Psyllid ID: psy17211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEHccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLyshwpfgemyckVNYFITNITVAASVFTLVAISLDRFVEA
Flexible Loop (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Low Complexity Region (SEG)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Disordered region (IsUnstruct)
***VTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRF***
Disordered Region (DISOPRED)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Disordered Region (DISEMBL)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Disordered Region (DISPRO)
*RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
P30974	504	Tachykinin-like peptides	no	N/A	0.972	0.138	0.671	5e-23
P30975	519	Tachykinin-like peptides	no	N/A	0.972	0.134	0.6	6e-19
P29371	465	Neuromedin-K receptor OS=	yes	N/A	0.972	0.150	0.5	2e-13
O97512	467	Neuromedin-K receptor OS=	yes	N/A	0.972	0.149	0.5	3e-13
P16177	452	Neuromedin-K receptor OS=	yes	N/A	0.972	0.154	0.485	8e-13
Q98982	408	Substance-P receptor OS=L	N/A	N/A	0.972	0.171	0.471	2e-12
Q924H0	417	Neuropeptide FF receptor	yes	N/A	0.958	0.165	0.449	2e-12
P47937	452	Neuromedin-K receptor OS=	no	N/A	0.972	0.154	0.471	3e-12
Q9WVD0	383	Neuropeptide Y receptor t	no	N/A	0.944	0.177	0.455	5e-12
Q9EQD2	417	Neuropeptide FF receptor	no	N/A	0.958	0.165	0.449	5e-12

>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

May play a role in neurogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|P30975|TLR2_DROME Tachykinin-like peptides receptor 99D OS=Drosophila melanogaster GN=Takr99D PE=2 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 56/70 (80%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY++VNLS+AD  ++  N  FN+ YML S WPFGE YCK++ FI  +++ ASVFT
Sbjct: 132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query: 61  LVAISLDRFV 70
           L+AIS+DR+V
Sbjct: 192 LMAISIDRYV 201

Probable receptor for tachykinin-like peptides.

Drosophila melanogaster (taxid: 7227)

>sp|P29371|NK3R_HUMAN Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 116 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 175

Query: 61  LVAISLDRFV 70
           + AI++DR++
Sbjct: 176 MTAIAVDRYM 185

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Homo sapiens (taxid: 9606)

>sp|O97512|NK3R_RABIT Neuromedin-K receptor OS=Oryctolagus cuniculus GN=TACR3 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 118 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 177

Query: 61  LVAISLDRFV 70
           + AI++DR++
Sbjct: 178 MTAIAVDRYM 187

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P16177|NK3R_RAT Neuromedin-K receptor OS=Rattus norvegicus GN=Tacr3 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  +A FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLINFIYGLHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LVAISLDRFV 70
           + AI++DR++
Sbjct: 163 MTAIAVDRYM 172

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system. The rank order of affinity of this receptor to tachykinins is: neuromedin-K > substance K > substance P.

Rattus norvegicus (taxid: 10116)

>sp|Q98982|NK1R_LITCT Substance-P receptor OS=Lithobates catesbeiana GN=TACR1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  M+ FN V NF Y +++HW +G +YCK + F     V  S+++
Sbjct: 64  MRTVTNYFLVNLAFAEASMSAFNTVINFTYAIHNHWYYGLIYCKFHNFFPISAVFTSIYS 123

Query: 61  LVAISLDRFV 70
           + AI+LDR++
Sbjct: 124 MTAIALDRYM 133

This is a receptor for the tachykinin neuropeptide substance P. It is probably associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Lithobates catesbeiana (taxid: 8400)

>sp|Q924H0|NPFF2_MOUSE Neuropeptide FF receptor 2 OS=Mus musculus GN=Npffr2 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 49/69 (71%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M TVTN++++NL+++DL + +F      +  + + WPFG   CK++  +  I+VAASVFT
Sbjct: 76  MHTVTNFFILNLAISDLLVGIFCMPITLLDNIIAGWPFGSSMCKISGLVQGISVAASVFT 135

Query: 61  LVAISLDRF 69
           LVAI++DRF
Sbjct: 136 LVAIAVDRF 144

Receptor for NPAF (A-18-F-amide) and NPFF (F-8-F-amide) neuropeptides, also known as morphine-modulating peptides. Can also be activated by a variety of naturally occurring or synthetic FMRF-amide like ligands. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|P47937|NK3R_MOUSE Neuromedin-K receptor OS=Mus musculus GN=Tacr3 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 49/70 (70%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ +D  +A FN + NFIY ++S W FG  YC+   F     V AS+++
Sbjct: 103 MRTVTNYFLVNLAFSDASVAAFNTLVNFIYGVHSEWYFGANYCRFQNFFPITAVFASIYS 162

Query: 61  LVAISLDRFV 70
           + AI++DR++
Sbjct: 163 MTAIAVDRYM 172

This is a receptor for the tachykinin neuropeptide neuromedin-K (neurokinin B). It is associated with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Mus musculus (taxid: 10090)

>sp|Q9WVD0|NPY1R_CAVPO Neuropeptide Y receptor type 1 OS=Cavia porcellus GN=NPY1R PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MR VTN  +VNLS +DL +A+    F F+Y L  HW FGE+ CK+N F+  +++  S+F+
Sbjct: 71  MRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWIFGEIMCKLNPFVQCVSITVSIFS 130

Query: 61  LVAISLDR 68
           LV I+++R
Sbjct: 131 LVLIAVER 138

Receptor for neuropeptide Y and peptide YY.

Cavia porcellus (taxid: 10141)

>sp|Q9EQD2|NPFF2_RAT Neuropeptide FF receptor 2 OS=Rattus norvegicus GN=Npffr2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 48/69 (69%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M TVTN+++ NL+++DL + +F      +  + + WPFG   CK++  +  I+VAASVFT
Sbjct: 76  MHTVTNFFIFNLAISDLLVGIFCMPITLLDNIIAGWPFGSSMCKISGLVQGISVAASVFT 135

Query: 61  LVAISLDRF 69
           LVAI++DRF
Sbjct: 136 LVAIAVDRF 144

Receptor for NPAF (A-18-F-amide) and NPFF (F-8-F-amide) neuropeptides, also known as morphine-modulating peptides. Can also be activated by a variety of naturally occurring or synthetic FMRF-amide like ligands. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
321466116	327	hypothetical protein DAPPUDRAFT_54432 [D	0.972	0.214	0.742	9e-23
321466118	382	hypothetical protein DAPPUDRAFT_54510 [D	0.972	0.183	0.728	1e-22
161078177	555	Tachykinin-like receptor at 86C, isoform	0.972	0.126	0.671	1e-21
195330051	528	GM26156 [Drosophila sechellia] gi|194120	0.972	0.132	0.671	1e-21
157970	504	tachykinin receptor [Drosophila melanoga	0.972	0.138	0.671	1e-21
195571943	504	GD20709 [Drosophila simulans] gi|1941998	0.972	0.138	0.671	2e-21
195499840	505	GE24673 [Drosophila yakuba] gi|194183219	0.972	0.138	0.671	2e-21
24645737	504	Tachykinin-like receptor at 86C, isoform	0.972	0.138	0.671	2e-21
194902235	506	GG17272 [Drosophila erecta] gi|190652355	0.972	0.138	0.671	2e-21
195107430	530	GI23895 [Drosophila mojavensis] gi|19391	0.972	0.132	0.671	2e-21

>gi|321466116|gb|EFX77113.1| hypothetical protein DAPPUDRAFT_54432 [Daphnia pulex]

 Score =  110 bits (275), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+TVTNY+LVNLSLADL M++FNC+FNF +ML SHWPFG  YC VN FI N+TVAASVFT
Sbjct: 62  MKTVTNYFLVNLSLADLTMSLFNCIFNFTFMLNSHWPFGGFYCTVNNFIANVTVAASVFT 121

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 122 LVAISFDRYI 131

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466118|gb|EFX77115.1| hypothetical protein DAPPUDRAFT_54510 [Daphnia pulex]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 61/70 (87%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+TVTNY+LVNLSLADL M+VFNCVFNF +ML +HWPFG  YC VN F+ N++VAASVFT
Sbjct: 63  MKTVTNYFLVNLSLADLTMSVFNCVFNFTFMLNNHWPFGGFYCTVNNFVANVSVAASVFT 122

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 123 LVAISFDRYI 132

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161078177|ref|NP_001097741.1| Tachykinin-like receptor at 86C, isoform B [Drosophila melanogaster] gi|116875698|gb|ABK30899.1| IP02824p [Drosophila melanogaster] gi|158030215|gb|ABW08638.1| Tachykinin-like receptor at 86C, isoform B [Drosophila melanogaster]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330051|ref|XP_002031722.1| GM26156 [Drosophila sechellia] gi|194120665|gb|EDW42708.1| GM26156 [Drosophila sechellia]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157970|gb|AAA28722.1| tachykinin receptor [Drosophila melanogaster]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195571943|ref|XP_002103960.1| GD20709 [Drosophila simulans] gi|194199887|gb|EDX13463.1| GD20709 [Drosophila simulans]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499840|ref|XP_002097118.1| GE24673 [Drosophila yakuba] gi|194183219|gb|EDW96830.1| GE24673 [Drosophila yakuba]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24645737|ref|NP_524304.2| Tachykinin-like receptor at 86C, isoform A [Drosophila melanogaster] gi|68067613|sp|P30974.2|TLR1_DROME RecName: Full=Tachykinin-like peptides receptor 86C; Short=NKD gi|7299352|gb|AAF54544.1| Tachykinin-like receptor at 86C, isoform A [Drosophila melanogaster]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902235|ref|XP_001980652.1| GG17272 [Drosophila erecta] gi|190652355|gb|EDV49610.1| GG17272 [Drosophila erecta]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195107430|ref|XP_001998315.1| GI23895 [Drosophila mojavensis] gi|193914909|gb|EDW13776.1| GI23895 [Drosophila mojavensis]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct: 114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query: 61  LVAISLDRFV 70
           LVAIS DR++
Sbjct: 174 LVAISFDRYI 183

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
FB|FBgn0004841	504	Takr86C "Tachykinin-like recep	0.972	0.138	0.671	7.5e-23
FB|FBgn0004622	519	Takr99D "Tachykinin-like recep	0.972	0.134	0.6	3.3e-19
UNIPROTKB|F1NJ82	419	TACR3 "Uncharacterized protein	0.972	0.167	0.514	1.6e-15
ZFIN|ZDB-GENE-061207-19	395	tacr3l "tachykinin receptor 3-	0.972	0.177	0.485	8.1e-15
UNIPROTKB|J9NS65	350	TACR3 "Uncharacterized protein	0.972	0.2	0.5	8.9e-15
UNIPROTKB|F1N2X0	463	TACR3 "Uncharacterized protein	0.972	0.151	0.514	9.5e-15
UNIPROTKB|F1S112	360	TACR3 "Uncharacterized protein	0.972	0.194	0.5	9.9e-15
ZFIN|ZDB-GENE-091117-17	412	tacr1b "tachykinin receptor 1b	0.972	0.169	0.485	1.9e-14
UNIPROTKB|P29371	465	TACR3 "Neuromedin-K receptor"	0.972	0.150	0.5	2e-14
ZFIN|ZDB-GENE-090312-188	376	tacr2 "tachykinin receptor 2"	0.972	0.186	0.471	2.5e-14

FB|FBgn0004841 Takr86C "Tachykinin-like receptor at 86C" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 7.5e-23, P = 7.5e-23
 Identities = 47/70 (67%), Positives = 59/70 (84%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+L+NLS+ADL M+  NCVFNFI+ML S WPFG +YC +N F+ N+TV+ SVFT
Sbjct:   114 MRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLNSDWPFGSIYCTINNFVANVTVSTSVFT 173

Query:    61 LVAISLDRFV 70
             LVAIS DR++
Sbjct:   174 LVAISFDRYI 183

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

FB|FBgn0004622 Takr99D "Tachykinin-like receptor at 99D" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 3.3e-19, P = 3.3e-19
 Identities = 42/70 (60%), Positives = 56/70 (80%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY++VNLS+AD  ++  N  FN+ YML S WPFGE YCK++ FI  +++ ASVFT
Sbjct:   132 MRTVTNYFIVNLSIADAMVSSLNVTFNYYYMLDSDWPFGEFYCKLSQFIAMLSICASVFT 191

Query:    61 LVAISLDRFV 70
             L+AIS+DR+V
Sbjct:   192 LMAISIDRYV 201

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS;IDA

GO:0004995 "tachykinin receptor activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

UNIPROTKB|F1NJ82 TACR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FGE YC+ + F     V AS+++
Sbjct:    69 MRTVTNYFLVNLAFSDASMAAFNTLINFIYALHSEWYFGEAYCRFHNFFPITAVFASIYS 128

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:   129 MTAIAVDRYM 138

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-061207-19 tacr3l "tachykinin receptor 3-like" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 34/70 (48%), Positives = 50/70 (71%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+L+NL+ +D  MA FN + NFIY  +  W FGE+YCK + F     V AS+++
Sbjct:    56 MRTVTNYFLLNLAFSDASMAAFNTLINFIYATHGEWYFGEVYCKFHNFFPVTAVFASIYS 115

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:   116 MTAIAVDRYM 125

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA;IDA

GO:0007217 "tachykinin receptor signaling pathway" evidence=IDA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|J9NS65 TACR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 192 (72.6 bits), Expect = 8.9e-15, P = 8.9e-15
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:     1 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 60

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:    61 MTAIAVDRYM 70

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

UNIPROTKB|F1N2X0 TACR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 36/70 (51%), Positives = 49/70 (70%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   114 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 173

Query:    61 LVAISLDRFV 70
             + AIS+DR++
Sbjct:   174 MTAISVDRYM 183

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

UNIPROTKB|F1S112 TACR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 9.9e-15, P = 9.9e-15
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   115 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 174

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:   175 MTAIAVDRYM 184

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004995 "tachykinin receptor activity" evidence=IEA

ZFIN|ZDB-GENE-091117-17 tacr1b "tachykinin receptor 1b" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ A+  M+ FN V NFIY +++ W FG +YC+ + F     V AS+++
Sbjct:    70 MRTVTNYFLVNLAFAEASMSAFNTVINFIYAVHNEWYFGLVYCRFHNFFPIAAVFASIYS 129

Query:    61 LVAISLDRFV 70
             + AI+LDR++
Sbjct:   130 MTAIALDRYM 139

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P29371 TACR3 "Neuromedin-K receptor" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 35/70 (50%), Positives = 49/70 (70%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY+LVNL+ +D  MA FN + NFIY L+S W FG  YC+   F     V AS+++
Sbjct:   116 MRTVTNYFLVNLAFSDASMAAFNTLVNFIYALHSEWYFGANYCRFQNFFPITAVFASIYS 175

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:   176 MTAIAVDRYM 185

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0010460 "positive regulation of heart rate" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0042538 "hyperosmotic salinity response" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045777 "positive regulation of blood pressure" evidence=IEA

GO:0060259 "regulation of feeding behavior" evidence=IEA

GO:0070474 "positive regulation of uterine smooth muscle contraction" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007217 "tachykinin receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

ZFIN|ZDB-GENE-090312-188 tacr2 "tachykinin receptor 2" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 33/70 (47%), Positives = 50/70 (71%)

Query:     1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
             MRTVTNY++VNL+ +D  MA FN VFNF+Y L++ W FG  YCK   F     + +S+++
Sbjct:    65 MRTVTNYFIVNLAFSDASMATFNTVFNFVYALHNDWYFGLGYCKFQNFFPITAMFSSIYS 124

Query:    61 LVAISLDRFV 70
             + AI++DR++
Sbjct:   125 MAAIAVDRYM 134

GO:0004995 "tachykinin receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	72
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-16
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	0.001

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 68.9 bits (169), Expect = 5e-16
 Identities = 26/70 (37%), Positives = 43/70 (61%)

Query: 1  MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
          +RT TN +L+NL++ADL   +    +   Y++   WPFG+  CK+  F+  +   AS+  
Sbjct: 9  LRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILL 68

Query: 61 LVAISLDRFV 70
          L AIS+DR++
Sbjct: 69 LTAISIDRYL 78

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 2   RTVTNYYLVNLSLADL-FMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           +T  + YL+NL+++DL F+      F   Y +   W FGE  CK+   +  I    S+  
Sbjct: 71  KTPMDIYLLNLAVSDLLFVMTLP--FQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNF 128

Query: 61  LVAISLDRFV 70
           +  +S+DR++
Sbjct: 129 ITVMSVDRYI 138

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG4219|consensus	423		99.77
PHA03234	338	DNA packaging protein UL33; Provisional	99.74
KOG4220|consensus	503		99.58
PHA02834	323	chemokine receptor-like protein; Provisional	99.58
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.55
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.52
PHA03235	409	DNA packaging protein UL33; Provisional	99.48
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.44
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.87
KOG2087|consensus	363		98.7
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	97.91
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	97.7
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.36
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	96.59
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	95.05
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	94.25
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	90.51
PF10292	324	7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c	90.14
PF02175	236	7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept	85.85

>KOG4219|consensus

Probab=99.77  E-value=1.3e-18  Score=103.12  Aligned_cols=72  Identities=56%  Similarity=0.962  Sum_probs=69.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+.+|+|+.|||++|+.++++..|..........|.+|.+.|++..+.......+|+++++++++|||+||
T Consensus        66 MRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AI  137 (423)
T KOG4219|consen   66 MRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAI  137 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeeccccchhhhhHhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999988888999999999999999999999999999999999999986

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.74  E-value=2.2e-17  Score=97.19  Aligned_cols=70  Identities=20%  Similarity=0.387  Sum_probs=60.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++. .|+.... ..++|++|+..|++..+......++|++++++||+|||.||
T Consensus        65 ~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aI  134 (338)
T PHA03234         65 KHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTL  134 (338)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeee
Confidence            4789999999999999999764 4544433 34579999999999999999999999999999999999875

>KOG4220|consensus

Probab=99.58  E-value=3e-16  Score=93.76  Aligned_cols=72  Identities=33%  Similarity=0.669  Sum_probs=69.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      ||+..|+|+.+||++|+++|.+.+|....+.+.++|.+|...|.+.-.+.++.+-+|++.+..|++|||..|
T Consensus        61 LqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsV  132 (503)
T KOG4220|consen   61 LQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSV  132 (503)
T ss_pred             eeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceee
Confidence            689999999999999999999999999999999999999999999999999999999999999999999865

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.58  E-value=1.6e-14  Score=84.53  Aligned_cols=69  Identities=29%  Similarity=0.560  Sum_probs=58.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         2 ~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +++.|+++.|||++|++. ....|..+... .++|..|+..|++..+.......+|.+++++||+|||.+|
T Consensus        59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI  127 (323)
T PHA02834         59 MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILV  127 (323)
T ss_pred             cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            357899999999999986 55677765443 4579999999999999888888899999999999999875

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.55  E-value=2.9e-14  Score=79.20  Aligned_cols=72  Identities=35%  Similarity=0.699  Sum_probs=64.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|........++|..++..|+...+........+.++++++++|||.+|
T Consensus        15 ~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i   86 (257)
T PF00001_consen   15 LRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAI   86 (257)
T ss_dssp             G-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            368999999999999999999888887777776789999999999999999999999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.52  E-value=1.3e-13  Score=83.20  Aligned_cols=70  Identities=27%  Similarity=0.602  Sum_probs=60.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.. ...|..+... .++|..++..|++.........+++.+.++++++|||+||
T Consensus       128 lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaI  197 (417)
T PHA02638        128 IKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAI  197 (417)
T ss_pred             CCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999875 4677665543 4679999999999999999999999999999999999875

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.48  E-value=3e-13  Score=81.53  Aligned_cols=66  Identities=23%  Similarity=0.337  Sum_probs=53.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPF--GEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         3 ~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +..|+++.|||++|++. +...|..+..   ..|.+  +...|++..+....+..+|.+++++||+|||.+|
T Consensus        67 ~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI  134 (409)
T PHA03235         67 STPTLYMTNLYLANLLT-VFVLPFIMLS---NQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVI  134 (409)
T ss_pred             CccHHHHHHHHHHHHHH-HHHHHHHHHh---cCccccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            45689999999999987 4567765532   33443  4689999999999999999999999999999875

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.44  E-value=1.4e-12  Score=76.39  Aligned_cols=71  Identities=28%  Similarity=0.585  Sum_probs=61.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++ ..|........++|..++..|+...+........|.+++++|++|||.+|
T Consensus        70 ~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI  140 (335)
T PHA03087         70 IKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAI  140 (335)
T ss_pred             ccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999998766 45555555556778889999999999999999999999999999999875

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.87  E-value=1.9e-08  Score=57.72  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      ||+|+++++..++++|++......|......  +..+.....|-.+.+...++...+...+..|++||++||
T Consensus        21 Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV   90 (257)
T PF10320_consen   21 LRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAV   90 (257)
T ss_pred             cccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeE
Confidence            6999999999999999999887777766332  334566778998888888889999999999999999886

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=98.70  E-value=1.3e-07  Score=56.31  Aligned_cols=70  Identities=23%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYML-------YSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         3 ~~~~~~~~~la~~dl~~~~~~~p~~~~~~~-------~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +...+++.|||++|++.++...........       ...|......|+..+++..+.+-.|+++++.+++||++.|
T Consensus        57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i  133 (363)
T KOG2087|consen   57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSI  133 (363)
T ss_pred             cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            567899999999999999854433333221       1224445678999999999999999999999999999865

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.91  E-value=0.00023  Score=39.86  Aligned_cols=70  Identities=20%  Similarity=0.285  Sum_probs=53.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhc
Q psy17211          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVE   71 (72)
Q Consensus         2 ~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~a   71 (72)
                      |+..+-++.||.++|++.++............+.-..+...|..++++....-.++-+...+|++.-|+.
T Consensus        33 ~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~  102 (201)
T PF11710_consen   33 RSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLI  102 (201)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778999999999999876553444444444445678999999999988888888888888876643

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.70  E-value=0.00037  Score=40.95  Aligned_cols=72  Identities=17%  Similarity=0.351  Sum_probs=50.7

Q ss_pred             CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c--cccc---cchhhhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy17211          1 MRT-VTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH----W--PFGE---MYCKVNYFITNITVAASVFTLVAISLDRFV   70 (72)
Q Consensus         1 l~~-~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~----~--~~~~---~~C~~~~~~~~~~~~~s~~~l~~is~dRy~   70 (72)
                      ||+ +.|.++..+|++|+.......+..........    .  +.+.   .............-..|.|.-+.||+.|++
T Consensus        26 mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR~l  105 (318)
T PF10324_consen   26 MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIRYL  105 (318)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            465 89999999999999998877777665444321    0  1111   112334556777778999999999999998


Q ss_pred             cC
Q psy17211         71 EA   72 (72)
Q Consensus        71 ai   72 (72)
                      ++
T Consensus       106 ~i  107 (318)
T PF10324_consen  106 SI  107 (318)
T ss_pred             HH
Confidence            64

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.36  E-value=0.0044  Score=35.90  Aligned_cols=72  Identities=11%  Similarity=0.134  Sum_probs=48.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchh-hhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCK-VNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.+.+-.+.+++|.+......-........+.....+.... ..+.....+...+..+..+||+.|+.||
T Consensus        24 ~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai   96 (274)
T PF10328_consen   24 LRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAI   96 (274)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            47888999999999999988754333322222233222232233 3366666677789999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=96.59  E-value=0.035  Score=33.15  Aligned_cols=66  Identities=20%  Similarity=0.333  Sum_probs=48.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFV   70 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~   70 (72)
                      +|++.+-++.-++++|++..+.....   . .......+...|..++++..++..++.+=..+|+++=|.
T Consensus        37 ~r~~~~rli~yl~~~~ll~~v~~~~~---~-~~~~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~  102 (303)
T PF05462_consen   37 LRKPINRLIFYLSIANLLTNVASMIM---T-LSPSAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYL  102 (303)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHH---H-hcccCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhh
Confidence            47889999999999999877643221   1 223334457789999999999888888777788887664

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.05  E-value=0.14  Score=30.19  Aligned_cols=63  Identities=17%  Similarity=0.353  Sum_probs=44.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHH
Q psy17211          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISL   66 (72)
Q Consensus         3 ~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~   66 (72)
                      +|.+..+.+|++++.+..+.-..+...... +...+++.+|+...|..-+.=..|+.+...++.
T Consensus         9 kp~dlIl~hLa~aN~lvLl~rGip~~~~~~-~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSv   71 (265)
T PF03402_consen    9 KPIDLILIHLALANILVLLSRGIPQTMAFF-GWKFFDDIGCKIVFYIYRVARGLSICTTCLLSV   71 (265)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhHHHHHHHh-hcccCCCceeeeeeeehHHhchhhHHhhhHHHH
Confidence            589999999999999887753222333333 223468899998888777766677777666665

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.25  E-value=0.61  Score=27.45  Aligned_cols=71  Identities=15%  Similarity=0.369  Sum_probs=43.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc--ccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYML--YSH--WPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         2 ~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~--~~~--~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +++-+-.+.+-+++|++..+...........  ..+  ...++..-+......+.....-....+.+|+.||.||
T Consensus        30 ~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai  104 (283)
T PF10323_consen   30 KSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAI  104 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheE
Confidence            5788889999999999887754332222111  011  1122222334444555566677778889999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=90.51  E-value=2.5  Score=25.28  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHh
Q psy17211          3 TVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRF   69 (72)
Q Consensus         3 ~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy   69 (72)
                      +|.+..+.+||+++++.-..............+....+..++...+...+....|.|.-+.+++--+
T Consensus        42 ~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~s~W~tt~LsvfYc  108 (303)
T PF05296_consen   42 SPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLWMFSNSSSLWFTTWLSVFYC  108 (303)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            4888999999999998876554444444443434444556777777777777888888888887444

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=90.14  E-value=2.7  Score=25.22  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             cccchhhhHHHhHHHHHHHHHHHHHHHHHHhhc
Q psy17211         39 GEMYCKVNYFITNITVAASVFTLVAISLDRFVE   71 (72)
Q Consensus        39 ~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~a   71 (72)
                      +...|........++......+..++.+||++|
T Consensus        92 ~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iA  124 (324)
T PF10292_consen   92 STYRCFILRIPYNFGLFLVSFTTVSLVIERTIA  124 (324)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777788888999999999999976

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].

>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.85  E-value=1.7  Score=25.34  Aligned_cols=32  Identities=9%  Similarity=0.231  Sum_probs=24.8

Q ss_pred             cchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211         41 MYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus        41 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      ..++.......+.+..+......+++||++|.
T Consensus        83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl  114 (236)
T PF02175_consen   83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIAL  114 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455566777788888889999999999873

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	72
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		2e-12
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		5e-08
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		2e-07
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		4e-07
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		4e-07
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		5e-07
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		5e-07
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		5e-07
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-07
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-07
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-07
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		6e-07
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		6e-07
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		2e-06
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		2e-06
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		1e-05
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		4e-05
2x72_A	349	Crystal Structure Of The Constitutively Active E113		1e-04
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		1e-04
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		1e-04
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-04
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-04
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		2e-04
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		5e-04
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		5e-04

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122
Query: 61  LVAISLDRFV 70
           + A++ DR++
Sbjct: 123 MTAVAFDRYM 132

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  + +    F    +L   WPFG   CK    I    +  S FT
Sbjct: 156 MKTATNIYIFNLALADT-LVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFT 214
Query: 61  LVAISLDRFV 70
           L A+S+DR+V
Sbjct: 215 LTAMSVDRYV 224

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS++T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWT 131
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 132 LCVIAVDRY 140

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  +       + +Y++ S WPFG++ CK+   I    +  S+FT
Sbjct: 53  MKTATNIYIFNLALADALVTTTMPFQSTVYLMNS-WPFGDVLCKIVLSIDYYNMFTSIFT 111
Query: 61  LVAISLDRFV 70
           L  +S+DR++
Sbjct: 112 LTMMSVDRYI 121

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD  +A     F  +  L   WPFG + CK+   I    +  S+FT
Sbjct: 48  MKTATNIYIFNLALADA-LATSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106
Query: 61  LVAISLDRFV 70
           L  +S+DR++
Sbjct: 107 LCTMSVDRYI 116

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++T TN Y+ NL+LAD  +A     F     L   WPFGE+ CK    I    +  S+FT
Sbjct: 45  LKTATNIYIFNLALADA-LATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFT 103
Query: 61  LVAISLDRFV 70
           L  +S+DR++
Sbjct: 104 LTMMSVDRYI 113

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 65  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 124
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 125 LCVIAVDRY 133

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 36  LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 95
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 96  LCVIAVDRY 104

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 41  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 100
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 101 LCVIAVDRY 109

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 64  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 123
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 124 LCVIAVDRY 132

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET 272
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 273 LCVIAVDRY 281

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 72  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 131
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 132 LCVIAVDRY 140

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ T
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIET 130
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 131 LCVIAVDRY 139

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TV NY+L +L+ ADL + VF+     +Y +  +WP G + C +   +  +   ASV  
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMN 113
Query: 61  LVAISLDRF 69
           L+ IS DR+
Sbjct: 114 LLIISFDRY 122

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TVTNY++ +L+ ADL M +    F    +L   W FG  +C+    I  + V AS+ T
Sbjct: 40  LQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIET 99
Query: 61  LVAISLDRF 69
           L  I++DR+
Sbjct: 100 LCVIAVDRY 108

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++TV NY+L++L+ ADL + V +      Y++ + W  G + C +   I  +   ASV  
Sbjct: 43  LKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMN 102
Query: 61  LVAISLDRF 69
           L+ IS DR+
Sbjct: 103 LLVISFDRY 111

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           + TV N Y+V+LS+ADL +       N +Y+L S W  G   C     +  +   AS+F+
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFS 98
Query: 61  LVAISLDRF 69
           +  + +DR+
Sbjct: 99  VFILCIDRY 107

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALW 127
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 68  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 127 SLVVLAIERYV 137

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 68  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 126
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 127 SLVVLAIERYV 137

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYM-LYSHWPFGEMYCKVNYFITNITVAASVF 59
           +RT  NY L+NL++ADLFM VF      +Y  L+ ++ FG   C +  F   +    +++
Sbjct: 69  LRTPLNYILLNLAVADLFM-VFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALW 127
Query: 60  TLVAISLDRFV 70
           +LV ++++R+V
Sbjct: 128 SLVVLAIERYV 138

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LVAISLDRFV 70
           L  I++DR++
Sbjct: 102 LCVIAIDRYL 111

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ T
Sbjct: 42  LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIET 101
Query: 61  LVAISLDRFV 70
           L  I++DR++
Sbjct: 102 LCVIAIDRYL 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-26
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-22
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	7e-22
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-16
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	8e-16
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	2e-15
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	4e-15
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	6e-15
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	6e-15
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	2e-14
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	1e-13
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-13
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	5e-13
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	9e-13
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	1e-12

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 97.8 bits (244), Expect = 2e-26
 Identities = 32/70 (45%), Positives = 48/70 (68%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           MRTVTNY+LVNL+ A+  MA FN V NF Y +++ W +G  YCK + F     V AS+++
Sbjct: 63  MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYS 122

Query: 61  LVAISLDRFV 70
           + A++ DR++
Sbjct: 123 MTAVAFDRYM 132

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 86.7 bits (215), Expect = 2e-22
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 69  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 128

Query: 61  LVAISLDRFV 70
           LV ++++R+V
Sbjct: 129 LVVLAIERYV 138

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 71.2 bits (174), Expect = 1e-16
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           M+T TN Y+ NL+LAD         F  +  L   WPFG + CK+   I    +  S+FT
Sbjct: 48  MKTATNIYIFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFT 106

Query: 61  LVAISLDRFV 70
           L  +S+DR++
Sbjct: 107 LCTMSVDRYI 116

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 68.8 bits (168), Expect = 8e-16
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIY-MLYSHWPFGEMYCKVNYFITNITVAASVF 59
           ++T  N +++NL+ +D   ++ N             W FG   CKV  FI  I    S+ 
Sbjct: 65  LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIM 124

Query: 60  TLVAISLDRFV 70
           T+  IS+DR+ 
Sbjct: 125 TMAMISIDRYN 135

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 25/69 (36%), Positives = 40/69 (57%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
           +TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+    I  + V AS+ TL
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETL 273

Query: 62  VAISLDRFV 70
             I++DR+ 
Sbjct: 274 CVIAVDRYF 282

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 66.7 bits (162), Expect = 4e-15
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++ VTNY++V+L+ AD+ + V      F   + + +      C        +   +S+F+
Sbjct: 52  LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 109

Query: 61  LVAISLDRF 69
           L+AI++DR+
Sbjct: 110 LLAIAIDRY 118

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score = 66.3 bits (161), Expect = 6e-15
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITV-AASVF 59
           ++TV NY+L +L+ ADL + VF+     +Y +  +WP G + C + +   +  V  ASV 
Sbjct: 54  LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDL-WLALDYVVSNASVM 112

Query: 60  TLVAISLDRF 69
            L+ IS DR+
Sbjct: 113 NLLIISFDRY 122

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 66.3 bits (161), Expect = 6e-15
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNIT-VAASVF 59
           ++TVTNY++ +L+ ADL M +    F   ++L   W FG  +C+  +   ++  V AS+ 
Sbjct: 71  LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEF-WTSIDVLCVTASIE 129

Query: 60  TLVAISLDRF 69
           TL  I++DR+
Sbjct: 130 TLCVIAVDRY 139

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 64.7 bits (157), Expect = 2e-14
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITV-AASVF 59
           + TV N Y+V+LS+ADL +       N +Y+L S W  G   C   +   +     AS+F
Sbjct: 39  LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLF-WLSMDYVASTASIF 97

Query: 60  TLVAISLDRF 69
           ++  + +DR+
Sbjct: 98  SVFILCIDRY 107

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 62.8 bits (152), Expect = 1e-13
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           ++ VTNY++V+L+ AD+ + V      F   + + +      C        +   +S+F+
Sbjct: 62  LQNVTNYFVVSLAAADIAVGVL--AIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFS 119

Query: 61  LVAISLDRF 69
           L+AI++DR+
Sbjct: 120 LLAIAIDRY 128

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 19/69 (27%), Positives = 39/69 (56%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
           +T+TN ++ +L+ ADL + +    F    ++   W +G   C++   +  + V AS+ TL
Sbjct: 43  QTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETL 102

Query: 62  VAISLDRFV 70
             I++DR++
Sbjct: 103 CVIAIDRYL 111

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 61.0 bits (147), Expect = 5e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 2   RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTL 61
                Y++ NL+L+DL   V     N +    + +        +      + ++ASVF+L
Sbjct: 95  HRPMYYFIGNLALSDLLAGVAY-TANLLLSGATTYKLTPAQWFLREGSMFVALSASVFSL 153

Query: 62  VAISLDRFV 70
           +AI+++R++
Sbjct: 154 LAIAIERYI 162

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 60.3 bits (146), Expect = 9e-13
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNF-IYMLYSHWPFGEMYCKVNYFITNITVAASVF 59
           +R++T+ Y ++LS+ADL   +F     F      ++W FG   CK  + I  + + +SV+
Sbjct: 79  LRSMTDKYRLHLSVADL---LFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVW 135

Query: 60  TLVAISLDRFV 70
            L  ISLDR++
Sbjct: 136 ILAFISLDRYL 146

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 59.8 bits (144), Expect = 1e-12
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSH-WPFGEMYCKVNYFITNITVAASVF 59
           ++T TNY +V+L++ADL +A     +     +    W F  + C V   +  +   AS++
Sbjct: 69  LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIW 128

Query: 60  TLVAISLDRF 69
            L AIS+DR+
Sbjct: 129 NLCAISIDRY 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.7
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.69
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.68
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.68
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.68
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.67
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.67
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.66
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.66
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.65
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.65
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.64
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.61
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.6
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.6
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.59
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.58
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.58
1hll_A	32	Alpha-2A adrenergic receptor; helix-linker-helix,	98.11

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.70  E-value=3.3e-17  Score=98.88  Aligned_cols=71  Identities=21%  Similarity=0.569  Sum_probs=64.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          2 RTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY--SHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         2 ~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      |+++|+|+.|||++|++.++...|..+.....  +.|.+++..|++..++...+..+|++++++|++|||+||
T Consensus        67 ~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai  139 (510)
T 4grv_A           67 QSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAI  139 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEE
Confidence            47899999999999999999999988876653  568999999999999999999999999999999999875

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.69  E-value=8.1e-17  Score=96.82  Aligned_cols=72  Identities=35%  Similarity=0.619  Sum_probs=67.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|++..++..+...+|++++++|++|||+||
T Consensus        71 l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI  142 (500)
T 2rh1_A           71 LQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAI  142 (500)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            478999999999999999999889988888888899999999999999999999999999999999999875

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=94.08  Aligned_cols=72  Identities=31%  Similarity=0.627  Sum_probs=68.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|++..++..++...|.+++++|++|||++|
T Consensus        39 ~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI  110 (452)
T 3rze_A           39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSV  110 (452)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            578999999999999999999899999988888899999999999999999999999999999999999875

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.68  E-value=3.3e-16  Score=88.66  Aligned_cols=70  Identities=33%  Similarity=0.588  Sum_probs=61.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+|+|+++.|||++|++.++. .|....... ++|..++..|+...+....+..+|.+++++|++|||.+|
T Consensus        42 lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~isidRy~aI  111 (296)
T 2lnl_A           42 GRSVTDVYLLNLALADLLFALT-LPIWAASKV-NGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAI  111 (296)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHH-SSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHHHHHHHHh-hhHHHhhcc-CCCccchhHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            6899999999999999998764 555554443 569999999999999999999999999999999999886

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.68  E-value=1.6e-16  Score=93.98  Aligned_cols=72  Identities=33%  Similarity=0.664  Sum_probs=67.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|++..++..+...+|.+++++|++|||++|
T Consensus        54 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai  125 (467)
T 3uon_A           54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCV  125 (467)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999899998888888899999999999999999999999999999999999875

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.67  E-value=3.4e-16  Score=92.41  Aligned_cols=71  Identities=37%  Similarity=0.691  Sum_probs=65.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++. .|..+.....+.|..+...|++..++..++..+|.+++++|++|||++|
T Consensus        48 ~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI  118 (464)
T 4dkl_A           48 MKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAV  118 (464)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999998876 8888888888899999999999999999999999999999999999875

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.67  E-value=3.2e-16  Score=90.49  Aligned_cols=72  Identities=44%  Similarity=0.849  Sum_probs=66.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|........++|..++..|+...++......+|.+++++|++|||.+|
T Consensus        63 l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI  134 (364)
T 2ks9_A           63 MRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAI  134 (364)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999988888888877777889999999999999999999999999999999999875

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.66  E-value=1.9e-16  Score=94.04  Aligned_cols=72  Identities=24%  Similarity=0.399  Sum_probs=61.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++...+........+.|..+...|++..++..++..+|++++++|++|||+||
T Consensus        51 l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI  122 (484)
T 3vw7_A           51 VKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAV  122 (484)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEE
Confidence            478999999999999999976544444444444589999999999999999999999999999999999875

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.66  E-value=4e-16  Score=94.33  Aligned_cols=71  Identities=21%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++...|..+.. ....|..+...|.+..++..+...+|++++++|++|||+||
T Consensus        94 lr~~~~~~l~nLA~aDll~~~~~~p~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI  164 (520)
T 3v2y_A           94 FHRPMYYFIGNLALSDLLAGVAYTANLLLS-GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITM  164 (520)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cccceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEE
Confidence            589999999999999999999887776655 55678888999999999999999999999999999999875

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.65  E-value=5.2e-16  Score=88.93  Aligned_cols=72  Identities=29%  Similarity=0.519  Sum_probs=66.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|........+.|..++..|+...+....+..+|.+++++|++|||.+|
T Consensus        69 ~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI  140 (349)
T 1u19_A           69 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVV  140 (349)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcCeeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            578999999999999999999888888877777889999999999999999999999999999999999875

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.65  E-value=6.5e-16  Score=91.72  Aligned_cols=72  Identities=31%  Similarity=0.566  Sum_probs=65.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLY-SHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+..... +.|..+...|++..++..++..++.+++++|++|||++|
T Consensus        69 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI  141 (481)
T 3pbl_A           69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAV  141 (481)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999998888888776665 678999999999999999999999999999999999875

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.64  E-value=1.2e-16  Score=90.29  Aligned_cols=72  Identities=26%  Similarity=0.544  Sum_probs=66.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....++|..++..|+...+....+..+|.++++++++|||.+|
T Consensus        42 ~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI  113 (315)
T 4amj_A           42 LQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAI  113 (315)
T ss_dssp             GCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            478999999999999999988788888888888899999999999999999999999999999999999875

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.61  E-value=8.8e-16  Score=92.52  Aligned_cols=72  Identities=35%  Similarity=0.616  Sum_probs=67.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|++..++..++..+|.+++++|++|||++|
T Consensus       213 lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI  284 (514)
T 3sn6_R          213 LQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAI  284 (514)
T ss_dssp             GCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            478999999999999999998889988888888899999999999999999999999999999999999875

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.60  E-value=2.6e-15  Score=89.51  Aligned_cols=70  Identities=33%  Similarity=0.611  Sum_probs=62.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.+ +..|..+.... .+|..+...|++..++..+...+|++++++|++|||++|
T Consensus        79 l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai  148 (502)
T 3odu_A           79 LRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV-ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAI  148 (502)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-cCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            57899999999999999995 56777666554 479999999999999999999999999999999999875

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.59  E-value=7.1e-15  Score=87.10  Aligned_cols=72  Identities=31%  Similarity=0.515  Sum_probs=65.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFN-CVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++.. .|..+.....++|..+...|++..++..++..+|++++++|++|||++|
T Consensus        65 ~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI  137 (448)
T 2z73_A           65 LQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVI  137 (448)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999998864 7777777777889899999999999999999999999999999999886

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.58  E-value=3.7e-15  Score=88.43  Aligned_cols=70  Identities=26%  Similarity=0.458  Sum_probs=62.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++...|..+...  ..|..+...|++..++..++..+|.+++++|++|||++|
T Consensus        52 ~~~~~~~~l~~La~aDll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI  121 (488)
T 3eml_A           52 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAI  121 (488)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence            4789999999999999999988888766533  367788899999999999999999999999999999875

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.58  E-value=5.3e-15  Score=87.08  Aligned_cols=70  Identities=26%  Similarity=0.458  Sum_probs=62.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|+++|+++.|||++|++.++...|..+...  ..|..+...|++..++..++..+|.+++++|++|||++|
T Consensus        62 l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI  131 (447)
T 4eiy_A           62 LQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAI  131 (447)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH--TTCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEE
Confidence            4789999999999999999988888766533  467778899999999999999999999999999999875

>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A

Probab=98.11  E-value=8.5e-07  Score=34.89  Aligned_cols=17  Identities=47%  Similarity=0.669  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHhhcC
Q psy17211         56 ASVFTLVAISLDRFVEA   72 (72)
Q Consensus        56 ~s~~~l~~is~dRy~ai   72 (72)
                      +|++++++|++|||.+|
T Consensus         2 ~Si~~L~~is~dRy~aI   18 (32)
T 1hll_A            2 SSIVHLCAISLDRYWSI   18 (32)
T ss_dssp             HHHHHHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            68899999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	7e-04

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.8 bits (76), Expect = 7e-04
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query: 1   MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFT 60
           +RT  NY L+NL++ADLFM            L+ ++ FG   C +  F   +    ++++
Sbjct: 68  LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWS 127

Query: 61  LVAISLDRFV 70
           LV ++++R+V
Sbjct: 128 LVVLAIERYV 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.51

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=4.1e-14  Score=79.85  Aligned_cols=72  Identities=29%  Similarity=0.519  Sum_probs=66.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhHHHhHHHHHHHHHHHHHHHHHHhhcC
Q psy17211          1 MRTVTNYYLVNLSLADLFMAVFNCVFNFIYMLYSHWPFGEMYCKVNYFITNITVAASVFTLVAISLDRFVEA   72 (72)
Q Consensus         1 l~~~~~~~~~~la~~dl~~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai   72 (72)
                      +|++.|+++.|||++|++.++...|..+.....+.|..+...|+...+....+..++.++++++++|||.+|
T Consensus        68 lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i  139 (348)
T d1u19a_          68 LRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVV  139 (348)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhcccceee
Confidence            589999999999999999998888888888888888888999999999999999999999999999999864