Psyllid ID: psy1721

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFDRGNCNC
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
MRILSKAFFRLkttlpwvpkdtklskldtLRLATSYILHLKMLLsqqqddpshthkeQWTQVLNVRFDRGNCNC
Flexible Loop (DISEMBL)
mrilskaffrlkttlpwvpkdtklskldTLRLATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFDRGNCNC
Low Complexity Region (SEG)
MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFDRGNCNC
Disordered region (IsUnstruct)
***LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLL**************WTQVLNVRF*******
Disordered Region (DISOPRED)
*RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLK*********************************
Disordered Region (DISEMBL)
MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS***********EQWTQVLNVRFDRGNCNC
Disordered Region (DISPRO)
*RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWTQVLNVRFDRGNCNC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
O88940	201	Musculin OS=Mus musculus	yes	N/A	0.918	0.338	0.6	5e-16
O60682	206	Musculin OS=Homo sapiens	yes	N/A	0.918	0.330	0.585	1e-15
O35437	179	Transcription factor 21 O	no	N/A	0.743	0.307	0.672	2e-15
Q32PV5	176	Transcription factor 21 O	yes	N/A	0.743	0.312	0.672	2e-15
O43680	179	Transcription factor 21 O	no	N/A	0.743	0.307	0.672	2e-15
Q5E9S3	179	Transcription factor 21 O	no	N/A	0.743	0.307	0.672	3e-15
A8E5T6	179	Transcription factor 21 O	yes	N/A	0.743	0.307	0.672	3e-15
Q6GNB7	179	Transcription factor 21 O	N/A	N/A	0.743	0.307	0.672	3e-15
Q2T9Q7	214	Transcription factor 23 O	no	N/A	0.702	0.242	0.596	2e-09
Q9JLR5	209	Transcription factor 23 O	no	N/A	0.702	0.248	0.519	3e-07

>sp|O88940|MUSC_MOUSE Musculin OS=Mus musculus GN=Msc PE=1 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct: 115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLT 174

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 175 WPFVVSGRPD 184

Transcription repressor that blocks myogenesis and activation of E-box dependent muscle genes.
Mus musculus (taxid: 10090)

>sp|O60682|MUSC_HUMAN Musculin OS=Homo sapiens GN=MSC PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 120 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 179

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 180 WPFVVSGRPD 189

Transcription repressor capable of inhibiting the transactivation capability of TCF3/E47. May play a role in regulating antigen-dependent B-cell differentiation.

Homo sapiens (taxid: 9606)

>sp|O35437|TCF21_MOUSE Transcription factor 21 OS=Mus musculus GN=Tcf21 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 92  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis. May be involved in the organogenesis of the spleen and heart and in cardiac and coronary artery development. May function in the development and sex differentiation of gonad via transcriptional regulation of AD4BP/SF-1.

Mus musculus (taxid: 10090)

>sp|Q32PV5|TCF21_DANRE Transcription factor 21 OS=Danio rerio GN=tcf21 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 89  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 143

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis.

Danio rerio (taxid: 7955)

>sp|O43680|TCF21_HUMAN Transcription factor 21 OS=Homo sapiens GN=TCF21 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 92  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis. May play a role in the specification or differentiation of one or more subsets of epicardial cell types.

Homo sapiens (taxid: 9606)

>sp|Q5E9S3|TCF21_BOVIN Transcription factor 21 OS=Bos taurus GN=TCF21 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 92  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis. May play a role in the specification or differentiation of one or more subsets of epicardial cell types.

Bos taurus (taxid: 9913)

>sp|A8E5T6|TCF21_XENTR Transcription factor 21 OS=Xenopus tropicalis GN=tcf21 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 92  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GNB7|TCF21_XENLA Transcription factor 21 OS=Xenopus laevis GN=tcf21 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct: 92  MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

Involved in epithelial-mesenchymal interactions in kidney and lung morphogenesis that include epithelial differentiation and branching morphogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q2T9Q7|TCF23_BOVIN Transcription factor 23 OS=Bos taurus GN=TCF23 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 35/52 (67%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPS 52
           +R L +AF  L+ TLP VP DTKLSKLD L LATSYI HL   L Q+   PS
Sbjct: 89  VRTLRQAFLALQATLPAVPPDTKLSKLDVLVLATSYIAHLTRTLGQEMPGPS 140

Inhibits E-box-mediated binding and transactivation of bHLH factors. Inhibitory effect is similar to that of ID proteins. Inhibits the formation of TCF3 and MYOD1 homo- and heterodimers. Lacks DNA binding activity. Seems to play a role in the inhibition of myogenesis.

Bos taurus (taxid: 9913)

>sp|Q9JLR5|TCF23_MOUSE Transcription factor 23 OS=Mus musculus GN=Tcf23 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 33/52 (63%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPS 52
           ++ L +AF  L+  LP VP DTKLSKLD L LATSYI HL   L  +   P+
Sbjct: 88  VKTLRQAFLALQAALPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHELPGPA 139

Inhibits E-box-mediated binding and transactivation of bHLH factors. Inhibitory effect is similar to that of ID proteins. Inhibits the formation of TCF3 and MYOD1 homo- and heterodimers. Lacks DNA binding activity. May be involved in the regulation or modulation of smooth muscle contraction of the uterus during pregnancy and particularly around the time of delivery. Seems to play a role in the inhibition of myogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
91094245	137	PREDICTED: similar to Transcription fact	0.986	0.532	0.630	3e-16
6754740	201	musculin [Mus musculus] gi|15214096|sp|O	0.918	0.338	0.6	2e-14
300795760	203	musculin [Rattus norvegicus]	0.918	0.334	0.6	3e-14
74218486	216	unnamed protein product [Mus musculus]	0.891	0.305	0.606	3e-14
363730834	201	PREDICTED: musculin [Gallus gallus]	0.918	0.338	0.585	3e-14
410328935	296	musculin [Pan troglodytes]	0.918	0.229	0.585	4e-14
116805332	206	musculin [Homo sapiens] gi|397522660|ref	0.918	0.330	0.585	5e-14
387541144	206	musculin [Macaca mulatta]	0.918	0.330	0.585	5e-14
30585413	207	Homo sapiens musculin (activated B-cell	0.918	0.328	0.585	5e-14
300798564	197	musculin [Bos taurus] gi|296480567|tpg|D	0.918	0.345	0.585	5e-14

>gi|91094245|ref|XP_968572.1| PREDICTED: similar to Transcription factor 21 (Podocyte-expressed 1) (Pod-1) (Epicardin) (Capsulin) [Tribolium castaneum] gi|270016269|gb|EFA12715.1| hypothetical protein TcasGA2_TC002349 [Tribolium castaneum]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 49/73 (67%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWT 60
           MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLATSYI HL+ +L  Q   P H HK   T
Sbjct: 35  MRVLSKAFCRLKTTLPWVPADTKLSKLDTLRLATSYIAHLRAVLMDQPVSPDHVHKHPLT 94

Query: 61  QVLNVRFDRGNCN 73
                 F R   N
Sbjct: 95  LTWPYSFQRSETN 107

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6754740|ref|NP_034957.1| musculin [Mus musculus] gi|15214096|sp|O88940.1|MUSC_MOUSE RecName: Full=Musculin; AltName: Full=Myogenic repressor gi|3599519|gb|AAC69869.1| musculin [Mus musculus] gi|4193821|gb|AAD10053.1| muscle-specific basic helix-loop-helix transcription factor MyoR [Mus musculus] gi|73695283|gb|AAI03593.1| Musculin [Mus musculus] gi|73695285|gb|AAI03595.1| Musculin [Mus musculus] gi|73695372|gb|AAI03594.1| Musculin [Mus musculus] gi|73695386|gb|AAI03624.1| Musculin [Mus musculus] gi|148682381|gb|EDL14328.1| musculin [Mus musculus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct: 115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLT 174

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 175 WPFVVSGRPD 184

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|300795760|ref|NP_001178683.1| musculin [Rattus norvegicus]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct: 117 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLT 176

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 177 WPFVVSGRPD 186

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74218486|dbj|BAE23816.1| unnamed protein product [Mus musculus]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 49/66 (74%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQWT 60
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct: 115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLV 174

Query: 61  QVLNVR 66
            +L  R
Sbjct: 175 GMLRSR 180

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363730834|ref|XP_418293.3| PREDICTED: musculin [Gallus gallus]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 174

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 175 WPFVVSGRPD 184

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410328935|gb|JAA33414.1| musculin [Pan troglodytes]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 210 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 269

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 270 WPFVVSGRPD 279

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116805332|ref|NP_005089.2| musculin [Homo sapiens] gi|397522660|ref|XP_003831377.1| PREDICTED: musculin [Pan paniscus] gi|426359891|ref|XP_004047190.1| PREDICTED: musculin [Gorilla gorilla gorilla] gi|15214091|sp|O60682.2|MUSC_HUMAN RecName: Full=Musculin; AltName: Full=Activated B-cell factor 1; Short=ABF-1; AltName: Full=Class A basic helix-loop-helix protein 22; Short=bHLHa22 gi|13623427|gb|AAH06313.1| Musculin (activated B-cell factor-1) [Homo sapiens] gi|30583177|gb|AAP35833.1| musculin (activated B-cell factor-1) [Homo sapiens] gi|45710014|gb|AAH67827.1| Musculin (activated B-cell factor-1) [Homo sapiens] gi|60656231|gb|AAX32679.1| musculin [synthetic construct] gi|60656233|gb|AAX32680.1| musculin [synthetic construct] gi|119607390|gb|EAW86984.1| musculin (activated B-cell factor-1) [Homo sapiens] gi|208966798|dbj|BAG73413.1| musculin [synthetic construct] gi|325464329|gb|ADZ15935.1| musculin (activated B-cell factor-1) [synthetic construct] gi|410211998|gb|JAA03218.1| musculin [Pan troglodytes] gi|410257822|gb|JAA16878.1| musculin [Pan troglodytes] gi|410296544|gb|JAA26872.1| musculin [Pan troglodytes]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 120 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 179

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 180 WPFVVSGRPD 189

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387541144|gb|AFJ71199.1| musculin [Macaca mulatta]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 120 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 179

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 180 WPFVVSGRPD 189

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|30585413|gb|AAP36979.1| Homo sapiens musculin (activated B-cell factor-1) [synthetic construct] gi|60653177|gb|AAX29283.1| musculin [synthetic construct] gi|60653179|gb|AAX29284.1| musculin [synthetic construct]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 120 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 179

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 180 WPFVVSGRPD 189

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|300798564|ref|NP_001179075.1| musculin [Bos taurus] gi|296480567|tpg|DAA22682.1| TPA: musculin-like [Bos taurus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 1   MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
           MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct: 111 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 170

Query: 59  WTQVLNVRFD 68
           W  V++ R D
Sbjct: 171 WPFVVSGRPD 180

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
MGI|MGI:1333884	201	Msc "musculin" [Mus musculus (	0.918	0.338	0.6	2.9e-16
RGD|1305496	203	Msc "musculin" [Rattus norvegi	0.918	0.334	0.6	2.9e-16
UNIPROTKB|E1BUA4	201	MSC "Uncharacterized protein"	0.918	0.338	0.585	9.8e-16
UNIPROTKB|G3X7V5	197	MSC "Uncharacterized protein"	0.918	0.345	0.585	9.8e-16
UNIPROTKB|E2R7N0	198	MSC "Uncharacterized protein"	0.918	0.343	0.585	9.8e-16
UNIPROTKB|O60682	206	MSC "Musculin" [Homo sapiens (	0.918	0.330	0.585	9.8e-16
UNIPROTKB|F1RWI0	201	MSC "Uncharacterized protein"	0.918	0.338	0.585	9.8e-16
UNIPROTKB|E1BUB8	179	TCF21 "Uncharacterized protein	0.743	0.307	0.672	2e-15
UNIPROTKB|Q5E9S3	179	TCF21 "Transcription factor 21	0.743	0.307	0.672	2e-15
UNIPROTKB|E2R3U1	261	TCF21 "Uncharacterized protein	0.743	0.210	0.672	2e-15

MGI|MGI:1333884 Msc "musculin" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/70 (60%), Positives = 52/70 (74%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct:   115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLT 174

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   175 WPFVVSGRPD 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IGI

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0060021 "palate development" evidence=IGI

GO:0060539 "diaphragm development" evidence=IGI

RGD|1305496 Msc "musculin" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/70 (60%), Positives = 52/70 (74%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + + S+ H     
Sbjct:   117 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYVHPVNLT 176

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   177 WPFVVSGRPD 186

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA;ISO

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0060021 "palate development" evidence=IEA;ISO

GO:0060539 "diaphragm development" evidence=IEA;ISO

UNIPROTKB|E1BUA4 MSC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct:   115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 174

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   175 WPFVVSGRPD 184

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060539 "diaphragm development" evidence=IEA

UNIPROTKB|G3X7V5 MSC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct:   111 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 170

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   171 WPFVVSGRPD 180

GO:0060539 "diaphragm development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E2R7N0 MSC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct:   112 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 171

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   172 WPFVVSGRPD 181

GO:0060539 "diaphragm development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|O60682 MSC "Musculin" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct:   120 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 179

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   180 WPFVVSGRPD 189

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060539 "diaphragm development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

UNIPROTKB|F1RWI0 MSC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 41/70 (58%), Positives = 51/70 (72%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ-- 58
             MR+LSKAF RLKT+LPWVP DTKLSKLDTLRLA+SYI HL+ LL + + +  + H     
Sbjct:   115 MRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYENGYVHPVNLT 174

Query:    59 WTQVLNVRFD 68
             W  V++ R D
Sbjct:   175 WPFVVSGRPD 184

GO:0060539 "diaphragm development" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0014707 "branchiomeric skeletal muscle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|E1BUB8 TCF21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
             MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct:    92 MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0050681 "androgen receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0014707 "branchiomeric skeletal muscle development" evidence=ISS

GO:0048536 "spleen development" evidence=ISS

GO:0060021 "palate development" evidence=ISS

GO:0060539 "diaphragm development" evidence=ISS

GO:0072162 "metanephric mesenchymal cell differentiation" evidence=ISS

GO:0072277 "metanephric glomerular capillary formation" evidence=ISS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:0060766 "negative regulation of androgen receptor signaling pathway" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0001657 "ureteric bud development" evidence=ISS

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=ISS

GO:0060008 "Sertoli cell differentiation" evidence=ISS

GO:0001763 "morphogenesis of a branching structure" evidence=ISS

GO:0001944 "vasculature development" evidence=ISS

GO:0007530 "sex determination" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0032835 "glomerulus development" evidence=ISS

GO:0048608 "reproductive structure development" evidence=ISS

GO:0060425 "lung morphogenesis" evidence=ISS

GO:0060426 "lung vasculature development" evidence=ISS

GO:0060435 "bronchiole development" evidence=ISS

GO:0060541 "respiratory system development" evidence=ISS

GO:0048557 "embryonic digestive tract morphogenesis" evidence=ISS

GO:0048732 "gland development" evidence=ISS

GO:0048286 "lung alveolus development" evidence=ISS

UNIPROTKB|Q5E9S3 TCF21 "Transcription factor 21" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
             MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct:    92 MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 146

GO:0048732 "gland development" evidence=ISS

GO:0060426 "lung vasculature development" evidence=ISS

GO:0048608 "reproductive structure development" evidence=ISS

GO:0001944 "vasculature development" evidence=ISS

GO:0048557 "embryonic digestive tract morphogenesis" evidence=ISS

GO:0060008 "Sertoli cell differentiation" evidence=ISS

GO:0060541 "respiratory system development" evidence=ISS

GO:0060435 "bronchiole development" evidence=ISS

GO:0060425 "lung morphogenesis" evidence=ISS

GO:0048286 "lung alveolus development" evidence=ISS

GO:0032835 "glomerulus development" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0007530 "sex determination" evidence=ISS

GO:0001763 "morphogenesis of a branching structure" evidence=ISS

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=ISS

GO:0001657 "ureteric bud development" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060766 "negative regulation of androgen receptor signaling pathway" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISS

GO:0072277 "metanephric glomerular capillary formation" evidence=ISS

GO:0072162 "metanephric mesenchymal cell differentiation" evidence=ISS

GO:0060539 "diaphragm development" evidence=ISS

GO:0060021 "palate development" evidence=ISS

GO:0048536 "spleen development" evidence=ISS

GO:0014707 "branchiomeric skeletal muscle development" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0050681 "androgen receptor binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|E2R3U1 TCF21 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 37/55 (67%), Positives = 45/55 (81%)

Query:     1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH 55
             MR+LSKAF RLKTTLPWVP DTKLSKLDTLRLA+SYI HL+ +L+  + +  + H
Sbjct:   175 MRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQILANDKYENGYIH 229

GO:0048732 "gland development" evidence=ISS

GO:0060426 "lung vasculature development" evidence=ISS

GO:0048608 "reproductive structure development" evidence=ISS

GO:0001944 "vasculature development" evidence=ISS

GO:0048557 "embryonic digestive tract morphogenesis" evidence=ISS

GO:0060541 "respiratory system development" evidence=ISS

GO:0060435 "bronchiole development" evidence=ISS

GO:0060425 "lung morphogenesis" evidence=ISS

GO:0048286 "lung alveolus development" evidence=ISS

GO:0032835 "glomerulus development" evidence=ISS

GO:0030855 "epithelial cell differentiation" evidence=ISS

GO:0007530 "sex determination" evidence=ISS

GO:0060008 "Sertoli cell differentiation" evidence=ISS

GO:0001763 "morphogenesis of a branching structure" evidence=ISS

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=ISS

GO:0001657 "ureteric bud development" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0060766 "negative regulation of androgen receptor signaling pathway" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISS

GO:0072277 "metanephric glomerular capillary formation" evidence=ISS

GO:0072162 "metanephric mesenchymal cell differentiation" evidence=ISS

GO:0060539 "diaphragm development" evidence=ISS

GO:0060021 "palate development" evidence=ISS

GO:0048536 "spleen development" evidence=ISS

GO:0014707 "branchiomeric skeletal muscle development" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O60682	MUSC_HUMAN	No assigned EC number	0.5857	0.9189	0.3300	yes	N/A
O88940	MUSC_MOUSE	No assigned EC number	0.6	0.9189	0.3383	yes	N/A
A8E5T6	TCF21_XENTR	No assigned EC number	0.6727	0.7432	0.3072	yes	N/A
Q32PV5	TCF21_DANRE	No assigned EC number	0.6727	0.7432	0.3125	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
smart00353	53	smart00353, HLH, helix loop helix domain	4e-10
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	1e-08
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	8e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 49.5 bits (119), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLK 41
           R +++AF  L++ LP +PK+ KLSK + LRLA  YI  L+
Sbjct: 8  RRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQ 48

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 46.1 bits (110), Expect = 1e-08
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS 45
             ++ AF  L++ LP +P   KLSK + LR A  YI  L+ LL 
Sbjct: 16 RERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 43.6 bits (104), Expect = 8e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 4  LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLK 41
          ++ AF  L+  LP  P + KLSK + LRLA  YI HL+
Sbjct: 16 INDAFEELRELLPT-PPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG4029|consensus	228		99.65
KOG3960|consensus	284		99.5
KOG3898|consensus	254		99.45
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.16
smart00353	53	HLH helix loop helix domain.	99.15
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.14
KOG4395|consensus	285		99.11
KOG4447|consensus	173		99.09
KOG0561|consensus	373		98.24
KOG1319|consensus	229		97.49
KOG4447|consensus	173		95.94
KOG4304|consensus	250		95.07
KOG3910|consensus	632		94.75
KOG2483|consensus	232		94.59
PLN03217	93	transcription factor ATBS1; Provisional	93.95
KOG2588|consensus	953		93.94
KOG1318|consensus	411		91.43
KOG3558|consensus	768		88.36
KOG3561|consensus	803		82.12

>KOG4029|consensus

Probab=99.65  E-value=8.9e-17  Score=114.13  Aligned_cols=51  Identities=45%  Similarity=0.596  Sum_probs=48.2

Q ss_pred             CcHHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721           1 MRILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHLKMLLSQQQDDP   51 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~   51 (74)
                      |+.||.||+.||.+||..|. ++|||||||||+|+.||.+|+++|+.+....
T Consensus       121 v~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  121 VQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             ccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            67899999999999999998 9999999999999999999999999988654

>KOG3960|consensus

Probab=99.50  E-value=3.2e-14  Score=105.23  Aligned_cols=49  Identities=31%  Similarity=0.424  Sum_probs=44.3

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP   51 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~   51 (74)
                      ++||+|||.|++..-.. +++||+||||||.||.||+.||++|++..+..
T Consensus       131 kKVNEAFE~LKRrT~~N-PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~  179 (284)
T KOG3960|consen  131 KKVNEAFETLKRRTSSN-PNQRLPKVEILRSAIRYIERLQALLQEQDQAE  179 (284)
T ss_pred             HHHHHHHHHHHhhcCCC-ccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            68999999999999766 47899999999999999999999999877654

>KOG3898|consensus

Probab=99.45  E-value=4.2e-14  Score=103.12  Aligned_cols=51  Identities=35%  Similarity=0.414  Sum_probs=48.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP   51 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~   51 (74)
                      ||+||+|||.||++||+++.++|||||||||+|.+||..|+.++.......
T Consensus        84 MH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~  134 (254)
T KOG3898|consen   84 MHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL  134 (254)
T ss_pred             ccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence            899999999999999999999999999999999999999999998877764

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.16  E-value=7e-11  Score=67.37  Aligned_cols=40  Identities=33%  Similarity=0.423  Sum_probs=36.4

Q ss_pred             cHHHHHHHHHHhcCCCC--CCCCCccHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWV--PKDTKLSKLDTLRLATSYILHLK   41 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~--~~~kkLSKietLr~Ai~YI~~L~   41 (74)
                      ..||++|+.|+..||..  +...|+||.+||+.|++||.+||
T Consensus        14 ~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen   14 DRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            46999999999999984  36789999999999999999986

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>smart00353 HLH helix loop helix domain

Probab=99.15  E-value=1.4e-10  Score=65.04  Aligned_cols=44  Identities=43%  Similarity=0.628  Sum_probs=40.1

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      ..+|++|+.|+..||..+.+.+++|..||..|++||..|+..++
T Consensus         9 ~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        9 RKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            47899999999999987668999999999999999999998765

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.14  E-value=1.6e-10  Score=65.75  Aligned_cols=43  Identities=42%  Similarity=0.589  Sum_probs=39.7

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLL   44 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L   44 (74)
                      ..+|.+|+.|+..||..+.+++++|+.+|..|++||..|+..+
T Consensus        17 ~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083          17 ERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999777899999999999999999999865

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>KOG4395|consensus

Probab=99.11  E-value=9.2e-11  Score=87.06  Aligned_cols=49  Identities=43%  Similarity=0.527  Sum_probs=45.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCC
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQD   49 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~   49 (74)
                      |+.||.|||.||.++|....++||||.|||+.|..||..|..+|+.+..
T Consensus       186 m~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~~  234 (285)
T KOG4395|consen  186 MNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPMS  234 (285)
T ss_pred             hhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCccc
Confidence            7899999999999999998999999999999999999999999975544

>KOG4447|consensus

Probab=99.09  E-value=3.6e-11  Score=83.94  Aligned_cols=45  Identities=42%  Similarity=0.649  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQ   47 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~   47 (74)
                      ++||+||..||..+|+.|.+ |||||.||++|..||.+|.++|..+
T Consensus        91 qsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~  135 (173)
T KOG4447|consen   91 QSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD  135 (173)
T ss_pred             hhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccc
Confidence            57999999999999999876 9999999999999999999999887

>KOG0561|consensus

Probab=98.24  E-value=1.2e-06  Score=67.06  Aligned_cols=41  Identities=32%  Similarity=0.460  Sum_probs=37.7

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM   42 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~   42 (74)
                      ||.||.+|..||.+||.. .+.||||..||+....||-.|..
T Consensus        72 MQSINAGFqsLr~LlPr~-eGEKLSKAAILQQTa~yI~~Le~  112 (373)
T KOG0561|consen   72 MQSINAGFQSLRALLPRK-EGEKLSKAAILQQTADYIHQLEG  112 (373)
T ss_pred             HHhhhHHHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHHh
Confidence            899999999999999986 46699999999999999998864

>KOG1319|consensus

Probab=97.49  E-value=9.7e-05  Score=53.58  Aligned_cols=44  Identities=25%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhcCCCC-C---CCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           3 ILSKAFFRLKTTLPWV-P---KDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~-~---~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      .||.+++.|+.+||.- +   ...||||.-||+.||.||.+|..-...
T Consensus        76 AIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k  123 (229)
T KOG1319|consen   76 AIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK  123 (229)
T ss_pred             HHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999962 2   457999999999999999999764443

>KOG4447|consensus

Probab=95.94  E-value=0.0023  Score=45.10  Aligned_cols=41  Identities=37%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKML   43 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~   43 (74)
                      +.+|+||+.|+..+|..|.+ +.+|+.||+.+..||..+.++
T Consensus        35 ~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~   75 (173)
T KOG4447|consen   35 RRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDEL   75 (173)
T ss_pred             hhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHH
Confidence            46899999999999998765 789999999999999998874

>KOG4304|consensus

Probab=95.07  E-value=0.013  Score=43.09  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhcCCCCC-----CCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           3 ILSKAFFRLKTTLPWVP-----KDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~-----~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      -||+.++.||.+||..-     .-.||-|.|||.++.+|.+.|+..=.
T Consensus        46 RIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   46 RINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            48999999999999532     22789999999999999999987433

>KOG3910|consensus

Probab=94.75  E-value=0.036  Score=45.20  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=40.2

Q ss_pred             CcHHHHHHHHHHhcCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721           1 MRILSKAFFRLKTTLPW-VPKDTKLSKLDTLRLATSYILHLKMLLSQQQ   48 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~-~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~   48 (74)
                      +++||+||.+|-+..-. .-.+|.=+|+-||..|..-|..|.+-+++-.
T Consensus       538 VRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN  586 (632)
T KOG3910|consen  538 VRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN  586 (632)
T ss_pred             hhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence            58999999999775532 3468889999999999999999999887654

>KOG2483|consensus

Probab=94.59  E-value=0.081  Score=38.78  Aligned_cols=46  Identities=28%  Similarity=0.313  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721           3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQ   48 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~   48 (74)
                      .|-+.|+.||..||..+.+++=.-+.+|+.|..||..|+.......
T Consensus        73 hlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~  118 (232)
T KOG2483|consen   73 HLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ  118 (232)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence            3567899999999998766555589999999999999987655443

>PLN03217 transcription factor ATBS1; Provisional

Probab=93.95  E-value=0.14  Score=33.00  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhcCCCCC---CCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           3 ILSKAFFRLKTTLPWVP---KDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~---~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      +||+-..+|+..||...   ...|.|--..|+.+.+||..|..-+++
T Consensus        21 qi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDd   67 (93)
T PLN03217         21 QINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDD   67 (93)
T ss_pred             HHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999743   235778889999999999988765543

>KOG2588|consensus

Probab=93.94  E-value=0.04  Score=47.23  Aligned_cols=47  Identities=26%  Similarity=0.318  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy1721           3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDP   51 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~   51 (74)
                      +||+-...||+.+|..  +-|+.|-++||.||+||++|+......+.+.
T Consensus       290 SINDKI~eLk~lV~g~--~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~  336 (953)
T KOG2588|consen  290 SINDKIIELKDLVPGT--EAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN  336 (953)
T ss_pred             chhHHHHHHHHhcCcc--HhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence            6899999999999975  4699999999999999999998766655543

>KOG1318|consensus

Probab=91.43  E-value=0.38  Score=38.05  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721           3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKMLLSQQ   47 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~L~~~   47 (74)
                      .||+..-.|...||.. ..+-|+.|=-||..+..||..|++.++..
T Consensus       247 nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~  292 (411)
T KOG1318|consen  247 NINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA  292 (411)
T ss_pred             HHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            6999999999999974 35778999999999999999999988743

>KOG3558|consensus

Probab=88.36  E-value=0.65  Score=39.21  Aligned_cols=43  Identities=28%  Similarity=0.576  Sum_probs=33.7

Q ss_pred             HHHHHHHHhcCCCCCC--CCCccHHHHHHHHHHHHHHHHHHHhccCC
Q psy1721           5 SKAFFRLKTTLPWVPK--DTKLSKLDTLRLATSYILHLKMLLSQQQD   49 (74)
Q Consensus         5 N~Af~~LR~~lP~~~~--~kkLSKietLr~Ai~YI~~L~~~L~~~~~   49 (74)
                      |+-|..|...|| .|.  ...|-|+.++|+||.|.+ |.+++.....
T Consensus        62 n~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~~  106 (768)
T KOG3558|consen   62 NEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGDP  106 (768)
T ss_pred             hHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCCc
Confidence            788999999999 453  578999999999999875 4555554433

>KOG3561|consensus

Probab=82.12  E-value=2.6  Score=35.92  Aligned_cols=41  Identities=24%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHHHH
Q psy1721           3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLKML   43 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~~~   43 (74)
                      ++|.-.++|-..||... -.+|+=|..+||.|+..|+.+...
T Consensus        34 q~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   34 QMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             HHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            68999999999999843 479999999999999999888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	9e-16
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	2e-11
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	3e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	2e-04
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	3e-04

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60

 Score = 63.4 bits (155), Expect = 9e-16
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLL 44
          M  L+ A   L+  +P   K  KLSK++TLRLA +YI  L  +L
Sbjct: 14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68

 Score = 52.8 bits (127), Expect = 2e-11
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46
          +  +++AF  LK +    P + +L K++ LR A  YI  L+ LL  
Sbjct: 24 LSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 44.9 bits (106), Expect = 3e-08
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 1  MRILSKAFFRLK-TTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
           R +++AF  L       +  D   +KL  L+ A   IL L+  + ++  +P + H   
Sbjct: 17 RRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPLNHHHHH 75

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 35.0 bits (81), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 8  FFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLK 41
          FF L+  +P +  + K  K+  L+ AT+YIL ++
Sbjct: 25 FFALRDQIPELENNEKAPKVVILKKATAYILSVQ 58

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 68

 Score = 34.3 bits (78), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 27/40 (67%)

Query: 4  LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKML 43
          ++  + RL+  +P VP+ T+LS+++ L+    YIL L+++
Sbjct: 29 MNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQVV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	99.87
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.84
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	99.83
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.79
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.47
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.31
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.27
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.26
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.2
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.94
1a0a_A	63	BHLH, protein (phosphate system positive regulator	98.91
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	98.91
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.75
4ati_A	118	MITF, microphthalmia-associated transcription fact	98.66
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	98.62
4f3l_A	361	Mclock, circadian locomoter output cycles protein	97.91
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.89
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	97.36
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	96.23
3mlp_A	402	Transcription factor COE1; transcription factor, p	89.05

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=129.99  Aligned_cols=55  Identities=24%  Similarity=0.469  Sum_probs=50.5

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH   55 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~~~~~   55 (74)
                      |+.||+||+.||++||+.|+++|||||||||+||+||.+|+++|++.+.....+.
T Consensus        37 m~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~~   91 (97)
T 4aya_A           37 LYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLVQ   91 (97)
T ss_dssp             HHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC--
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchhh
Confidence            6889999999999999999999999999999999999999999999988876664

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.84  E-value=1.3e-21  Score=115.51  Aligned_cols=47  Identities=40%  Similarity=0.552  Sum_probs=44.3

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhcc
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQ   47 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~~   47 (74)
                      |+.||+||+.||.+||..|.++|||||+||+.|++||.+|+++|+++
T Consensus        14 ~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~g   60 (60)
T 2ql2_B           14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSG   60 (60)
T ss_dssp             HHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999764

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.83  E-value=5e-21  Score=116.23  Aligned_cols=42  Identities=31%  Similarity=0.613  Sum_probs=40.6

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHH
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKM   42 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~   42 (74)
                      |+.||+||+.||++||+.|+++|||||||||+||+||.+||.
T Consensus        26 m~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             SSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            789999999999999999999999999999999999999985

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.79  E-value=5.4e-20  Score=111.01  Aligned_cols=45  Identities=33%  Similarity=0.476  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           1 MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         1 m~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      |+.||+||+.||.+||..| ++|||||+||+.|++||.+|+++|++
T Consensus        24 ~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~~   68 (68)
T 1mdy_A           24 LSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            5789999999999999865 78999999999999999999999874

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.47  E-value=2.2e-14  Score=87.83  Aligned_cols=54  Identities=26%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             cHHHHHHHHHHhcCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q psy1721           2 RILSKAFFRLKTTLPW-VPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTH   55 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~-~~~~kkLSKietLr~Ai~YI~~L~~~L~~~~~~~~~~~   55 (74)
                      ..||++|+.||..||. .+.++++||++||+.|++||..|++.+++....+-..|
T Consensus        18 ~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~~~~   72 (76)
T 3u5v_A           18 RDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPLNHH   72 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTC--
T ss_pred             HHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            5799999999999994 66777789999999999999999999998877764443

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.31  E-value=1.4e-12  Score=79.39  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||.+|+.||.+||..+ +.|+||++||+.|++||.+|+..++.
T Consensus        25 ~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~   68 (80)
T 1hlo_A           25 DHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT   68 (80)
T ss_dssp             HHHHHHHHHHHHHSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCCC-CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999875 45899999999999999999987654

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.27  E-value=4.7e-12  Score=78.89  Aligned_cols=44  Identities=30%  Similarity=0.480  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      ..||++|+.||..||..+.+.|+||+.||+.|+.||..|+....
T Consensus        19 ~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~   62 (88)
T 1nkp_A           19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999998888999999999999999999997643

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.26  E-value=4.8e-12  Score=77.24  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.||..||..+ +.|+||++||+.|++||.+|+...+.
T Consensus        15 ~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~   58 (83)
T 1nkp_B           15 DHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999865 56899999999999999999975543

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.20  E-value=2.6e-11  Score=74.48  Aligned_cols=44  Identities=23%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      ..||.+|+.||..||..+.+.|+||++||+.|++||..|++--.
T Consensus        14 ~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~   57 (80)
T 1nlw_A           14 AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (80)
T ss_dssp             HHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999998888999999999999999999987543

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.94  E-value=2.1e-10  Score=67.13  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             cHHHHHHHHHHhcCCCCCCC---CCccHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWVPKD---TKLSKLDTLRLATSYILHLKM   42 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~---kkLSKietLr~Ai~YI~~L~~   42 (74)
                      ..||++|+.|+..||.....   .|+||.+||..|++||..|+.
T Consensus        18 ~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~   61 (65)
T 1an4_A           18 DKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            36999999999999986543   589999999999999999986

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=98.91  E-value=1.9e-10  Score=67.86  Aligned_cols=43  Identities=28%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             cHHHHHHHHHHhcCCCCC----CCCCccHHHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWVP----KDTKLSKLDTLRLATSYILHLKMLL   44 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~----~~kkLSKietLr~Ai~YI~~L~~~L   44 (74)
                      ..||.+|+.|+..||...    ++.++||.+||..|++||..|++-+
T Consensus        15 ~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A           15 NRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            369999999999999632    2589999999999999999998643

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=98.91  E-value=1.8e-09  Score=66.15  Aligned_cols=43  Identities=26%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.|+..||.  .+.|++|.+||..|+.||.+|+..++.
T Consensus        19 ~~in~~f~~L~~lvP~--~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~   61 (82)
T 1am9_A           19 SSINDKIIELKDLVVG--TEAKLNKSAVLRKAIDYIRFLQHSNQK   61 (82)
T ss_dssp             HHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999997  357999999999999999999987654

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.75  E-value=2.2e-08  Score=60.59  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      .||+.|..|+..||.  ...|++|..||+.|+.||..|+..+.
T Consensus        22 ~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B           22 QFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             HHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            589999999999994  45799999999999999999998764

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=98.66  E-value=4.1e-08  Score=63.74  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHHHHHhccC
Q psy1721           3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLKMLLSQQQ   48 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~~~L~~~~   48 (74)
                      .||+.|..|+..||... .+.|++|..||..|+.||.+|+...+...
T Consensus        41 ~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~   87 (118)
T 4ati_A           41 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK   87 (118)
T ss_dssp             HHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999753 46799999999999999999987665443

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.62  E-value=1.7e-08  Score=61.14  Aligned_cols=41  Identities=24%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHH
Q psy1721           3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKML   43 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~   43 (74)
                      .||+.|+.|+..||.. ....|++|.+||+.|+.||..|+..
T Consensus        23 rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~   64 (73)
T 4h10_A           23 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   64 (73)
T ss_dssp             HHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence            6899999999999953 3468999999999999999998754

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.91  E-value=1.8e-05  Score=57.24  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           3 ILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      .+|..|..|+..||  ....||.|..+|++|+.||..++.+-.
T Consensus        26 ~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~~   66 (361)
T 4f3l_A           26 QFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETTA   66 (361)
T ss_dssp             HHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence            68999999999999  346799999999999999999987643

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.89  E-value=3.2e-05  Score=48.04  Aligned_cols=43  Identities=21%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhcCCCC-CCCCCccHHHHHHHHHHHHHHHHHHHh
Q psy1721           3 ILSKAFFRLKTTLPWV-PKDTKLSKLDTLRLATSYILHLKMLLS   45 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~-~~~kkLSKietLr~Ai~YI~~L~~~L~   45 (74)
                      +||+.+..|...||.. .++.|.+|=.||+.|++||.+|++-.+
T Consensus         6 nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~   49 (83)
T 4ath_A            6 NINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ   49 (83)
T ss_dssp             HHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred             hHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999974 357899999999999999999987443

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.36  E-value=9.4e-05  Score=54.18  Aligned_cols=39  Identities=26%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHhcCCCCC-CCCCccHHHHHHHHHHHHHHHH
Q psy1721           3 ILSKAFFRLKTTLPWVP-KDTKLSKLDTLRLATSYILHLK   41 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~-~~kkLSKietLr~Ai~YI~~L~   41 (74)
                      .+|..|..|+..||... ...||.|..+|++|+.||..|+
T Consensus        27 ~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B           27 KMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             HHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence            58999999999999632 4579999999999999999987

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=96.23  E-value=0.0086  Score=40.10  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHHH
Q psy1721           3 ILSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHLK   41 (74)
Q Consensus         3 ~lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L~   41 (74)
                      .|+-+|++|.+.+|..|. -.||.|--+|+.|.++.+.|-
T Consensus        95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~  134 (138)
T 3muj_A           95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY  134 (138)
T ss_dssp             CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence            478899999999999885 479999999999999988774

>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A

Probab=89.05  E-value=0.068  Score=40.87  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhcCCCCCC-CCCccHHHHHHHHHHHHHHH
Q psy1721           4 LSKAFFRLKTTLPWVPK-DTKLSKLDTLRLATSYILHL   40 (74)
Q Consensus         4 lN~Af~~LR~~lP~~~~-~kkLSKietLr~Ai~YI~~L   40 (74)
                      |+-+|++|.+.+|..|. -.+|+|--+|+.|.++.+.|
T Consensus       322 IdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal  359 (402)
T 3mlp_A          322 IDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL  359 (402)
T ss_dssp             TTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred             cccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence            45689999999999875 37999999999999988877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	8e-06
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	2e-05
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	7e-05
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	8e-05
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	3e-04
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	0.002

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 8e-06
 Identities = 12/55 (21%), Positives = 22/55 (40%)

Query: 4  LSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
          L  +  +LK  +P  P  ++ + L  L  A  +I  L+    +         +EQ
Sbjct: 16 LRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
             L ++FF L+  +P +  + K  K+  L+ AT+YIL ++    +   +     K +
Sbjct: 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRR 75

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 7e-05
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 1  MRILSKAFFRLKTTLPWV---PKDTKLSKLDTLRLATSYILHLK 41
             ++    +L   +P        +  SK   L  A+ YI  L+
Sbjct: 17 RDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (80), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ 46
          +  +++AF  LK +    P + +L K++ LR A  YI  L+ LL  
Sbjct: 24 LSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD 68

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (77), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 1  MRILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQQQDDPSHTHKEQ 58
             +  +F  L+ ++P +    K S+   L  AT YI +++      Q D     ++ 
Sbjct: 14 RDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 31.0 bits (70), Expect = 0.002
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 1  MRILSKAFFRLKTTLPWVPK----DTKLSKLDTLRLATSYILHLK 41
             L+ A   L + +P   K        SK  T+  A  YI HL+
Sbjct: 14 RNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.47
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.23
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.11
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	98.94
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	98.91

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.5e-14  Score=84.01  Aligned_cols=44  Identities=34%  Similarity=0.466  Sum_probs=40.0

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      +.||++|+.|+..||..+ .+|+||++||+.|++||.+|+++|++
T Consensus        25 ~~in~~~~~L~~llP~~~-~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_          25 SKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            579999999999999875 46999999999999999999998864

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.8e-12  Score=74.39  Aligned_cols=45  Identities=22%  Similarity=0.198  Sum_probs=41.1

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.|+.+||..+...|+||++||+.|++||..|+..+..
T Consensus        14 ~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~   58 (79)
T d1nlwa_          14 AHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRK   58 (79)
T ss_dssp             HHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999888888999999999999999999987654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.6e-12  Score=76.09  Aligned_cols=45  Identities=29%  Similarity=0.480  Sum_probs=41.2

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.||..||..+.+.|+||.+||+.|++||..|+..++.
T Consensus        19 ~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~   63 (88)
T d1nkpa_          19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK   63 (88)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999887888999999999999999999987654

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.7e-11  Score=71.70  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.|+.+||..+ ++|+||++||+.|++||..|+.-+..
T Consensus        15 ~~in~~f~~L~~llP~~~-~~k~sK~~iL~~A~~yI~~L~~~~~~   58 (83)
T d1nkpb_          15 DHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHT   58 (83)
T ss_dssp             HHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999764 56999999999999999999876543

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=2.4e-11  Score=69.76  Aligned_cols=43  Identities=28%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHHhcCCC----CCCCCCccHHHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPW----VPKDTKLSKLDTLRLATSYILHLKMLL   44 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~----~~~~kkLSKietLr~Ai~YI~~L~~~L   44 (74)
                      ..||++|+.||..||.    ...+.|+||.+||+.|++||.+|++-+
T Consensus        15 ~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_          15 NRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999994    235789999999999999999998643

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-10  Score=65.71  Aligned_cols=43  Identities=26%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||+.|+.||..||..  .+|.||.+||..||+||..|+.-.+.
T Consensus         2 ~~in~~f~~L~~lvP~~--~~K~~Ka~iL~~Ai~YI~~Lq~~~~~   44 (61)
T d1uklc_           2 SSINDKIIELKDLVMGT--DAKMHKSGVLRKAIDYIKYLQQVNHK   44 (61)
T ss_dssp             CCHHHHHHHHHHHHSCS--SCCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhCCCC--CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999953  56999999999999999999987654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.8e-11  Score=67.70  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=36.5

Q ss_pred             cHHHHHHHHHHhcCCCCC---CCCCccHHHHHHHHHHHHHHHHH
Q psy1721           2 RILSKAFFRLKTTLPWVP---KDTKLSKLDTLRLATSYILHLKM   42 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~---~~kkLSKietLr~Ai~YI~~L~~   42 (74)
                      ..||++|+.|+..||...   .+.|+||.+||+.|++||..|++
T Consensus        18 ~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~   61 (65)
T d1an4a_          18 DKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ   61 (65)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999743   46799999999999999999985

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=8.4e-10  Score=65.53  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHHhcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHhc
Q psy1721           2 RILSKAFFRLKTTLPWVPKDTKLSKLDTLRLATSYILHLKMLLSQ   46 (74)
Q Consensus         2 ~~lN~Af~~LR~~lP~~~~~kkLSKietLr~Ai~YI~~L~~~L~~   46 (74)
                      ..||++|+.|+..||..  ..|+||.+||..|++||..|+.-.+.
T Consensus        19 ~~in~~~~~L~~llP~~--~~k~~K~~iL~~a~~yI~~L~~~~~~   61 (80)
T d1am9a_          19 SSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQK   61 (80)
T ss_dssp             HHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999963  56999999999999999999976653