligned_cols=68  Identities=16%  Similarity=0.088  Sum_probs=41.3

Q ss_pred             EEEcccCCCCCeeEEEEEEcCCceeE---EEEEEeccCCCceee-cCCCCCCCCeEEEEEEe-CCCCCCcceEE
Q psy17207         20 LMIRKVVASDFGNYSCEATNPMGKHR---AYLELSGKPNPAIFR-SHPQGRLPNSYNITWMV-SSYTPLEEFKI   88 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~---~~i~l~~~P~p~~~~-~~~~~~~~~~~~L~w~~-~s~~pi~~y~v   88 (123)
                      |.|.+++..|+|.|+|.|.|..|...   ..+.|...|...... .......+..+.|.|.+ .+.++. .|.|
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v~W  146 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TISW  146 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EEEE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EEEE
Confidence            45567899999999999999999773   234444433221111 10111246788999987 454443 4443

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.12  E-value=3.2e-06  Score=53.27  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+++...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           61 PSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            57998876666789999999999999999999984

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.11  E-value=9.7e-06  Score=58.16  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=29.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+++..+  .....|+|.+++.+|+|.|.|.+.|.
T Consensus        64 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  100 (248)
T 3u2s_H           64 WGRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAG  100 (248)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCC
Confidence            478988643  45778999999999999999999984

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.11  E-value=7.4e-06  Score=58.39  Aligned_cols=76  Identities=12%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCC------ceeEEEEEEec---cCCCceeecC-CCC---CCCCeE
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPM------GKHRAYLELSG---KPNPAIFRSH-PQG---RLPNSY   71 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~------G~~~~~i~l~~---~P~p~~~~~~-~~~---~~~~~~   71 (123)
                      .+|+.+.. ......|.|.+++.+|+|.|.|.+.|..      |.. ..+.|..   .+.+|.+... +..   ..+..+
T Consensus        63 ~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~  141 (252)
T 1oga_E           63 AEGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPG-TRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKA  141 (252)
T ss_dssp             CTTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCC-EEEEEESCGGGCBCCEEEEECCCHHHHHHHSEE
T ss_pred             CCcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCC-EEEEEecccCCCCCCeEEEECCChhhhccCCce
Confidence            46888753 2345689999999999999999999961      222 2344443   2345544321 111   025789


Q ss_pred             EEEEEeCCCCC
Q psy17207         72 NITWMVSSYTP   82 (123)
Q Consensus        72 ~L~w~~~s~~p   82 (123)
                      .|.|.+.+..|
T Consensus       142 ~L~C~~~g~~P  152 (252)
T 1oga_E          142 TLVCLATGFYP  152 (252)
T ss_dssp             EEEEEEEEEBS
T ss_pred             EEEEEEeeEcC
Confidence            99999876533

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.11  E-value=5.5e-06  Score=61.68  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=43.3

Q ss_pred             EEEEEEcccCCCC------CeeEEEEEEcCCceeE-EEEEE--eccCCCceeecCCCCCCCCeEEEEEEeCCCCC
Q psy17207         17 RHTLMIRKVVASD------FGNYSCEATNPMGKHR-AYLEL--SGKPNPAIFRSHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        17 ~~~L~I~~v~~~D------~G~YtC~A~N~~G~~~-~~i~l--~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      .+.|.|.+++..|      +|.|+|.|.|..|... ..+.|  ...|.............+..+.|.|.+.+.++
T Consensus        58 ~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~  132 (388)
T 2v5m_A           58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA  132 (388)
T ss_dssp             TTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTT
T ss_pred             CceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCC
Confidence            3579999999997      9999999999999854 23433  33332221111111125678899999876543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.11  E-value=3.6e-06  Score=62.62  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCCCCC
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      +|+.+..   .+....|.|.+++.+|+|.|+|.|.|..+...  +.|...+.+|.    .....+..+.|.|.+.+.+ .
T Consensus        53 ~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~--l~V~~~~~~~~----~~v~~G~~v~l~C~~~~~p-~  125 (363)
T 1wio_A           53 DRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ--LLVFGLTANSD----THLLQGQSLTLTLESPPGS-S  125 (363)
T ss_dssp             GGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEEEEEE--EEEEEEEESSC----SSEESBSCEEEEEECCTTC-C
T ss_pred             cceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECCCcEE--EEEEeCCCCCc----eEEecCCCEEEEEEcCCCC-C
Confidence            4555432   23456799999999999999999999866433  33333221111    0112577899999987743 3


Q ss_pred             cceEE
Q psy17207         84 EEFKI   88 (123)
Q Consensus        84 ~~y~v   88 (123)
                      ..+.|
T Consensus       126 ~~v~W  130 (363)
T 1wio_A          126 PSVQC  130 (363)
T ss_dssp             CCEEE
T ss_pred             CeEEE
Confidence            34553

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.10  E-value=3.4e-06  Score=53.45  Aligned_cols=37  Identities=32%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             CCCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+..   ......|+|.+++.+|+|.|.|.+.|..|
T Consensus        56 ~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             ETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecCCC
Confidence            57887754   34567899999999999999999999876

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.09  E-value=3.8e-06  Score=52.76  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            47998876667789999999999999999999985

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.09  E-value=5.5e-06  Score=55.88  Aligned_cols=67  Identities=24%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEE---EEEecc------CCCceeecCCC---CCCCCeEEEEEEeCCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY---LELSGK------PNPAIFRSHPQ---GRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~---i~l~~~------P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi   83 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|.....   +.+...      +.+|.+.....   ...+..+.|.|.+.+.++.
T Consensus        65 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  143 (201)
T 3s97_C           65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP  143 (201)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCC
T ss_pred             CCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCC
Confidence            4679999999999999999999988777652   222211      12232221111   1246788999998776544

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.09  E-value=4e-06  Score=59.56  Aligned_cols=40  Identities=25%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      .+|+.+...+....|+|.+++.+|+|.|+|.|.|..+...
T Consensus       195 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~f  234 (253)
T 3uzq_A          195 PARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTF  234 (253)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCB
T ss_pred             CCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEE
Confidence            3688877667788999999999999999999999654433

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.09  E-value=1.8e-05  Score=52.40  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee-E----EEEEEeccCCCcee
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH-R----AYLELSGKPNPAIF   59 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~----~~i~l~~~P~p~~~   59 (123)
                      ..+||.....+....|+|.+++.+|+|.|.|.+.+..+.. .    ..+.|.+.|.++.+
T Consensus        67 ~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~~~~  126 (134)
T 3kg5_A           67 EKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLAQL  126 (134)
T ss_dssp             CTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEECC------
T ss_pred             ECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEecCCCHHHh
Confidence            3579988766778899999999999999999999874311 1    13445555555543

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.09  E-value=1.4e-05  Score=57.08  Aligned_cols=83  Identities=13%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc---------eeE----EEEEEec-cCCCceee-cCC--CCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG---------KHR----AYLELSG-KPNPAIFR-SHP--QGR   66 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G---------~~~----~~i~l~~-~P~p~~~~-~~~--~~~   66 (123)
                      .+|+.+..+  .....|+|.+++.+|+|.|.|.+.+..|         ...    ..+.|.. .+.+|.+. ..+  ...
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~  167 (256)
T 3sob_H           88 KGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKST  167 (256)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC----
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccc
Confidence            378887643  3466799999999999999999998531         111    1344432 22333322 111  112


Q ss_pred             CCCeEEEEEEeCCCCC-CcceEE
Q psy17207         67 LPNSYNITWMVSSYTP-LEEFKI   88 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~p-i~~y~v   88 (123)
                      .+..+.|.|.+.+..| ...+.|
T Consensus       168 ~g~~v~L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          168 SGGTAALGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             -TTEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcEEEEEEEEEEECCCeEEEE
Confidence            5688999999876433 333444

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.09  E-value=3.5e-06  Score=57.44  Aligned_cols=34  Identities=38%  Similarity=0.548  Sum_probs=29.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEE-EEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS   51 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-i~l~   51 (123)
                      +.|.|.+++.+|+|.|+|.|.|.+|..... +.|.
T Consensus       165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~  199 (212)
T 2v9r_A          165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT  199 (212)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CeEEEeeCCHhhCeeEEEEEecccCceecceEEEE
Confidence            489999999999999999999999997653 4444

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.08  E-value=4e-06  Score=52.91  Aligned_cols=35  Identities=31%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        63 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEEccCCEEEEEECCCCcccCEEEEEEEecC
Confidence            47998876667789999999999999999999985

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.08  E-value=4.7e-06  Score=52.30  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=35.0

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|..+..  ...+|.|++++.+|+|.|.|.+.|..|.....+.+.+
T Consensus        60 ~r~~~~~--~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~  103 (110)
T 1ncn_A           60 GRTSFDS--DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMN  103 (110)
T ss_dssp             TSEEEET--TTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             CcEEEEC--CCEEEEEcCCChHHCEEEEEEEEcCCCCceEEEEEEE
Confidence            4666642  2468999999999999999999999888877665543

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.08  E-value=1.2e-06  Score=66.91  Aligned_cols=77  Identities=12%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCceeE--EEEEEec-cCCCc-eeecC--CCCCCCCeEEEEEEe
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSG-KPNPA-IFRSH--PQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~i~l~~-~P~p~-~~~~~--~~~~~~~~~~L~w~~   77 (123)
                      ++|+.+..+  +....|.|.+++.+|+|.|+|.|.|..+...  ..+.|.. .+.+| .+...  .....+..+.|.|.+
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~  143 (434)
T 1igy_B           64 KDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  143 (434)
T ss_dssp             TTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEE
T ss_pred             cccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEE
Confidence            468887643  3456899999999999999999999644332  2344442 22233 33211  111357899999998


Q ss_pred             CCCCC
Q psy17207         78 SSYTP   82 (123)
Q Consensus        78 ~s~~p   82 (123)
                      .+..|
T Consensus       144 ~g~~P  148 (434)
T 1igy_B          144 KGYFP  148 (434)
T ss_dssp             EEEBS
T ss_pred             eeecC
Confidence            76533

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.08  E-value=2.7e-06  Score=63.51  Aligned_cols=72  Identities=18%  Similarity=0.105  Sum_probs=45.4

Q ss_pred             EEEEEEc----ccCCCCCeeEEEEEEcCCceeE-EEEEEe--ccCCCceeecCC-CCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         17 RHTLMIR----KVVASDFGNYSCEATNPMGKHR-AYLELS--GKPNPAIFRSHP-QGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        17 ~~~L~I~----~v~~~D~G~YtC~A~N~~G~~~-~~i~l~--~~P~p~~~~~~~-~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      .+.|.|.    +++.+|+|.|+|.|.|..|... ..+.|.  ..|..+...... ....+..+.|.|.+....|...+.|
T Consensus        72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W  151 (404)
T 3p3y_A           72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW  151 (404)
T ss_dssp             SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEE
T ss_pred             CceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEE
Confidence            4566665    8889999999999999999985 444444  334322211111 1125778899999854444444443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.08  E-value=4.5e-06  Score=56.31  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...|.|.++...|+|.|+|.|.|.+|....++.|..
T Consensus       164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  199 (201)
T 3s97_C          164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV  199 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence            458999999999999999999999999998877754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.08  E-value=3.8e-06  Score=60.95  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             EEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+| +|.|+|.|.|.+|.+..++.|..
T Consensus       276 ~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             EEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEe
Confidence            4589999999999 99999999999999999998875

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.08  E-value=1.2e-05  Score=62.16  Aligned_cols=71  Identities=17%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCCceeecC-CC---CCCCCeEEEEEEeCCCCC-CcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNPAIFRSH-PQ---GRLPNSYNITWMVSSYTP-LEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p~~~~~~-~~---~~~~~~~~L~w~~~s~~p-i~~y~   87 (123)
                      .+.|.|.+++..|.|.|+|.|.|..|.......|.  ....+|.+... ..   ...+..+.|.|.+.+..| ...+.
T Consensus       308 ~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~  385 (475)
T 1iga_A          308 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR  385 (475)
T ss_pred             EEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEE
Confidence            45799999999999999999999999865443342  22334433221 11   124667999999987543 33444

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.08  E-value=2.9e-06  Score=54.79  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC-----CceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP-----MGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~-----~G~~~~~i~l~~   52 (123)
                      +|+.+.. .....|+|.+++.+|+|.|.|.+.|.     +|.+...+.|.+
T Consensus        82 ~R~~~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V  131 (135)
T 1xt5_A           82 GRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV  131 (135)
T ss_dssp             TTEEESC-TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEE
T ss_pred             CcEEEec-CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEE
Confidence            6777643 23468999999999999999999994     566667666654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.07  E-value=1.6e-05  Score=53.75  Aligned_cols=67  Identities=12%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEE-EEec-cCCCceeecC--CCCCCCCeEEEEEEeCCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYL-ELSG-KPNPAIFRSH--PQGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i-~l~~-~P~p~~~~~~--~~~~~~~~~~L~w~~~s~~pi   83 (123)
                      .++|.|.+++.+|+|.|.|.+.|..+...... .+.. .+.++.....  ........+.+.|.+.+.++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p  148 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP  148 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc
Confidence            46799999999999999999999777665532 2222 2222222211  112246678888888776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.07  E-value=3.7e-06  Score=65.13  Aligned_cols=44  Identities=27%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.|+.+...   ++|.|.+++.+|+|.|+|+|.|..|.+..++.|.+
T Consensus       432 ~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  475 (477)
T 2id5_A          432 NGRLTVFPD---GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV  475 (477)
T ss_dssp             ---CEECTT---SCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CceEEeCCC---CEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            345555432   47999999999999999999999999988877654

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.07  E-value=4.5e-06  Score=53.77  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+++...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           61 SSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             CCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            57998876667789999999999999999999985

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.06  E-value=5.4e-06  Score=56.17  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEEeccC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKP   54 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l~~~P   54 (123)
                      ..+.|.|.+++  |+|.|+|.|.|.+|... ..+.|...|
T Consensus       156 ~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V~P  193 (195)
T 2c5d_C          156 PQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLP  193 (195)
T ss_dssp             CCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             CCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEEec
Confidence            46789999997  89999999999999997 577776643

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.06  E-value=3.6e-06  Score=52.97  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           59 PDRFTGSGSATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             CTTEECCBCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            46888765556778999999999999999999985

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.06  E-value=7.1e-06  Score=56.11  Aligned_cols=27  Identities=26%  Similarity=0.238  Sum_probs=24.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       155 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          155 SRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             ceeEEEecccCcccCeEEEEEEEeCCC
Confidence            357999999999999999999999866

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.06  E-value=4.7e-06  Score=53.72  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+++...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        59 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           59 PSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            57998876666789999999999999999999985

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.04  E-value=1.1e-05  Score=59.39  Aligned_cols=73  Identities=15%  Similarity=0.159  Sum_probs=47.5

Q ss_pred             EEEEEEcccCCCCCe-eEEEEEEcCCceeEEEEE--EeccCCCceeec--CCCCCCCCeEEEEEEeCCCCCCcceEEEeE
Q psy17207         17 RHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLE--LSGKPNPAIFRS--HPQGRLPNSYNITWMVSSYTPLEEFKIKYR   91 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~i~--l~~~P~p~~~~~--~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr   91 (123)
                      .+.|.|.+++.+|+| .|+|.|.|..|.......  +...| |..+..  ......+..+.|.|.+.+.++...+. ||+
T Consensus        88 ~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~-p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~-W~k  165 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP-PSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT-WYK  165 (329)
T ss_dssp             TTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCC-CSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEE-EEE
T ss_pred             cceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCC-CcEeccccceEEeCCCcEEEEeccCCCCCCceEE-EEE
Confidence            358999999999999 999999999987665442  22222 212211  11223477899999887766233444 344

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.04  E-value=7.4e-06  Score=57.79  Aligned_cols=75  Identities=19%  Similarity=0.270  Sum_probs=47.3

Q ss_pred             cCCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcC-------CceeEEEEEEec---------cCCCceeecCCCC-
Q psy17207          5 TTERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNP-------MGKHRAYLELSG---------KPNPAIFRSHPQG-   65 (123)
Q Consensus         5 ~d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~-------~G~~~~~i~l~~---------~P~p~~~~~~~~~-   65 (123)
                      ..+|+++..+.  ....|+|.+++.+|+|.|.|.+.|.       +|.. ..+.|..         .|.+.++.  +.. 
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~L~V~~~~~~l~~~~~p~~~v~~--p~~~  140 (230)
T 1ypz_F           64 EYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEG-TKLIVIPSDKRLDADISPKPTIFL--PSVA  140 (230)
T ss_dssp             SSSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSC-EEEEEECCCTTCCSCCSCCCCEEC--CCHH
T ss_pred             cCCeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCC-EEEEEecccccCcccCCCCceEEC--CCch
Confidence            35788876432  5678999999999999999999985       1222 2344441         13333322  111 


Q ss_pred             --CCCCeEEEEEEeCCCCC
Q psy17207         66 --RLPNSYNITWMVSSYTP   82 (123)
Q Consensus        66 --~~~~~~~L~w~~~s~~p   82 (123)
                        ..+..+.|.|.+.+..|
T Consensus       141 ~v~~g~~~~L~C~~~g~~P  159 (230)
T 1ypz_F          141 ETNLHKTGTYLCLLEAFFP  159 (230)
T ss_dssp             HHHHHSCEEEEEEEEEESS
T ss_pred             hhccCCcceEEEEEeeecC
Confidence              02467899999876533

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.03  E-value=5.2e-06  Score=57.20  Aligned_cols=42  Identities=29%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE-EEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-i~l~   51 (123)
                      +.|+.+.    .+.|.|.+++.+|+|.|+|.|.|.+|..... +.|.
T Consensus       155 ~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~  197 (212)
T 2yd1_A          155 NPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLY  197 (212)
T ss_dssp             STTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEE
Confidence            3566543    2389999999999999999999999999753 4444

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.03  E-value=7.6e-06  Score=57.59  Aligned_cols=82  Identities=16%  Similarity=0.135  Sum_probs=49.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-------eeE----EEEEEec-cCCCceee--c-CCCCCCCC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-------KHR----AYLELSG-KPNPAIFR--S-HPQGRLPN   69 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-------~~~----~~i~l~~-~P~p~~~~--~-~~~~~~~~   69 (123)
                      +|+.+..+  .....|+|.+++.+|+|.|.|.+.+..+       ...    ..+.|.. .+.+|.+.  . ......+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~  145 (226)
T 3mlr_H           66 GQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGG  145 (226)
T ss_dssp             TTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSS
T ss_pred             CcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCC
Confidence            68887643  3567899999999999999999987531       011    1233332 22233322  1 11122567


Q ss_pred             eEEEEEEeCCCCC-CcceEE
Q psy17207         70 SYNITWMVSSYTP-LEEFKI   88 (123)
Q Consensus        70 ~~~L~w~~~s~~p-i~~y~v   88 (123)
                      .+.|.|.+.+..| ...+.|
T Consensus       146 ~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H          146 TAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE
T ss_pred             CEEEEEEEEEEECCCeEEEE
Confidence            8999999876434 334444

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.03  E-value=4.9e-06  Score=61.15  Aligned_cols=66  Identities=11%  Similarity=0.113  Sum_probs=43.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec---cCCCceee---cCCCCCCCCeEEEEEEeCCCCC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG---KPNPAIFR---SHPQGRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~---~P~p~~~~---~~~~~~~~~~~~L~w~~~s~~p   82 (123)
                      .+.|.|.+++.+|.|.|+|.|.|..+.......|..   ...+|.+.   .......+..+.|.|.+.+..|
T Consensus       177 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p  248 (323)
T 2wqr_A          177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMP  248 (323)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBS
T ss_pred             EEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeC
Confidence            458999999999999999999999755433443321   22233322   1111123789999999977433

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.03  E-value=6.7e-06  Score=55.41  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=32.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..|....++.|..
T Consensus       142 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V  177 (184)
T 2ny1_B          142 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  177 (184)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEE
Confidence            458999999999999999999999999998776654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.02  E-value=4.8e-06  Score=56.43  Aligned_cols=35  Identities=6%  Similarity=0.018  Sum_probs=30.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|.|.++...|.|.|+|+|+|..|.....+.+.
T Consensus       174 ~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~  208 (218)
T 4frw_A          174 TSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHI  208 (218)
T ss_dssp             EEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             EEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEE
Confidence            45799999999999999999999999887665443

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=98.02  E-value=2.2e-05  Score=61.12  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=51.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceee-cC--CC-CCCCC-eEEEEEEeCCCCCC--cceEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFR-SH--PQ-GRLPN-SYNITWMVSSYTPL--EEFKI   88 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~-~~--~~-~~~~~-~~~L~w~~~s~~pi--~~y~v   88 (123)
                      ...+|+|.+++.+|.|.|+|.+.|..|..+..+.|...- +|.+. ..  .. ...+. .+.|.|.+.+..|.  ..+.|
T Consensus       252 g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~-pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW  330 (401)
T 3f8u_B          252 GNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK-PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW  330 (401)
T ss_dssp             EEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred             CcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeecc-CCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence            367899999999999999999999999888777665432 22222 11  11 11233 68899998876554  45555


Q ss_pred             EeEE
Q psy17207         89 KYRK   92 (123)
Q Consensus        89 ~yr~   92 (123)
                      .+|.
T Consensus       331 ~~rd  334 (401)
T 3f8u_B          331 ELRG  334 (401)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            4453

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.02  E-value=3.7e-06  Score=61.74  Aligned_cols=60  Identities=18%  Similarity=0.127  Sum_probs=42.7

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCce----eecCCCCCCCCeEEEEEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAI----FRSHPQGRLPNSYNITWMV   77 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~----~~~~~~~~~~~~~~L~w~~   77 (123)
                      +.|.|.+++..|+|.|+|.|.|..|.....+.|.....++.    .........+..+.|.|.+
T Consensus        81 ~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~  144 (339)
T 3o4o_C           81 GALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPD  144 (339)
T ss_dssp             TEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCS
T ss_pred             CeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecC
Confidence            48999999999999999999999998888777664322211    1000111247789999983

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.02  E-value=2.1e-06  Score=58.44  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeE--EEEEEec
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSG   52 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~i~l~~   52 (123)
                      ...+.|.|.++..+|+|.|+|.|.|.+|...  ..+.|..
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEE
T ss_pred             CCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEE
Confidence            3456899999999999999999999999983  3455543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.02  E-value=4.6e-05  Score=57.96  Aligned_cols=69  Identities=17%  Similarity=0.177  Sum_probs=46.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCC---CCCCCeEEEEEEeCCCCCCcce
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ---GRLPNSYNITWMVSSYTPLEEF   86 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi~~y   86 (123)
                      ....|.|.+++. |.| |+|.|.|..|.....+.|...-.|..+...+.   ...+..+.|.|.+.+.+|...+
T Consensus        48 ~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~  119 (450)
T 1z7z_I           48 NRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL  119 (450)
T ss_dssp             TEEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGE
T ss_pred             CceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCc
Confidence            455899999987 999 99999988777776555443212222211111   2357899999999887776544

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.02  E-value=2.4e-05  Score=50.62  Aligned_cols=64  Identities=14%  Similarity=0.356  Sum_probs=43.3

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEe--CCCCCCcceEEEeEEcCCCCCCc-eeeeeccccccccceeeeeeec
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMV--SSYTPLEEFKIKYRKIPGNEPSP-MSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~--~s~~pi~~y~v~yr~~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..|+||.+....  ...+++.|.|.+  ++++||+.|.|+||....  ..| ......   +..+.+.|.+|.+
T Consensus         7 ~~P~pP~~~~~~--~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~--~~w~~~~~~~---~~~~~~~l~~L~p   73 (114)
T 2kbg_A            7 REPSPPSIHGQP--SSGKSFKLSITKQDDGGAPILEYIVKYRSKDK--EDQWLEKKVQ---GNKDHIILEHLQW   73 (114)
T ss_dssp             CCCCSCCEECCB--CSTTCEEEEECCCCCSSSCCSEEEEEEEESSC--CSCCEEEEEE---TTTCCEEECCCCT
T ss_pred             CCccCCcccccc--cCCCEEEEEEECCCCCCCcccEEEEEEEeCCC--CCcEEeEEcC---CCcCEEEEcCCCC
Confidence            468888776533  468999999997  378999999999999732  344 333322   2345556665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.01  E-value=3.1e-06  Score=63.09  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             CCEEEEEEcccCCCCCe-eEEEEEEcCCceeEEEEEEeccCCCce-eecCCCCCCCCeEEEEEEeCCCCCCcceEE
Q psy17207         15 GSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELSGKPNPAI-FRSHPQGRLPNSYNITWMVSSYTPLEEFKI   88 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~i~l~~~P~p~~-~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v   88 (123)
                      ...+.|.|.+++..|+| .|+|.|.|..|.....+.|.... +|. +...+  ..+..+.|.|.+.+.++. .+.|
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~-~P~i~~~~~--~~g~~v~l~C~~~g~P~p-~i~W  280 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF-PASVQLHTA--VEMHHWCIPFSVDGQPAP-SLRW  280 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE-EEEEEECCC--EESSSEEEEEEEEEESCC-EEEE
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC-CCeeeeccC--ccCceEEEEEEeeecCCC-cEEE
Confidence            35778999999999999 99999999999998887766422 222 22211  246789999999877444 4554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.00  E-value=3.2e-06  Score=64.62  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=46.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEe-ccCCCceeecCCC---CCCCCeEEEEEEeCCC-CCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKH--RAYLELS-GKPNPAIFRSHPQ---GRLPNSYNITWMVSSY-TPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~-~~P~p~~~~~~~~---~~~~~~~~L~w~~~s~-~pi~~y~   87 (123)
                      .+.|.|.+++.+|.|.|+|.|.|..|..  ...+.+. ..+.+|.+.....   ......+.|.|.+.+. ++...+.
T Consensus       304 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~  381 (444)
T 1igt_B          304 VSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVE  381 (444)
T ss_dssp             EEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEE
Confidence            4589999999999999999999999987  4444331 2334444332111   1234459999999774 4333444

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.00  E-value=5.3e-06  Score=57.77  Aligned_cols=39  Identities=13%  Similarity=-0.039  Sum_probs=28.0

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+....+.+.+++.+|.|.|+|+|+|.+|..+.++.|..
T Consensus       173 ~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          173 VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             TSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred             CCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence            344455667778899999999999999999999887764

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=97.99  E-value=5.8e-06  Score=58.89  Aligned_cols=72  Identities=7%  Similarity=0.053  Sum_probs=44.7

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc---eeE-----EEEEEec---cCCCceeecCCCCC----CCCeEE
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG---KHR-----AYLELSG---KPNPAIFRSHPQGR----LPNSYN   72 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G---~~~-----~~i~l~~---~P~p~~~~~~~~~~----~~~~~~   72 (123)
                      |+.+...+... |.|.+++.+|+|.|+|.+.|..|   ...     ..+.|..   .+.+|.+.......    .+..+.
T Consensus        65 R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~  143 (253)
T 3to4_D           65 DYLATRVTDTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (253)
T ss_dssp             EEEEECCSSSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEE
T ss_pred             cEEEEeCCCCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceE
Confidence            88776544444 99999999999999999997754   111     1334432   12333332111110    236899


Q ss_pred             EEEEeCCC
Q psy17207         73 ITWMVSSY   80 (123)
Q Consensus        73 L~w~~~s~   80 (123)
                      |.|.+.+.
T Consensus       144 L~C~~~g~  151 (253)
T 3to4_D          144 LVCLATGF  151 (253)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEceE
Confidence            99998774

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=97.99  E-value=7.6e-06  Score=51.91  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        65 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           65 PDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEeecCCEEEEEECCCCcccCEEEEEEEeeC
Confidence            47998876666789999999999999999999985

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.99  E-value=6.3e-06  Score=57.65  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEc---CCceeEEEEEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATN---PMGKHRAYLELS   51 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N---~~G~~~~~i~l~   51 (123)
                      +.|.|.+++.+|+|.|+|.|.|   .+|....++.|.
T Consensus       213 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             TEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             cEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence            5899999999999999999999   666666666654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.99  E-value=3.1e-06  Score=53.56  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             ccCCCCCeeEEEEEEcCCceeEE
Q psy17207         24 KVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +++.+|+|.|+|.|.|.+|.+.+
T Consensus        78 ~v~~~D~G~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           78 RKSRPDEGVYVCVARNYLGEAVS  100 (117)
T ss_dssp             TTBCSSCEEEEEEEEETTEEEEC
T ss_pred             CCCcCcCEEEEEEEEeCccceEe
Confidence            66899999999999999999986

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=97.99  E-value=1.8e-05  Score=55.67  Aligned_cols=74  Identities=15%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC---------CceeEEEEEEecc---CCCceeecCCCCCCCCeE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP---------MGKHRAYLELSGK---PNPAIFRSHPQGRLPNSY   71 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~---------~G~~~~~i~l~~~---P~p~~~~~~~~~~~~~~~   71 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.         +|... .+.|...   +.|.++....   ....+
T Consensus        56 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~g~gt-~L~V~~~~~~~~P~V~~~~~---~~~~v  131 (206)
T 1kgc_D           56 NRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGT-ILTVHPNIQNPDPAVYQLRD---SKSSD  131 (206)
T ss_dssp             CSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCCSTTCCCCCCCCCCE-EEEEECCCSSCCCEEEECCC---CTTCC
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecccCCCcccceECCCE-EEEEeCCCCCCCCeEEeecC---CCCCe
Confidence            57888863  345678999999999999999999873         33322 4445432   2233333211   12377


Q ss_pred             EEEEEeCCCCCC
Q psy17207         72 NITWMVSSYTPL   83 (123)
Q Consensus        72 ~L~w~~~s~~pi   83 (123)
                      .|.|.+.+..|-
T Consensus       132 ~L~C~~~g~~P~  143 (206)
T 1kgc_D          132 KSVCLFTDFDSQ  143 (206)
T ss_dssp             CEEEEEESCCTT
T ss_pred             EEEEEeeceecc
Confidence            899998765443

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=97.99  E-value=1.1e-05  Score=51.66  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEE-EcCCceeEEEEEEec
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEA-TNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A-~N~~G~~~~~i~l~~   52 (123)
                      .+|+.+..   ...|+|++++.+|+|.|+|.+ .+..|.....+.|.+
T Consensus        62 ~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  106 (117)
T 3q0h_A           62 KDRVAPGP---GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV  106 (117)
T ss_dssp             TTTEEECS---TTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEE
T ss_pred             cCcEEeCC---ceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEE
Confidence            46777632   458999999999999999985 456788877666654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=97.98  E-value=1e-05  Score=55.76  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.2

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +....|.|.+++.+|.|.|+|.|.|.+|....++.|..
T Consensus       167 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  204 (222)
T 4i0k_A          167 GLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTI  204 (222)
T ss_dssp             SCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEE
Confidence            34456899999999999999999999999999877765

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.98  E-value=7.1e-06  Score=58.28  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|....
T Consensus       200 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~  237 (257)
T 3gkz_A          200 PARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPF  237 (257)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSC
T ss_pred             CCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCce
Confidence            47888877777889999999999999999999986543

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=97.97  E-value=3.4e-05  Score=50.03  Aligned_cols=51  Identities=14%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p   56 (123)
                      .+|+.+..  ......|+|.+++.+|+|.|.|............++|.+.|.|
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~  113 (124)
T 2nms_A           61 RDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAP  113 (124)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             CCCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCC
Confidence            46888763  2456789999999999999999998775444556677665443

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=97.97  E-value=8.4e-06  Score=51.29  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+++.  ..+....|+|++++.+|+|.|.|.+.|.
T Consensus        58 ~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   94 (109)
T 1pew_A           58 PDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   94 (109)
T ss_dssp             CTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            4799886  4456778999999999999999999985

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=97.97  E-value=9.9e-06  Score=51.19  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+++...+....|+|++++.+|+|.|.|.+.|.
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           64 DSRFSMTVNDQKFDLNIIGTREDDGGEYFCGEVEG   98 (111)
T ss_dssp             CTTEEEEESSSBEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEcCCeEEEEECCCChhHCEEEEEEEccC
Confidence            57998876666779999999999999999999985

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.97  E-value=1.5e-05  Score=56.05  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+...+...+|+|.+++.+|+|.|+|.|.|..+
T Consensus       193 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~  229 (247)
T 2ghw_B          193 PDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWP  229 (247)
T ss_dssp             CTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred             CCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCC
Confidence            5788887667788999999999999999999999643

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=97.96  E-value=2.3e-06  Score=55.78  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=35.4

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPN   55 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~   55 (123)
                      .+|+.+.  ..+....|+|.+++.+|+|.|.|.+.+..+.....+.|...|.
T Consensus        65 ~~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~~~~~~~t~l~v~~~  116 (126)
T 2h32_A           65 PPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSSEKEEREREWEEEM  116 (126)
T ss_dssp             CTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSCCCCCCTTCC-----
T ss_pred             CCCEEEEEeCCCCeEEEEECCCChhHCEEEEEEEEcCCCCcceeEEEeeccC
Confidence            4699886  3455778999999999999999999998776554334444333

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.96  E-value=1.2e-05  Score=56.27  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+.  ..+....|+|.+++.+|+|.|+|.|.|..
T Consensus       185 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          185 DGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             ETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            5788775  34557899999999999999999999984

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.96  E-value=8.4e-06  Score=51.53  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        62 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           62 PDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCcEEEEcCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            47898876666788999999999999999999885

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=97.95  E-value=1.3e-05  Score=57.48  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=45.3

Q ss_pred             CEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCce----e--EEEEEEec---cCCCceee-cCCCC---CCCCeEEE
Q psy17207          8 RRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGK----H--RAYLELSG---KPNPAIFR-SHPQG---RLPNSYNI   73 (123)
Q Consensus         8 R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~----~--~~~i~l~~---~P~p~~~~-~~~~~---~~~~~~~L   73 (123)
                      |+.+.. ......|.|.+++.+|+|.|.|.+.|..+.    .  ...+.|..   .+.+|.+. ..+..   ..+..+.|
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  169 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  169 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence            777653 345678999999999999999999974321    1  12344443   22233322 11111   12678999


Q ss_pred             EEEeCCC
Q psy17207         74 TWMVSSY   80 (123)
Q Consensus        74 ~w~~~s~   80 (123)
                      .|.+.+.
T Consensus       170 ~C~~~g~  176 (270)
T 3qib_D          170 VCLATGF  176 (270)
T ss_dssp             EEEEEEE
T ss_pred             EEEecce
Confidence            9998763

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=97.94  E-value=2.7e-06  Score=58.23  Aligned_cols=29  Identities=14%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      ..+.|.|.++..+|+|.|+|+|.|.+|..
T Consensus       151 ~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          151 TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            45679999999999999999999999987

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.93  E-value=1.2e-05  Score=57.06  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|..+..
T Consensus       196 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~  234 (256)
T 3umt_A          196 PKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPT  234 (256)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCE
T ss_pred             CCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcE
Confidence            478888777778899999999999999999999965443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.92  E-value=1.6e-05  Score=54.07  Aligned_cols=31  Identities=13%  Similarity=0.070  Sum_probs=27.2

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i   48 (123)
                      +.|.|.++..+|.|.|+|+|.|..|....+.
T Consensus       181 s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~  211 (225)
T 4fmk_A          181 SRYSLVPVGRADGVKVTCRVEHESFEEPILL  211 (225)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred             EEEEEeeCCHHHCCEEEEEEEcCCCCeEEEE
Confidence            5799999999999999999999988775543

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.92  E-value=1.2e-05  Score=50.84  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+...+....|+|.+++.+|+|.|.|.+.|.
T Consensus        64 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           64 PDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTH   98 (113)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CCCEEEEccCCEEEEEECCCChHHCEEEEEEEecC
Confidence            47888876666788999999999999999999875

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=5.4e-06  Score=50.76  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=26.0

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus        55 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~   85 (96)
T 2ens_A           55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQE   85 (96)
T ss_dssp             CCSEEEEESCCTTTCEEEECEECCSSCCCEE
T ss_pred             CCCEEEECCCCcccCEEEEEEEEeCCCCcEE
Confidence            3468999999999999999999997665443

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=97.92  E-value=0.00019  Score=53.04  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             EEEEEEcccC-CCCCeeEEEEEEcCCceeEE---EEEEe--ccCCCceeecCCC-CCCCCeEEEEEEeCC----CCCCcc
Q psy17207         17 RHTLMIRKVV-ASDFGNYSCEATNPMGKHRA---YLELS--GKPNPAIFRSHPQ-GRLPNSYNITWMVSS----YTPLEE   85 (123)
Q Consensus        17 ~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~---~i~l~--~~P~p~~~~~~~~-~~~~~~~~L~w~~~s----~~pi~~   85 (123)
                      ...+.|.... ....-.+.|.|.|.+|....   .+.+.  ..|.||....... .....++.|+|.++.    ..++..
T Consensus       154 ~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~  233 (325)
T 1n26_A          154 KFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR  233 (325)
T ss_dssp             EEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEE
T ss_pred             CEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEE
Confidence            3456777654 23445568999999998753   22222  3577775443211 113468999999753    356799


Q ss_pred             eEEEeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         86 FKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        86 y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      |.|+||...  ...|..+...   ...+.+.+..|.
T Consensus       234 Y~V~yr~~~--~~~W~~~~~~---~~~~~~~l~~L~  264 (325)
T 1n26_A          234 FELRYRAER--SKTFTTWMVK---DLQHHCVIHDAW  264 (325)
T ss_dssp             EEEEEEETT--CSCCEEEECG---GGCSEEEESSCC
T ss_pred             EEEEEEeCC--CCCCEEEccc---CCceEEEEeCCC
Confidence            999999874  3678876542   223445555443

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=97.90  E-value=2.2e-05  Score=54.91  Aligned_cols=73  Identities=19%  Similarity=0.336  Sum_probs=46.9

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC--------CceeEEEEEEecc---CCCceeecCCCCCCCCeEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP--------MGKHRAYLELSGK---PNPAIFRSHPQGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~--------~G~~~~~i~l~~~---P~p~~~~~~~~~~~~~~~~   72 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.        +|.. ..+.|...   +.|.++.....   ...+.
T Consensus        58 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~g~g-t~L~V~~~~~~~~P~V~~~~~~---~~~~~  133 (203)
T 2bnu_A           58 SGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRG-TSLIVHPYIQNPDPAVYQLRRS---KSSDK  133 (203)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEECSSSTTCCEECCC-EEEEEECCCSSCCCEEEEECCS---SSSSC
T ss_pred             CCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEcCcCcceeeeeCCC-EEEEEeCCCCCCCCeEEecCCC---CCCcE
Confidence            47888763  345678999999999999999999874        1221 24444432   22333332221   23678


Q ss_pred             EEEEeCCCCC
Q psy17207         73 ITWMVSSYTP   82 (123)
Q Consensus        73 L~w~~~s~~p   82 (123)
                      |.|.+.+..|
T Consensus       134 L~C~~~g~~P  143 (203)
T 2bnu_A          134 SVCLFTDFDS  143 (203)
T ss_dssp             EEEEEESCCT
T ss_pred             EEEEcccccc
Confidence            9999877433

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.90  E-value=1.4e-05  Score=51.75  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .+|+.+........|+|++++.+|+|.|.|.+.|...
T Consensus        63 ~~r~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~   99 (126)
T 4ffy_L           63 PARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDP   99 (126)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            4788887666788999999999999999999998643

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.89  E-value=1.6e-06  Score=70.06  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=0.0

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--ccCCC
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP   56 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~P~p   56 (123)
                      |..+.|+.+..  ..+.|.|.++..+|+|.|+|.|.|.+|.+..++.|.  ++|+.
T Consensus       707 l~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  760 (772)
T 3v2a_R          707 LVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK  760 (772)
T ss_dssp             --------------------------------------------------------
T ss_pred             CcCCCCeEEcC--CCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCc
Confidence            44455655542  357899999999999999999999999999876665  45543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.89  E-value=1.6e-05  Score=54.18  Aligned_cols=39  Identities=15%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+....|.|.++...|.|.|+|.|.|.+|.....+.|..
T Consensus       153 ~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          153 EGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             TSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            344567889999999999999999999999999887764

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.89  E-value=2.4e-05  Score=57.98  Aligned_cols=28  Identities=7%  Similarity=0.250  Sum_probs=24.4

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.|+|.+++..| |.|+|.|.|..|....
T Consensus       182 s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~  209 (344)
T 1za6_B          182 SVVTVPSSSLGT-QTYICNVNHKPSNTKV  209 (344)
T ss_dssp             EEEEEETTHHHH-BCEEEEEEEGGGTEEE
T ss_pred             EEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            489999998888 9999999999997543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.89  E-value=1.2e-05  Score=57.29  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|..
T Consensus       197 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          197 PSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            478887665667899999999999999999999975

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=97.88  E-value=1.8e-05  Score=50.97  Aligned_cols=46  Identities=26%  Similarity=0.452  Sum_probs=34.6

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEc-CCceeEEEEEEec
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATN-PMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~~i~l~~   52 (123)
                      +|+.+..   .....+|+|.+++.+|+|.|.|.+.+ ..|...+.+.|.+
T Consensus        66 ~R~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~V  115 (123)
T 4gjt_B           66 GRVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRV  115 (123)
T ss_dssp             TTEECCCSSCCTTBCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC
T ss_pred             eEEEEecCCCcCCEEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEE
Confidence            4666532   22346799999999999999997665 6788887777764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=97.88  E-value=8.1e-06  Score=56.74  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=27.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCC-ceeEEE--EEEeccCCCc
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPM-GKHRAY--LELSGKPNPA   57 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~~--i~l~~~P~p~   57 (123)
                      ...|.|.+++.+|+|.|+|.|.|.. |.....  +.|.+.|.+|
T Consensus       136 ~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P  179 (204)
T 3sgj_C          136 NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS  179 (204)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             CceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence            4579999999999999999999954 443333  4455555444

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.88  E-value=1.6e-05  Score=53.37  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=28.8

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE-E--EEEEeccC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR-A--YLELSGKP   54 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~--~i~l~~~P   54 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|... .  .+.|.+.|
T Consensus       133 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          133 NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             CCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            56899999999999999999999755433 2  34444444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=97.87  E-value=1.4e-05  Score=53.74  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .+.|+.+...   +.|.|.+++.+|+|.|+|.|.|..|....
T Consensus       145 ~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  183 (191)
T 1epf_A          145 KDVRFIVLSN---NYLQIRGIKKTDEGTYRCEGRILARGEIN  183 (191)
T ss_dssp             CCTTEEECTT---SCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             CCceEEEecC---CeEEECCCChhhCEEEEEEEEEecceeEE
Confidence            3456666533   37999999999999999999999965544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.87  E-value=2.2e-05  Score=56.22  Aligned_cols=37  Identities=30%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|..+
T Consensus       184 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  220 (256)
T 1nqb_A          184 PDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP  220 (256)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             CCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCc
Confidence            4688877666788999999999999999999999643

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.87  E-value=2.2e-05  Score=49.90  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+++...+....|+|++++.+|+|.|.|.+.+..
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~   99 (115)
T 2otu_A           64 PDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTI   99 (115)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEECC
T ss_pred             CCCEEEEccCCEEEEEECCCChhHCEEEEEEEecCC
Confidence            368988766667899999999999999999998753

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=97.86  E-value=2.1e-05  Score=50.28  Aligned_cols=36  Identities=19%  Similarity=0.145  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+.+...+....|+|++++.+|+|.|.|.+.+..
T Consensus        61 ~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   96 (120)
T 1oaq_L           61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWYSN   96 (120)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             CCceEEecCCCeEEEEECCCChhhCeEEEEEEccCC
Confidence            479988766667899999999999999999999864

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=97.86  E-value=2.2e-05  Score=49.66  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=29.4

Q ss_pred             cCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         5 ~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .++|+.+..  ......|+|.+++.+|+|.|.|.+.|.
T Consensus        51 ~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   88 (111)
T 2ywz_A           51 IGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYS   88 (111)
T ss_dssp             SBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            457887642  245778999999999999999999983

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=97.86  E-value=1.3e-05  Score=57.13  Aligned_cols=41  Identities=12%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .+|+.+.. ......|+|.+++.+|+|.|+|.|.|..|....
T Consensus       197 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~f  238 (256)
T 3tf7_C          197 PDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYF  238 (256)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEE
T ss_pred             CCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEE
Confidence            46776653 345668999999999999999999999886654

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=97.85  E-value=2.1e-05  Score=49.88  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..  ......|+|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeCC
Confidence            58998864  455678999999999999999999984

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=97.85  E-value=1e-05  Score=52.22  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce-eEEEEEEe
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK-HRAYLELS   51 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~~i~l~   51 (123)
                      +|+.+.  ...++|+|.+++.+|+|.|+|...|..+. ....+.|.
T Consensus        64 ~R~~l~--~~~~sL~I~nv~~~DsG~Y~c~v~~~~~~~~~~~~~L~  107 (121)
T 2edo_A           64 GRVRLD--PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ  107 (121)
T ss_dssp             TTCEEC--TTTCCEEESSCCGGGCSEEEEEEEETTTEEEECCEECE
T ss_pred             CcEEEe--CCCceEEEeCCCHHHCeEEEEEEEcCCCcEEEEEEEEE
Confidence            466553  23458999999999999999999987653 33444443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.84  E-value=2.5e-05  Score=56.34  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+..+  .....|.|.+++.+|+|.|+|.|.|..
T Consensus       199 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          199 KGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            468887653  456689999999999999999999983

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.84  E-value=0.00011  Score=57.86  Aligned_cols=77  Identities=16%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc-----------e----eEEEEEEec-cCCCceee-cCCC--
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG-----------K----HRAYLELSG-KPNPAIFR-SHPQ--   64 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G-----------~----~~~~i~l~~-~P~p~~~~-~~~~--   64 (123)
                      ++|+.+..+  +....|.|++++.+|+|.|.|.+.+..|           .    ....+.|.. .+.+|.+. ..+.  
T Consensus        66 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~  145 (512)
T 1zvo_C           66 RGRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCR  145 (512)
T ss_pred             CCceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcc
Confidence            478888643  3467999999999999999999998753           1    112344443 22334322 1111  


Q ss_pred             -CCCCCeEEEEEEeCCCCC
Q psy17207         65 -GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        65 -~~~~~~~~L~w~~~s~~p   82 (123)
                       ......+.|.|.+.+..|
T Consensus       146 ~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C          146 HPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             cccCCCeEEEEEEEEeeec
Confidence             123478999999977644

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=97.84  E-value=1.5e-05  Score=54.42  Aligned_cols=27  Identities=15%  Similarity=0.333  Sum_probs=24.7

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ..+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       153 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          153 HQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             cceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            457899999999999999999999876

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=97.83  E-value=1.1e-05  Score=50.62  Aligned_cols=43  Identities=21%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|+.+..  ....|+|.+++.+|+|.|.|.+.+.. .....+.|..
T Consensus        64 ~R~~~~~--~~~sL~I~~v~~~DsG~Y~C~v~~~~-~~~~~~~L~V  106 (110)
T 2ptt_A           64 GRVYLEE--NNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEV  106 (110)
T ss_dssp             TTEEECT--TTCCEEESSCCGGGCEEEEEEEESSS-BCCEEEEEEE
T ss_pred             CcEEEeC--CCccEEECCCCcccCeEEEEEEEcCC-CcEEEEEEEE
Confidence            5777742  45689999999999999999998875 3334555543

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.83  E-value=2.6e-05  Score=48.95  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             cCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         5 ~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .++|+.+..  ......|+|.+++.+|+|.|.|.+.|
T Consensus        51 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           51 IGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             CBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            457887642  24577899999999999999999998

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=97.82  E-value=1.9e-05  Score=55.80  Aligned_cols=65  Identities=8%  Similarity=0.114  Sum_probs=42.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc---CCCceee-cCCC--CCCCCeEEEEEEeCCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK---PNPAIFR-SHPQ--GRLPNSYNITWMVSSYTP   82 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~---P~p~~~~-~~~~--~~~~~~~~L~w~~~s~~p   82 (123)
                      +.|.|.+++.+|.|.|+|.|.|..+.......|...   ..+|.+. ..+.  ......+.|.|.+.+..|
T Consensus        77 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P  147 (231)
T 2w59_A           77 SAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRP  147 (231)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             EEEEecchhccCCCEEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccC
Confidence            579999999999999999999998765555545321   1233322 1111  112356899999987543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=97.82  E-value=1.4e-05  Score=52.90  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=26.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus       132 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  161 (170)
T 3ry4_A          132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFS  161 (170)
T ss_dssp             SCCEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCeEEEEeccccCCEEEEEEEEeCcCccc
Confidence            356899999999999999999999999743

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=97.82  E-value=0.00018  Score=52.35  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=64.6

Q ss_pred             EEEEEccc-CCCCCeeEEEEEEcCCceeEE-EEEEe----ccCCCceeecCC-CCCCCCeEEEEEEeCC--CCCCcceEE
Q psy17207         18 HTLMIRKV-VASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSHP-QGRLPNSYNITWMVSS--YTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~-~i~l~----~~P~p~~~~~~~-~~~~~~~~~L~w~~~s--~~pi~~y~v   88 (123)
                      ..++|.++ .....=.+.|.|.|.+|.... .+.+.    .+|.||...... .....+++.|.|.++.  +.++..|.|
T Consensus       158 ~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  237 (303)
T 1i1r_A          158 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  237 (303)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEE
T ss_pred             eEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEE
Confidence            45677777 444433456999999999763 23332    367777654322 2235689999999753  457999999


Q ss_pred             EeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         89 KYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        89 ~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      +||...  ...|..+...-.....+.+.+..|.
T Consensus       238 ~y~~~~--~~~w~~~~~~~~~~~~~~~~l~~L~  268 (303)
T 1i1r_A          238 QYRTKD--ASTWSQIPPEDTASTRSSFTVQDLK  268 (303)
T ss_dssp             EEEETT--CSSCEECCGGGGCSCCSEEEECSCC
T ss_pred             EEEeCC--CCCceEEccccCCCceeEEEeCCCC
Confidence            999975  3678766543223334455555554

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=97.82  E-value=9.7e-05  Score=46.69  Aligned_cols=49  Identities=18%  Similarity=0.313  Sum_probs=36.7

Q ss_pred             CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEEeccC
Q psy17207          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELSGKP   54 (123)
Q Consensus         6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l~~~P   54 (123)
                      .+|+++. .....-.|+|.+++.+|+|.|.|......+.+. ..+.|.+.|
T Consensus        55 ~~R~s~~~~~~~~~~L~I~~l~~~Dsg~Y~C~~~~~~~~d~~~~v~L~V~p  105 (106)
T 2frg_P           55 GRRTFLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILP  105 (106)
T ss_dssp             TTTEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCEEEEcCCCCEEEEEEccCCHHHCEEEEEEeecCCCCCEeEEEEEEEeC
Confidence            4788874 234457899999999999999999887765543 456776654

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=97.82  E-value=3.7e-05  Score=54.21  Aligned_cols=74  Identities=16%  Similarity=0.265  Sum_probs=47.1

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC-------CceeEEEEEEecc---CCCceeecCCCCCCCCeEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP-------MGKHRAYLELSGK---PNPAIFRSHPQGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~-------~G~~~~~i~l~~~---P~p~~~~~~~~~~~~~~~~L   73 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.       +|... .+.|...   +.|.++.....   ...+.|
T Consensus        63 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~g~gt-~L~V~~~~~~~~P~V~~~~~~---~~~vtL  138 (211)
T 2ak4_D           63 SGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGT-RLQVFPNIQNPDPAVYQLRDS---KSSDKS  138 (211)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSBTTSCCEECCCE-EEEEECCCSSCCCEEEEEBCC---SSSCCE
T ss_pred             CCCEEEEEcCCCCEEEEEECccccccCceEEEEEEcCCCcceeeECCCE-EEEEeCcCCCCCCEEEEccCC---CCceEE
Confidence            47888763  355678999999999999999999874       22221 3444432   33333332221   236789


Q ss_pred             EEEeCCCCCC
Q psy17207         74 TWMVSSYTPL   83 (123)
Q Consensus        74 ~w~~~s~~pi   83 (123)
                      .|.+.+..|.
T Consensus       139 ~Cl~~gf~P~  148 (211)
T 2ak4_D          139 VCLFTDFDSQ  148 (211)
T ss_dssp             EEEEESCCTT
T ss_pred             EEEeeeecCC
Confidence            9998765443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.82  E-value=3.5e-05  Score=62.19  Aligned_cols=70  Identities=27%  Similarity=0.269  Sum_probs=32.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCCceee---cCCCCCCCCeEEEEEEeCCCCCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNPAIFR---SHPQGRLPNSYNITWMVSSYTPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p~~~~---~~~~~~~~~~~~L~w~~~s~~pi~~y~   87 (123)
                      .+.|.|.+++.+|.|.|+|.|.|..|.....+.|..  .|......   .......+..+.|.|.+.++++. .+.
T Consensus       289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-~v~  363 (772)
T 3v2a_R          289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP-EIK  363 (772)
T ss_dssp             EEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-----------------------------------
T ss_pred             EEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC-eEE
Confidence            468999999999999999999999998877665553  33322111   01112246788899998775443 344

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=97.81  E-value=3.1e-05  Score=49.33  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+++...+....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cccEEEEecCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            47888766566778999999999999999999875

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=97.81  E-value=5.8e-05  Score=53.28  Aligned_cols=75  Identities=17%  Similarity=0.291  Sum_probs=47.3

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC---ceeE----EEEEEec--c-CCCceeecCCCCCCCCeEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM---GKHR----AYLELSG--K-PNPAIFRSHPQGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~---G~~~----~~i~l~~--~-P~p~~~~~~~~~~~~~~~~L   73 (123)
                      .+||++..  .+....|+|++++.+|+|.|.|.+.+..   +...    ..+.|..  . +.|..+...+.   ...+.|
T Consensus        61 ~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~~---~~~~tl  137 (210)
T 2eys_A           61 NGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDS---KSSDKS  137 (210)
T ss_dssp             ETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECCC---SSSSCE
T ss_pred             CCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCCC---CCCceE
Confidence            57888763  3556799999999999999999998842   1111    1344443  2 22333332222   226789


Q ss_pred             EEEeCCCCCC
Q psy17207         74 TWMVSSYTPL   83 (123)
Q Consensus        74 ~w~~~s~~pi   83 (123)
                      .|.+.++.|.
T Consensus       138 ~Cl~~gf~P~  147 (210)
T 2eys_A          138 VCLFTDFDSQ  147 (210)
T ss_dssp             EEEEESCCTT
T ss_pred             EEEcccccCC
Confidence            9998765443

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=97.81  E-value=1.7e-05  Score=51.44  Aligned_cols=35  Identities=26%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  ....+|+|++++.+|+|.|.|.+.+.
T Consensus        74 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  110 (132)
T 1nko_A           74 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG  110 (132)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             CccEEEeCCCCCCceEEEEcccCcccCeeEEEEEEcC
Confidence            478887532  34568999999999999999999875

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=3e-05  Score=50.48  Aligned_cols=26  Identities=19%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ...|+|.+++.+|+|.|.|.+.|..+
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~  103 (136)
T 2d9c_A           78 DFSISISNITPADAGTYYCVKFRKGS  103 (136)
T ss_dssp             BCCEEESSCCTTTCEEEEEEEEECCS
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeCCC
Confidence            56899999999999999999998653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.80  E-value=2.1e-05  Score=55.86  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .++|+.+...+....|+|.+++.+|+|.|+|.|.|..+
T Consensus       207 ~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          207 ISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS  244 (256)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred             cCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence            35788887777788999999999999999999999543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.79  E-value=2.8e-05  Score=56.36  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+.+...+....|+|.+++.+|+|.|+|.+.|..
T Consensus       199 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          199 SERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            478888777778889999999999999999999986

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=97.79  E-value=4.2e-05  Score=50.41  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+++...+....|+|++++.+|+|.|.|.+.+..
T Consensus        64 ~~Rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~   99 (137)
T 3bdb_A           64 DSRFSMTVNDQKFDLNIIGAREDDGGEYFCGEVEGI   99 (137)
T ss_dssp             CTTEEEEESSSBEEEEEESCCSTTCEEEEEEEECSS
T ss_pred             CCcEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            579988766677799999999999999999999864

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=97.79  E-value=2.6e-05  Score=54.69  Aligned_cols=74  Identities=15%  Similarity=0.281  Sum_probs=44.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC-------CceeEEEEEEecc---CCCceeecCCCCCCCCeEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP-------MGKHRAYLELSGK---PNPAIFRSHPQGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~-------~G~~~~~i~l~~~---P~p~~~~~~~~~~~~~~~~L   73 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.       +|... .+.|.+.   +.|..+...+.   ...+.|
T Consensus        56 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~gt-~L~V~~~~~~~~P~V~~~~~~---~~~~tl  131 (200)
T 2nw2_A           56 KGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGT-SLIVHPYIQNPDPAVYQLRDS---KSSDKS  131 (200)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC---CCCCCEECCCE-EEEEECCCSSCCCEEEEEEEC---C--CCE
T ss_pred             CCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcCCcceeeeeCCCE-EEEEecCcccCCCeEEEcCCC---CCCceE
Confidence            57888753  355678999999999999999998761       22222 3444432   22333332111   226789


Q ss_pred             EEEeCCCCCC
Q psy17207         74 TWMVSSYTPL   83 (123)
Q Consensus        74 ~w~~~s~~pi   83 (123)
                      .|.+.++.|.
T Consensus       132 ~Cl~~gf~P~  141 (200)
T 2nw2_A          132 VCLFTDFDSQ  141 (200)
T ss_dssp             EEEEESCCTT
T ss_pred             EEEeecccCC
Confidence            9998766554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.78  E-value=2.4e-05  Score=55.86  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=45.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeE--EEEEEe-ccCCCceeecCCCC---CCCCeEEEEEEeCC-CCCCcceE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELS-GKPNPAIFRSHPQG---RLPNSYNITWMVSS-YTPLEEFK   87 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~i~l~-~~P~p~~~~~~~~~---~~~~~~~L~w~~~s-~~pi~~y~   87 (123)
                      +.|.|.+++.+|.|.|+|.|.|..|...  .++.+. ....+|.+......   ..+..+.|.|.+.+ +++...+.
T Consensus        82 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  158 (239)
T 1i1c_A           82 SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTE  158 (239)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEE
Confidence            5899999999999999999999998643  344321 23334433321111   13567999999976 44433444

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=97.78  E-value=3.1e-05  Score=56.65  Aligned_cols=71  Identities=17%  Similarity=0.139  Sum_probs=45.4

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCcee---EEEEEEec-cCCCceeecC-CCCCCCCeEEEEEEeCCC-CCCcceEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKH---RAYLELSG-KPNPAIFRSH-PQGRLPNSYNITWMVSSY-TPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~---~~~i~l~~-~P~p~~~~~~-~~~~~~~~~~L~w~~~s~-~pi~~y~v   88 (123)
                      +.|.|......|.|.|+|.|.|..|..   ..+..+.. ...||.+... .....+..+.|.|.+.+. +|...+.|
T Consensus       180 s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W  256 (327)
T 2wng_A          180 STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTW  256 (327)
T ss_dssp             EEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEE
T ss_pred             EEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEE
Confidence            468898888888999999999998873   33444432 2333433321 112357889999999874 44334553

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=97.77  E-value=2.2e-05  Score=57.65  Aligned_cols=66  Identities=17%  Similarity=0.167  Sum_probs=44.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe--cc-CCCceeecCCC---CCCCCeEEEEEEeCCCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GK-PNPAIFRSHPQ---GRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~--~~-P~p~~~~~~~~---~~~~~~~~L~w~~~s~~pi   83 (123)
                      +.|.|......|.|.|+|.|.|..|.....+.+.  .. ..|..+...+.   ...+..+.|.|.+.+.+|.
T Consensus        72 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~  143 (323)
T 2wqr_A           72 SELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPS  143 (323)
T ss_dssp             EEEEEEHHHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCC
T ss_pred             EEEEEcHHHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCC
Confidence            4688998888899999999999998877765431  11 12223232221   1247789999998776543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=97.77  E-value=3.7e-06  Score=58.57  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             EEEEEEccc-CCCCCeeEEEEEEcCCcee-EEEEEEe
Q psy17207         17 RHTLMIRKV-VASDFGNYSCEATNPMGKH-RAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v-~~~D~G~YtC~A~N~~G~~-~~~i~l~   51 (123)
                      .+.|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus       165 ~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          165 EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            358999999 9999999999999999973 3445443

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.76  E-value=3.8e-05  Score=54.26  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC--CceeE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP--MGKHR   45 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~   45 (123)
                      ++|+.+..  .+....|+|.+++.+|+|.|+|.|.|.  +|...
T Consensus       186 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~fG~gt  229 (242)
T 2znx_A          186 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGDYXGQGT  229 (242)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSSCBCCCE
T ss_pred             cCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCcccCCCe
Confidence            57888764  345679999999999999999999994  44443

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=97.76  E-value=7.1e-05  Score=54.02  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=27.5

Q ss_pred             CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|+++..+.  ....|+|++++.+|+|.|.|.+.
T Consensus        88 ~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~  122 (267)
T 3u1s_H           88 QGRVTITRDSGASTVYMELRGLTADDTAIYYCLTG  122 (267)
T ss_dssp             TTTEEEEECGGGCCEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCCChhhCEEEEEEEC
Confidence            4789886433  45679999999999999999997

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=97.76  E-value=2.6e-05  Score=49.95  Aligned_cols=35  Identities=34%  Similarity=0.515  Sum_probs=28.8

Q ss_pred             EEEEEEcccCCCCCeeEEEEEE-cCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEAT-NPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~~i~l~   51 (123)
                      ...|.|.+++.+|+|.|+|.+. +..|.....+.|.
T Consensus        92 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~  127 (128)
T 3r0n_A           92 DATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR  127 (128)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEE
Confidence            4589999999999999999654 4678888777664

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=97.75  E-value=0.0003  Score=48.45  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             EEEEEccc-CCCCCeeEEEEEEcCCceeEE-EEEEe----ccCCCceeecCC-CCCCCCeEEEEEEeCC--CCCCcceEE
Q psy17207         18 HTLMIRKV-VASDFGNYSCEATNPMGKHRA-YLELS----GKPNPAIFRSHP-QGRLPNSYNITWMVSS--YTPLEEFKI   88 (123)
Q Consensus        18 ~~L~I~~v-~~~D~G~YtC~A~N~~G~~~~-~i~l~----~~P~p~~~~~~~-~~~~~~~~~L~w~~~s--~~pi~~y~v   88 (123)
                      ..+.|.++ .....=.+.+.|.|..|.... .+.+.    ..|.||...... .....+++.|.|..+.  +.++..|.|
T Consensus        62 ~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  141 (215)
T 1bqu_A           62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  141 (215)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEE
T ss_pred             ceEEEcCCccccccEEEEEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEE
Confidence            45677777 555555667899999999763 22232    357777544321 2225689999999653  457899999


Q ss_pred             EeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         89 KYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        89 ~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      +|+...  ...|..+.........+.+.+..|.
T Consensus       142 ~y~~~~--~~~~~~~~~~~~~~~~~~~~i~~L~  172 (215)
T 1bqu_A          142 QYRTKD--ASTWSQIPPEDTASTRSSFTVQDLK  172 (215)
T ss_dssp             EEEETT--CSSCEECCGGGGCSCCSEEEECSCC
T ss_pred             EEccCC--CCCceEeccccccCccceEEeCCCC
Confidence            999875  3568766542223334455555544

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=97.75  E-value=5.8e-05  Score=47.84  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+..  .+....|+|.+++.+|+|.|.|.+.+..|
T Consensus        62 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~  100 (114)
T 1u9k_A           62 MGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPPN  100 (114)
T ss_dssp             ETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             CCcEEEEecCcCCEEEEEECCCChHHCEEEEEEEecCCC
Confidence            47888764  34567899999999999999999998654

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.94  E-value=3.9e-06  Score=53.02  Aligned_cols=37  Identities=22%  Similarity=0.256  Sum_probs=29.9

Q ss_pred             cCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         5 ~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .++|+.+..  .+....|+|.+++.+|+|.|.|.+.|..
T Consensus        56 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (110)
T 1u3h_A           56 EDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASANS   94 (110)
Confidence            457887754  3445689999999999999999999853

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=97.74  E-value=1.6e-05  Score=55.37  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC--------CceeEEEEEEec--c-CCCceeecCCCCCCCCeEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP--------MGKHRAYLELSG--K-PNPAIFRSHPQGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~--------~G~~~~~i~l~~--~-P~p~~~~~~~~~~~~~~~~   72 (123)
                      .+|+++..  .+....|+|.+++.+|+|.|.|.+.+.        +|.. ..+.|..  . |.|.++...+.   ...+.
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~g~g-t~L~V~~~~~~~~P~V~~~~~~---~~~~t  134 (194)
T 1lp9_E           59 HQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQG-TSLSVVPNIQNPEPAVYQLKDP---RSQDS  134 (194)
T ss_dssp             CSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCC-EEEEEECCCSSCCCEEEEEECT---TSSSC
T ss_pred             CCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEecccCCcceeeeccC-ceEEecCcCCCCCCeeEecCCC---CCCcE
Confidence            57888752  234568999999999999999999873        1211 2344443  2 33333332221   23678


Q ss_pred             EEEEeCCCCCCc
Q psy17207         73 ITWMVSSYTPLE   84 (123)
Q Consensus        73 L~w~~~s~~pi~   84 (123)
                      |.|.+.++.|..
T Consensus       135 L~Cl~~gf~P~~  146 (194)
T 1lp9_E          135 TLCLFTDFDSQI  146 (194)
T ss_dssp             EEEEEESCCTTS
T ss_pred             EEEEeecccCCc
Confidence            999987754443

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=97.74  E-value=0.00012  Score=52.00  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+++..  .+....|+|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           61 KDNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDTL   97 (229)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECC
T ss_pred             CCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEEecC
Confidence            57998864  355678999999999999999999986

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.74  E-value=3e-05  Score=52.04  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+++........|+|.+++.+|+|.|.|.+.|..
T Consensus        74 ~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~  109 (146)
T 2yc1_B           74 PARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRYS  109 (146)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSS
T ss_pred             CCCeEEecCCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            479988766667889999999999999999999863

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.73  E-value=1.9e-05  Score=50.03  Aligned_cols=33  Identities=9%  Similarity=0.071  Sum_probs=27.0

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+++...... .|+|++++.+|+|.|.|.+.+.
T Consensus        64 ~Rf~~~~~~~~-~L~I~~~~~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           64 ADYLATRVTDT-ELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             EEEEEEEEETT-EEEEEEESCCSCEEEEEEEESS
T ss_pred             CCEEEEcCCCC-eEEEcCCCHhHCEEEEEEEEcC
Confidence            68877643333 8999999999999999999864

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=97.73  E-value=0.00012  Score=46.54  Aligned_cols=37  Identities=19%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+++..  .+....|+|.+++.+|+|.|.|.+.+..+
T Consensus        59 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~   97 (117)
T 3bp6_A           59 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHP   97 (117)
T ss_dssp             CTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECSS
T ss_pred             cCcEEEEEcCCCCEEEEEECcCCHHHCEEEEEEEEecCC
Confidence            57998864  45677899999999999999999987654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=97.72  E-value=4.1e-05  Score=55.79  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+...+....|+|.+++.+|+|.|+|.|.|..
T Consensus       223 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          223 PDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            578887766677899999999999999999999964

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=97.72  E-value=0.0001  Score=58.56  Aligned_cols=78  Identities=9%  Similarity=-0.043  Sum_probs=53.9

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCCceeecCCCCCCCCeEEEEEEeCCC-----CCCcceEEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQGRLPNSYNITWMVSSY-----TPLEEFKIK   89 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~s~-----~pi~~y~v~   89 (123)
                      +..+.|+|.++...|.|.|.|++.+........+.+..+|.+|....-. ......+.++|.++..     .++..|.|.
T Consensus       248 ~~~~~L~I~nl~~sd~g~y~~~C~~~~~i~~~~l~v~~pP~~P~nl~C~-~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~  326 (488)
T 2q7n_A          248 GQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCE-THDLKEIICSWNPGRITGLVGPRNTEYTLF  326 (488)
T ss_dssp             SSCEEEECCSCCCCCSSCEEEEEEESSCEEEEEEEEECCCCCCCSCEEE-BSSSSEEEEEECCCSCCCCCTTSSCEEEEE
T ss_pred             ceEEEEEEeCCCcccCCcEEEEEEcCCeEEEEEEEeeCCCCCCcccEEE-EcCCCEEEEEEeCCCcCCCCCCCceeEEEE
Confidence            4567899999999999999998885333333445555677766533211 1246789999997532     478899999


Q ss_pred             eEEc
Q psy17207         90 YRKI   93 (123)
Q Consensus        90 yr~~   93 (123)
                      |+..
T Consensus       327 y~~~  330 (488)
T 2q7n_A          327 ESIS  330 (488)
T ss_dssp             ETTT
T ss_pred             EEEC
Confidence            9754

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=97.72  E-value=4.7e-05  Score=49.43  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+++...+....|+|.+++.+|+|.|.|.+.+..
T Consensus        60 ~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           60 PDRFSGSKSGTSASLAISGLRSEDEADYYCLSWDDS   95 (123)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cCCEEEEccCCEEEEEECCCCHHHCEEEEEEEEcCC
Confidence            479988766678899999999999999999998864

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=97.72  E-value=1.7e-05  Score=55.19  Aligned_cols=71  Identities=17%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE--EEEEEeccCCCceee-cCCC---CCCCCeEEEEEEeCCC-CCCcceE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELSGKPNPAIFR-SHPQ---GRLPNSYNITWMVSSY-TPLEEFK   87 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~i~l~~~P~p~~~~-~~~~---~~~~~~~~L~w~~~s~-~pi~~y~   87 (123)
                      ...|.|.+++..|.|.|+|.|.|..+...  ..+.+.....+|.+. ..+.   ...+..+.|.|.+.+. ++...+.
T Consensus        65 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~  142 (214)
T 1ow0_A           65 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR  142 (214)
T ss_dssp             EEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEE
T ss_pred             EEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEE
Confidence            45799999999999999999999987543  333221233444432 2111   1245679999999774 4333444

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.72  E-value=4.1e-06  Score=56.87  Aligned_cols=31  Identities=39%  Similarity=0.589  Sum_probs=27.9

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ..+.|.|.+++.+|.|.|+|.|.|.+|....
T Consensus       169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  199 (209)
T 1nbq_A          169 TTGELVFDPLSASDTGEYSCEARNGYGTPMT  199 (209)
T ss_dssp             TTCCEEESSCCGGGCCCEEEEEECSSSCCEE
T ss_pred             CcceEEEEeccccCCeEEEEEEeCCcCcccc
Confidence            3468999999999999999999999999844

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=97.72  E-value=3.6e-05  Score=54.15  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+.+..  .+....|+|.+++.+|+|.|+|.|.|.
T Consensus       192 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          192 KGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            57888764  355789999999999999999999995

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=97.72  E-value=3.7e-05  Score=51.30  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=27.9

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      ....|.|.++  +|+|.|+|.|.|.+|.... ++.|.
T Consensus       146 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          146 SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVH  180 (182)
T ss_dssp             SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEE
Confidence            4578999998  5999999999999999864 55543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.71  E-value=1.3e-05  Score=57.01  Aligned_cols=69  Identities=13%  Similarity=0.034  Sum_probs=44.5

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcC-CceeE---EEE--EEeccCCCceeecCC--CCCCCCeEEEEEEeCCCCCC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNP-MGKHR---AYL--ELSGKPNPAIFRSHP--QGRLPNSYNITWMVSSYTPL   83 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~---~~i--~l~~~P~p~~~~~~~--~~~~~~~~~L~w~~~s~~pi   83 (123)
                      +..+.|.|..+...|.|.|+|.|.|. .|...   ..+  .|...|.........  ....+..+.|.|.+.+.++.
T Consensus       139 ~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p  215 (265)
T 2oz4_A          139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP  215 (265)
T ss_dssp             SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC
T ss_pred             CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC
Confidence            34678999999999999999999854 47765   444  444444332111100  11247788899988776554

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.71  E-value=4.5e-05  Score=48.43  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=29.4

Q ss_pred             cCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         5 ~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .++|+.+..  ......|+|.+++.+|+|.|.|.+.|.
T Consensus        51 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   88 (113)
T 1sq2_N           51 KGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   88 (113)
T ss_dssp             CBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             eCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            357887653  245678999999999999999999984

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=97.71  E-value=4.3e-05  Score=51.06  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+++........|+|.+++.+|+|.|.|.+.+..
T Consensus        58 ~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~   93 (143)
T 3u6r_L           58 PARFSGSGSGTDFTLTISNLEPEDFAVYYCQQRSDW   93 (143)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSB
T ss_pred             cCcEeEEccCCEEEEEEccCcccCCEEEEEEEecCC
Confidence            579988766678899999999999999999998864

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=97.70  E-value=0.00011  Score=47.23  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|.+++.+|+|.|.|.+.+.
T Consensus        67 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  103 (124)
T 1dlf_H           67 KGRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYY  103 (124)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            479988753  45778999999999999999999874

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.69  E-value=4.5e-05  Score=53.93  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ++|+.+...  +....|+|.+++.+|+|.|+|.|.|..
T Consensus       199 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          199 KGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            358887654  456789999999999999999999964

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.69  E-value=3.9e-05  Score=48.72  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ++|+.+.  ..+....|+|++++.+|+|.|.|.+.+.
T Consensus        60 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   96 (116)
T 1fo0_A           60 VGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGD   96 (116)
T ss_dssp             ETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            4788874  3455778999999999999999999873

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.69  E-value=3.2e-05  Score=48.95  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.+..  .+....|+|.+++.+|+|.|.|.+.+
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~  100 (115)
T 2atp_B           65 KKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             TTCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEEC
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEcc
Confidence            57998876  45567899999999999999999876

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=97.69  E-value=3e-05  Score=51.98  Aligned_cols=29  Identities=21%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ...|.|.+++.+|+|.|+|.|.|..|...
T Consensus       136 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~  164 (175)
T 1fnl_A          136 NSDFHIPKATLKDSGSYFCRGLVGSKNVS  164 (175)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCEEEEcccChhhCeEEEEEEEcCCCCcc
Confidence            45799999999999999999999766533

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=97.68  E-value=0.00011  Score=51.97  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC----CceeEEEEEEec---cCCCceeecCCCCCCCCeEEEEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP----MGKHRAYLELSG---KPNPAIFRSHPQGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~----~G~~~~~i~l~~---~P~p~~~~~~~~~~~~~~~~L~w~   76 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+...    +|... .+.|..   .|.|.++...+.   ..++.|.|.
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT-~L~V~~~~~~~~P~V~~~~~~---~~~~tl~Cl  133 (200)
T 3rgv_A           58 SRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGT-KLQVVPNIQNPDPAVYQLRDS---KSSDKSVCL  133 (200)
T ss_dssp             ETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEESSSCCCCCCCE-EEEEECCCSSCCCEEEEEEES---SSSSCEEEE
T ss_pred             CCceEEEECCCCCEEEEEEcCCcCccCCCEEEEeccCcccccCcCE-EEEEeCCCCCCCCeEEEccCC---CCCceEEEE
Confidence            47888763  345678999999999999999998742    33332 334443   233444332111   233679999


Q ss_pred             eCCCCCCc
Q psy17207         77 VSSYTPLE   84 (123)
Q Consensus        77 ~~s~~pi~   84 (123)
                      +.+..|..
T Consensus       134 ~~gf~P~i  141 (200)
T 3rgv_A          134 FTDFDSQT  141 (200)
T ss_dssp             EESCCTTC
T ss_pred             cccccCCe
Confidence            87766633

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.68  E-value=4.1e-05  Score=50.11  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=32.0

Q ss_pred             ccCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          4 ETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         4 ~~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      ..++||.+..  ......|+|.+++.+|+|.|.|.+.|..+.
T Consensus        50 ~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~   91 (126)
T 3moq_A           50 SIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFA   91 (126)
T ss_dssp             CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEEEET
T ss_pred             EeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEcCCC
Confidence            3457887753  245788999999999999999999987654

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=97.68  E-value=0.00012  Score=51.84  Aligned_cols=75  Identities=17%  Similarity=0.315  Sum_probs=46.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeE----EEEEEecc---CCCceeecCCCCCCCCeEEEEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHR----AYLELSGK---PNPAIFRSHPQGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~----~~i~l~~~---P~p~~~~~~~~~~~~~~~~L~w~   76 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+..+...    ..+.|...   +.|.++...+   ....+.|.|.
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~---~~~~vtL~C~  134 (215)
T 1oga_D           58 LKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLRD---SKSSDKSVCL  134 (215)
T ss_dssp             ETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEECCCSSCCCEEEEEEB---SSSSSCEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEecccccceeCCCEEEEEeccCCCcCCEEEEcCC---CCCCeEEEEE
Confidence            47888763  34567899999999999999999986422111    23444432   2233332111   1236789999


Q ss_pred             eCCCCCC
Q psy17207         77 VSSYTPL   83 (123)
Q Consensus        77 ~~s~~pi   83 (123)
                      +.+..|.
T Consensus       135 ~~gf~P~  141 (215)
T 1oga_D          135 FTDFDSQ  141 (215)
T ss_dssp             EESCCTT
T ss_pred             ccccccC
Confidence            8765443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.68  E-value=4.6e-05  Score=55.17  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++||.+...+....|+|.+++.+|+|.|+|.|.|..+
T Consensus       219 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~  255 (282)
T 1qok_A          219 PARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYP  255 (282)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             cCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCC
Confidence            5788887666788999999999999999999998643

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=97.68  E-value=5.8e-05  Score=49.80  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+.+........|+|++++.+|+|.|.|.+.+..
T Consensus        66 ~~Rf~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~  101 (135)
T 1p4b_L           66 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSN  101 (135)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             CCCEEEEcCCCEEEEEECCCChhHCEEEEEEEecCC
Confidence            479988765667899999999999999999998753

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=97.66  E-value=0.00012  Score=52.72  Aligned_cols=75  Identities=19%  Similarity=0.327  Sum_probs=47.7

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCC-------ceeEEEEEEec---cCCCceeecCCCCCCCCeEEE
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPM-------GKHRAYLELSG---KPNPAIFRSHPQGRLPNSYNI   73 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~-------G~~~~~i~l~~---~P~p~~~~~~~~~~~~~~~~L   73 (123)
                      .+|+++.  ..+....|+|++++.+|+|.|.|.+....       |.. ..+.|..   .|.|..+...+.   ...+.|
T Consensus        56 ~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~~~~~~~fG~G-T~L~V~~~~~~p~P~Vf~~~~~---~~~vtl  131 (229)
T 3mbe_C           56 NGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTG-TLLSVKPNIQNPEPAVYQLKDP---RSQDST  131 (229)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSSSTTCEEECCC-CEEEEECCCSSCCCEEEEEECT---TCTTCE
T ss_pred             CCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCCCcccceeCCC-EEEEEecccCCCCCEEEEccCC---CCCEEE
Confidence            4788876  34567899999999999999999998532       111 1344443   233333332111   234789


Q ss_pred             EEEeCCCCCCc
Q psy17207         74 TWMVSSYTPLE   84 (123)
Q Consensus        74 ~w~~~s~~pi~   84 (123)
                      .|.+.++.|..
T Consensus       132 ~Cl~~gf~P~i  142 (229)
T 3mbe_C          132 LCLFTDFDSQI  142 (229)
T ss_dssp             EEEEESCCSSS
T ss_pred             EEEccccCCce
Confidence            99988766643

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.65  E-value=2.5e-05  Score=49.43  Aligned_cols=36  Identities=19%  Similarity=0.144  Sum_probs=29.0

Q ss_pred             CCCEEEEEcC--CEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          6 TERRIMETRG--SRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         6 d~R~~i~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .+|+.+....  ....|+|++++.+|+|.|.|.+.+..
T Consensus        63 ~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~  100 (116)
T 3bj9_1           63 PPRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARS  100 (116)
T ss_dssp             CTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSS
T ss_pred             CCcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCCC
Confidence            4788876433  34589999999999999999998753

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=97.64  E-value=7.3e-05  Score=47.71  Aligned_cols=35  Identities=9%  Similarity=0.199  Sum_probs=29.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           65 RAKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTRGGH  101 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            369988743  55678999999999999999999876

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=97.64  E-value=7e-05  Score=47.41  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC--CceeEEEEEEeccC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP--MGKHRAYLELSGKP   54 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~--~G~~~~~i~l~~~P   54 (123)
                      +.|+.+..  ......|+|.+++.+|+|.|.|.....  +......+.|.+.|
T Consensus        59 ~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~  111 (116)
T 3bia_X           59 STKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR  111 (116)
T ss_dssp             STTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECSSSSCCEEEEEEEEEEC
T ss_pred             CceEEEeccCCCCEEEEEEccCChhHCEEEEEEEEcCCcccceEEEEEEEEec
Confidence            35777642  234557999999999999999998853  22334556666544

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=97.64  E-value=0.00027  Score=48.53  Aligned_cols=80  Identities=15%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCceeEEE--EEEec----cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEe
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKHRAY--LELSG----KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKY   90 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~--i~l~~----~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~y   90 (123)
                      .++|.++.....-.|.+.|.|..|....+  +.+.-    .|.+|.... ......+++.|.|.++  .+.+|..|.|+|
T Consensus        69 ~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~-~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~  147 (209)
T 2vkw_A           69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEG-QMGEDGNSIKVNLIKQDDGGSPIRHYLVRY  147 (209)
T ss_dssp             EEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEE-EECTTSSCEEEEEECCCCTTSCCCEEEEEE
T ss_pred             eEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccc-cccccCCeEEEEEECcccCCCCCceEEEEE
Confidence            67889998888888899999999976542  22321    355554432 1223578999999986  567999999999


Q ss_pred             EEcCCCCCCcee
Q psy17207         91 RKIPGNEPSPMS  102 (123)
Q Consensus        91 r~~~~~~~~w~~  102 (123)
                      +.   ....|..
T Consensus       148 ~~---~~~~~~~  156 (209)
T 2vkw_A          148 RA---LSSEWKP  156 (209)
T ss_dssp             EE---TTSCCCC
T ss_pred             EC---CCCCCce
Confidence            98   2345654

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=97.64  E-value=4.8e-05  Score=48.10  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=28.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.|
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   99 (114)
T 1sjv_A           64 KGRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTHY   99 (114)
T ss_dssp             TTCEEEEECTTTCCEEEEECSCCGGGCSEEEEEECC
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEeEEc
Confidence            478988753  4467899999999999999999987

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=97.64  E-value=7.6e-05  Score=47.30  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (117)
T 2yc1_A           65 KGRFTISRDDAKKTLSLQMNSLRAEDTAVYYCARGGV  101 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            469988643  55778999999999999999999875

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=97.64  E-value=6.8e-05  Score=47.80  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           65 KGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWGG  101 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             CCeEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            368988643  45678999999999999999999875

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.63  E-value=6.2e-05  Score=51.66  Aligned_cols=33  Identities=9%  Similarity=0.000  Sum_probs=27.2

Q ss_pred             EEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207         21 MIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus        21 ~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .+..+...|.|.|+|.|.|.+|....++.|...
T Consensus       178 ~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          178 STLRINTTTNEIFYCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EEEEEECCTTCEEEEEEEETTTTEEEEEEEECC
T ss_pred             EEEEEeccCCcEEEEEEEeCccceeeEEEEEec
Confidence            333556799999999999999999998887754

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=97.63  E-value=0.00016  Score=46.17  Aligned_cols=52  Identities=12%  Similarity=0.104  Sum_probs=37.8

Q ss_pred             CCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++  ++.+|..|.|+||..   ...|..+... .....+.+.|++|.+
T Consensus        19 ~~~sv~L~W~pP~~~~~~I~gY~vey~~~---~~~W~~~~~~-~~~~~t~~~v~~L~p   72 (108)
T 1v5j_A           19 TPRGVLLHWDPPELVPKRLDGYVLEGRQG---SQGWEVLDPA-VAGTETELLVPGLIK   72 (108)
T ss_dssp             CSSSEEEEEECCSCCSSCCCBEEEEEEET---TCCCEEEEEE-ECSSCCEEECCCCCT
T ss_pred             eCCEEEEEECCCCCCCCCCcEEEEEEEeC---CCCcEEeeee-cCCCcCEEEeCCCCC
Confidence            357899999975  568999999999983   3679876644 234556677777654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=97.63  E-value=2.3e-05  Score=53.16  Aligned_cols=32  Identities=9%  Similarity=0.127  Sum_probs=27.6

Q ss_pred             EEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      +.|.++..+|+|.|+|.|.|.+|...+...|.
T Consensus       142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            56778889999999999999999998876553

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.63  E-value=8.1e-05  Score=47.65  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=29.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        64 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           64 AGRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLR  100 (121)
T ss_dssp             BTTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             CCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEec
Confidence            368988753  45678999999999999999999875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=97.62  E-value=0.0001  Score=56.56  Aligned_cols=64  Identities=9%  Similarity=0.120  Sum_probs=42.9

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc--C--------------CCcee-ecCCC----CCCCCeEEEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK--P--------------NPAIF-RSHPQ----GRLPNSYNITWM   76 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~--P--------------~p~~~-~~~~~----~~~~~~~~L~w~   76 (123)
                      +.|.|.++...| |.|+|.|.|..|.......|...  +              .+|.+ ...+.    ...+..+.|.|.
T Consensus       194 s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          194 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            479999999999 99999999998886654443311  1              12322 22211    123778999999


Q ss_pred             eCCCCC
Q psy17207         77 VSSYTP   82 (123)
Q Consensus        77 ~~s~~p   82 (123)
                      +.+.+|
T Consensus       273 ~~g~~p  278 (457)
T 1hzh_H          273 VVDVSH  278 (457)
T ss_dssp             EECCCT
T ss_pred             EEcccC
Confidence            987654

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=97.62  E-value=0.00026  Score=46.37  Aligned_cols=37  Identities=19%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ++|+.+..  .+....|+|++++.+|+|.|.|.+.+..+
T Consensus        69 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~  107 (134)
T 3bik_B           69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHP  107 (134)
T ss_dssp             CTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSS
T ss_pred             CCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            57998863  45577899999999999999999987643

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=97.61  E-value=3.6e-05  Score=52.48  Aligned_cols=27  Identities=11%  Similarity=-0.004  Sum_probs=24.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      .+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus       155 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          155 QALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             eeEEEeeecCcccCeeEEEEEEccCCC
Confidence            478999999999999999999998653

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=97.61  E-value=0.00033  Score=55.03  Aligned_cols=70  Identities=13%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCcee-EEEEEEe-cc--CCCceeecCCCCCCCCeEE-EEEEeCCC-CCCcceE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKH-RAYLELS-GK--PNPAIFRSHPQGRLPNSYN-ITWMVSSY-TPLEEFK   87 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~~i~l~-~~--P~p~~~~~~~~~~~~~~~~-L~w~~~s~-~pi~~y~   87 (123)
                      +.|.|..+...|.|.|+|.|.|..+.. ...+.+. +.  +.+|.+...+.......+. |.|.+.+. +|...+.
T Consensus       361 s~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~  436 (512)
T 1zvo_C          361 SRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLM  436 (512)
T ss_pred             EEEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEE
Confidence            579999999999999999999998865 3444332 22  3344333211111466788 99999874 4433334

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=97.60  E-value=4.6e-05  Score=52.55  Aligned_cols=69  Identities=14%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCcee--EEEEEEe-ccCCCceeec-CCC--CCCCCeEEEEEEeCCC-CCCcceE
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKH--RAYLELS-GKPNPAIFRS-HPQ--GRLPNSYNITWMVSSY-TPLEEFK   87 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~--~~~i~l~-~~P~p~~~~~-~~~--~~~~~~~~L~w~~~s~-~pi~~y~   87 (123)
                      .|.|......|.|.|+|.|.|..|..  ..++.+. ....+|.+.. ...  ......+.|.|.+.+. ++...+.
T Consensus        69 ~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~  144 (207)
T 1l6x_A           69 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVE  144 (207)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEE
Confidence            34444444455999999999999875  3344331 2233343321 111  1134569999999774 4323444

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.76  E-value=8.8e-06  Score=56.76  Aligned_cols=75  Identities=16%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC---CceeEEEEEEec--cCC-CceeecCCCCCCCCeEEEEEEe
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP---MGKHRAYLELSG--KPN-PAIFRSHPQGRLPNSYNITWMV   77 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~---~G~~~~~i~l~~--~P~-p~~~~~~~~~~~~~~~~L~w~~   77 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.   +|... .+.|..  .|. |.++...+   ....+.|.|.+
T Consensus        58 ~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~fg~gT-~L~V~~~~~~~~P~V~~~~~---~~~~vtL~C~~  133 (185)
T 3c6l_A           58 DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGT-QLVVKPNIQNPEPAVYQLKD---PRSQDSTLCLF  133 (185)
Confidence            46887753  234568999999999999999999862   33221 333332  222 22222111   12378899998


Q ss_pred             CCCCCCc
Q psy17207         78 SSYTPLE   84 (123)
Q Consensus        78 ~s~~pi~   84 (123)
                      .+..|..
T Consensus       134 ~gf~P~p  140 (185)
T 3c6l_A          134 TDFDSQI  140 (185)
Confidence            7765543

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=97.59  E-value=8.7e-05  Score=47.30  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  .....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~  101 (120)
T 1n4x_H           65 KGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  101 (120)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcc
Confidence            368988643  45678999999999999999999875

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=97.58  E-value=6.8e-05  Score=47.59  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=29.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (116)
T 1a2y_B           65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD  100 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            68887642  55778999999999999999999976

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=97.58  E-value=8.9e-05  Score=47.38  Aligned_cols=34  Identities=12%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+.+..+  .....|+|++++.+|+|.|.|.+.+.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (121)
T 1j05_H           66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  101 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEBT
T ss_pred             CcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            68887642  45678999999999999999999875

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.57  E-value=4.3e-05  Score=52.95  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|.... .+.|.
T Consensus       163 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~  199 (218)
T 3k0w_A          163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII  199 (218)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEE
T ss_pred             CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEE
Confidence            3458999999999999999999999998543 34443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.57  E-value=7.3e-05  Score=52.58  Aligned_cols=34  Identities=12%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.+...  +...+|+|.+++.+|+|.|+|.|.|
T Consensus       196 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          196 KGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            378888643  5567899999999999999999998

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.57  E-value=0.00031  Score=49.82  Aligned_cols=60  Identities=12%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             EEEEccc---CCCCCee--EEEEEEcCCceeEEEEEEec--cCCCceeecCCCCCCCCeEEEEEEeC
Q psy17207         19 TLMIRKV---VASDFGN--YSCEATNPMGKHRAYLELSG--KPNPAIFRSHPQGRLPNSYNITWMVS   78 (123)
Q Consensus        19 ~L~I~~v---~~~D~G~--YtC~A~N~~G~~~~~i~l~~--~P~p~~~~~~~~~~~~~~~~L~w~~~   78 (123)
                      .|.|..+   +..|.|.  |+|.|.|..|.....+.|..  .|.|...........+..+.|.|.+.
T Consensus        57 ~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~  123 (265)
T 2oz4_A           57 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH  123 (265)
T ss_dssp             EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC
T ss_pred             eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc
Confidence            4555555   7788885  99999999999887666554  44433222222222578899999987

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=97.53  E-value=0.0003  Score=45.37  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             cCCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          5 TTERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         5 ~d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ..+|+.+.  .......|+|.+++.+|+|.|.|......
T Consensus        69 ~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           69 WTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPS  107 (122)
T ss_dssp             CSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTT
T ss_pred             ecCcEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCC
Confidence            34799884  34567789999999999999999988764

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.53  E-value=3.7e-05  Score=52.69  Aligned_cols=33  Identities=12%  Similarity=0.086  Sum_probs=29.4

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      +.|+|.++..+|.|.|+|+|.|..|....++.+
T Consensus       177 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          177 SYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             EEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             EEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            569999999999999999999999888877644

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=97.53  E-value=9.3e-05  Score=47.43  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           65 KGRFTVSRDSGKNTVYLQMNSLKPEDTAIYYCAARSG  101 (123)
T ss_dssp             TTTEEEEEETTEEEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            469988743  34568999999999999999999875

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.52  E-value=0.00028  Score=53.68  Aligned_cols=63  Identities=11%  Similarity=0.253  Sum_probs=42.6

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec-----------cCC-CceeecCCC----CCCCCeEEEEEEeCCCC
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG-----------KPN-PAIFRSHPQ----GRLPNSYNITWMVSSYT   81 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~-----------~P~-p~~~~~~~~----~~~~~~~~L~w~~~s~~   81 (123)
                      +.|+|.+++..| |.|+|.|.|..|.......+..           .+. |..+...+.    ...+..+.|.|.+.+.+
T Consensus       180 s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~  258 (434)
T 1igy_B          180 SSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDIS  258 (434)
T ss_dssp             EEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCC
T ss_pred             EEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccc
Confidence            579999999999 9999999999998544333321           111 333222221    23578899999998764

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=97.51  E-value=9.5e-05  Score=52.91  Aligned_cols=70  Identities=16%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC----CceeEEEEEEecc--CC-CceeecCCCCCCCCeEEEEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP----MGKHRAYLELSGK--PN-PAIFRSHPQGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~----~G~~~~~i~l~~~--P~-p~~~~~~~~~~~~~~~~L~w~   76 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+.+.    +|... .+.|.+.  |. |.++...+.   ...+.|.|.
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~g~gt-~L~V~~~~~~~~P~V~~~~~~---~~~~tL~Cl  134 (229)
T 2q86_A           59 NGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGT-QLIVIPYIQNPEPAVYQLKDP---RSQDSTLCL  134 (229)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCEECCCE-EEEEECCCSSCCCEEEEEECT---TSTTCEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEecCcccccCCE-EEEEECcCCCCCCEEEEccCC---CCCeEEEEE
Confidence            47888753  345678999999999999999999763    22222 3444432  22 333322111   226778888


Q ss_pred             eCC
Q psy17207         77 VSS   79 (123)
Q Consensus        77 ~~s   79 (123)
                      +.+
T Consensus       135 ~~g  137 (229)
T 2q86_A          135 FTD  137 (229)
T ss_dssp             EEE
T ss_pred             ECC
Confidence            765

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=97.51  E-value=0.00012  Score=46.85  Aligned_cols=35  Identities=11%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|.+++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (122)
T 1xiw_D           65 KDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGY  101 (122)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             CCcEEEEEecCCCEEEEEECCCCHHHCEEEEEEEecc
Confidence            369988643  45678999999999999999999873

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=97.51  E-value=9.4e-05  Score=52.18  Aligned_cols=74  Identities=18%  Similarity=0.308  Sum_probs=46.0

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC----CceeEEEEEEec---cCCCceeecCCCCCCCCeEEEEEE
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP----MGKHRAYLELSG---KPNPAIFRSHPQGRLPNSYNITWM   76 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~----~G~~~~~i~l~~---~P~p~~~~~~~~~~~~~~~~L~w~   76 (123)
                      .+|+++.  ..+....|+|++++.+|+|.|.|.+...    +|... .+.|..   .|.|.++...+.   ..++.|.|.
T Consensus        58 ~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~~~~~~fG~GT-~L~V~~~~~~~~P~V~~~~~~---~~~~tl~Cl  133 (199)
T 3gsn_A           58 KGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGT-SLTVIPNIQNPDPAVYQLRDS---KSSDKSVCL  133 (199)
T ss_dssp             ETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEESSSCEEECSCE-EEEEECCCSSCCCEEEECCCS---SSSSSCCEE
T ss_pred             cCceEEEECCCCCEEEEEEccCcccCCccEEEEEcccccccCCCCE-EEEEecccCCCCCEEEEcccC---CCCceEEEE
Confidence            3688775  3455788999999999999999998653    12211 344443   233444332222   234678899


Q ss_pred             eCCCCCC
Q psy17207         77 VSSYTPL   83 (123)
Q Consensus        77 ~~s~~pi   83 (123)
                      +.+..|.
T Consensus       134 ~~gf~P~  140 (199)
T 3gsn_A          134 FTDFDSQ  140 (199)
T ss_dssp             EETCCTT
T ss_pred             eecccCC
Confidence            8776663

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.51  E-value=0.00013  Score=47.35  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=29.8

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        64 ~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  100 (127)
T 1kxt_B           64 KGRFTISRDNAANTAYLQMDSLKPEDTAVYYCAAGPG  100 (127)
T ss_dssp             TTTEEEEECSSSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             CCeEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEEcC
Confidence            469988753  45678999999999999999999875

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=97.51  E-value=2.6e-05  Score=62.72  Aligned_cols=98  Identities=8%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             ccCCCCCeeEEEEEEcCCceeEE---EEEEeccCCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCC
Q psy17207         24 KVVASDFGNYSCEATNPMGKHRA---YLELSGKPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNE   97 (123)
Q Consensus        24 ~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~   97 (123)
                      +....|.|.|.|.+.|.+|.+..   ......+|.+|.....  .....++.|+|.++   ++.++..|.|+|+......
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl~~--~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTA--VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCEEE--ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccceEE--EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC


Q ss_pred             CCc------eeeeeccccccccceeeeeeecC
Q psy17207         98 PSP------MSNQLTGTNQYQNRRLVRKITEN  123 (123)
Q Consensus        98 ~~w------~~~~~~~~~~~~~~~~~~~~~~~  123 (123)
                      ..|      ..+.........+...+.+|.++
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~  410 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPH  410 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTT
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCC

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=97.51  E-value=0.00022  Score=51.38  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC-------CceeEEEEEEec---cCCCceeecCCCCCCCCeEEEE
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP-------MGKHRAYLELSG---KPNPAIFRSHPQGRLPNSYNIT   74 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~-------~G~~~~~i~l~~---~P~p~~~~~~~~~~~~~~~~L~   74 (123)
                      +|+++.  ..+....|+|++++.+|+|.|.|.+...       +|... .+.|..   .|.|..+...+.   ..++.|.
T Consensus        69 ~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~~~~~~~~~~fG~GT-~LtV~~~~~~~~P~V~~~~~~---~~~~tl~  144 (226)
T 3tjh_C           69 NGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGA-KLTVSPNIQNPDPAVYQLRDS---KSSDKSV  144 (226)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSCSSSEEECCCE-EEEEECCCSSCCCEEEEEEEC---C---CEE
T ss_pred             CcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEEecCCccccccCCCe-EEEEeCCCCCCCCEEEEcccC---CCCeEEE
Confidence            788876  3456788999999999999999998742       22221 233333   233433322111   2346799


Q ss_pred             EEeCCCCCCc
Q psy17207         75 WMVSSYTPLE   84 (123)
Q Consensus        75 w~~~s~~pi~   84 (123)
                      |.+.+..|..
T Consensus       145 Cl~~~f~P~i  154 (226)
T 3tjh_C          145 CLFTDFDSQT  154 (226)
T ss_dssp             EEEESCCTTC
T ss_pred             EEcccccCCc
Confidence            9987765533

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=97.50  E-value=0.0001  Score=47.28  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+.+..+  +....|+|.+++.+|+|.|.|.+.+.
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  103 (123)
T 2p45_B           68 GRMTISRDKGKNTVYLQMDSLKPEDTATYYCAAGGY  103 (123)
T ss_dssp             TTEEEECCTTSSEEEEEESSCCGGGCEEEEEEESSC
T ss_pred             CeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEec
Confidence            68988743  45678999999999999999999874

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=97.50  E-value=0.00016  Score=46.77  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  .....|+|.+++.+|+|.|.|.+.+.
T Consensus        64 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  100 (124)
T 1yc7_A           64 KGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCG  100 (124)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCcEEEEEECCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            369988753  35678999999999999999999875

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.49  E-value=0.00015  Score=47.18  Aligned_cols=30  Identities=23%  Similarity=0.321  Sum_probs=27.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ...|.|..|..+|+|.|.|.|.|..|..++
T Consensus        78 ~fiL~f~~V~~sDsG~YrCsAn~~~g~ieS  107 (122)
T 1xau_A           78 VFVLHFKPIHLSDNGSYSCSTNFNSQVINS  107 (122)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEEEC
T ss_pred             eEEEEEeeEEEcCCccEEEEeeCCCCceee
Confidence            458999999999999999999999988876

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=97.49  E-value=0.00015  Score=46.66  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=28.8

Q ss_pred             CCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+++... .....|+|.+++.+|+|.|.|.+.+.
T Consensus        61 ~~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   96 (121)
T 2oi9_C           61 PDGYKASRPSQENFSLTLESATPSQTSVYFCASGGG   96 (121)
T ss_dssp             CTTEEEECCSSSEEEEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCeEEEcCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            478887642 33678999999999999999999875

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.49  E-value=9.7e-05  Score=50.14  Aligned_cols=27  Identities=15%  Similarity=0.266  Sum_probs=24.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus       146 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          146 KVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            456799999999999999999999864

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=97.48  E-value=0.00014  Score=47.00  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=29.5

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (127)
T 2x1q_A           65 KGRFTFSRDNAKNLLYLEMLSLEPEDTAVYYCAASSR  101 (127)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCcEEEEEeCCCCEEEEEEcCCCHHHCEEEEEEEEec
Confidence            369988643  45678999999999999999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.48  E-value=9.7e-05  Score=52.87  Aligned_cols=46  Identities=13%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCC-----ceeEEEEEEeccCCCceee
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPM-----GKHRAYLELSGKPNPAIFR   60 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~-----G~~~~~i~l~~~P~p~~~~   60 (123)
                      .....|.|.+++.+|+|.|+|.|.|..     -++...+.|.+.+..|.+.
T Consensus       149 ~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~l~  199 (242)
T 1p6f_A          149 KVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLA  199 (242)
T ss_dssp             SSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--------
T ss_pred             CceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCCccc
Confidence            456789999999999999999999864     1223456666655554443

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=97.47  E-value=0.00014  Score=46.30  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.+.. .....+|+|++++.+|+|.|.|...+
T Consensus        65 ~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~   99 (119)
T 2pnd_A           65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTW   99 (119)
T ss_dssp             TTTEEECCSSTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             cCcEEEccCCCCCEEEEEccCCcccCEEEEEEEEE
Confidence            36776642 23456799999999999999999887

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=97.47  E-value=0.00013  Score=51.83  Aligned_cols=75  Identities=19%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC--------CceeEEEEEEec---cCCCceeecCCCCCCCCeEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP--------MGKHRAYLELSG---KPNPAIFRSHPQGRLPNSYN   72 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~--------~G~~~~~i~l~~---~P~p~~~~~~~~~~~~~~~~   72 (123)
                      .+|+++..  .+....|+|++++.+|+|.|.|.+...        +|... .+.|..   .|.|..+...+.   ..++.
T Consensus        59 ~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~~~~~~~~~fG~GT-~L~V~~~~~~~~PsVf~l~~~---~~~~t  134 (208)
T 4ei6_A           59 EGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGT-RVSVFPYIQNPDPAVYQLRDS---KSSDK  134 (208)
T ss_dssp             ETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEECCSSCCCCEECCCE-EEEEECCCSSCCCEEEEEEBS---SCTTC
T ss_pred             CCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecCCCccccccCCCCE-EEEEeCcccCCCCEEEEcccC---CCCce
Confidence            47888763  345678999999999999999998742        12221 334443   233444332121   12357


Q ss_pred             EEEEeCCCCCCc
Q psy17207         73 ITWMVSSYTPLE   84 (123)
Q Consensus        73 L~w~~~s~~pi~   84 (123)
                      |.|.+.+..|..
T Consensus       135 l~Cl~~~f~P~i  146 (208)
T 4ei6_A          135 SVCLFTDFDSQT  146 (208)
T ss_dssp             EEEEEESCCTTC
T ss_pred             EEEEeeccCCce
Confidence            889987766633

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=97.46  E-value=0.00015  Score=46.84  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+.+..+  +....|+|.+++.+|+|.|.|.+.+.
T Consensus        71 ~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  106 (127)
T 1i3u_A           71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred             CeEEEEEcCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            69988743  45778999999999999999999875

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=97.46  E-value=9.1e-05  Score=46.41  Aligned_cols=27  Identities=15%  Similarity=0.218  Sum_probs=23.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +....|.|.+++.+|+|.|.|.+.|..
T Consensus        53 ~~~~~l~I~~v~~~dsG~Y~C~~~n~~   79 (105)
T 2vsd_A           53 QDAAEFSFAVTNLEDAGTYQCRYQVSE   79 (105)
T ss_dssp             CSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred             CCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            456789999999999999999999853

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=97.45  E-value=0.0033  Score=44.14  Aligned_cols=72  Identities=13%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEE--EEEEeccCCCceeec-CCCCCCCCeEEEEEEeCCCCCCcceEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELSGKPNPAIFRS-HPQGRLPNSYNITWMVSSYTPLEEFKIKY   90 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~i~l~~~P~p~~~~~-~~~~~~~~~~~L~w~~~s~~pi~~y~v~y   90 (123)
                      -..|.|++++  |.|.|.|.+.-.-...++  .|.|+..|.-+.+.. +.....+..++|.|.+.+..|.....|.+
T Consensus        51 w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~l  125 (192)
T 1zxq_A           51 WKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFL  125 (192)
T ss_dssp             EEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEE
T ss_pred             eEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEE
Confidence            3579999998  789999999976555444  566667777665552 22334688999999999988887764443

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=97.44  E-value=9.6e-05  Score=47.81  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~  101 (127)
T 3cx5_J           65 KDRLSITRDTSKNQFFLKLNSVTTEDTATYYCARSEY  101 (127)
T ss_dssp             TTTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CCcEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            368877643  56778999999999999999999874

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=97.44  E-value=9e-05  Score=49.04  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=31.8

Q ss_pred             EEEEEcccCC-CCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207         18 HTLMIRKVVA-SDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus        18 ~~L~I~~v~~-~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .+|+|.+++. +|+|+|+|.+.+.....+..++|...
T Consensus        78 aSL~i~~v~~~sD~G~YtC~v~~~~~~~~~~i~Lkv~  114 (127)
T 2jjs_C           78 ASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYR  114 (127)
T ss_dssp             CCEEEEHHHHHTSCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEcccccccCCcEEEEEEEeCCceEEEEEEEEEE
Confidence            6899999998 79999999999998888888887753

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=97.43  E-value=0.0005  Score=43.97  Aligned_cols=70  Identities=10%  Similarity=0.056  Sum_probs=44.2

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcC-CCCCCceeeeeccccccccceeeeeeec
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIP-GNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +.|.+|..... .....+++.|.|.+.  ++.+|..|.|+|+... .....|..+...........+.|.+|.+
T Consensus        16 ~~P~~P~~l~~-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p   88 (124)
T 1wis_A           16 ELPGPPTNLGI-SNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP   88 (124)
T ss_dssp             CCCCCCEEEEE-ESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCT
T ss_pred             CCCccCCCCEE-EEecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCC
Confidence            35666654422 223578999999863  5689999999999742 2346797765432233445566666544

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=97.43  E-value=0.00017  Score=47.31  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+++..+  +....|+|.+++.+|+|.|.|.+.+.
T Consensus        66 ~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~  101 (134)
T 1zvh_A           66 GRFTVSLDNAENTVYLQMNSLKPEDTALYYCAAARQ  101 (134)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             CcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            68988743  55778999999999999999999875

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=97.42  E-value=0.00017  Score=46.58  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..+  +....|+|++++.+|+|.|.|.+.+.
T Consensus        65 ~~R~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  101 (127)
T 1mqk_H           65 KGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHEY  101 (127)
T ss_dssp             BTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            368988643  45678999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	5e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	5e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-04
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	8e-04
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	9e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.001
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.002
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.004
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 5e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +  ET  R  +ET   R    +      D G Y+    NP+G+ +  L + 
Sbjct: 77  LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 6e-07
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS--GKPNP 56
           +++ +E   +E   +   L I        G Y+    N +G  +A + L+   KP+P
Sbjct: 39 KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (89), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGKPNP 56
          + +    G+ + L I +V   D G Y+  A N  G      +L ++    P
Sbjct: 47 KYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-05
 Identities = 7/44 (15%), Positives = 13/44 (29%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
                ++     L I     +  G Y CE +       +   L+
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.4 bits (86), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L+I+ V   D G Y C ATN  G       + 
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-05
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK---HRAYLELSG 52
             +  +     L ++ V  SD G Y C+  +          +L + G
Sbjct: 44 YIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 5e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 6   TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
           TE         +  L I+ V  SD G Y+C   +   +  A +EL  + +P  + +  +
Sbjct: 69  TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYWINPGR 126

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 2   RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L+  E     +R     + I K   +  GNY CE T          +L 
Sbjct: 52  HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 6e-05
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
              + R    +L++  VV SD GNY+C   N  G       L 
Sbjct: 52 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 15/44 (34%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
                      L IR V  +D   Y C A N  G+  A + L 
Sbjct: 53 DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 11  METRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNPAIFRSHPQ 64
                    L + +    + GNY+  A NP G+  A +  +   NP  F  +P+
Sbjct: 56  ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP--FEFNPE 107

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.2 bits (80), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 16/42 (38%)

Query: 10 IMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            +   S   L I+ V   D G Y CEA N  G+      + 
Sbjct: 47 TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 16/34 (47%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           T  I  V ASD GNYS    N  GK  A   L+
Sbjct: 55 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 88

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 8   RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             +  T      L IR V   D G Y+C A N +G       L+
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 7e-04
 Identities = 7/42 (16%), Positives = 12/42 (28%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG 42
                E ++  +R    +  +      D G Y C      G
Sbjct: 43 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG 84

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 8e-04
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 1   MRLETTERRIMETRGSRHTLMIRKVVASDF-GNYSCEATNPMGKHRAYLELSGK 53
           +   +  R  + +   R  L I  +      G Y C  T+  G  +A + L  +
Sbjct: 48  LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 9e-04
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          +      R  +   G +H L+I     +D   YS   T      +  ++L
Sbjct: 40 IIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
            L   K+V  D G Y C A N  G   A  EL+
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
           +L I +V   D   Y+C+A N +G+     EL 
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL 50
          + L IR +  +D G Y CE          + ++
Sbjct: 56 NYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGKHRA 46
            L+   V A D G Y C+A N  G    
Sbjct: 67 GDLIFDPVTAFDSGEYYCQAQNGYGTAMR 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 8  RRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK--HRAYLELSGK 53
                  +   L+IR V   D  +   +A N  G+    A+L +  K
Sbjct: 51 IYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 18 HTLMIRKVVASDFGNYSCEATNPMGK 43
           +L+  +  ASD G+Y C A  P G 
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGV 83

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (72), Expect = 0.004
 Identities = 5/51 (9%), Positives = 12/51 (23%)

Query: 1  MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS 51
             +  +R       +  T  +          +SC     +      L  +
Sbjct: 43 RGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.2
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.17
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.16
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.12
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.09
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.08
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.04
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.04
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.98
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.97
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.92
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.88
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.86
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.84
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.81
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.79
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.79
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.78
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.77
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.76
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.75
d2avga1	110	Cardiac myosin binding protein C, different domain	98.75
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.74
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.72
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.71
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.7
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.69
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.65
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.64
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.63
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.62
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.56
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.56
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.55
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.53
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.48
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.43
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.42
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.42
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.37
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.37
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.36
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.35
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.35
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.33
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.33
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.3
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.26
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.23
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.21
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.17
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.09
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.98
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.94
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.94
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.94
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.91
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.88
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.87
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.56
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.56
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	97.46
d2crza1	97	Fibronectin type-III domain containing protein 3a,	97.43
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.34
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	97.32
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.31
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	97.31
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.3
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.29
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.29
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	97.28
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	97.22
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.18
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.17
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.14
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.14
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.13
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.12
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.11
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.11
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.11
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.1
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.09
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	97.09
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.08
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.07
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.07
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	97.06
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.04
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.03
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.02
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.01
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.01
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.0
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.97
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.96
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.91
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.9
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	96.9
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	96.89
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.88
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.88
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	96.87
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.87
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	96.86
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.84
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.82
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.82
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.81
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.81
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.8
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.8
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	96.79
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	96.79
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.79
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	96.7
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.69
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.65
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.64
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	96.61
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.57
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	96.56
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	96.56
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.54
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.52
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	96.52
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	96.52
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	96.52
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.49
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.48
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.46
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.44
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.43
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.38
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.38
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.36
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.35
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.33
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.29
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	96.29
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.28
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	96.27
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.27
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.26
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.11
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.09
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.08
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.06
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.06
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.04
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.0
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.99
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.86
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.85
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.79
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	95.78
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	95.75
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.73
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	95.72
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	95.7
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.65
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	95.65
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.62
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.61
d2crma1	107	Fibronectin type-III domain containing protein 3a,	95.6
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	95.53
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.52
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	95.48
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.46
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	95.29
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	95.28
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.27
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	95.27
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	95.25
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	95.22
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.2
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.16
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	95.14
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	95.06
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.06
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.03
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	95.0
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.96
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.94
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	94.91
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.84
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	94.84
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	94.83
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.83
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	94.82
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.78
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.78
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	94.75
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.75
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.71
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.67
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.57
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.51
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	94.51
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	94.51
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.49
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	94.47
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.47
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	94.46
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.44
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.42
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.42
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.35
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	94.34
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.31
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	94.26
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	94.25
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.25
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.23
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.21
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.2
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.17
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.15
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.08
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	94.03
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	94.03
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	93.99
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	93.97
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.96
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	93.96
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.95
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.9
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.84
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.78
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.74
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.71
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	93.68
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.65
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.64
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	93.61
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	93.61
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.59
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	93.56
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.54
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.48
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	93.47
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.44
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	93.43
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.38
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	93.36
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.35
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	93.35
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	93.31
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.28
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	93.25
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.16
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	93.03
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	92.94
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.75
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	92.62
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	92.61
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	92.57
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	92.4
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	92.37
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	92.35
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	92.21
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	92.18
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.16
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	92.07
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.06
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	92.06
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.05
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	91.7
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	91.52
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	91.08
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	90.93
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	90.18
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	90.1
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	90.1
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	89.84
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	89.42
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	89.4
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	89.27
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	88.95
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	88.68
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	88.11
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	87.62
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	87.44
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	87.28
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	85.57
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	81.13

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=81.13  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=50.4

Q ss_pred             CccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE--eccCCCcee
Q psy17207          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL--SGKPNPAIF   59 (123)
Q Consensus         1 ~~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l--~~~P~p~~~   59 (123)
                      ++|..++|+.+...+..+.|.|.+++.+|+|.|+|.|+|.+|.+..++.|  .+.|.||.+
T Consensus        39 ~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~pP~g   99 (101)
T d2cqva1          39 KQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG   99 (101)
T ss_dssp             SBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCCCC
T ss_pred             eeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCCcCC
Confidence            35778899999888888999999999999999999999999999986555  457777643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.7e-11  Score=77.12  Aligned_cols=50  Identities=26%  Similarity=0.369  Sum_probs=44.9

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +..+.|+.+...+..+.|+|.++..+|+|.|+|+|+|.+|.+.+++.|.+
T Consensus        79 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          79 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             CSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            45568899888888999999999999999999999999999999888764

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.17  E-value=3.1e-11  Score=73.82  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=46.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+...+..+.|.|.+++..|+|.|+|+|+|.+|+++.++.|..
T Consensus        42 ~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          42 GAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             SCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            567888998888888899999999999999999999999999999888754

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.16  E-value=7.2e-12  Score=77.31  Aligned_cols=51  Identities=24%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.||.+...+..+.|.|.++...|+|.|+|+|.|.+|.+..++.|..
T Consensus        41 ~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   91 (97)
T d1koaa1          41 ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV   91 (97)
T ss_dssp             ECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEE
T ss_pred             ccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEE
Confidence            567788998887788899999999999999999999999999998876654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.12  E-value=5.5e-11  Score=72.45  Aligned_cols=52  Identities=37%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             CccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         1 ~~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ++|..+.|+.+...+..+.|.|.+++..|+|.|+|+|.|.+|.+..++.|..
T Consensus        38 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          38 QVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI   89 (91)
T ss_dssp             STTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEEC
T ss_pred             cccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEE
Confidence            3577889999888888999999999999999999999999999998887754

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.09  E-value=1.4e-10  Score=71.89  Aligned_cols=51  Identities=22%  Similarity=0.358  Sum_probs=44.0

Q ss_pred             ccccCCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETR-GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+... ...++|.|.+++..|.|.|+|+|+|.+|.+..++.|..
T Consensus        48 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V   99 (102)
T d1fhga_          48 PVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV   99 (102)
T ss_dssp             ECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEE
Confidence            5778899988654 44778999999999999999999999999999887754

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.2e-10  Score=70.57  Aligned_cols=48  Identities=25%  Similarity=0.447  Sum_probs=42.3

Q ss_pred             cCCCEEEEEcCCEEEEEEcccC-CCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          5 TTERRIMETRGSRHTLMIRKVV-ASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.||.+...+..+.|.|.++. ..|+|.|+|+|.|.+|.+...+.|.+
T Consensus        52 ~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          52 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             GGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            3468888888889999999998 57999999999999999999888764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.4e-10  Score=71.24  Aligned_cols=55  Identities=25%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             ccccCCCEEEE--Ec--CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec--cCCC
Q psy17207          2 RLETTERRIME--TR--GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG--KPNP   56 (123)
Q Consensus         2 ~l~~d~R~~i~--~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~--~P~p   56 (123)
                      +|..+.++.+.  ..  ...+.|.|.+++..|+|.|+|+|+|.+|.++.++.|..  +|.|
T Consensus        42 ~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          42 PLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             ECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             ccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCCC
Confidence            45667776543  22  23467999999999999999999999999999888774  5554

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.04  E-value=3.3e-10  Score=69.70  Aligned_cols=51  Identities=22%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             ccccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..++|+.+. ..+..+.|.|.++...|.|.|+|+|+|.+|.+..++.|..
T Consensus        44 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          44 KIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   95 (98)
T ss_dssp             ECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEE
Confidence            56777786654 4566789999999999999999999999999998877764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4.2e-10  Score=70.15  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             ccccCCCEEEEE-----cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207          2 RLETTERRIMET-----RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         2 ~l~~d~R~~i~~-----~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      +|.+++++.+..     ....+.|.|.+++..|+|.|+|.|+|.+|++..++.|...
T Consensus        41 ~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~   97 (103)
T d1wwbx_          41 ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM   97 (103)
T ss_dssp             EECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCS
T ss_pred             EeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEE
Confidence            456667765532     1224579999999999999999999999999999988764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.4e-10  Score=69.72  Aligned_cols=55  Identities=25%  Similarity=0.250  Sum_probs=42.7

Q ss_pred             ccccCCCEEEEEc-------CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEeccCCC
Q psy17207          2 RLETTERRIMETR-------GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGKPNP   56 (123)
Q Consensus         2 ~l~~d~R~~i~~~-------~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~P~p   56 (123)
                      +|..++++.+...       ...+.|.|.++...|+|.|+|+|+|.+|.+.+++.|.....|
T Consensus        40 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          40 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             ECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCT
T ss_pred             EccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            4666776654321       134679999999999999999999999999999998764333

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.92  E-value=7.3e-10  Score=67.27  Aligned_cols=47  Identities=32%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+.|+.+.    .+.|.|.++...|+|.|+|+|+|.+|.+..++.|..
T Consensus        41 ~i~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          41 PLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             ECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccccceeeee----eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            46777888875    247999999999999999999999999998877754

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.88  E-value=5e-10  Score=68.10  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207          1 MRLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus         1 ~~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      ++|.+++||.+...+..+.|.|.+++..|+|.|+|.|.|..+++...
T Consensus        39 ~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~sa~l~   85 (89)
T d1tiua_          39 QPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSAANLK   85 (89)
T ss_dssp             CCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCCEEEE
T ss_pred             eecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEEEEEE
Confidence            46788999999998999999999999999999999999987765543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.86  E-value=4.4e-10  Score=69.15  Aligned_cols=37  Identities=32%  Similarity=0.521  Sum_probs=33.5

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..++|.|.+++.+|+|.|+|+|+|.+|.+..++.|..
T Consensus        60 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            4568999999999999999999999999999888754

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.84  E-value=3.6e-09  Score=64.04  Aligned_cols=43  Identities=28%  Similarity=0.379  Sum_probs=36.4

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .++|+.+..    ..|.|.+++..|+|.|+|+|+|.+|.+...+.|.
T Consensus        45 ~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~   87 (89)
T d1biha4          45 SGGRATVTD----SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ   87 (89)
T ss_dssp             CSSSEEEET----TEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccccEEEee----eeEEECCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            346777652    3699999999999999999999999999887775

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2e-09  Score=65.71  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             EEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEE-EEEe
Q psy17207         12 ETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAY-LELS   51 (123)
Q Consensus        12 ~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~-i~l~   51 (123)
                      ...+..++|.|.+++.+|+|.|+|+|.|..|.+.+. ..|.
T Consensus        54 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          54 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV   94 (96)
T ss_dssp             ETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             EeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEE
Confidence            333445689999999999999999999999997654 4554

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.4e-09  Score=63.27  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=34.4

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ....+.|+|.+++.+|+|.|+|+|.|..|..+.+++|.
T Consensus        51 ~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~   88 (90)
T d1gsma1          51 DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   88 (90)
T ss_dssp             ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEE
Confidence            34578999999999999999999999999999988775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.79  E-value=2.6e-09  Score=64.79  Aligned_cols=36  Identities=31%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+|+|.|+|+|+|.+|.+..++.|..
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          54 EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII   89 (91)
T ss_dssp             SSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            468999999999999999999999999998877753

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-09  Score=68.39  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++.+|+|.|+|+|.|.+|....++.|..
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  102 (113)
T d2dava1          67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV  102 (113)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEE
Confidence            457999999999999999999999999998777664

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.6e-09  Score=62.22  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ....+.|.|.+++.+|+|.|+|+|.|..|..+.+++|..
T Consensus        50 ~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            356789999999999999999999999999999887753

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.5e-08  Score=61.88  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=38.0

Q ss_pred             ccCCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE-EEEEEe
Q psy17207          4 ETTERRIME-TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR-AYLELS   51 (123)
Q Consensus         4 ~~d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~~i~l~   51 (123)
                      ..++|+.+. ..+..++|.|.+++.+|+|.|+|+|.|..|... +++.|.
T Consensus        45 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~   94 (97)
T d1epfa1          45 PNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK   94 (97)
T ss_dssp             CBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEE
Confidence            345788765 345678999999999999999999999999754 455554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.1e-09  Score=63.37  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=34.5

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i   48 (123)
                      .++.+...+..+.|.|.+++.+|+|.|+|+|.|..+++..++
T Consensus        46 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~a~l~V   87 (90)
T d1x44a1          46 SRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSV   87 (90)
T ss_dssp             CSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEEEEEEEEE
T ss_pred             ccEEEEEeCCccEEEECccccccCEEEEEEEecceEEEEEEE
Confidence            457788888899999999999999999999999655544443

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=9.7e-09  Score=64.04  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=33.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .+.|.|.+++..|+|.|+|.|+|..|.+.+++.|.+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V  106 (110)
T d2avga1          71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV  106 (110)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEE
Confidence            467999999999999999999999999999988875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.74  E-value=7.4e-09  Score=64.01  Aligned_cols=37  Identities=32%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..+.|.|.+++..|+|.|+|+|+|.+|.+.+++.|.+
T Consensus        72 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            3568999999999999999999999999999887753

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=8.4e-09  Score=63.28  Aligned_cols=38  Identities=32%  Similarity=0.438  Sum_probs=33.9

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...+.|.|.+++.+|+|.|+|+|+|.+|.+..++.|..
T Consensus        60 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV   97 (100)
T ss_dssp             TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            34578999999999999999999999999999887754

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=7.3e-09  Score=62.13  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.|+|.+++..|+|.|+|.|+|.+|.+..++.|..
T Consensus        54 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          54 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            47999999999999999999999999999887754

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.70  E-value=5.4e-09  Score=64.05  Aligned_cols=45  Identities=31%  Similarity=0.547  Sum_probs=34.9

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      .++........+.|.|.+++.+|+|.|+|.|.|.+|.... ++.|.
T Consensus        50 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~   95 (97)
T d1biha3          50 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT   95 (97)
T ss_dssp             SSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEE
T ss_pred             eeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEE
Confidence            3344333444568999999999999999999999998764 66665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=8.2e-09  Score=62.95  Aligned_cols=49  Identities=31%  Similarity=0.520  Sum_probs=38.7

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEec
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELSG   52 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~~   52 (123)
                      +|..+.|+.+..  ..++|.|.+++.+|.|.|+|.|.|.+|...+ .+.|..
T Consensus        42 ~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          42 SLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             ECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             ecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            456677887764  3468999999999999999999999998864 344443

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.6e-08  Score=60.86  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=35.7

Q ss_pred             ccccCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207          2 RLETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus         2 ~l~~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      +|..++++.+..  ....+.|.|.+++.+|+|.|+|.|+|.+|...+ .+.|
T Consensus        36 ~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l   87 (91)
T d1rhfa1          36 VVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL   87 (91)
T ss_dssp             ECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEE
T ss_pred             ccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEE
Confidence            345555655443  233568999999999999999999999998643 3444

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2e-08  Score=59.91  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=32.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ...|+|.+++.+|+|.|+|.|.|..|.....+.|..
T Consensus        44 ~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V   79 (84)
T d2nxyb2          44 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV   79 (84)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECE
T ss_pred             eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEE
Confidence            357999999999999999999999999999887765

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2e-08  Score=61.15  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=35.5

Q ss_pred             ccccC-CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207          2 RLETT-ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus         2 ~l~~d-~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      +|..+ .|+.+...+..+.|.|.++...|+|.|+|+|.|..+.+.
T Consensus        45 ~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~s~~   89 (94)
T d1pd6a_          45 EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE   89 (94)
T ss_dssp             EECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTEEECCE
T ss_pred             cceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeEEEEEE
Confidence            45544 577888778889999999999999999999998654443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.4e-08  Score=60.64  Aligned_cols=36  Identities=19%  Similarity=0.156  Sum_probs=33.1

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      ++|.|.+++.+|+|.|+|+|.|..|....++.|.+.
T Consensus        59 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~   94 (101)
T d1iray1          59 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV   94 (101)
T ss_dssp             TEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEE
Confidence            589999999999999999999999999998888753

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.9e-08  Score=62.22  Aligned_cols=35  Identities=26%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             EEEEEEcccCCCCCe-eEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~i~l~   51 (123)
                      .+.|+|.+++..|+| +|+|.|+|.+|.+++.+.|.
T Consensus        69 ~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          69 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             eEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            468999999999999 59999999999999999886

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.56  E-value=1.7e-08  Score=61.13  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=27.8

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      ..++|.|.+++.+|+|.|+|+|.|.+|.+.+
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          56 DEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             TSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            3468999999999999999999999998764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.56  E-value=1.3e-08  Score=63.21  Aligned_cols=42  Identities=36%  Similarity=0.444  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLE   49 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~   49 (123)
                      +.|+.+.  ...+.|.|.+++.+|+|.|+|+|+|..|....++.
T Consensus        51 ~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v~   92 (105)
T d1cs6a2          51 DGRRFVS--QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVF   92 (105)
T ss_dssp             CSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEE
T ss_pred             cceeeee--cCCCEEeecccccccCcEEEEEEEECCCCEEEEEE
Confidence            4444443  23458999999999999999999999999887653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6e-08  Score=60.40  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=31.0

Q ss_pred             ccccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207          2 RLETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus         2 ~l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      +|..+.++.+...   +.|.|.++..+|+|.|+|.|.|..|...
T Consensus        45 ~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~g~~   85 (103)
T d1iray2          45 PLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQ   85 (103)
T ss_dssp             ECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             cccCCCcEEEecC---CEEEEcccccccCcEEEEEEEECcCCEE
Confidence            4555555444433   3799999999999999999999887543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.7e-09  Score=64.70  Aligned_cols=47  Identities=32%  Similarity=0.478  Sum_probs=37.6

Q ss_pred             CCEEEEE----cCCEEEEEEcccCCCC-CeeEEEEEEcCCceeEEEEEEecc
Q psy17207          7 ERRIMET----RGSRHTLMIRKVVASD-FGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus         7 ~R~~i~~----~~~~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .|+.+..    .+..+.|.|.+++..| .|.|+|+|+|.+|.+...+.|...
T Consensus        54 ~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          54 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCS
T ss_pred             eeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEE
Confidence            5665532    2234679999999999 699999999999999999988753

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.4e-08  Score=60.82  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ++|+.+...   +.|.|.+++.+|+|.|+|+|.|..|....+..|
T Consensus        41 ~~~~~~~~~---~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1          41 SPKYGLMGR---KNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             SSSBCCTTT---TCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eeeeeccee---eEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            456665433   469999999999999999999999987765433

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.5e-08  Score=61.17  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE--EEEEe
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA--YLELS   51 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~--~i~l~   51 (123)
                      ...+.|.|.+++.+|+|.|+|+|+|.+|.+..  .++|.
T Consensus        64 ~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~  102 (110)
T d1f97a2          64 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD  102 (110)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEE
T ss_pred             ecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEE
Confidence            34567999999999999999999999998875  34443

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.1e-08  Score=59.35  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CCEEEEEEcccCCCCCe-eEEEEEEcCCceeEEEEEEe
Q psy17207         15 GSRHTLMIRKVVASDFG-NYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G-~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ...+.|.|.++...|.| .|+|+|+|.+|.+..++.|.
T Consensus        53 ~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          53 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             ccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            45678999999999999 69999999999999987764

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.6e-08  Score=59.01  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ...+.|+|++++.+|+|.|+|.|.|..|..+..+.|
T Consensus        57 ~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~~~l~V   92 (93)
T d1ccza1          57 TVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV   92 (93)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEE
T ss_pred             CCeeEEEEEecChhhCEEEEEEEECCCcEEEEEEEE
Confidence            445789999999999999999999999988877665

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7.5e-08  Score=58.98  Aligned_cols=34  Identities=18%  Similarity=0.419  Sum_probs=30.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ++|.|.+++.+|+|.|+|.|.|.+|.+...+.|.
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEE
T ss_pred             ceEEEecccccceeeEEEEEEECCCCEEEEEEEE
Confidence            4799999999999999999999999998865554

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=2.3e-07  Score=56.91  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeE--EEEEEe
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHR--AYLELS   51 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~--~~i~l~   51 (123)
                      .+.|+.+..+   ++|+|++++.+|+|.|+|.+.|..|...  .++.|.
T Consensus        50 ~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~   95 (98)
T d1hnga1          50 KSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR   95 (98)
T ss_dssp             SSTTEEECTT---SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEE
T ss_pred             CCCeEEECCC---ccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEE
Confidence            4556666533   4799999999999999999999999874  455554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=2e-07  Score=56.91  Aligned_cols=33  Identities=18%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ++|.|.+++.+|.|.|+|.|.|..|.....+.|
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v   97 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI   97 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEE
T ss_pred             CEEEEeECCccCCEEEEEEEEECCCCEEEEEEE
Confidence            479999999999999999999999998876544

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.9e-07  Score=57.38  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      ...|.|.+++.+|+|.|+|.|.|.+|.... ++.|
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l   98 (104)
T d2aw2a1          64 FFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL   98 (104)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             EEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEE
Confidence            456999999999999999999999998654 3443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.35  E-value=1.3e-07  Score=57.17  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEEEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i   48 (123)
                      +.|.|.+++..|+|.|+|.|.|..|......
T Consensus        56 ~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~   86 (92)
T d1epfa2          56 NYLQIRGIKKTDEGTYRCEGRILARGEINFK   86 (92)
T ss_dssp             SCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             eeEEECCCCHHhCEEEEEEEEECcCCEEEEE
Confidence            4699999999999999999999888665543

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.35  E-value=7.4e-08  Score=58.62  Aligned_cols=34  Identities=32%  Similarity=0.427  Sum_probs=28.3

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLEL   50 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l   50 (123)
                      ...|.|..+...|+|.|+|+|+|.+|.+.+ .+.|
T Consensus        61 ~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            357899999999999999999999998753 4444

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.5e-08  Score=59.99  Aligned_cols=31  Identities=39%  Similarity=0.552  Sum_probs=28.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAY   47 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~   47 (123)
                      .+.|.|.+++..|+|.|+|.|.|.+|++..+
T Consensus        65 ~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          65 TGELVFDPLSASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             TCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             ccceEECCCCcccCcEEEEEEEECCCceEEE
Confidence            4679999999999999999999999998765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.33  E-value=4.3e-07  Score=54.53  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCceeEE-EEEEe
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMGKHRA-YLELS   51 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-~i~l~   51 (123)
                      .....|.|.+++.+|+|.|+|.|.|..|...+ .+.|.
T Consensus        46 ~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~   83 (88)
T d2fcba2          46 RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTIT   83 (88)
T ss_dssp             SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEE
Confidence            34568999999999999999999999997653 34444

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.2e-07  Score=55.67  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.9

Q ss_pred             EEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207         20 LMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus        20 L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +.+.+++.+|+|.|+|+|.|.+|++...+.|..
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V   81 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGEVTREVTVNV   81 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeeeccccCCCCEEEEEEEcCCCEEEEEEEEEE
Confidence            467788999999999999999999998877764

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4e-07  Score=55.37  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=28.5

Q ss_pred             cccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCce
Q psy17207          3 LETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGK   43 (123)
Q Consensus         3 l~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~   43 (123)
                      |..+.|+....   ..+|.|.+++.+|+|.|+|.|.|..+.
T Consensus        48 l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          48 AGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             SSCCCEEEEEE---SSEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             ccceeeEEecC---CCEEEECCCChhcCEEEEEEECCcccc
Confidence            44445544433   348999999999999999999998644

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.5e-07  Score=53.78  Aligned_cols=39  Identities=18%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEE---EEEEeccC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRA---YLELSGKP   54 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~---~i~l~~~P   54 (123)
                      ....|.|.+++.+|+|.|+|.|.|..|...+   .|.|.+.|
T Consensus        47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          47 ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence            3467999999999999999999999887653   45555544

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=1.3e-06  Score=54.77  Aligned_cols=46  Identities=26%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             CCEEEEE---cCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMET---RGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~---~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      .|..+..   .....+|+|++++.+|+|.|+|.+.|..|..+..+.|.+
T Consensus        67 ~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V  115 (126)
T d1pkoa_          67 GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV  115 (126)
T ss_dssp             TSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeEEEeeccccCCeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEE
Confidence            4555542   233678999999999999999999999999998888775

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.17  E-value=6.7e-07  Score=56.01  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             EEEEEEcccCCCCCe---eEEEEEEcCCceeEEEEEEeccC
Q psy17207         17 RHTLMIRKVVASDFG---NYSCEATNPMGKHRAYLELSGKP   54 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G---~YtC~A~N~~G~~~~~i~l~~~P   54 (123)
                      .++|.|.+++..|+|   .|+|.|.|.+|.+...+.+...+
T Consensus        62 ~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~i~  102 (111)
T d1biha2          62 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIK  102 (111)
T ss_dssp             TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEEC
T ss_pred             ccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEEeC
Confidence            457999999999887   59999999999999887666543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.09  E-value=1.7e-06  Score=51.94  Aligned_cols=29  Identities=21%  Similarity=0.276  Sum_probs=26.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      ...|.|.+++.+|+|.|+|+|.|..|...
T Consensus        50 ~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          50 NSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             CCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ccccEECccceeccceEEEEEEeCCCCeE
Confidence            45799999999999999999999998755

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.4e-06  Score=51.47  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=29.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ....|.|.+++.+|+|.|.|.|.|..+++...+.|
T Consensus        46 ~~~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~V   80 (82)
T d1f2qa1          46 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEV   80 (82)
T ss_dssp             CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEE
T ss_pred             ccceeEECCCChhhCCcEEEEecCCCCcccEEEEE
Confidence            34679999999999999999999987777665554

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=51.15  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYL   48 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i   48 (123)
                      ....|.|.+++.+|+|.|+|.|.|..+++...+
T Consensus        50 ~~~~l~i~~~~~~d~G~Y~C~a~~s~~S~~v~L   82 (84)
T d1fnla1          50 QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQL   82 (84)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEE
T ss_pred             cceeeEecCCcccCCEEEEEEccCCCccccEEE
Confidence            356899999999999999999999877655444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.2e-06  Score=51.86  Aligned_cols=46  Identities=17%  Similarity=0.342  Sum_probs=36.4

Q ss_pred             CCEEEEEc---CCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          7 ERRIMETR---GSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         7 ~R~~i~~~---~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      +|..+...   .....|+|.+++.+|+|.|.|.+.|..|.....+.|.+
T Consensus        74 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          74 GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             TTEEECCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cceEEEccCCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            46665321   23457999999999999999999999998888877754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.1e-06  Score=52.93  Aligned_cols=36  Identities=11%  Similarity=0.029  Sum_probs=30.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ..+.|+|..+..+|.|.|+|.|+|.+|.....+.+.
T Consensus        58 ~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~   93 (103)
T d1iama1          58 AEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN   93 (103)
T ss_dssp             EEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEE
T ss_pred             ceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeee
Confidence            356899999999999999999999999887665544

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.7e-06  Score=48.79  Aligned_cols=29  Identities=21%  Similarity=0.267  Sum_probs=23.2

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +.++|.....+|+|.|+|+|+|.+|...+
T Consensus        49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S   77 (85)
T d1rhfa2          49 SPSVLNVTGVTQSTMFSCEAHNLKGLASS   77 (85)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEETTEEEEC
T ss_pred             cceEEecCCccccEEEEEEEEcCCCcEEE
Confidence            34566666778999999999999997653

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.88  E-value=1.6e-06  Score=51.49  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLEL   50 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l   50 (123)
                      ....|.|.+++.+|+|.|+|.|.|..+++...+.|
T Consensus        49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v~l~V   83 (85)
T d2fcba1          49 HTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTV   83 (85)
T ss_dssp             CCSSEEEEECCGGGCEEEEEECTTSBCCCCEEEEE
T ss_pred             cccceEEeeccccCCcEEEEECCCCcccccEEEEE
Confidence            45679999999999999999999988777666555

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.7e-06  Score=52.82  Aligned_cols=43  Identities=19%  Similarity=0.380  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCc-eeEEEEEEe
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMG-KHRAYLELS   51 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G-~~~~~i~l~   51 (123)
                      .+|..+..+   ++|.|.+++.+|+|.|+|...+.-+ ..++++.|.
T Consensus        62 ~gR~~l~~n---gSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          62 SGREIIYSN---GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             CSSEEECTT---SCEEECSCCGGGCEEEEEEEEETTEEECCCCEEEC
T ss_pred             eeEEEEccc---ccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEE
Confidence            468887543   4899999999999999999987754 444555553

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=4.1e-05  Score=47.14  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=26.4

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      +|+.+..  .....+|.|++++.+|+|.|.|...+.-
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          68 ERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             TCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC--
T ss_pred             eEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECC
Confidence            5776642  2334679999999999999999998854

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=5.1e-05  Score=46.13  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      .|..+...+ ..+|.|++++.+|+|.|.|...+.-+..
T Consensus        55 ~r~~~~~~g-~~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          55 NRTIFDITN-NLSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TTEEEESTT-TTEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             eeeeeccCC-cEEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            466665443 4589999999999999999887654443

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.46  E-value=0.00019  Score=42.81  Aligned_cols=44  Identities=14%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             EeccCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCC
Q psy17207         50 LSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        50 l~~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~   95 (123)
                      |.++|.||......  ...+++.|+|.++  ++.||..|.|+|+....
T Consensus         2 V~dvP~~P~~~~v~--~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~   47 (100)
T d1cfba1           2 VQDVPNAPKLTGIT--CQADKAEIHWEQQGDNRSPILHYTIQFNTSFT   47 (100)
T ss_dssp             CCCCCCCCEEEEEE--ECSSEEEEEEECCCCTTSCCCEEEEEEEESSS
T ss_pred             cccCCCcCcCcEEE--EcCCEEEEEEcCCcccccceEEEEEEEecCCC
Confidence            34678888766432  3467899999964  46899999999997643

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00015  Score=43.50  Aligned_cols=50  Identities=10%  Similarity=0.202  Sum_probs=35.4

Q ss_pred             CCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++   ++.+|+.|.|+|+...  ...|....    ....+.+.|.+|.+
T Consensus        15 ~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~--~~~~~~~~----~~~~~~~~v~~L~p   67 (97)
T d2crza1          15 KAKEIQLRWGPPLVDGGSPISCYSVEMSPIE--KDEPREVY----QGSEVECTVSSLLP   67 (97)
T ss_dssp             CSSEEEEECCCCSCCTTSCCCEEEEEEECTT--SCCCEEEE----EESCSEEEEESCCT
T ss_pred             eCCEEEEEEeCCCcCCCCceeEEEEEEEcCc--CCceeEee----cCCceEEEEcCCCC
Confidence            468999999963   3579999999998764  35676543    23455677777655

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00011  Score=45.57  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....++...|+|++++.+|+|.|.|.+..
T Consensus        65 ~~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          65 TQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             TTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            4788887777788999999999999999998663

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.34  E-value=0.00014  Score=44.74  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             cCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          5 TTERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         5 ~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..+|++....++...|+|++++.+|+|.|.|.+.+
T Consensus        58 ~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          58 VPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            34788887677788999999999999999997654

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00084  Score=40.03  Aligned_cols=52  Identities=13%  Similarity=0.237  Sum_probs=36.7

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++...+|..|.|+|+.... ...|.+....   +..+...++.|.+
T Consensus        14 ~~~s~~vsW~~P~~~~i~~Y~i~y~~~~~-~~~~~~~~v~---~~~~~~~l~gL~P   65 (93)
T d1owwa_          14 QPNSHPIQWNAPQPSHISKYILRWRPKNS-VGRWKEATIP---GHLNSYTIKGLKP   65 (93)
T ss_dssp             CTTCEEEEEECCSSSCEEEEEEEEEETTC-SSCCEEEEEC---SSCCEEEECSCCS
T ss_pred             CCCEEEEEeecccccceeEEEEEEeeccc-cceeeeeccC---CCccEEEECCccc
Confidence            46899999998777789999999998743 4556665432   3445556666544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00026  Score=43.45  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEec
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELSG   52 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~   52 (123)
                      ..|+.+.  .......|+|.+++.+|+|.|.|.+...-......+.|.+
T Consensus        60 ~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          60 AGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEE
T ss_pred             cCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEE
Confidence            3566554  3344678999999999999999987654333344455544

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=0.00038  Score=41.59  Aligned_cols=64  Identities=5%  Similarity=0.053  Sum_probs=40.9

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      |.+|..... .....+++.|.|.++   ++.+|..|.|+|+....  ..|......  ....+.+.+..|.+
T Consensus         2 P~~P~~~~v-~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~--~~~~~~~~~--~~~~~~~~v~~L~~   68 (98)
T d1x5ya1           2 TSAPQHLTV-EDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGS--EEWVPANKE--PVERCGFTVKDLPT   68 (98)
T ss_dssp             CCCCEEEEE-EEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTC--CCCEESSSS--CBSSSEEEEECCCT
T ss_pred             CCCCcCcEE-EEccCCEEEEEEECCCcCCCCCceEEEEEEEecCc--ceeEEeeee--cCceeEEEECCCcC
Confidence            555543321 123578999999964   35789999999998754  568665432  33345566666654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.4e-05  Score=47.36  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=27.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeEEEEEEe
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHRAYLELS   51 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~   51 (123)
                      ...|.|.....+|.|.|+|+|+|.+|.....+.+.
T Consensus        62 ~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~   96 (106)
T d1zxqa1          62 TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHK   96 (106)
T ss_dssp             EEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEE
T ss_pred             eEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEec
Confidence            45688888888899999999999998765555443

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.00016  Score=44.40  Aligned_cols=34  Identities=35%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ++|++....+....|+|.+++.+|+|.|.|.+.+
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            4789888778889999999999999999997654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=4.7e-05  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.4

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ..+|+|++++.+|+|.|.|.+.|.
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~   89 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ   89 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC
Confidence            457999999999999999999774

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.29  E-value=0.00021  Score=44.42  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             CCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .+||++...  .....|+|.+++.+|+|.|.|......+
T Consensus        62 ~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTT
T ss_pred             ceEEEEEecCceeEEeeeecCccccccccceeeEecCCC
Confidence            369987643  3346899999999999999998765443

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00037  Score=41.00  Aligned_cols=63  Identities=11%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      |.||..... .....+++.|.|.++  ++.||..|.|+|+....   .|......  ......+.+.+|.+
T Consensus         1 P~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~---~~~~~~~~--~~~~~~~~i~~L~p   65 (93)
T d2vkwa2           1 PSAPKLEGQ-MGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSS---EWKPEIRL--PSGSDHVMLKSLDW   65 (93)
T ss_dssp             CCCCEEEEE-ECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTS---CCCCCEEE--CTTCCEEEECSCCT
T ss_pred             CCCCccCEe-EEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCc---ceeeeeec--cCCceEEEEecccc
Confidence            556655432 234578999999974  56899999999998743   44332211  12234456666544

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00061  Score=40.95  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=44.9

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCC-Cceeeeeccccccccceeeeeeec
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEP-SPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      .|.||..... .....+++.|.|.+.  ++.+|..|.++|+....... .|..............+.|..|.+
T Consensus        10 ~P~~P~~~~~-~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   81 (111)
T d1wisa1          10 LPGPPTNLGI-SNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP   81 (111)
T ss_dssp             CCCCCEEEEE-ESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCT
T ss_pred             CCcCCCCCEE-EEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCC
Confidence            4556543322 223578999999964  56899999999987654333 355555555555566667776654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.18  E-value=0.00021  Score=43.86  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....+....|+|++++.+|+|.|.|.+.+
T Consensus        58 ~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          58 PSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCSEEEEEECS
T ss_pred             CcceEeecCCCEeeeEehhhcccCCEeEEEEEeC
Confidence            3688887777888999999999999999998654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.17  E-value=0.00021  Score=44.02  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             CCEEE--EEcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          7 ERRIM--ETRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         7 ~R~~i--~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .|+.+  ...+....|+|++++.+|+|.|.|.+....+
T Consensus        61 ~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          61 GRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             cceEEEEcCCCCEEEEeecccccccCCCceEeCCCCCC
Confidence            34444  3345677899999999999999998776544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.14  E-value=0.00025  Score=43.81  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+...  ......+|+|.+++.+|+|.|.|.+...
T Consensus        58 ~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          58 NGRYTATLDADTKQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             ETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             cCccceeecCcccccccEEcccChhhCcccceeeecC
Confidence            3667664  3346778999999999999999988864

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.14  E-value=0.0002  Score=44.08  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+++...+....|+|.+++.+|+|.|.|.+..
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          59 PSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             CTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             ccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            4789888777788999999999999999997653

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.13  E-value=0.00031  Score=43.10  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....++...|+|++++.+|+|.|.|.+..
T Consensus        61 ~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          61 PSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            4788887778888999999999999999997653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00032  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             CCCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIME-TRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +.|+... ..+....|+|++++.+|+|.|.|.+.
T Consensus        69 ~~~~s~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          69 SKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             GGTEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEEECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence            3566654 44566789999999999999999764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00033  Score=42.80  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|++....+....|+|.+++.+|+|.|.|.+.
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          58 PARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            468888777788899999999999999999654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.11  E-value=0.00029  Score=43.38  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....++...|+|++++.+|+|.|.|.+..
T Consensus        60 ~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          60 PDRFSGSKSGTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             ccceeeeCCCCEeeeEEeeeccccCcceEEeecC
Confidence            3688887778889999999999999999997753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.11  E-value=0.00034  Score=42.74  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++.........|+|.+++.+|+|.|.|.+..
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          59 PDRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            4788887777889999999999999999997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00033  Score=43.38  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....+....|.|++++.+|+|.|.|.+..
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            4788887778889999999999999999998653

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.09  E-value=0.00033  Score=42.95  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++....+....|+|.+++.+|+|.|.|.+..
T Consensus        60 ~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          60 SRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            688888777888999999999999999997654

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00067  Score=40.43  Aligned_cols=65  Identities=8%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeecc-ccccccceeeeeee
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTG-TNQYQNRRLVRKIT  121 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~  121 (123)
                      .|.+|.....  ....+++.|.|..+   ++.||..|.|+|+....  ..|....... .......+.+.+|.
T Consensus         2 vP~~P~~~~~--~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~L~   70 (101)
T d2haza1           2 TPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE--EVWHSKWYDAKEASMEGIVTIVGLK   70 (101)
T ss_dssp             CCCCCEEEEE--EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTC--CCCEEEEEEHHHHHHHSEEEECSCC
T ss_pred             cCcCCccCEE--EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCC--cceeeeeeeeecccceeEEEecCCC
Confidence            4666654432  23467899999963   35799999999998754  4566554332 22233345555544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00054  Score=42.33  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=29.3

Q ss_pred             ccCCCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          4 ETTERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         4 ~~d~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ..++|+.+...  +....|.|.+++.+|+|.|.|.+...
T Consensus        57 ~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          57 VQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             SSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             cccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            35679988653  34677999999999999999987643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.07  E-value=0.00031  Score=43.00  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=28.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|++....++...|+|++++.+|+|.|.|.+.
T Consensus        60 ~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          60 ADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             ccceeeecCCCEEEEEehHheecccEEEeeecC
Confidence            368887777778899999999999999999764

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.07  E-value=0.00049  Score=42.35  Aligned_cols=35  Identities=23%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|++....++...|.|++++.+|+|.|.|.+.+.
T Consensus        61 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          61 SDRFSGSKSGNSASLTISGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cccEEEECCCCEeeEEeCcCccccCEEEEEeeecC
Confidence            46887777778899999999999999999987654

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00074  Score=40.87  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             cCCCceeecC-CCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         53 KPNPAIFRSH-PQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        53 ~P~p~~~~~~-~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +|.||..... .......++.|.|...  .+.++..|.|+|+....  ..|.........+......+.+|.+
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~~   74 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA--STWSQIPPEDTASTRSSFTVQDLKP   74 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTC--SSCEECCGGGGCSCCSEEEECSCCS
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeee--eeeeccccccccccccEEeeCCCcc
Confidence            5777764432 2234578899999963  35789999999998754  5677766666666666666666543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.04  E-value=0.00036  Score=42.74  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....+....|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          58 PSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            3688887777788999999999999999997653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.03  E-value=0.00044  Score=42.62  Aligned_cols=32  Identities=28%  Similarity=0.569  Sum_probs=28.3

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++....+....|+|.+++.+|+|.|.|.+.
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          60 SRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            68887767778899999999999999999765

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.02  E-value=0.00029  Score=43.27  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=26.1

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|+.+...+....|+|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          58 ASLIITEDRKSSTLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             CEEEECTTCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ceeeecccCCeeeehhcccccCCceEEEEEEeC
Confidence            344454556778899999999999999997753

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00016  Score=43.79  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=27.8

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..  .....+|+|.+++.+|+|.|.|.++..
T Consensus        65 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CCCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeC
Confidence            46777753  234667999999999999999988754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.01  E-value=0.00047  Score=42.57  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ++|+.....+....|+|++++.+|+|.|.|.+..
T Consensus        63 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          63 PARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcEEEecCCCchhcccccccccCCceEEEEECC
Confidence            4788887777888999999999999999997553

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.00  E-value=0.00042  Score=42.49  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....+....|+|++++.+|+|.|.|.+..
T Consensus        59 ~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          59 PDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            3688887777788999999999999999997543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.97  E-value=0.00048  Score=42.44  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +.|+.....+....|.|++++.+|+|.|.|.+.+
T Consensus        63 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTN   96 (111)
T ss_dssp             CTTEEEECSSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCcEEEecCCCEEEEEEcccccccCccEEEeecC
Confidence            4688887777889999999999999999997654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.96  E-value=0.00043  Score=41.27  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=27.4

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ++|+...  ......+|+|++++.+|+|.|.|.+..
T Consensus        43 ~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          43 DGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             ETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            4678664  345567899999999999999998764

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00024  Score=43.18  Aligned_cols=53  Identities=11%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++  ++.+|.+|.|+|+...   ..|....... ....+.+.+..|.+
T Consensus        24 ~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~---~~~~~~~~~~-~~~~~~~~i~~L~p   78 (108)
T d1wf5a1          24 VERRAINLTWTKPFDGNSPLIRYILEMSENN---APWTVLLASV-DPKATSVTVKGLVP   78 (108)
T ss_dssp             SSTTEEEEECCCCCCCSSCEEEEEEEEECTT---CCCEEEESSC-CTTCCEEEEESCCT
T ss_pred             ccCCEEEEEEECCCCCCCccEEEEEEEEecc---CCceEEeeee-cCCccEEEECCCCC
Confidence            4578999999964  5678999999999754   3565554433 23344566666654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.91  E-value=0.00064  Score=41.98  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|++....+....|.|++++.+|+|.|.|.+.
T Consensus        65 ~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          65 PDRFTGSGSGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CccEEEeCCCCeEeEEecccccCCCeEEEeccc
Confidence            468887777778899999999999999999654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.90  E-value=0.00086  Score=40.57  Aligned_cols=35  Identities=34%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+......+...|+|.+++.+|+|.|.|.+...
T Consensus        56 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          56 PQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCcEEECCCCCccCceEcCcchhHCceEEeeecCC
Confidence            36777777778889999999999999999976543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.002  Score=38.94  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=27.2

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      .+|+.+..  ......|+|.+++.+|+|.|.|.....
T Consensus        56 ~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          56 TSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             STTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             eeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecC
Confidence            36776643  355678999999999999999977643

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00092  Score=40.49  Aligned_cols=55  Identities=13%  Similarity=0.219  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.+.  ++.+|..|.|+|+.... ...|........ .......|.+|.+
T Consensus        22 ~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~L~p   78 (108)
T d1x4za1          22 ASETSVYVTWIPRGNGGFPIQSFRVEYKKLKK-VGDWILATSAIP-PSRLSVEITGLEK   78 (108)
T ss_dssp             CCSSEEEEECCCCCCTTSCCCEEEEEEEESSS-CCCCEEEEEEEC-TTCCEEEEESCCT
T ss_pred             ccCCEEEEEEECCCCCCCccEEEEEEEEecCC-CCceEEEEEeec-CCccEEEECCCCC
Confidence            3578999999863  46799999999998643 456765543332 2233455555543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.88  E-value=0.00062  Score=41.86  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....++...|.|.+++.+|+|.|.|.+.+
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          59 PKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            4677776666788999999999999999997654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0007  Score=41.49  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=25.7

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..  .....+|+|.+++.+|+|.|.|...
T Consensus        63 ~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~   96 (113)
T d1smoa_          63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIY   96 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CeEEEEEECCCCEEEEEEccCCcccCceEEEEEE
Confidence            5888764  3445679999999999999999653

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00015  Score=44.66  Aligned_cols=70  Identities=17%  Similarity=0.134  Sum_probs=43.0

Q ss_pred             EEEeccCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         48 LELSGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        48 i~l~~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +.|...|.||.-... .....+++.|.|.+.  +..+|..|.|+|+... ....|..+...   ...+.+.|..|.+
T Consensus        10 ~~~~~~P~pP~~~~v-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~---~~~~~~~v~~L~p   81 (117)
T d1uema_          10 YDLSDLPGPPSKPQV-TDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQS-VSNSWQTVANH---VKTTLYTVRGLRP   81 (117)
T ss_dssp             CCSCCSCBCCCCCEE-EEECSSCEEEECCCCBCSSSCCCEEEEEEEETT-TEEEEEEEEEE---ECSSEEEECSCCT
T ss_pred             ceeCccCcCCCCCEE-EEccCCEEEEEEECCCcCCCCeEEEEEEEeccC-CceeeEEeccc---cccccceECCCCC
Confidence            344556766543321 123578999999963  5678999999998864 23456655432   2344556666554

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.87  E-value=0.00067  Score=41.66  Aligned_cols=32  Identities=31%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++....+....|.|.+++.+|+|.|.|.+.
T Consensus        58 ~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEE
T ss_pred             ceeeecCCCCEeeeeEcCccccCCceEEEEee
Confidence            68988777788899999999999999999765

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.0021  Score=38.54  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEEe--CCCCCCcceEEEeEEcCCCCCCceeee
Q psy17207         66 RLPNSYNITWMV--SSYTPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        66 ~~~~~~~L~w~~--~s~~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      ...+++.|.|.+  +++.||..|.|+||... ....|....
T Consensus        11 ~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~-~~~~~~~~~   50 (107)
T d2ic2a1          11 LSDESVMLRWMVPRNDGLPIVIFKVQYRMVG-KRKNWQTTN   50 (107)
T ss_dssp             CC---EEEEEEEECCSSCCEEEEEEEEEECC----CCEEEE
T ss_pred             EECCEEEEEEEeCccccCCceEEEEEEEecc-CCCcceEEE
Confidence            357899999997  35689999999999874 355676554

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.84  E-value=0.00043  Score=42.73  Aligned_cols=28  Identities=25%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             EEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         12 ETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        12 ~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ...+....|+|.+++.+|+|.|.|.+..
T Consensus        67 ~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          67 SKSNSSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             BTTTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             eCcCCEEEEecccccccccceecccccC
Confidence            3345567899999999999999997763

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.82  E-value=0.00041  Score=42.52  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|++....++...|+|.+++.+|+|.|.|.+.
T Consensus        59 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          59 PSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             CTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            367777666778899999999999999999654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.82  E-value=0.0013  Score=40.34  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +++.....+....|+|.+++.+|+|.|.|.+.+
T Consensus        60 ~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          60 SRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             ccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            567777777788999999999999999996554

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00065  Score=41.07  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ...+|+|++++.+|+|.|.|.....
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~   91 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHK   91 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEec
Confidence            3568999999999999999987643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.81  E-value=0.0009  Score=40.59  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|+.....+....|.|.+++.+|+|.|.|.+.
T Consensus        57 ~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          57 PVRFSGSGSGTSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceEEEecCCCEEEEEecccCcccCCeEEEEec
Confidence            356776666778899999999999999999653

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.80  E-value=0.00099  Score=41.15  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=28.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....+....|+|.+++.+|+|.|.|.+.+
T Consensus        65 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          65 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCeeeeccCCcccCccCCCCcccCEEEEEEECC
Confidence            4788877777888999999999999999996543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.80  E-value=0.00079  Score=41.18  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....+....|+|.+++.+|+|.|.|.+..
T Consensus        59 ~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          59 PSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            4688877677788999999999999999996543

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0028  Score=37.23  Aligned_cols=52  Identities=12%  Similarity=0.157  Sum_probs=33.3

Q ss_pred             CCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         68 PNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        68 ~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+.|.|.++..+.+.+|.|.|+....  ..|........ ...++..++.|.+
T Consensus        16 ts~i~v~W~~p~~~~i~~Y~v~y~~~~~--~~~~~~~~~~~-~~~~~~~i~~L~p   67 (94)
T d1fnfa1          16 TGVLTVSWERSTTPDITGYRITTTPTNG--QQGNSLEEVVH-ADQSSCTFDNLSP   67 (94)
T ss_dssp             SSCEEEEEECCSCSSCCEEEEEEEETTT--CSSCCEEEEEC-TTCCEEECCCCCT
T ss_pred             CCEEEEEeeCCCCCCeeEEEEEEEEecc--cCceEEEEEeC-CCccEEEECCCCC
Confidence            4568999998777779999999998754  23333333222 2334566666554

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0036  Score=36.33  Aligned_cols=62  Identities=11%  Similarity=0.171  Sum_probs=39.8

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      |.+|.....  ....+++.|.|.++  .+.+|..|.|+|+....  ..|.......   ...++.+.+|.+
T Consensus         1 P~~P~~~~~--~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~--~~~~~~~~~~---~~~~~~i~~L~p   64 (94)
T d2dn7a1           1 PGRPTMMIS--TTAMNTALLQWHPPKELPGELLGYRLQYCRADE--ARPNTIDFGK---DDQHFTVTGLHK   64 (94)
T ss_dssp             CCCCEEEEE--ECSTTEEEEEEECCSSCSSCCCEEEEEEEETTC--SSCEEEEEET---TCCEEEEECCCT
T ss_pred             CCCCcEeEE--EEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCC--CCcEEEEcCC---CccEEEEEccCC
Confidence            455554432  23578999999975  35689999999998754  5576655433   334455665544

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.79  E-value=0.00091  Score=41.52  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|+.....+....|.|.+++.+|+|.|.|.+.
T Consensus        60 ~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~   92 (114)
T d2rhea_          60 SDRFSASKSGTSASLAISGLESEDEADYYCAAW   92 (114)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcceecCCCCeeeeEecccCcccCceEEEeec
Confidence            368888777788899999999999999999775

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.70  E-value=0.0051  Score=35.79  Aligned_cols=54  Identities=6%  Similarity=0.062  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|..+   ...+|..|.|.|+.... ...|....  ......++..+.+|.+
T Consensus        18 ~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~-~~~~~~~~--~~~~~~~~~~i~~L~p   74 (95)
T d2ibga1          18 YSETAVVLHWSLASDADEHLITGYYAYYRPSSS-AGEYFKAT--IEGAHARSFKIAPLET   74 (95)
T ss_dssp             CSSSCEEEEEECCTTCCGGGCCEEEEEEEETTC-CSCCEEEE--EECTTCCEEEECSCCT
T ss_pred             eCCCEEEEEEEeeeeccCCcccccceeEeeeee-cceeeeee--ccCCceeEEEEeeccC
Confidence            4578999999964   24668999999998743 34555433  2234455667776654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00038  Score=42.97  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=26.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+.+..+  ....+|+|++++.+|+|.|.|..+.
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          70 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEe
Confidence            57877532  3466899999999999999998864

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.65  E-value=0.0014  Score=40.42  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=27.9

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|++....+....|+|++++.+|+|.|.|.+.
T Consensus        64 ~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          64 PDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceEEeeCCCCEEEEEECccccCcCEeEEEEcC
Confidence            368877666778899999999999999999544

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.64  E-value=0.0014  Score=40.31  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|+.....+....|.|.+++.+|+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          58 PERFSGSNSGNMATLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEeeecCCCccceEEeeeccCCCEEEEEEecC
Confidence            3678777778888999999999999999998754

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0035  Score=36.13  Aligned_cols=53  Identities=15%  Similarity=0.330  Sum_probs=35.6

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.+....++..|.|+|+.... ...+.....   ....++..+++|.+
T Consensus        12 ~~~~sv~l~W~~p~~~~~~~y~v~y~~~~~-~~~~~~~~~---~~~~~~~~i~~L~p   64 (91)
T d1fnfa2          12 IGPDTMRVTWAPPPSIDLTNFLVRYSPVKN-EEDVAELSI---SPSDNAVVLTNLLP   64 (91)
T ss_dssp             CCSSCEEEEEECCTTCCCSEEEEEEEETTC-TTCCEEEEE---CTTCCEEEECSCCT
T ss_pred             eCCCEEEEEEEecCCCCcceeEEEEEECCC-CccEEEEEe---CCCceEEEEeceeC
Confidence            358899999998777789999999998743 222333222   23445566776654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.57  E-value=0.0019  Score=39.80  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=27.7

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +|+.+.  ..+....|+|.+++.+|+|.|.|.+....+
T Consensus        58 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (115)
T d1ogad1          58 KRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQG   95 (115)
T ss_dssp             TTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             cccccccccccceeeeeecCCCccceeeEcccccCCCC
Confidence            565543  345678999999999999999998775443

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0068  Score=36.14  Aligned_cols=54  Identities=9%  Similarity=0.058  Sum_probs=36.4

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ....++.|+|++.  ...++..|.|+||... ....|..+.....  ...++.+..|.+
T Consensus        19 ~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~-~~~~w~~v~~~~~--~~~~~~l~~L~p   74 (106)
T d1cd9b2          19 HQPGCLWLSWKPWKPSEYMEQECELRYQPQL-KGANWTLVFHLPS--SKDQFELCGLHQ   74 (106)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESS-TTCCCEEEEEEES--CEEEEEECCCCS
T ss_pred             CCCCEEEEEEcCcccCCccceEEEEEEeecc-ccccceeeecccC--CceEEEEeccCC
Confidence            3578999999964  4567899999999863 3567887764433  334445555543

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0042  Score=36.67  Aligned_cols=43  Identities=12%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEcCC
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~   95 (123)
                      +.|.+|.-... .....+++.|.|.++...++..|.|+|+....
T Consensus         9 ~vP~~P~~~~~-~~~~~~si~l~W~~p~~~~i~~Y~i~y~~~~~   51 (102)
T d1x5za1           9 GVPGQPLNFKA-EPESETSILLSWTPPRSDTIANYELVYKDGEH   51 (102)
T ss_dssp             CCCCCCEEEEE-ECSSSSEEEEEEECCSCCCCCEEEECBEESSS
T ss_pred             CCCcCCCCeEE-EEccCCEEEEEEECCCCCCccceEEEEEeCCC
Confidence            45665543321 22357899999998877889999999998643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.0014  Score=40.90  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .+|++....++...|.|.+++.+|+|.|.|.+.+
T Consensus        59 ~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          59 PSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             CTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             eeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            3678776667778999999999999999997654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.52  E-value=0.00073  Score=41.70  Aligned_cols=35  Identities=17%  Similarity=0.071  Sum_probs=26.1

Q ss_pred             CCCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          6 TERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         6 d~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      ..|+.+.  .......|.|.+++.+|+|.|.|.+...
T Consensus        59 ~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          59 HQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             CSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             eeeeeeeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            3566654  2234567999999999999999987654

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0061  Score=37.44  Aligned_cols=55  Identities=15%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             CCCCeEEEEEEeCC-CCCCcceEEEeEEcCCCCC--Cceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSS-YTPLEEFKIKYRKIPGNEP--SPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s-~~pi~~y~v~yr~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+.++.|.|.++. ..+|..|.|.|+.......  .|......  ........+.+|.+
T Consensus        27 ~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~--~~~~~s~~i~~L~p   84 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAK--VPTERSAVLVNLKK   84 (120)
T ss_dssp             CBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECC--CTTCCEEEEESCCS
T ss_pred             eCCCeEEEEecCCCCCCcEEEEEEEeeecccCCCCcceEEEEec--cCceeEEEECCCCC
Confidence            46889999999753 4688999999998754333  45554432  22233345555443

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0038  Score=36.75  Aligned_cols=62  Identities=11%  Similarity=0.086  Sum_probs=40.9

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      +|.||.-+... ....+.+.|.|..+....+..|.|+|+....  ..|.....    .....+.++.|.
T Consensus         2 ~P~~P~nl~v~-~~~~~~v~l~W~~p~~~~~~~y~v~y~~~~~--~~~~~~~~----~~~~~~~~~~L~   63 (95)
T d2b5ic1           2 IPWAPENLTLH-KLSESQLELNWNNRFLNHCLEHLVQYRTDWD--HSWTEQSV----DYRHKFSLPSVD   63 (95)
T ss_dssp             ECCCCEEEEEE-EEETTEEEEEEECSSCSTTCEEEEEEEETTC--SSCEEEEE----CSSCEEEECSCC
T ss_pred             CCcCCCCCEEE-EEeCCEEEEEECCCCCceeEEEEEEEEcCCC--ceeeEeee----cccceeEcCCCC
Confidence            57777544321 2357899999998777788999999998754  56766443    223444555543

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0013  Score=38.49  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=36.9

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++..+++..|.++|+....  ..|....  ......+.+.+..|.+
T Consensus        17 ~t~~si~l~W~~p~~~~i~~Y~v~~~~~~~--~~~~~~~--~~~~~~t~~~i~~L~p   69 (95)
T d2fnba_          17 ITDSSIGLRWTPLNSSTIIGYRITVVAAGE--GIPIFED--FVDSSVGYYTVTGLEP   69 (95)
T ss_dssp             CCSSCEEEECCCCCCSSCCEEEEEEEEETS--CCEEEEE--ECCSSCSEEEECCCCT
T ss_pred             EcCCEEEEEEEecCCceEEeEEEEEEEeec--cceEEEE--EeCCCCeEEEEecccC
Confidence            468899999998777889999999998743  3343222  2244556667777654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.49  E-value=0.0022  Score=39.41  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCEEEEEEcccCCCCCeeEEEEE
Q psy17207          6 TERRIMETRGSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         6 d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      .+|+.....+....|+|++++.+|+|.|.|..
T Consensus        64 ~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          64 PDRFSGSGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             CTTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcEEeecCCCEEEEEECCccccCCceEEEEe
Confidence            36787777778889999999999999999943

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.48  E-value=0.0021  Score=39.17  Aligned_cols=30  Identities=13%  Similarity=0.295  Sum_probs=24.2

Q ss_pred             EEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         10 IMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        10 ~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..........|+|.+++.+|+|.|.|.+..
T Consensus        66 ~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          66 ASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            334456678999999999999999997653

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.46  E-value=0.001  Score=40.85  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=24.8

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+.+..  ......|+|.+++.+|+|.|.|.+.
T Consensus        66 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          66 KRNIILESSDSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             TCCEEEESTTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEeecccCCCCCcEEEEeEc
Confidence            4665543  3446689999999999999999764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.44  E-value=0.0016  Score=39.91  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=27.6

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +|+.+.  .......|+|.+++.+|+|.|.|.+....|
T Consensus        59 ~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          59 GRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             cceeeeeccCCCEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            455443  345677999999999999999998875443

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.43  E-value=0.0017  Score=39.97  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=27.3

Q ss_pred             ccCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          4 ETTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         4 ~~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..+.|+....  ......|+|++++.+|+|.|.|.+.-
T Consensus        49 ~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   86 (112)
T d1sq2n_          49 SKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   86 (112)
T ss_dssp             CCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             ccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEec
Confidence            3456776542  23466899999999999999997654

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0052  Score=36.78  Aligned_cols=63  Identities=13%  Similarity=0.068  Sum_probs=40.4

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      |.||.....  ....+++.|.|.++  ...+|..|.++|+...   ..|...... .....+.+.+..|.+
T Consensus         8 ~sPP~~~~~--~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~---~~~~~~~~~-~~~~~~~~~i~~L~p   72 (108)
T d1v5ja_           8 LSPPRGLVA--VRTPRGVLLHWDPPELVPKRLDGYVLEGRQGS---QGWEVLDPA-VAGTETELLVPGLIK   72 (108)
T ss_dssp             CCCCEEEEE--EECSSSEEEEEECCSCCSSCCCBEEEEEEETT---CCCEEEEEE-ECSSCCEEECCCCCT
T ss_pred             CCcCCCeEE--EEcCCEEEEEEEecccCCCceeEEEEEeeeee---eeeeecccc-ccceeeeEEEEeccC
Confidence            455554432  23567899999963  4578999999999753   467665533 233455666666544

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.38  E-value=0.0027  Score=39.72  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+||++..  ..+...|+|.+++.+|+|.|.|.+.
T Consensus        66 ~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEEeeeccccceeecccccccccCcEEEEeee
Confidence            36898864  3457789999999999999999754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.38  E-value=0.0018  Score=39.69  Aligned_cols=28  Identities=36%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .....|.|.+++.+|+|.|.|.+....|
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          68 ARYSTLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CceeEEEECCCCHhHCEEEEEEecCCCC
Confidence            4566899999999999999998775433

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.36  E-value=0.0042  Score=37.75  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=26.6

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+...  ..+....|.|.+++.+|+|.|.|.+..
T Consensus        59 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          59 GRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            566554  345688999999999999999997763

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.35  E-value=0.002  Score=39.34  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=25.7

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .+|+.... ..+...|+|.+++.+|+|.|.|.+.
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          60 SDRFFAERPEGSVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             STTEEEECTTSSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCceeeECCcCCEEEEEECCCCcCCCEEEEEeee
Confidence            35776543 3346789999999999999999764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0016  Score=40.10  Aligned_cols=33  Identities=9%  Similarity=0.128  Sum_probs=25.7

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|+.+.  ..++...|+|.+++.+|+|.|.|.+..
T Consensus        64 ~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          64 TGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             SSCEEEEEECSSEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             CcEEEEEECCCCeEEEEECCCCcccCeEEEEEEec
Confidence            455543  345667899999999999999997653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.33  E-value=0.0011  Score=40.14  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=24.9

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+...  ..+....|+|++++.+|+|.|.|.+.
T Consensus        58 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          58 GRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             TTEEEEEETGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred             cceeEEECCCCCeeEeEeccCCCCCceeEeeeec
Confidence            455443  34557789999999999999999765

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.29  E-value=0.0026  Score=39.04  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=27.0

Q ss_pred             cCCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          5 TTERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         5 ~d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .++|+.+..  ......|+|.+++.+|+|.|.|.+..
T Consensus        51 ~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          51 IGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             CBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            456776653  23456899999999999999998754

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.01  Score=34.98  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             cCCCceeecC-CCCCCCCeEEEEEEeC----CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         53 KPNPAIFRSH-PQGRLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        53 ~P~p~~~~~~-~~~~~~~~~~L~w~~~----s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +|+||.-+.. ......+.+.|.|.++    +...+..|.|+|+...  ...|..+....   ..++..+..|.+
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~--~~~~~~~~~~~---~~~~~~i~~L~p   70 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER--SKTFTTWMVKD---LQHHCVIHDAWS   70 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETT--CSCCEEEECGG---GCSEEEESSCCT
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCC--CCceeeecccc---ceEEEEECCCCC
Confidence            4677754432 1223467899999964    3456888999999865  36788876543   234556666543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.28  E-value=0.0036  Score=38.60  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=27.2

Q ss_pred             CCCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..|+.+.. .+....|+|.+++.+|+|.|.|.+.-
T Consensus        64 ~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          64 KDKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             TTTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cccceeeccccccccccccccccccCceEEEEEec
Confidence            46777763 34567899999999999999998764

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0096  Score=34.92  Aligned_cols=42  Identities=17%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCC
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~   95 (123)
                      .|.++.... .......++.|.|..+  ...+|..|.|+|+....
T Consensus         3 ~P~~p~~~~-~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~   46 (98)
T d1x5la1           3 APSQVVVIR-QERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDK   46 (98)
T ss_dssp             CCCCCCCEE-CSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSS
T ss_pred             CCCCCCceE-EEeccCCEEEEEEECCCCCCCCEEEEEEEeecccc
Confidence            455554333 2334688999999964  35689999999998654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.27  E-value=0.0021  Score=39.19  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=26.4

Q ss_pred             CCCEEEEEc-CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          6 TERRIMETR-GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         6 d~R~~i~~~-~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ++|+..... +....|+|.+++.+|+|.|.|.+..
T Consensus        60 ~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          60 NNRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             STTEEEECTTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             CccEEEEcCCCCEEEEEECCcccCCCceEEEeeeC
Confidence            467766543 3456899999999999999997653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.26  E-value=0.0022  Score=39.16  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+.+..  .+....|+|.+++.+|+|.|.|.+...
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          60 GHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CceEEEEeccCCEEEEEECCCCccccccccceeecC
Confidence            5776653  345678999999999999999987643

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.011  Score=33.75  Aligned_cols=53  Identities=13%  Similarity=0.253  Sum_probs=35.9

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++. .++..|.|.|+....  ..+........+....+..++.|.+
T Consensus        13 ~~~sv~v~W~~p~-~~~~~y~v~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p   65 (92)
T d1tdqa2          13 TATSLDLEWDNSE-AEAQEYKVVYSTLAG--EQYHEVLVPKGIGPTTKTTLTDLVP   65 (92)
T ss_dssp             CSSCEEEEEECCS-SCCSEEEEEEEETTC--CCCEEEEEECCSSSEEEEEECSCCT
T ss_pred             cCCEEEEEEEecC-CcccceEEEEEEcCC--CcceeeEEEecCCCeeEEEECCccC
Confidence            5788999999764 468899999998754  3444444444444555566766654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0031  Score=38.78  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..  ..+.-.|+|.+++.+|+|.|.|..-
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~   92 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIY   92 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEe
Confidence            5888864  3556789999999999999999653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.08  E-value=0.0022  Score=39.29  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=25.4

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+....  ......|+|.+++.+|+|.|.|.+...
T Consensus        60 ~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          60 NGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             GGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             CCCEEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence            4555542  233457999999999999999988754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.06  E-value=0.0038  Score=37.97  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=26.4

Q ss_pred             CCEEEE--EcCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIME--TRGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~--~~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+...  ..+....|+|++++.+|+|.|.|.+...
T Consensus        59 ~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          59 RGFEATYNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             TTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             CceeeeecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            566554  2345678999999999999999987643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.06  E-value=0.00038  Score=41.90  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             CCCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          6 TERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         6 d~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .+|+++..  ......|+|.+++.+|+|.|.|.+....|
T Consensus        50 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          50 SGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             SSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEETTS
T ss_pred             cccceeeccCcceecccCcCCCCcccCEEEeEeEecCCC
Confidence            35665542  33456799999999999999998876544

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.04  E-value=0.0033  Score=39.10  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..  ..+...|+|.+++.+|+|.|.|.+.
T Consensus        66 ~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          66 KKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             SEEEEEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             cccccccccccccccccccccccccceeEEEEEc
Confidence            5777764  3457789999999999999999654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.00  E-value=0.0015  Score=39.97  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=25.7

Q ss_pred             CEEEEEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          8 RRIMETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         8 R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      |+.+..++....|+|.+++.+|+|.|.|.+.-
T Consensus        59 ~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          59 SLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             ceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            44555556677899999999999999997653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0061  Score=37.26  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=23.3

Q ss_pred             EEcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         12 ETRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        12 ~~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ........|+|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          69 TFNESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eCCCCEEEEEhhcCccccCEeEEEEEec
Confidence            3445678999999999999999997753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.86  E-value=0.0046  Score=37.62  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+.... ......|+|.+++.+|+|.|.|.+.-
T Consensus        60 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          60 GRFSGRQFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             cceeeccCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            5665543 34567899999999999999998764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0052  Score=36.53  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      ...+.|.++...|+|.|.|...|..+
T Consensus        61 ~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          61 DPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             CCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eEEEEecCCCHHHCceEEEEEECCCc
Confidence            34699999999999999999887654

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.016  Score=34.44  Aligned_cols=65  Identities=8%  Similarity=0.000  Sum_probs=39.5

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      .|.+|..... .....+++.|+|.++   ...++..|.|.|+....  ..|........  ..+.+.+++|.+
T Consensus        10 ~P~~P~~l~~-~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~--~~~~~~~~~L~p   77 (107)
T d1x5fa1          10 LPSAPRDVVA-SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI--ARERVENTSHP--GEMQVTIQNLMP   77 (107)
T ss_dssp             CCCCCEEEEE-EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTC--CCCEEEECSST--TCSEEEECSCCT
T ss_pred             CCcCCCccEE-EEecCCEEEEEEECCccCCCCceEEEEEEEEeCCC--CceEEEEEeCC--CccEEEecCCCC
Confidence            4565543321 223578899999963   45689999999998643  44444433332  345566666544

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.79  E-value=0.0052  Score=37.35  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +|+....  .++...|+|++++.+|+|.|.|.+.+.
T Consensus        61 ~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          61 DRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CceeEeecCCCCccccccccCCcccCcEEEEeeccC
Confidence            6777653  356789999999999999999976543

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0067  Score=35.51  Aligned_cols=55  Identities=15%  Similarity=0.213  Sum_probs=35.3

Q ss_pred             CCCCeEEEEEEeC----CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~----s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ....++.|.|...    ...++..|.|.|+....  ..+........+.......+++|.+
T Consensus        13 ~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p   71 (101)
T d1x4ya1          13 VNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDS--DNDSDYKKDMVEGDRYWHSISHLQP   71 (101)
T ss_dssp             SSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTS--CSGGGCCCEEEETTCCEEEECSCCT
T ss_pred             EcCCEEEEEEecCcccccccceEEEEEEeeeccc--eeeeeeeEEEEcCCeeEEEEcCCCC
Confidence            3678999999852    34789999999998654  3344444333444444455666554

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.009  Score=35.23  Aligned_cols=55  Identities=9%  Similarity=0.124  Sum_probs=35.3

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ....++.|.|.++  .+.+|..|.+.|+....  ..|..+.....+.......+.+|.+
T Consensus        25 ~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p   81 (111)
T d1x5ka1          25 GKPKTIIVNWQPPSEANGKITGYIIYYSTDVN--AEIHDWVIEPVVGNRLTHQIQELTL   81 (111)
T ss_dssp             SCTTCEEEEEECCSCCSSCCCEEEEEEESCSS--SCTTTSEEEEESTTCSEEEECSCCS
T ss_pred             CCCCEEEEEEEccccCCCceeeeEEeeeecCC--CCcceeEEEEeCCCeeEEEECCCCC
Confidence            3567899999964  35789999999987654  3333333333344455566666654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0084  Score=35.52  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=21.8

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNP   40 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~   40 (123)
                      +....+.|.+|...|+|.|.|...+.
T Consensus        54 ~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          54 INKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccEEEEEEeeeecCCCceEEEEeCCC
Confidence            34568999999999999999987654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.73  E-value=0.0033  Score=38.34  Aligned_cols=33  Identities=15%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             CCEEEE-EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIME-TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~-~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+... ..+....|+|.+++.+|+|.|.|.+..
T Consensus        61 ~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          61 EGYSVSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             TTEEEECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceEEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            445443 344567899999999999999998764

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.026  Score=33.46  Aligned_cols=49  Identities=8%  Similarity=0.142  Sum_probs=33.1

Q ss_pred             CCeEEEEEEeCCC------CCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         68 PNSYNITWMVSSY------TPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        68 ~~~~~L~w~~~s~------~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..++.|+|.++..      ..+.+|.|+|+...+  ..|....    ....+.+.|..|.+
T Consensus        20 ~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~--~~w~~~~----~~~~~~~~i~~L~~   74 (106)
T d1axib2          20 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE--TKWKMMD----PILTTSVPVYSLKV   74 (106)
T ss_dssp             EEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTC--SSCEECC----CBSSSEEEEEEEET
T ss_pred             cCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCC--ccceeee----ecccceEEECCCCC
Confidence            5579999997532      246789999999754  5676543    23445667777654

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.70  E-value=0.0083  Score=35.56  Aligned_cols=54  Identities=15%  Similarity=0.235  Sum_probs=36.4

Q ss_pred             CCCCeEEEEEEe----CCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMV----SSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~----~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|+|.+    +.+.++..|.|.|+.... ...|.....  .+...+...+.+|.+
T Consensus        16 ~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~-~~~~~~~~~--~~~~~~~~~i~~L~p   73 (105)
T d1cfba2          16 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIP-AAAWENNNI--FDWRQNNIVIADQPT   73 (105)
T ss_dssp             SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESST-TCCCEEEEE--CCTTCCEEEECSCCS
T ss_pred             ccCCeEEEEEeCCChhhcCceEEEEEEEeeeecc-ccceeEEEe--cCCCccEEEECCCCC
Confidence            357899999985    245799999999998743 445654433  344455667776654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0035  Score=38.53  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=23.0

Q ss_pred             EcCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         13 TRGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        13 ~~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ..++...|.|++++.+|+|.|.|.+..
T Consensus        70 ~~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          70 SSGNQVNLTIQGLRAMDTGLYICKVEL   96 (118)
T ss_dssp             BCSSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEeeccccCCCEEEEEeEec
Confidence            345677899999999999999997764

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.65  E-value=0.04  Score=32.04  Aligned_cols=50  Identities=10%  Similarity=0.040  Sum_probs=31.6

Q ss_pred             cCCCceeecC---CCCCCCCeEEEEEEeCC------CCCCcceEEEeEEcCCCCCCceeee
Q psy17207         53 KPNPAIFRSH---PQGRLPNSYNITWMVSS------YTPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        53 ~P~p~~~~~~---~~~~~~~~~~L~w~~~s------~~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      +|.||.-...   ........+.|+|+++.      +..+..|.++|+....  ..|....
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~--~~~~~~~   60 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEA--EEWEIHF   60 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSC--SCCEEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCC--cceeeec
Confidence            5777753321   12234677999999753      2366899999998754  6676654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.62  E-value=0.0088  Score=37.45  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|.
T Consensus        65 gRftiS~D~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEeccCchheecccccccccccccEEEEE
Confidence            69998753  4566799999999999999993

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.61  E-value=0.0082  Score=37.12  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++...  .++...|.|.+++.+|+|.|.|....
T Consensus        62 ~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          62 DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceeeccccccceecccccccccCCceeecCccc
Confidence            6887653  35678999999999999999997554

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0063  Score=36.10  Aligned_cols=51  Identities=10%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             CCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++   ++.++..|.++|+.... ...|.... .   .......+..|.+
T Consensus        24 ~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~-~~~~~~~~-~---~~~~~~~i~~L~p   77 (107)
T d2crma1          24 HSHSFKITWDPPKDNGGATINKYVVEMAEGSN-GNKWEMIY-S---GATREHLCDRLNP   77 (107)
T ss_dssp             ETTEEEEECCCCTTCCSSCCCEEEEEEEESSS-SCCCEEEE-C---SSCSEEEECSCCT
T ss_pred             cCCEEEEEEEECccCCcceEEEEEEEEEeecC-CCcEEEee-c---CCccEEEEeccCC
Confidence            578999999963   34789999999987643 33344332 2   2234455555543

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.038  Score=32.42  Aligned_cols=53  Identities=6%  Similarity=-0.053  Sum_probs=34.3

Q ss_pred             CCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.+.  ...++..|.|+||... ....|........  ....+.|..|.+
T Consensus        19 ~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~-~~~~~~~~~~~~~--~~~~~~i~~L~p   73 (105)
T d2d9qb2          19 QAGCLQLSWEPWQPGLHINQKCELRHKPQR-GEASWALVGPLPL--EALQYELCGLLP   73 (105)
T ss_dssp             CCSCEEEEEECCGGGTTSCEEEEEEEEESS-SCCCCEEEEEECS--CEEEEEECSCCS
T ss_pred             CCCeEEEEEcCCCCCCceeEEEEEEEEecC-CccceeeeecccC--CcceeEEecccC
Confidence            578999999974  4567889999999864 3556765543322  233345555443

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.52  E-value=0.012  Score=35.81  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=24.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|......|
T Consensus        53 ~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          53 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             TTEEEEC----CEEEEEECCC---CCSEEEEEEEECSS
T ss_pred             eceEEeccccccEEEeeeeeccccccEEEEeEEECCCC
Confidence            68888743  4556799999999999999997654433

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0095  Score=35.88  Aligned_cols=67  Identities=9%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      +.|.+|..... .....+++.|.|.++  .+.+|..|.|+|+.... ...|...+...  .....+.+.+|.+
T Consensus        19 ~~P~~P~~~~~-~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~-~~~~~~~~~~~--~~~~~~~i~~L~p   87 (117)
T d1wfoa1          19 DVPGPPMGILF-PEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTT-TANTATVEVLA--PSARQYTATGLKP   87 (117)
T ss_dssp             CCCCCCCCCEE-EEECSSEEEEECCCCSCCCSCCCEEEEEEEESSC-CCSCCCEEEEC--TTCCEEEEESCCS
T ss_pred             CCCcCCCCcEE-EEecCCEEEEEEECCCCCCCceEEEeeeeeeccC-CCceEeEEecC--CceEEEEECCCCC
Confidence            34655543321 122578999999964  35689999999988754 33343333222  2233456666544

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.48  E-value=0.025  Score=32.23  Aligned_cols=51  Identities=18%  Similarity=0.405  Sum_probs=35.7

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.+.. .++..|.|+|+....  ..|.....   +...+...+++|.+
T Consensus        12 v~~~s~~l~W~~~~-~~~~~Y~i~~~~~~~--~~~~~~~~---~~~~~~~~i~~L~p   62 (88)
T d1qr4a2          12 ITENSATVSWTPPR-SRVDSYRVSYVPITG--GTPNVVTV---DGSKTRTKLVKLVP   62 (88)
T ss_dssp             CCSSCEEEEECCCS-SCCSEEEEEEEETTC--CCCEEEEE---ETTCCEEEECSCCS
T ss_pred             ecCCEEEEEEEccc-EeeceEEEEEEeccC--CceEEEEe---cCCccEEEECCCCC
Confidence            35788999999754 478999999998754  45555443   33445567777665

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.042  Score=31.20  Aligned_cols=52  Identities=12%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++. .++..|.|.|+.... ...+.....   ....+.+.+..|.+
T Consensus        13 ~s~~s~~l~W~~p~-~~~~~y~v~~~~~~~-~~~~~~~~~---~~~~~~~~i~~L~p   64 (90)
T d1tena_          13 VTDTTALITWFKPL-AEIDGIELTYGIKDV-PGDRTTIDL---TEDENQYSIGNLKP   64 (90)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEEETTC-TTCCEEEEE---ETTCCEEEECSCCT
T ss_pred             ecCCEEEEEEEeCc-eEeccEEEEEEEcCC-CceeEEEEe---cCCcceeeEeeecC
Confidence            46889999999754 578999999998743 333444332   23344556666554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.46  E-value=0.005  Score=37.53  Aligned_cols=25  Identities=12%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .....|.|++++.+|+|.|.|.+..
T Consensus        69 ~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          69 KESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             TTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             CCeEEEEECcCCcCCceeEEEeecc
Confidence            4456799999999999999996654

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0088  Score=35.26  Aligned_cols=49  Identities=12%  Similarity=0.287  Sum_probs=32.8

Q ss_pred             CCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...++.|.|.++  .+.+|..|.|.|+....  ..|..+..     ..+++.+.+|.+
T Consensus        23 s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~--~~~~~~~~-----~~~~~~i~~L~p   73 (103)
T d1x5ga1          23 SPTSITVTWETPVSGNGEIQNYKLYYMEKGT--DKEQDVDV-----SSHSYTINGLKK   73 (103)
T ss_dssp             ETTEEEEECCCCSCCSSCCSEEEEEEEETTC--CCCCCEEE-----CSSEEEECSCCT
T ss_pred             cCCEEEEEEECCcCCCccEEEEEEEEEeCCC--ceeEEEec-----cccEEecCCCCC
Confidence            578899999964  35689999999998643  45555432     223455655544

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.032  Score=33.74  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             eccCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeee
Q psy17207         51 SGKPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        51 ~~~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      ...|.+|.-... .....+++.|.|.+.  ...++..|.++|+........|....
T Consensus        14 ~d~P~~P~~~~v-~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~   68 (127)
T d1ueya_          14 YDVPNPPFDLEL-TDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQT   68 (127)
T ss_dssp             CCSCCCCEEEEE-ECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEE
T ss_pred             cccCcCCCCcEE-EEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEe
Confidence            456777653321 224578999999964  45788999999998766555555544

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.27  E-value=0.0041  Score=37.87  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         14 RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        14 ~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ......|+|.++..+|+|.|.|.+..
T Consensus        68 ~~~~~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          68 TTEDFPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             SSSBCCEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHCEEEEEeecC
Confidence            34456899999999999999997653

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.022  Score=33.51  Aligned_cols=43  Identities=5%  Similarity=0.011  Sum_probs=27.7

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeC---CCCCCcceEEEeEEcC
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVS---SYTPLEEFKIKYRKIP   94 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~   94 (123)
                      .+|+||.-...........+.|.|..+   ....+..|.|+|+...
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~   48 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGN   48 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCC
Confidence            367777655332222455689999964   3456678999999874

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.012  Score=33.86  Aligned_cols=50  Identities=12%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++  ...++..|.|+|+....  ..|...     +...+.+.+.+|.+
T Consensus        12 ~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~--~~~~~~-----~~~~~~~~i~~L~p   63 (93)
T d1x4xa1          12 RSATCAQVNWEVPLSNGTDVTEYRLEWGGVEG--SMQICY-----CGPGLSYEIKGLSP   63 (93)
T ss_dssp             EETTEEEEECCCCSCSSSCCCEEEEEEESSTT--SCCEEE-----EESCSEEEEESCCS
T ss_pred             eCCCeEEEEEEecccCCCeeEEEEEEEccCCC--cceEee-----cCCccEEEEcccce
Confidence            3578999999964  45789999999987543  334332     34455666766654

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.011  Score=34.51  Aligned_cols=56  Identities=9%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             CCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCcee-eeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMS-NQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...++.|.|.++  .+.++..|.|.|+........... ......+.......+.+|.+
T Consensus        15 ~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p   73 (103)
T d1qg3a2          15 SSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRE   73 (103)
T ss_dssp             ETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCT
T ss_pred             cCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCC
Confidence            578999999964  457999999999987543332221 12233333344455555543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.20  E-value=0.012  Score=36.28  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..-
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence            59998764  556679999999999999999643

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.049  Score=31.63  Aligned_cols=61  Identities=8%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      |.+|..... .....+++.|.|.+.. .++..|.|.|+....  ..| ....   .+..+++.+++|.+
T Consensus         1 P~~P~~l~~-~~~t~~si~l~W~~p~-~~i~~Y~v~~~~~~~--~~~-~~~~---~~~~~~~~l~~L~p   61 (102)
T d2cuha1           1 PDGPTQLRA-LNLTEGFAVLHWKPPQ-NPVDTYDIQVTAPGA--PPL-QAET---PGSAVDYPLHDLVL   61 (102)
T ss_dssp             CSSCEEEEC-CCCSSSCEEEEEECCS-SCCSEEEEEEECSSS--CCE-EEEE---ETTCSEEEECSCCS
T ss_pred             CcCCCccEE-EEeCCCEEEEEEEeee-ccceeeEEEEEeccc--cce-eeee---eeeeeeEEEccEEe
Confidence            455553332 2346889999999754 468899999986532  233 2222   23444566666654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.16  E-value=0.02  Score=35.71  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=26.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|.+.-
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeecc
Confidence            58998754  4566799999999999999996543

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.028  Score=32.84  Aligned_cols=30  Identities=20%  Similarity=0.406  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEEeC----CCCCCcceEEEeEEcCC
Q psy17207         66 RLPNSYNITWMVS----SYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        66 ~~~~~~~L~w~~~----s~~pi~~y~v~yr~~~~   95 (123)
                      ..++++.|.|.+.    .+.++..|.+.|+....
T Consensus        20 ~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~   53 (109)
T d1va9a1          20 VTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP   53 (109)
T ss_dssp             CSSSEEEEEEECCCSSTTCSCCCEEEEEEEESST
T ss_pred             ecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccc
Confidence            3688999999963    24689999999998754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.06  E-value=0.017  Score=36.12  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=26.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|...
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            59988764  456689999999999999999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.06  E-value=0.015  Score=36.23  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|...
T Consensus        67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             cccceecccccceeeeeEEeeeeccceEEeeEec
Confidence            69988753  446789999999999999999643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.03  E-value=0.014  Score=36.38  Aligned_cols=30  Identities=13%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|.
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCA   97 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFCK   97 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEEE
Confidence            58888743  4456799999999999999994

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.059  Score=30.44  Aligned_cols=52  Identities=12%  Similarity=0.257  Sum_probs=34.0

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|+|.++. .++..|.|.|+....  ..|.... . .....+.+.+++|.+
T Consensus        12 vt~~sv~l~W~~p~-~~~~~Y~i~~~~~~~--~~~~~~~-~-v~~~~~~~~i~~L~p   63 (89)
T d1fnfa3          12 ITANSFTVHWIAPR-ATITGYRIRHHPEHF--SGRPRED-R-VPHSRNSITLTNLTP   63 (89)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECSCC--SSCCEEE-E-EETTCCEEEEESCCT
T ss_pred             ecCCEEEEEEEeCC-CEEeeEEEEEEECCC--CCceEEE-E-ECCCccEEEECCCcc
Confidence            45889999999754 468899999997643  3333221 1 133455667777665

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.024  Score=34.06  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCCEEEEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207          4 ETTERRIMETRGSRHTLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus         4 ~~d~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      .+++.|.+..+|   +|.|..+..+|+|.|.-.+-|.-|....
T Consensus        52 ~~~~~y~i~~nG---tLkIK~L~~~d~GtYkv~vYd~~Gk~vl   91 (101)
T d1hnfa1          52 KEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVL   91 (101)
T ss_dssp             ESCTTEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEE
T ss_pred             CCCceEEEccCC---cEEeeeeeecCCCcEEEEEEcCCCcEee
Confidence            345678887655   9999999999999999999999998875

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.94  E-value=0.013  Score=36.98  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=25.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEee
Confidence            58988754  345569999999999999999654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.91  E-value=0.025  Score=35.59  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          66 GRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceEEeccCCCcEEEeeeeeeccCcceEEEEEecc
Confidence            68988754  4566799999999999999996543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.84  E-value=0.02  Score=35.66  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=26.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|.+.
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            59988753  556679999999999999999654

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.84  E-value=0.0056  Score=37.38  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             CCEEEEE-cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMET-RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~-~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+.... .+....|+|.+++.+|+|.|.|.+..
T Consensus        62 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          62 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             TTCCCEECTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred             cceeeEcCCCCeEEEEecccCcCCceeEEEEeec
Confidence            5665543 34456899999999999999997654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.83  E-value=0.02  Score=36.11  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++|..+  .+.-.|.|.+++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEEe
Confidence            69998754  5567799999999999999997553

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.83  E-value=0.022  Score=35.75  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|...
T Consensus        67 ~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          67 SRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            59988754  446679999999999999999753

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.026  Score=34.23  Aligned_cols=42  Identities=7%  Similarity=0.115  Sum_probs=29.7

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCC
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGN   96 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~   96 (123)
                      .|.+|......  ...+++.|.|.++  .+.+|..|.|+|+.....
T Consensus         7 ~P~aP~~v~v~--~~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~   50 (123)
T d1wfta_           7 GPGAPSTVRIS--KNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQ   50 (123)
T ss_dssp             CCCCCEEEEEE--ECSSEEEEEEECCSSCCSSCCCEEEEEEECSSC
T ss_pred             CCcCCcccEEE--eCCCEEEEEecCchhcCCceEEEEEEEEECCCC
Confidence            46666544322  2467899999963  456899999999887553

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.78  E-value=0.017  Score=35.78  Aligned_cols=31  Identities=13%  Similarity=0.262  Sum_probs=25.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|..
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            58888753  44567999999999999999943

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.78  E-value=0.02  Score=35.98  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=27.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|.+..
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeecc
Confidence            68988754  4566799999999999999997653

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.052  Score=31.30  Aligned_cols=66  Identities=9%  Similarity=0.039  Sum_probs=33.4

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeCC---CCC--CcceEEEeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVSS---YTP--LEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~s---~~p--i~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      +|.||.-+.. .....+++.|.|..+.   ...  ...|.++|+....  ..|................+.+|.
T Consensus         1 kP~~P~~l~v-~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~   71 (101)
T d1iarb2           1 KPRAPGNLTV-HTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSEND--PADFRIYNVTYLEPSLRIAASTLK   71 (101)
T ss_dssp             CCCCCEEEEE-C----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSS--CSCEEEEEECSSCCEEEECC----
T ss_pred             CcccCCcCEE-EEEeCCeEEEEEccccCCCCccceeeEEEEeeecccc--eeeeeeeeeccCccceEEEECCCC
Confidence            4677764432 2235789999999642   222  2459999998754  445444433333344445555553

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.75  E-value=0.022  Score=35.35  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|..
T Consensus        66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            69998754  45567999999999999999954

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.71  E-value=0.022  Score=35.91  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+.-.|+|++++.+|++.|.|.+.
T Consensus        71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeEeccCCceEEEEeeecccccceeEEEEEEE
Confidence            58988743  556789999999999999999764

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.67  E-value=0.02  Score=35.62  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|..
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEE
Confidence            58888643  45567999999999999999943

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.57  E-value=0.026  Score=35.18  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|+++..+  .+.-.|.|++++.+|++.|.|...
T Consensus        68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccccceeccceeeccCCCceEEEeeEe
Confidence            59988754  456689999999999999999654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=35.85  Aligned_cols=27  Identities=15%  Similarity=0.354  Sum_probs=22.2

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEEcCC
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEATNPM   41 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~N~~   41 (123)
                      .....|.|.+++.+|+|.|.|.+....
T Consensus        68 ~~~~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          68 TEHFPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             SSBCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             CCceEeeeccccccccccEEEEEecCC
Confidence            345679999999999999999876543

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0091  Score=35.32  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=32.0

Q ss_pred             CCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++  ++.||..|.++|+.... ...|...    .......+.++.|.+
T Consensus        23 ~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~-~~~~~~~----~~~~~~~~~~~~L~p   75 (105)
T d1x3da1          23 TKNSLTLQWKAPSDNGSKIQNFVLEWDEGKG-NGEFCQC----YMGSQKQFKITKLSP   75 (105)
T ss_dssp             ETTEEEEECCCCCCCSSCEEEEEEEECTTTS-SSCCEEE----EEESCSEEEEESCCT
T ss_pred             cCCEEEEEEECCCCCcCccEEEEEEEecCCC-cceeEEE----ecCCccEEEecCCcC
Confidence            578999999974  46799999999986532 2222222    223344556666544

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.51  E-value=0.025  Score=35.36  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeec
Confidence            58999854  45567999999999999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.49  E-value=0.024  Score=35.42  Aligned_cols=32  Identities=13%  Similarity=0.282  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|...
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEee
Confidence            59988753  456679999999999999999653

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.045  Score=31.16  Aligned_cols=52  Identities=12%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++  .+.+|..|.++|+....  ..|.....   ....+.+.+.+|.+
T Consensus        12 ~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~--~~~~~~~~---~~~~~~~~i~~L~p   65 (95)
T d2djsa1          12 ATMRSITLSWPQPEQPNGIILDYEIRYYEKEH--NEFNSSMA---RSQTNTARIDGLRP   65 (95)
T ss_dssp             ECSSEEEEECCCCSCCSSCEEEEEEEEEETTS--CSTTCEEE---EESSSEEEEESCCT
T ss_pred             ecCCEEEEEEEECCCCCcceEEeeeeeeeecc--CcceeEee---cCCccEEEEeecCC
Confidence            3688999999964  45689999999998754  23333222   22334456666554

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.47  E-value=0.031  Score=34.75  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEcCCc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATNPMG   42 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N~~G   42 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|......|
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEecCCC
Confidence            68988754  4556799999999999999997655443

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.022  Score=33.23  Aligned_cols=50  Identities=12%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeCCCC--C----CcceEEEeEEcCCCCCCceeee
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVSSYT--P----LEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~s~~--p----i~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      +|+||.-........+..+.|+|..+...  +    ...|.|+||....  ..|....
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~--~~~~~~~   56 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSK--REKKDRV   56 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC--------CEE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCC--CccEEec
Confidence            47777654322212345699999976432  2    5789999987643  4565443

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.44  E-value=0.033  Score=34.58  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|++|..+  .+.-.|.+++++.+|++.|.|....
T Consensus        66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeEEEEeccccceEEecccccCCCCceEEEEeecC
Confidence            68888753  5567799999999999999996544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.42  E-value=0.033  Score=34.79  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|....
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecCC
Confidence            68988754  4566799999999999999996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.42  E-value=0.041  Score=34.23  Aligned_cols=32  Identities=9%  Similarity=0.320  Sum_probs=26.3

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 gR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          66 DKATLTVDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             hcceeeeccCcceEEccccccCCCcceEEEeeec
Confidence            59988653  456679999999999999999754

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.35  E-value=0.013  Score=36.79  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|....
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEecC
Confidence            58988753  4456799999999999999996554

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.027  Score=33.07  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeCC--CCCCcceEEEeEEcCC
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPG   95 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~s--~~pi~~y~v~yr~~~~   95 (123)
                      +.|.+|..... .....+++.|.|..+.  +.+|..|.|.|+....
T Consensus         9 ~vP~~p~~l~~-~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~   53 (106)
T d1wfna1           9 DVPGPVGHLSF-SEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR   53 (106)
T ss_dssp             CSCCCCSCCEE-ESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSC
T ss_pred             CCCcCCCCcEE-EEecCCEEEEEEECCCCCCCcEEeEEEEEEECCC
Confidence            34555432221 2235789999999643  4579999999998753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.31  E-value=0.036  Score=34.37  Aligned_cols=33  Identities=12%  Similarity=0.215  Sum_probs=27.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          66 GSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeecccccceEEEeecccCcCcceEEEEeEcC
Confidence            68988754  4456799999999999999997544

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.26  E-value=0.009  Score=36.22  Aligned_cols=53  Identities=13%  Similarity=0.113  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEEeC---CCCCCcceEEEeEEcC--CCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIP--GNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++   ++.++..|.++|+...  .....|...    .++..+.+.|.+|.+
T Consensus        27 vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~----~~~~~~~~~v~~L~p   84 (120)
T d1wfua_          27 VTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVI----YTGYATRHVVEGLEP   84 (120)
T ss_dssp             EETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEE----EEESCSEEEEESCCT
T ss_pred             ecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeee----ccccccEEeCCCCCC
Confidence            4678999999963   3568899999997532  222334332    234455667776654

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.25  E-value=0.033  Score=34.91  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeec
Confidence            58988754  456789999999999999999654

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=94.25  E-value=0.032  Score=34.75  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+.-.|.|.+++.+|++.|.|...
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEec
Confidence            69988753  456679999999999999999643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.23  E-value=0.044  Score=34.20  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=26.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            69988754  455679999999999999999654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.21  E-value=0.035  Score=34.37  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeee
Confidence            68888753  456789999999999999999653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.027  Score=33.48  Aligned_cols=23  Identities=30%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEE
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      ....+.|.++...|+|.|+|.-.
T Consensus        58 ~~a~F~l~~v~~~~~G~Y~C~y~   80 (98)
T d1ugna2          58 SRAIFSVGPVSPSRRWWYRCYAY   80 (98)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEE
T ss_pred             eEEEEEeeecccCCCeEEEEeeE
Confidence            34579999999999999999654

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=94.17  E-value=0.045  Score=34.38  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|....
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEec
Confidence            68888754  4566799999999999999996553

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.15  E-value=0.029  Score=34.64  Aligned_cols=31  Identities=16%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            69998754  45567999999999999999953

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.08  E-value=0.034  Score=34.47  Aligned_cols=31  Identities=10%  Similarity=0.246  Sum_probs=25.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      .|+++..+  .+...|.|++++.+|++.|.|..
T Consensus        66 ~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          66 AKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence            48888654  44567999999999999999953

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.047  Score=32.45  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCceeEEEEEEecc
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKHRAYLELSGK   53 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~~i~l~~~   53 (123)
                      .++|++++..|.|.|.|.|.-. |....+..|..+
T Consensus        60 Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl~~r   93 (95)
T d1fltx_          60 GFIISNATYKEIGLLTCEATVN-GHLYKTNYLTHR   93 (95)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEE
T ss_pred             CEEEeCCCcccCeEEEEEEEEC-CEEEEEEEEEEe
Confidence            5899999999999999999765 666666555443

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.049  Score=31.66  Aligned_cols=36  Identities=8%  Similarity=0.243  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceee
Q psy17207         66 RLPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSN  103 (123)
Q Consensus        66 ~~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~  103 (123)
                      ...+++.|+|.++   ++.+|..|.++|+....  ..|...
T Consensus        14 ~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~--~~~~~~   52 (104)
T d1bpva_          14 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPN--GRWLKA   52 (104)
T ss_dssp             EETTEEEEECCCCSCCTTCCCSCCEEEEEETTS--CCCEEC
T ss_pred             ecCCEEEEEEEeccccCcceEEEEEEEeecccc--cceeEE
Confidence            3578999999963   45789999999998754  445443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.99  E-value=0.043  Score=34.00  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      .|+++..+  .+...|.|++++.+|++.|.|..
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr   97 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTR   97 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEecccccceeeccccccccCcceEEEEec
Confidence            59988754  45667999999999999999954

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.97  E-value=0.032  Score=34.05  Aligned_cols=31  Identities=16%  Similarity=0.202  Sum_probs=25.5

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             cceEEecCCceeEEEEeecCCCcccceeeeEec
Confidence            58988753  44567999999999999999954

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.96  E-value=0.024  Score=35.29  Aligned_cols=30  Identities=23%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|.
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEe
Confidence            58888753  4556799999999999999993

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=93.96  E-value=0.035  Score=35.09  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        68 gR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          68 GRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEecccccceeecceeccccCCceEEEEecc
Confidence            68988754  456779999999999999999655

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.95  E-value=0.054  Score=33.53  Aligned_cols=32  Identities=13%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+...|.|.+++.+|++.|.|...
T Consensus        65 gRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          65 GKATLTSDKSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             TCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEeccCceeEeecccccCCCcceEEEEeec
Confidence            68988753  456679999999999999999543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.90  E-value=0.038  Score=34.69  Aligned_cols=31  Identities=10%  Similarity=0.252  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        65 gRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          65 GKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            69988754  56678999999999999999954

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.84  E-value=0.045  Score=34.04  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 gRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          66 GRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            68888753  556789999999999999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.78  E-value=0.032  Score=34.64  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=25.1

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|.
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEE
Confidence            58888753  4566799999999999999994

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.74  E-value=0.07  Score=33.64  Aligned_cols=33  Identities=18%  Similarity=0.354  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|....
T Consensus        67 ~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          67 TRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecceecccccccEEEcccccCCcccceEEEEEEec
Confidence            69988653  4456799999999999999996553

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.71  E-value=0.024  Score=35.83  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            58888754  345669999999999999999654

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.16  Score=28.66  Aligned_cols=51  Identities=10%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++. .++..|.|+|+....  ..|.....   ........++.|.+
T Consensus        13 ~~~~si~v~W~~p~-~~~~~Y~i~~~~~~~--~~~~~~~~---~~~~~~~~i~~L~p   63 (90)
T d1fnha2          13 ATETTITISWRTKT-ETITGFQVDAVPANG--QTPIQRTI---KPDVRSYTITGLQP   63 (90)
T ss_dssp             ECSSEEEEEEECCS-SCCCCEEEEEEESSS--SCCEEEEC---CTTCSEEEEESCCT
T ss_pred             ecCCEEEEEEECCC-CCCceeEEEEEEccC--CceEEEec---CCCccEEEeCCCCC
Confidence            46889999999654 578999999998643  34444432   23344556666654

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=93.65  E-value=0.041  Score=34.38  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|...
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeeccc
Confidence            58888653  445679999999999999999643

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.64  E-value=0.04  Score=34.38  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|....
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDH  102 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEecC
Confidence            58988753  4566799999999999999997643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.045  Score=32.20  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +....+.|.++...|+|.|.|..
T Consensus        51 ~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          51 KVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             SSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CceeEEEecccChhcCceEEEEe
Confidence            45678999999999999999954

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.61  E-value=0.041  Score=34.46  Aligned_cols=32  Identities=13%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 ~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          66 DKAILTADRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEecccCcceEeeeeeccCcccceEEEEeee
Confidence            58888654  456679999999999999999654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.59  E-value=0.068  Score=33.79  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|++|..+  .+...|.+++++.+|++.|.|....
T Consensus        65 gR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          65 GRVTISADESTRTVYLHLRGLRSDDTAVYYCASNS   99 (133)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccEEEEeccCcceeEEeeccCCCCCCEEEEeeecc
Confidence            69998754  4567899999999999999995543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.56  E-value=0.026  Score=35.07  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=26.0

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             TTEEEECCTTTTEEEEEECSCCGGGCEEEECCE
T ss_pred             eeEEEEeccccceEEeeeccccCCcceEEEEcc
Confidence            58999853  55678999999999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=93.54  E-value=0.032  Score=34.57  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      +|+++..  ..+.-.|.|++++.+|++.|.|....
T Consensus        65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             ccceEeccCCCceEEcceeeeeeccceEEEEEEeC
Confidence            4888875  34566799999999999999996543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.48  E-value=0.056  Score=33.92  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeec
Confidence            68888754  456679999999999999999654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.47  E-value=0.055  Score=33.85  Aligned_cols=31  Identities=13%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|..
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTR   98 (124)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEE
T ss_pred             eeEEEEccCCcceEEecccccCCCcceEEEecc
Confidence            68988754  45667999999999999999964

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.033  Score=33.18  Aligned_cols=62  Identities=13%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      .|.+|......  ...+++.|.|.++  .+.+|..|.|+|+...   ..|.....   ....+.+.+++|.+
T Consensus        20 vP~~P~~~~~~--~~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~---~~~~~~~~---~~~~~~~~i~~L~p   83 (113)
T d1x5ia1          20 VPEVPSSLHVR--PLVTSIVVSWTPPENQNIVVRGYAIGYGIGS---PHAQTIKV---DYKQRYYTIENLDP   83 (113)
T ss_dssp             CCCSCSEEEEE--EETTEEEEEEECCSCTTBCCCEEEEEECSSC---GGGEEEEC---CTTCCEEEECSCCS
T ss_pred             CCCCCEeeeee--eCCCEEEEEEEccccCCccEEEEEEEeeecc---ccceeeee---eCCccEEEEecccc
Confidence            45555433211  2357899999964  3568999999998653   23333322   22345566776654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.44  E-value=0.062  Score=33.33  Aligned_cols=31  Identities=19%  Similarity=0.360  Sum_probs=25.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|+++..+  .+...|.|++++.+|++.|.|..
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAG   98 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeE
Confidence            58988753  55678999999999999999954

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.43  E-value=0.025  Score=35.31  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        68 gR~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          68 GRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             TTBCCEECTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             eeeEEccccccceeeceecccCCCcceEEEEecc
Confidence            58888754  456679999999999999999654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.38  E-value=0.066  Score=33.92  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=26.7

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEEc
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      .|+++..+  .+.-.|.|.+++.+|++.|.|....
T Consensus        66 gRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          66 GRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             TTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             EeEEEeccCCCceeEecEeeeCcccceeeEEEEec
Confidence            68998764  3455799999999999999996544

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.066  Score=30.45  Aligned_cols=51  Identities=8%  Similarity=0.195  Sum_probs=33.3

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++. .++..|.++|+....  ..|.  .....+...+...+..|.+
T Consensus        14 t~~sv~l~W~~p~-~~~~~y~i~~~~~~~--~~~~--~~~~~~~~~~~~~i~~L~p   64 (94)
T d1j8ka_          14 DVDSIKIAWESPQ-GQVSRYRVTYSSPED--GIHE--LFPAPDGEEDTAELQGLRP   64 (94)
T ss_dssp             ETTEEEEECCCCS-SCCSCEEEEEEETTT--EEEE--ECCCCCSSCCEEEECSCCC
T ss_pred             cCCEEEEEEeCCC-ccccceEEEEEeecC--CCce--EEEecCCCccEEEECCCCC
Confidence            5789999999764 468899999998743  2222  2223344556667766654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.35  E-value=0.04  Score=34.75  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|++|..+  .+.-.|.|++++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          65 GRVTFTADQATSTAYMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeeEEeccCCccEEEEEeeccCCCCcEEEEEEee
Confidence            58988754  445679999999999999999654

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.087  Score=29.86  Aligned_cols=51  Identities=14%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++. .++..|.|+|+.... ...+......   ...+++.+..|.+
T Consensus         9 t~~sv~l~W~~p~-~~~~~Y~v~~~~~~~-~~~~~~~~~~---~~~t~~~l~~L~p   59 (91)
T d1fnaa_           9 TPTSLLISWDAPA-VTVRYYRITYGETGG-NSPVQEFTVP---GSKSTATISGLKP   59 (91)
T ss_dssp             CSSCEEEECCCCS-SCCSEEEEEEEETTC-CSCCEEEEEE---TTCCEEEECSCCT
T ss_pred             CCCEEEEEEEccc-eEecEEEEEEEcCCC-CceeEEEEeC---CCccEEEeCCCCC
Confidence            5788999999754 468899999998743 2222232222   2334566666654

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.095  Score=29.46  Aligned_cols=51  Identities=18%  Similarity=0.276  Sum_probs=32.1

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++. .++..|.|+|+....  ..|... .. .....+.+.+.+|.+
T Consensus        13 ~~~s~~l~W~~p~-~~i~~Y~i~~~~~~~--~~~~~~-~~-~~~~~~~~~~~~L~p   63 (89)
T d1fnha3          13 TPNSLLVSWQPPR-ARITGYIIKYEKPGS--PPREVV-PR-PRPGVTEATITGLEP   63 (89)
T ss_dssp             ETTEEEEEEECCS-SCCSEEEEEEECTTS--CCEECT-TC-CCTTCCEEEEESCCT
T ss_pred             cCCEEEEEEeCCC-cCCceEEEEEeeccC--CccEEE-EE-cCCCccEEEEEeeeC
Confidence            5789999999754 578999999997643  333222 11 122344566776655

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.28  E-value=0.043  Score=34.46  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|.
T Consensus        66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          66 DRVTFTADTSANTAYMELRSLRSADTAVYYCA   97 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccceEecccCceEEEEEEEccCCCCceEEEEE
Confidence            68888754  4566799999999999999994

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.037  Score=32.77  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeCCC--------CCCcceEEEeEEcCC
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVSSY--------TPLEEFKIKYRKIPG   95 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~s~--------~pi~~y~v~yr~~~~   95 (123)
                      .+|.||.-+..  ....+.+.|+|..+..        ..+..|.++|+....
T Consensus         4 vkP~pP~nl~v--~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~   53 (114)
T d2gysa2           4 VQPPEPRDLQI--STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQD   53 (114)
T ss_dssp             BCCCCCEEEEE--EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTS
T ss_pred             ccCCcCCCeEE--EEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCC
Confidence            36777765542  2356789999997421        124579999998754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.16  E-value=0.043  Score=33.95  Aligned_cols=31  Identities=13%  Similarity=0.321  Sum_probs=25.6

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      +|+++..+  .+.-.|.|++++.+|++.|.|..
T Consensus        66 gR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEecccccceeEecccccCCCCceEEEEcc
Confidence            58988744  45668999999999999999953

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.052  Score=31.26  Aligned_cols=40  Identities=13%  Similarity=0.029  Sum_probs=26.7

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeCC--CCCCcceEEEeEEcC
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIP   94 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~s--~~pi~~y~v~yr~~~   94 (123)
                      +|.+|...... .....++.|.|.+..  +.+ ..|.|+|+...
T Consensus         3 PP~~P~n~~~~-~~~~~si~~~W~p~~~~~~~-~~y~v~~~~~~   44 (95)
T d1bqua1           3 PPEKPKNLSCI-VNEGKKMRCEWDGGRETHLE-TNFTLKSEWAT   44 (95)
T ss_dssp             CCCCCEEEEEE-EETTSCCEEEEECCSCCSSC-CEEEEEEEETT
T ss_pred             CcCCCeeeEEE-EccCCEEEEEEeCcccCCCc-eEEEEEEEEcc
Confidence            56676644321 235678999999743  344 68999999863

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.13  Score=28.93  Aligned_cols=28  Identities=14%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCC
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~   95 (123)
                      ..+++.|.|.++. ..+..|.|+|+....
T Consensus        14 s~~si~l~W~~p~-~~~~~Y~i~y~~~~~   41 (92)
T d1qg3a1          14 GSRKIHFNWLPPS-GKPMGYRVKYWIQGD   41 (92)
T ss_dssp             STTCEEEEEECCS-SCCCEEEEEEEETTS
T ss_pred             cCCEEEEEEEecC-CCccceEEeeeeccc
Confidence            5789999999864 457899999998754

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.085  Score=31.43  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCCeEEEEEEeC----CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS----SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~----s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...++.|.|.+.    .+.+|.+|.|.|+....  ..|..  .....+......+.+|.+
T Consensus        24 ~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~--~~~~~--~~~~~~~~~~~~i~~L~p   79 (119)
T d1x5ha1          24 NSKSIMIHWQPPAPATQNGQITGYKIRYRKASR--KSDVT--ETLVSGTQLSQLIEGLDR   79 (119)
T ss_dssp             SSSEEEEEEECCCTTTCCSCEEEEBCEEEETTE--EEEEE--CCBCCTTCCEEEEECCCS
T ss_pred             cCcEEEEEEEcccccCCCCCEEEEEEEEeeccc--cccee--eeecCCCccEEEeCCCCC
Confidence            578899999963    23478999999988643  22221  112233344556666544

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=92.75  E-value=0.048  Score=33.81  Aligned_cols=31  Identities=13%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEA   37 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A   37 (123)
                      .|++|..+  .+...|.|++++.+|++.|.|..
T Consensus        66 gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          66 DKARLTVDTSSSTAYMQFSSLTTEDSAIYYCAR   98 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEecCccceEEecccccCCCcceEEEEee
Confidence            58888643  45667999999999999999954

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.0087  Score=35.42  Aligned_cols=30  Identities=13%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEEeC--CCCCCcceEEEeEEcCC
Q psy17207         66 RLPNSYNITWMVS--SYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        66 ~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~~   95 (123)
                      ...+++.|.|.++  .+.+|.+|.|+|+....
T Consensus        16 ~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~   47 (102)
T d2dtge1          16 FENNVVHLMWQEPKEPNGLIVLYEVSYRRYGD   47 (102)
T ss_dssp             SSSSCCCCCCCCCCSCSSCEEEECCCCBSSSB
T ss_pred             ECCCEEEEEEEeCCCCcceEEEeeeEEEecCC
Confidence            3578899999964  35689999999998643

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.25  Score=27.83  Aligned_cols=50  Identities=8%  Similarity=0.068  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++. .++..|.|.|+...   ..+.....   ....+++.+.+|.+
T Consensus        13 ~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~---~~~~~~~~---~~~~~~~~i~~L~p   62 (93)
T d2cuma1          13 VTPRTALLTWTEPP-VRPAGYLLSFHTPG---GQTQEILL---PGGITSHQLLGLFP   62 (93)
T ss_dssp             CCSSCEEEEEECCS-SCCSEEEEEEECTT---SCEEEEEE---CSSCSEEEECSCCT
T ss_pred             eCCCEEEEEEEccc-cccccEEEEEEccc---cccEEEEE---CCCccEEEEeCccC
Confidence            35789999999754 46889999998753   23433332   23445667776654

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.57  E-value=0.25  Score=27.48  Aligned_cols=50  Identities=6%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++. .++..|.|.|+...   ..+.....   ....+.+.+.+|.+
T Consensus        11 ~t~~sv~v~W~~p~-~~~~~Y~v~~~~~~---~~~~~~~~---~~~~~~~~~~~L~p   60 (87)
T d1qr4a1          11 PTETTLSLRWRRPV-AKFDRYRLTYVSPS---GKKNEMEI---PVDSTSFILRGLDA   60 (87)
T ss_dssp             CCSSEEEEEEECCS-SCCSEEEEEEECTT---CCEEEEEE---CTTCSEEEEESCCS
T ss_pred             ecCCEEEEEEECCC-CCcceeEEEeecCC---cceeEEeC---CCCcCEEEECCCCc
Confidence            35789999999754 46889999998753   23433332   23345567776655

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.40  E-value=0.04  Score=34.08  Aligned_cols=32  Identities=19%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      .|++|..+  .+.-.|.+++++.+|++.|.|...
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~   98 (116)
T d1fn4b1          65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRD   98 (116)
T ss_dssp             TTBCCEEEGGGTEEECCEESCCCCCCEEEEEEEE
T ss_pred             ceEEEccccccchhhcceeccCCCCCEEEEEEee
Confidence            58877643  445679999999999999999654

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.25  Score=28.10  Aligned_cols=63  Identities=10%  Similarity=0.026  Sum_probs=32.1

Q ss_pred             cCCCceeecC---CCCCCCCeEEEEEEeCC------CCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeee
Q psy17207         53 KPNPAIFRSH---PQGRLPNSYNITWMVSS------YTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKIT  121 (123)
Q Consensus        53 ~P~p~~~~~~---~~~~~~~~~~L~w~~~s------~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  121 (123)
                      +|+||.-...   ......+.+.|+|.++.      ...+..|.++|+....  ..|....    ....+.+.+.+|.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~--~~~~~~~----~~~~~~~~i~~L~   73 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA--AEWEIHF----AGQQTEFKILSLH   73 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTC--SSCEEEE----EETCSEEEECC--
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccc--cceeeec----cccccEEEECCCC
Confidence            5777754422   12235678999999743      2345678888887643  4454332    2233444455443

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.059  Score=31.15  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=23.6

Q ss_pred             ccCCCceeecCCCCCCCCeEEEEEEeCC---CCCCcceEEEeEEcCC
Q psy17207         52 GKPNPAIFRSHPQGRLPNSYNITWMVSS---YTPLEEFKIKYRKIPG   95 (123)
Q Consensus        52 ~~P~p~~~~~~~~~~~~~~~~L~w~~~s---~~pi~~y~v~yr~~~~   95 (123)
                      .++.||.+..   ....+++.|.|..+.   ...+..|.|+|+....
T Consensus         4 Vk~~Pp~l~v---~~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~   47 (100)
T d2gysa4           4 IQMAPPSLQV---TKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTA   47 (100)
T ss_dssp             BCCCCCEEEE---C---CCCEEEEEC--------CEEEEEEEECSSS
T ss_pred             ccCCCCccEE---EECCCEEEEEEecCcccCCccceEEEEEEeeccc
Confidence            3566665432   234678999999643   2456789999997643

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.29  Score=27.27  Aligned_cols=52  Identities=10%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...+++.|.|.++. .++..|.++|+..... ..+....   .+...+++.+..|.+
T Consensus        11 v~~~si~l~W~~p~-~~~~~~~i~~~~~~~~-~~~~~~~---~~~~~~~~~i~~L~p   62 (90)
T d1fnha1          11 VTPTSLSAQWTPPN-VQLTGYRVRVTPKEKT-GPMKEIN---LAPDSSSVVVSGLMV   62 (90)
T ss_dssp             ECSSCEEEEEECCS-SCCSEEEEEEEESSSC-SCCCEEE---ECTTCCEEEECSCCT
T ss_pred             ecCCEEEEEEEccc-eeccceEEEEEeeeCC-CceEEEE---eCCCCeEEEEecccC
Confidence            35889999999753 4677899999887542 2233222   234445566776654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=92.18  E-value=0.057  Score=33.89  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=26.1

Q ss_pred             CCEEEEE--cCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMET--RGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~--~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..  ..+.-.|.|++++.+|++.|.|...
T Consensus        66 gR~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          66 DRLSITRDTSKNQFFLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             TTBCCEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeecccccceeecceeccccccceEEEeeee
Confidence            5887764  3556789999999999999999654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.16  E-value=0.072  Score=33.26  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=25.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCE   36 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~   36 (123)
                      +|++|..+  .+.-.|.|++++.+|++.|.|.
T Consensus        66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCA   97 (124)
T d2b1hh1          66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCA   97 (124)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             eeEEEeecCCCcEEEEeeeccccccceEEEEe
Confidence            68888754  4456799999999999999994

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.07  E-value=0.32  Score=27.41  Aligned_cols=51  Identities=14%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|+|.++. .++..|.+.|+.... ...+.+.....   ..+...+++|.+
T Consensus        16 ~~~si~v~W~~p~-~~~~~y~i~~~~~~~-~~~~~~~~~~~---~~~~~~i~~L~p   66 (93)
T d1tdqa1          16 SDTVAFVEWTPPR-AKVDFILLKYGLVGG-EGGKTTFRLQP---PLSQYSVQALRP   66 (93)
T ss_dssp             CSSCEEEEEECCS-SCCSEEEEEEEESSS-SCCCEEEEECT---TCSEEEECSCCT
T ss_pred             CCCEEEEEEEccc-cCCCceEEEEEeccC-cceeeEEEeCC---CceEEEEeCccc
Confidence            5678999999754 578899999998754 23333433322   234455666554

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.032  Score=33.04  Aligned_cols=24  Identities=17%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +....+.|.++...|+|.|.|.-.
T Consensus        53 ~~~a~F~l~~v~~~~~G~Y~C~y~   76 (96)
T d1ucta2          53 EHPANFSLGPVDLNVSGIYRCYGW   76 (96)
T ss_dssp             SSSEEEECCSCCGGGCEEEEEEEE
T ss_pred             CcccEEEEeccccccCcEEEEEEE
Confidence            345689999999999999999655

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=92.06  E-value=0.039  Score=32.68  Aligned_cols=22  Identities=18%  Similarity=0.465  Sum_probs=19.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      ...+.|.++...|+|.|.|.-.
T Consensus        56 ~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1          56 KANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEcccCcccCeEEEEEEE
Confidence            4579999999999999999654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=92.05  E-value=0.13  Score=31.77  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             CCEEEEEc--CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETR--GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~--~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|++|..+  .+...|.|++++.+|++.|.|...
T Consensus        65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEeccccceeeeeccccccCCcceEEEeccc
Confidence            58888753  456679999999999999999654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.047  Score=32.21  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             EEEEEEcccCCCCCeeEEEEEE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      ...+.|.++...|+|.|.|.-.
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEe
Confidence            3479999999999999999643

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.12  Score=29.63  Aligned_cols=28  Identities=11%  Similarity=0.374  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEEeCCCCCCcceEEEeEEcC
Q psy17207         66 RLPNSYNITWMVSSYTPLEEFKIKYRKIP   94 (123)
Q Consensus        66 ~~~~~~~L~w~~~s~~pi~~y~v~yr~~~   94 (123)
                      ...+++.|.|.++. .++..|.|+|+...
T Consensus        15 ~t~~sv~v~W~pp~-~~~~~y~i~~~~~~   42 (101)
T d2cuia1          15 VTTSSLRLNWEAPP-GAFDSFLLRFGVPS   42 (101)
T ss_dssp             CCSSCEEEECCCCT-TSCSEEEEEEECCC
T ss_pred             ECCCEEEEEEEecc-ccccceEEEEEecC
Confidence            35789999998653 46888999998764

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.28  Score=27.42  Aligned_cols=51  Identities=4%  Similarity=0.004  Sum_probs=31.1

Q ss_pred             CCCeEEEEEEeC---CCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ..+++.|.|.++   +..++..|.++|+....  ..|......   .......+.+|.+
T Consensus        13 ~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~---~~~~~~~v~~L~p   66 (96)
T d1x5xa1          13 GITWLSLQWSKPSGTPSDEGISYILEMEEETS--GYGFKPKYD---GEDLAYTVKNLRR   66 (96)
T ss_dssp             CSSEEEEECCCCSSCCSSSSCEEEEEECCSSS--SCCCEEEEE---ESCSEEEEESCCS
T ss_pred             cCCEEEEEEEeecccCcceEeeeEEEeeeccc--eeeeEEeec---CCCCEEEECCCCC
Confidence            578999999964   34678888888876532  344433322   2334455666544

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.41  Score=27.59  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             cCCCceeecC-CCCCCCCeEEEEEEeCC-----CCCCcceEEEeEEcCCCCCCceeee
Q psy17207         53 KPNPAIFRSH-PQGRLPNSYNITWMVSS-----YTPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        53 ~P~p~~~~~~-~~~~~~~~~~L~w~~~s-----~~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      +|.||.-... ......+.+.|.|..+.     ...+..|.++|+....  ..|..+-
T Consensus         7 kP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~   62 (109)
T d1uc6a_           7 KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLIL--DQWQHVE   62 (109)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSS--CCCCCEE
T ss_pred             ECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCC--CceEEec
Confidence            6787754432 12235678999999642     2345679999988654  5565543

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.16  Score=28.99  Aligned_cols=41  Identities=17%  Similarity=0.138  Sum_probs=25.4

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeCC----CCCCcceEEEeEEcCC
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVSS----YTPLEEFKIKYRKIPG   95 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~s----~~pi~~y~v~yr~~~~   95 (123)
                      +.||.-+.. ...+++++.|+|....    ...+..|.+.|+....
T Consensus         3 l~pP~~l~v-~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~   47 (104)
T d2b5ib2           3 LMAPISLQV-VHVETHRCNISWEISQASHYFERHLEFEARTLSPGH   47 (104)
T ss_dssp             CCCCEEEEE-EEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTS
T ss_pred             cCCCCCcEE-EEEeCCEEEEEEccccccccccceeEEEEEEecccc
Confidence            455544432 2235789999999643    2445678888877643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=90.10  E-value=0.11  Score=30.65  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=19.1

Q ss_pred             CCEEEEEEcccCCCCCeeEEEEEE
Q psy17207         15 GSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus        15 ~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +....+.|..+...|+|.|.|.-.
T Consensus        56 ~~~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2          56 NGTFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             TTEEEEEEEEEECCSCEEEEEEEE
T ss_pred             CccEEEEEeccccccCEEEEEEee
Confidence            334567889999999999999654

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.10  E-value=0.53  Score=26.05  Aligned_cols=49  Identities=12%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CCCeEEEEEEeCCCCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         67 LPNSYNITWMVSSYTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        67 ~~~~~~L~w~~~s~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ...++.|.|.++. .++..|.|.|+....   .+.....   ....+++.+.+|.+
T Consensus        13 ~~~s~~l~W~~p~-~~~~~Y~v~~~~~~~---~~~~~~~---~~~~~~~~~~~L~p   61 (86)
T d1tdqa3          13 SETSISLIWTKAS-GPIDHYRITFTPSSG---ISSEVTV---PRDRTSYTLTDLEP   61 (86)
T ss_dssp             CSSCEEEEEECCC-SCCSEEEEEEECSSS---CCEEEEE---ESSCSEEEECCCCT
T ss_pred             cCCEEEEEEeCCC-CCccceEEEEecccc---cceEEEe---CCCccEEEECCCcc
Confidence            5788999999764 468899999987532   2222222   23345566666654

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.28  Score=28.37  Aligned_cols=35  Identities=9%  Similarity=-0.076  Sum_probs=24.9

Q ss_pred             CCeEEEEEEeCCC-CCCcceEEEeEEcCCCCCCceeee
Q psy17207         68 PNSYNITWMVSSY-TPLEEFKIKYRKIPGNEPSPMSNQ  104 (123)
Q Consensus        68 ~~~~~L~w~~~s~-~pi~~y~v~yr~~~~~~~~w~~~~  104 (123)
                      ...+.|.|+++.. .....|.|+|+....  ..|..+.
T Consensus        16 n~~~~L~W~pp~~~g~~~~Y~Ve~~~~~~--~~W~~v~   51 (99)
T d1y6kr1          16 FFHHILHWTPIPQQSESTCYEVALLRYGI--ESWNSIS   51 (99)
T ss_dssp             TTEEEEEECCCTTCCTTCEEEEEEEETTS--CCCEEEE
T ss_pred             CCEEEEEEcCCCCcCCCCEEEEEEEECCC--cceEEEE
Confidence            3467899996543 445679999998653  6788764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.42  E-value=0.26  Score=28.93  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=22.7

Q ss_pred             EEEEEEcccCCCCCeeEEEEEEcCCceeE
Q psy17207         17 RHTLMIRKVVASDFGNYSCEATNPMGKHR   45 (123)
Q Consensus        17 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~   45 (123)
                      .-.|.+..+-.+|.|.|.|.|.=.-|..+
T Consensus        67 ~FvLhF~pvl~sDnGsYrCSanf~s~vie   95 (104)
T d1xaua_          67 VFVLHFKPIHLSDNGSYSCSTNFNSQVIN   95 (104)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEeeeeeecCCCceEEecCCChhhee
Confidence            34689999999999999999875544443

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.45  Score=27.19  Aligned_cols=22  Identities=18%  Similarity=0.505  Sum_probs=16.1

Q ss_pred             CEEEEEEcccCCCCCeeEEEEEEc
Q psy17207         16 SRHTLMIRKVVASDFGNYSCEATN   39 (123)
Q Consensus        16 ~~~~L~I~~v~~~D~G~YtC~A~N   39 (123)
                      ....+.|..  ..|+|.|+|+-.+
T Consensus        48 ~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          48 QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             SEEEEEECG--GGCCEEEEEEEES
T ss_pred             CceEEEEec--CCCCceEEEEEcC
Confidence            345677765  7899999998553

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.27  E-value=0.25  Score=28.59  Aligned_cols=41  Identities=20%  Similarity=0.139  Sum_probs=26.0

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeC--CCCCCcceEEEeEEcC
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVS--SYTPLEEFKIKYRKIP   94 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~--s~~pi~~y~v~yr~~~   94 (123)
                      +|.+|...........+++.++|.++  ++.|+ .|.+.|+...
T Consensus         4 PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~~-~y~~~y~~~~   46 (107)
T d1cd9b1           4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPT-SFILKSFRSR   46 (107)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCSCCSSCC-EEEEEEEECC
T ss_pred             ccCCCcCCEEEEecCCCEEEEEEcCCCCCCCCc-ceeEEEEEee
Confidence            56777654322223578999999974  45664 6777776653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.18  Score=29.83  Aligned_cols=27  Identities=11%  Similarity=0.075  Sum_probs=19.5

Q ss_pred             EEEEEcccCCCCCeeEEEEEEcCCcee
Q psy17207         18 HTLMIRKVVASDFGNYSCEATNPMGKH   44 (123)
Q Consensus        18 ~~L~I~~v~~~D~G~YtC~A~N~~G~~   44 (123)
                      +.|++.-....|...|+|+|+|.++..
T Consensus        64 s~l~~~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          64 LEVTFTPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             EEEEccCChHHCCcEEEEEEEcCcCCc
Confidence            467777555555568999999987553

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.24  Score=30.48  Aligned_cols=41  Identities=7%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             CCCceeecCCCCCCCCeEEEEEEeCC--CCCCcceEEEeEEcCC
Q psy17207         54 PNPAIFRSHPQGRLPNSYNITWMVSS--YTPLEEFKIKYRKIPG   95 (123)
Q Consensus        54 P~p~~~~~~~~~~~~~~~~L~w~~~s--~~pi~~y~v~yr~~~~   95 (123)
                      |.+|.-... ......++.|.|.++.  +.+|..|.|.|+....
T Consensus         3 Ps~P~~~~~-~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~   45 (196)
T d2dtge2           3 PSVPLDPIS-VSNSSSQIILKWKPPSDPNGNITHYLVFWERQAE   45 (196)
T ss_dssp             CCCCEEEEE-EECSSSCEEEEEECCCCSSSSCSEEECCEEEECC
T ss_pred             CcCCcCCEE-EeccCCEEEEEEECCCCCCCcEEEEEEEEEcCCC
Confidence            555554422 2236889999999753  3579999999998754

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.11  Score=31.12  Aligned_cols=29  Identities=17%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             CCCeEEEEEEeC---CCCCCcceEEEeEEcCC
Q psy17207         67 LPNSYNITWMVS---SYTPLEEFKIKYRKIPG   95 (123)
Q Consensus        67 ~~~~~~L~w~~~---s~~pi~~y~v~yr~~~~   95 (123)
                      +++++.|+|.++   ....|..|.|.|+....
T Consensus        14 sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~   45 (125)
T d2dtge3          14 SFDKILLRWEPYWPPDFRDLLGFMLFYKEAPY   45 (125)
T ss_dssp             CSSCEEEECCCCCSSSCCCEEEECCCSSSCCT
T ss_pred             cCCEEEEEEeCCCccCCCcEEEEEEEEEECCC
Confidence            688999999964   34678999999988654

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=87.62  E-value=0.3  Score=27.45  Aligned_cols=37  Identities=11%  Similarity=0.288  Sum_probs=23.0

Q ss_pred             cCCCceeecCCCCCCCCeEEEEEEeCC-CCCCcceEEEe
Q psy17207         53 KPNPAIFRSHPQGRLPNSYNITWMVSS-YTPLEEFKIKY   90 (123)
Q Consensus        53 ~P~p~~~~~~~~~~~~~~~~L~w~~~s-~~pi~~y~v~y   90 (123)
                      .|.+|..+.. .....+++.|+|.+.. ...+..|.+.+
T Consensus         3 AP~~P~~l~~-~~~~~~sv~lsW~~p~~~~~i~~Y~i~~   40 (88)
T d1k85a_           3 APTAPTNLAS-TAQTTSSITLSWTASTDNVGVTGYDVYN   40 (88)
T ss_dssp             SCCCCEEEEE-EEECSSCEEEEEECCSCCSSEEEEEEEE
T ss_pred             CcCCCCCcEE-EEecCCEEEEEEeCCCCCCCEEEEEEEc
Confidence            4666654322 1235789999999754 34677787754

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.44  E-value=0.43  Score=28.07  Aligned_cols=29  Identities=14%  Similarity=0.328  Sum_probs=22.6

Q ss_pred             CCCCeEEEEEEe--C--CCCCCcceEEEeEEcC
Q psy17207         66 RLPNSYNITWMV--S--SYTPLEEFKIKYRKIP   94 (123)
Q Consensus        66 ~~~~~~~L~w~~--~--s~~pi~~y~v~yr~~~   94 (123)
                      ...+.+.|.|..  .  .+.+|..|.|+|+...
T Consensus        29 ~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~   61 (117)
T d1wj3a_          29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS   61 (117)
T ss_dssp             EETTEEEEECCCCCCCSSSCCEEEEEEEEEESS
T ss_pred             ecCCEEEEEEeecccccCCCceeEEEEEEEecC
Confidence            357889999985  2  3468999999999864

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.28  E-value=0.53  Score=26.50  Aligned_cols=52  Identities=15%  Similarity=0.182  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEEeCC------CCCCcceEEEeEEcCCCCCCceeeeeccccccccceeeeeeec
Q psy17207         66 RLPNSYNITWMVSS------YTPLEEFKIKYRKIPGNEPSPMSNQLTGTNQYQNRRLVRKITE  122 (123)
Q Consensus        66 ~~~~~~~L~w~~~s------~~pi~~y~v~yr~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  122 (123)
                      ....++.|.|.++.      ...+..|.+.|+........|.....+     .....+.+|.+
T Consensus        13 ~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~-----~~~~~i~~L~p   70 (100)
T d1x5ja1          13 LSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANAT-----TLSYLVTGLKP   70 (100)
T ss_dssp             EETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBC-----SSEEEEESCCT
T ss_pred             ecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCC-----ccEEEECCCCC
Confidence            36889999999631      245677899988876544444443322     22345555544

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=85.57  E-value=0.34  Score=28.71  Aligned_cols=31  Identities=10%  Similarity=0.104  Sum_probs=22.0

Q ss_pred             CCEEEEEcCCEEEEEEcccCCCCCeeEEEEEE
Q psy17207          7 ERRIMETRGSRHTLMIRKVVASDFGNYSCEAT   38 (123)
Q Consensus         7 ~R~~i~~~~~~~~L~I~~v~~~D~G~YtC~A~   38 (123)
                      +|+..... ....|.|...+.+|++.|.|...
T Consensus        64 ~~f~~~~~-~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          64 ADYLATRV-TDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             EEEEEEEE-ETTEEEEEEESCCSCEEEEEEEE
T ss_pred             cccccccc-cccEEEEecCCccCCccEEEEEe
Confidence            45654422 22468888889999999999754

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=0.36  Score=28.00  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=15.8

Q ss_pred             EEEEcccCCCCCeeEEEEEEcCCceeEE
Q psy17207         19 TLMIRKVVASDFGNYSCEATNPMGKHRA   46 (123)
Q Consensus        19 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~   46 (123)
                      +|+|.-=...|+|+|+|. ++  |+--.
T Consensus        52 tltV~VkE~~~aGnYTCh-k~--g~~Ln   76 (87)
T d3d85d1          52 TLTIQVKEFGDAGQYTCH-KG--GEVLS   76 (87)
T ss_dssp             EEEEEECSGGGCEEEEEE-ET--TEEEE
T ss_pred             EEEEEEEeccCCcceeEe-CC--CcEee
Confidence            455554445799999996 33  55443