Psyllid ID: psy1725
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | 2.2.26 [Sep-21-2011] | |||||||
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | N/A | 0.348 | 0.532 | 0.571 | 5e-96 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | N/A | 0.408 | 0.624 | 0.501 | 3e-94 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | N/A | 0.408 | 0.624 | 0.501 | 6e-94 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | N/A | 0.348 | 0.532 | 0.555 | 9e-94 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | N/A | 0.401 | 0.613 | 0.511 | 6e-90 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | N/A | 0.401 | 0.613 | 0.511 | 7e-89 | |
| P30638 | 520 | Putative transporter ZK63 | yes | N/A | 0.244 | 0.394 | 0.552 | 2e-80 | |
| Q8N434 | 492 | Putative transporter SVOP | no | N/A | 0.309 | 0.526 | 0.385 | 2e-49 | |
| Q6PDF3 | 494 | Putative transporter SVOP | no | N/A | 0.309 | 0.524 | 0.381 | 4e-49 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | N/A | 0.311 | 0.515 | 0.363 | 3e-46 |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 352 bits (904), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/306 (57%), Positives = 217/306 (70%), Gaps = 14/306 (4%)
Query: 144 QELEMNSVSIVP-------DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS 196
+ +E+ + VP DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILS
Sbjct: 46 EAVELEDGTTVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILS 105
Query: 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256
IL+P LHC+W++ +Q AL T++VF+GMM SS+ WG VSD+YGR+ L + + YYGI
Sbjct: 106 ILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGI 165
Query: 257 LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV 316
LS+ AP Y+W+L LRGLVGF IG VPQSVTLYAEFLP K RAKC++L++ FWALG FEV
Sbjct: 166 LSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEV 225
Query: 317 LLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADN 376
LLA+ VMPTLGW+WLL LS PL+ FA +C WLPESARY V SG EKALATL+ IA +N
Sbjct: 226 LLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLKRIATEN 285
Query: 377 GKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLT 436
G PM LG+L+V E RG+++DL S Q R T+LLLW+IW+ + + LT
Sbjct: 286 GAPMPLGKLIVSRQ---EDRGKIRDLFSPQFRCTTLLLWFIWF----SNAFSYYGLVLLT 338
Query: 437 VTLFVA 442
LF A
Sbjct: 339 TELFQA 344
|
Xenopus laevis (taxid: 8355) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (889), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 235/357 (65%), Gaps = 15/357 (4%)
Query: 100 ENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMNSVSIVP---- 155
E + Q ++ V G + E S + G ++ + +E++ + VP
Sbjct: 2 EEDLFQLRQLPVVKFRRTGESARSEDDTASGEHEVQIEGVHVGLEAVELDDGAAVPKEFA 61
Query: 156 ---DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ 212
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q
Sbjct: 62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121
Query: 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272
AL T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRG
Sbjct: 122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332
LVGF IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLL 241
Query: 333 ALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMV 392
LS PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++
Sbjct: 242 ILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-- 299
Query: 393 GEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGV 449
E RG+++DL + R T+LLLW+IW+ + + LT LF A G + G+
Sbjct: 300 -EDRGKMRDLFTPHFRWTTLLLWFIWF----SNAFSYYGLVLLTTELFQA-GDVCGI 350
|
Homo sapiens (taxid: 9606) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 234/357 (65%), Gaps = 15/357 (4%)
Query: 100 ENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMNSVSIVP---- 155
E + Q ++ V G + E S + G + + +E++ + VP
Sbjct: 2 EEDLFQLRQLPVVKFCRTGESARSEDDTASGEHEVQIEGVRVGLEAVELDDGAAVPKEFA 61
Query: 156 ---DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ 212
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q
Sbjct: 62 NPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121
Query: 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272
AL T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRG
Sbjct: 122 VALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332
LVGF IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLL 241
Query: 333 ALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMV 392
LS PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++
Sbjct: 242 ILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-- 299
Query: 393 GEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGV 449
E RG+++DL + R T+LLLW+IW+ + + LT LF A G + G+
Sbjct: 300 -EDRGKMRDLFTPHFRWTTLLLWFIWF----SNAFSYYGLVLLTTELFQA-GDVCGI 350
|
Pongo abelii (taxid: 9601) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 170/306 (55%), Positives = 217/306 (70%), Gaps = 14/306 (4%)
Query: 144 QELEMNSVSIVP-------DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS 196
+ +E++ + VP DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILS
Sbjct: 46 EAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILS 105
Query: 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256
IL+P LHC+W++ +Q AL T++VF+GMM SST WG +SD+YGRK L + + YYGI
Sbjct: 106 ILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGI 165
Query: 257 LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV 316
LS+ AP Y+W+L LRGLVGF IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV
Sbjct: 166 LSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEV 225
Query: 317 LLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADN 376
+LA+ VMP+LGW+WLL LS PLL FA +C WLPESARY V SG EKA+ATL+ IA +N
Sbjct: 226 VLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATEN 285
Query: 377 GKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLT 436
G PM LG+L++ E RG+++DL + R T+LLLW+IW+ + + LT
Sbjct: 286 GAPMPLGKLIISRQ---EDRGKMRDLFTPHFRWTTLLLWFIWF----SNAFSYYGLVLLT 338
Query: 437 VTLFVA 442
LF A
Sbjct: 339 TELFQA 344
|
Bos taurus (taxid: 9913) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 230/350 (65%), Gaps = 14/350 (4%)
Query: 100 ENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMNSVSIVP---- 155
E + Q ++ V G + E A S G + + +E++ + VP
Sbjct: 2 EEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDVQIEGVRVGLEAVELDDGAAVPKEFA 61
Query: 156 ---DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ 212
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q
Sbjct: 62 NPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121
Query: 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272
AL T++VF+GMM SST WG +SD+YGRK L + YYGILS+ AP Y+W+L LRG
Sbjct: 122 VALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRG 181
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332
LVGF IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLL 241
Query: 333 ALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMV 392
LS APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++
Sbjct: 242 LLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-- 299
Query: 393 GEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
E RG+++DL + R T+LLLW+IW+ + + LT LF A
Sbjct: 300 -EDRGKMRDLFTPHFRWTTLLLWFIWF----SNAFSYYGLVLLTTELFQA 344
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 329 bits (843), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 231/350 (66%), Gaps = 14/350 (4%)
Query: 100 ENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMNSVSIVP---- 155
E + Q ++ V G + E A S G + + +E++ + VP
Sbjct: 2 EEDLFQLRQLPVVKFRRTGESARSEDDAASGEHDIQIEGVRVGLEAIELDDGAAVPKEFA 61
Query: 156 ---DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ 212
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q
Sbjct: 62 NPTDDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQ 121
Query: 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272
AL T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRG
Sbjct: 122 VALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRG 181
Query: 273 LVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332
LVGF IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL
Sbjct: 182 LVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLL 241
Query: 333 ALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMV 392
LS APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++
Sbjct: 242 LLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ-- 299
Query: 393 GEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
E RG+++DL + R T+LLLW+IW+ + + LT LF A
Sbjct: 300 -EDRGKMRDLFTPHFRWTTLLLWFIWF----SNAFSYYGLVLLTTELFQA 344
|
Mus musculus (taxid: 10090) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 189/266 (71%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
+ TFTV +AV A GFG+FQ KLS+ TG+ WMAD+MEM +LS++SPAL C+W I+ QQAL
Sbjct: 64 EKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQAL 123
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
TT VF GMMLSSTFWG + DR+GR++ LT ++ G++S ++P + +LF RGL G
Sbjct: 124 VTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTG 183
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP+ QRAKCVVL++ FWA+GA FE LLA VM + GW+ L+ LS
Sbjct: 184 FGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLS 243
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
+ PL FA WLPESAR+ +ASG PE+AL TL+ A N + GRLV E
Sbjct: 244 SLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSSTKAGSES 303
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVS 421
RG + +LLS LR T++LLW IW ++
Sbjct: 304 RGDIANLLSPDLRKTTILLWCIWAIT 329
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 156/262 (59%), Gaps = 3/262 (1%)
Query: 157 DTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALT 216
TFTV AV GFG+F L L G + ++ME+ +++++SP + C+WQ+ +Q AL
Sbjct: 30 KTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALV 89
Query: 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276
TT+VF G M+ S +G ++DRYGR + L + + Y+ +L+S APSY W +FLR +VG
Sbjct: 90 TTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGC 149
Query: 277 AIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336
+ Q + + EFLP+K R + L FW G+ + LA +++PT+GW+WL+ +++
Sbjct: 150 GVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVAS 209
Query: 337 APLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHR 396
P + ++PESAR++V++G ALATL +A N M G+LV V E R
Sbjct: 210 IPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLV---EPVLEKR 266
Query: 397 GRVKDLLSVQLRTTSLLLWYIW 418
GR DLL + T+L +W IW
Sbjct: 267 GRFADLLDAKYLRTTLQIWVIW 288
|
Homo sapiens (taxid: 9606) |
| >sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 156/262 (59%), Gaps = 3/262 (1%)
Query: 157 DTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALT 216
TFTV AV GFG+F L L G + ++ME+ +++++SP + C+WQ+ +Q A
Sbjct: 30 KTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFV 89
Query: 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276
TT+VF G M+SS +G ++DRYGR + L L + Y+ +L+S +PSY W +FLR +VG
Sbjct: 90 TTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGC 149
Query: 277 AIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336
+ Q + + EFLP+K R + L FW G+ + +A +V+PT+GW+WL+ +++
Sbjct: 150 GVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIAS 209
Query: 337 APLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHR 396
P + ++PESAR++V++G + AL TL IA N M G+LV + E R
Sbjct: 210 IPGIILIMAFKFIPESARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLV---EPILEKR 266
Query: 397 GRVKDLLSVQLRTTSLLLWYIW 418
GR DLL + T+L +W IW
Sbjct: 267 GRFADLLDSKYLRTTLQIWIIW 288
|
Mus musculus (taxid: 10090) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 154/264 (58%), Gaps = 3/264 (1%)
Query: 159 FTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTT 218
+TV +AV + GFG F L + G + ++ME+ +L+++SP + C+W + +Q AL +T
Sbjct: 49 YTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVST 108
Query: 219 IVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAI 278
+VF G M+ GY++D+YGR + + V Y+ L+S + SY W +FLR +VG +
Sbjct: 109 MVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGCGV 168
Query: 279 GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338
Q L EF+P+K RA + L FW +G+ ++L + V+PT+GW+W++ S P
Sbjct: 169 AATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIRFSVIP 228
Query: 339 LLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGR 398
L + ++PESAR+ V++G + A++TL+ IA N + G L + V E RG
Sbjct: 229 SLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMNNGVLPEGEL--REPEVTE-RGN 285
Query: 399 VKDLLSVQLRTTSLLLWYIWYVSK 422
L+S R TSLLLWY W+V+
Sbjct: 286 AVTLISSAFRRTSLLLWYSWFVAS 309
|
Danio rerio (taxid: 7955) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| 189237649 | 505 | PREDICTED: similar to SVOP protein [Trib | 0.336 | 0.558 | 0.805 | 1e-133 | |
| 270006865 | 501 | hypothetical protein TcasGA2_TC013255 [T | 0.335 | 0.560 | 0.804 | 1e-131 | |
| 242008957 | 507 | sugar transporter, putative [Pediculus h | 0.265 | 0.437 | 0.744 | 1e-125 | |
| 193617990 | 510 | PREDICTED: synaptic vesicle 2-related pr | 0.265 | 0.435 | 0.748 | 1e-123 | |
| 157136157 | 519 | sugar transporter [Aedes aegypti] gi|108 | 0.336 | 0.543 | 0.753 | 1e-119 | |
| 170050883 | 518 | SVOP protein [Culex quinquefasciatus] gi | 0.324 | 0.525 | 0.770 | 1e-118 | |
| 118777673 | 472 | AGAP007660-PA [Anopheles gambiae str. PE | 0.324 | 0.576 | 0.762 | 1e-117 | |
| 156545744 | 512 | PREDICTED: synaptic vesicle 2-related pr | 0.333 | 0.544 | 0.707 | 1e-115 | |
| 307169080 | 738 | Synaptic vesicle 2-related protein [Camp | 0.340 | 0.386 | 0.667 | 1e-112 | |
| 332028284 | 517 | Synaptic vesicle 2-related protein [Acro | 0.339 | 0.549 | 0.665 | 1e-111 |
| >gi|189237649|ref|XP_001811945.1| PREDICTED: similar to SVOP protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/283 (80%), Positives = 253/283 (89%), Gaps = 1/283 (0%)
Query: 137 SGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS 196
+ EN + Q++EM SVS+VPDDT+TV+QAVNA GFG FQ KLSL+TGLCWMADSMEMTILS
Sbjct: 28 TAENGLPQDIEMASVSVVPDDTYTVTQAVNALGFGWFQVKLSLWTGLCWMADSMEMTILS 87
Query: 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256
ILSPALHCDW I+RYQQALTTT+VFLGMMLSSTFWG +SDRYGRK ALTLCAVLLFYYG+
Sbjct: 88 ILSPALHCDWHISRYQQALTTTVVFLGMMLSSTFWGNLSDRYGRKHALTLCAVLLFYYGL 147
Query: 257 LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV 316
LSS+APS+ W+L LRGLVGFAIGC PQSVTLYAEFLP+KQRAKCVVLLDCFWALGACFEV
Sbjct: 148 LSSIAPSFMWILLLRGLVGFAIGCTPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACFEV 207
Query: 317 LLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADN 376
LAL+VMPTLGW+WLLALST PLLAFA +CPWLPESAR+HVASGQ +KAL TL +IA DN
Sbjct: 208 ALALVVMPTLGWQWLLALSTGPLLAFALVCPWLPESARFHVASGQTDKALETLEKIAKDN 267
Query: 377 GKPMLLGRLVVDDSMVGE-HRGRVKDLLSVQLRTTSLLLWYIW 418
GKPMLLGRLVVDD+ HRGR +DLL LR TSLLLW+IW
Sbjct: 268 GKPMLLGRLVVDDATTSSPHRGRFRDLLVPSLRRTSLLLWFIW 310
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270006865|gb|EFA03313.1| hypothetical protein TcasGA2_TC013255 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/282 (80%), Positives = 252/282 (89%), Gaps = 1/282 (0%)
Query: 137 SGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS 196
+ EN + Q++EM SVS+VPDDT+TV+QAVNA GFG FQ KLSL+TGLCWMADSMEMTILS
Sbjct: 28 TAENGLPQDIEMASVSVVPDDTYTVTQAVNALGFGWFQVKLSLWTGLCWMADSMEMTILS 87
Query: 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256
ILSPALHCDW I+RYQQALTTT+VFLGMMLSSTFWG +SDRYGRK ALTLCAVLLFYYG+
Sbjct: 88 ILSPALHCDWHISRYQQALTTTVVFLGMMLSSTFWGNLSDRYGRKHALTLCAVLLFYYGL 147
Query: 257 LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV 316
LSS+APS+ W+L LRGLVGFAIGC PQSVTLYAEFLP+KQRAKCVVLLDCFWALGACFEV
Sbjct: 148 LSSIAPSFMWILLLRGLVGFAIGCTPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACFEV 207
Query: 317 LLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADN 376
LAL+VMPTLGW+WLLALST PLLAFA +CPWLPESAR+HVASGQ +KAL TL +IA DN
Sbjct: 208 ALALVVMPTLGWQWLLALSTGPLLAFALVCPWLPESARFHVASGQTDKALETLEKIAKDN 267
Query: 377 GKPMLLGRLVVDDSMVGE-HRGRVKDLLSVQLRTTSLLLWYI 417
GKPMLLGRLVVDD+ HRGR +DLL LR TSLLLW+I
Sbjct: 268 GKPMLLGRLVVDDATTSSPHRGRFRDLLVPSLRRTSLLLWFI 309
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008957|ref|XP_002425260.1| sugar transporter, putative [Pediculus humanus corporis] gi|212509016|gb|EEB12522.1| sugar transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/286 (74%), Positives = 247/286 (86%)
Query: 136 SSGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTIL 195
SSG ++E+ SVS++PDDT+TV+QAVNAFGFGKFQ KLS +TG+CWMADSMEMTIL
Sbjct: 30 SSGRTNEEPDIELTSVSVIPDDTYTVTQAVNAFGFGKFQVKLSFFTGICWMADSMEMTIL 89
Query: 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG 255
SILSPALHC W I+RYQ+ALTTT+VFLGMMLSSTFWG +SD+YGRK ALTLCA LLF+YG
Sbjct: 90 SILSPALHCTWHISRYQEALTTTVVFLGMMLSSTFWGNLSDKYGRKTALTLCAYLLFWYG 149
Query: 256 ILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315
+LS+ +P+Y W+L LRG+VGFAIGCVPQSVTLYAEFLP+KQRAKCVVLLDCFWALGAC E
Sbjct: 150 LLSAASPNYIWLLGLRGMVGFAIGCVPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACVE 209
Query: 316 VLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAAD 375
VLLAL +MPTLGWKWLLA+STAPLLAF CP LPESAR+HVASGQ EKAL TL+ +A +
Sbjct: 210 VLLALFIMPTLGWKWLLAISTAPLLAFVICCPLLPESARFHVASGQQEKALETLQRVAKE 269
Query: 376 NGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVS 421
NGKPMLLGRLVV+ + RGR++DLL LR TS+LLW+IW S
Sbjct: 270 NGKPMLLGRLVVEGTSPSSQRGRIQDLLGPDLRKTSILLWFIWLTS 315
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193617990|ref|XP_001945003.1| PREDICTED: synaptic vesicle 2-related protein-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/278 (74%), Positives = 244/278 (87%)
Query: 143 GQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPAL 202
Q+ EM++V++VPD+T+TV+QAV+AFGFG+FQ KLSL+TGLCWMADSME TILSILSP L
Sbjct: 28 AQDFEMSNVTVVPDETYTVAQAVDAFGFGRFQVKLSLFTGLCWMADSMETTILSILSPTL 87
Query: 203 HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP 262
+WQIT +QQAL TT+VF+GMMLS FWG SD++GRK ALTLC+VLLFY+GILSS++P
Sbjct: 88 QYEWQITLFQQALATTVVFMGMMLSLPFWGSFSDKFGRKTALTLCSVLLFYFGILSSMSP 147
Query: 263 SYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322
+YTW+L LRGLVGFAIGC PQSVTLYAEFLP KQRAKCVVLLDCFWALGACFEVLLALIV
Sbjct: 148 NYTWLLVLRGLVGFAIGCSPQSVTLYAEFLPCKQRAKCVVLLDCFWALGACFEVLLALIV 207
Query: 323 MPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLL 382
MPTLGWKWLL LSTAPLL FAC+CPWLPESA+Y V +GQ +KA+ TL+++A DNGKPMLL
Sbjct: 208 MPTLGWKWLLVLSTAPLLGFACVCPWLPESAKYLVTNGQTDKAIDTLKKVAYDNGKPMLL 267
Query: 383 GRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYV 420
GRLVVDD ++ E RG DLL QLR +S+LLW+IW V
Sbjct: 268 GRLVVDDVVLEEKRGSFTDLLLPQLRVSSILLWFIWLV 305
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157136157|ref|XP_001663679.1| sugar transporter [Aedes aegypti] gi|108870029|gb|EAT34254.1| AAEL013489-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/284 (75%), Positives = 234/284 (82%), Gaps = 2/284 (0%)
Query: 135 PSSGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTI 194
P +G E E+ SVS+VPDDTFTV+QAVNA GFG FQ KLSL GLCWMADSMEMTI
Sbjct: 51 PINGNGGAPPEFELASVSVVPDDTFTVTQAVNALGFGWFQVKLSLCVGLCWMADSMEMTI 110
Query: 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254
LS+L PALHCDW ITRYQQAL TT+VFLGMMLSSTFWG++SDRYGRK ALTLC VLL Y
Sbjct: 111 LSVLGPALHCDWGITRYQQALVTTVVFLGMMLSSTFWGHLSDRYGRKPALTLCGVLLILY 170
Query: 255 GILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACF 314
G+LSS+APS+ W+L LRGLVGFAIGCVPQSVTLYAEFLP+KQRAKCVVLLDCFWALGACF
Sbjct: 171 GLLSSVAPSFGWLLLLRGLVGFAIGCVPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACF 230
Query: 315 EVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAA 374
EV LAL V P LGW+WLL LS APL AFA I PWLPESARYHVASGQ +KAL TL +IA
Sbjct: 231 EVALALAVGPNLGWRWLLGLSAAPLFAFAVITPWLPESARYHVASGQSDKALTTLEQIAK 290
Query: 375 DNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIW 418
DN +PMLLGRLVV+ RG VK LL LR T+LLLW+IW
Sbjct: 291 DNKRPMLLGRLVVEGP--SGSRGSVKALLGSSLRRTTLLLWFIW 332
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170050883|ref|XP_001861512.1| SVOP protein [Culex quinquefasciatus] gi|167872389|gb|EDS35772.1| SVOP protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/274 (77%), Positives = 230/274 (83%), Gaps = 2/274 (0%)
Query: 145 ELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHC 204
E E+ SVS+VPDDTFTV+QAVNA GFG FQ KLSL GLCWMADSMEMTILS+L PALHC
Sbjct: 60 EFELASVSVVPDDTFTVTQAVNALGFGWFQVKLSLCVGLCWMADSMEMTILSVLGPALHC 119
Query: 205 DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY 264
DW ITRYQQAL TT+VFLGMMLSSTFWG++SDRYGRK ALTLC VLLF YG+LSS+APS+
Sbjct: 120 DWGITRYQQALVTTVVFLGMMLSSTFWGHLSDRYGRKPALTLCGVLLFLYGLLSSVAPSF 179
Query: 265 TWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324
W+L LRGLVGFAIGCVPQSVTLYAEFLP+KQRAKCVVLLDCFWALGACFEV LAL V P
Sbjct: 180 GWLLLLRGLVGFAIGCVPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACFEVALALAVGP 239
Query: 325 TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGR 384
LGW+WLL LS APL AFA I PWLPESARYHV SGQ +KAL TL +IA DN +PMLLGR
Sbjct: 240 NLGWRWLLGLSAAPLFAFAVITPWLPESARYHVTSGQSDKALTTLEQIAKDNKRPMLLGR 299
Query: 385 LVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIW 418
LVV+ RG K LL LR T+LLLW+IW
Sbjct: 300 LVVEGP--SGSRGSFKALLGSSLRRTTLLLWFIW 331
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|118777673|ref|XP_308210.3| AGAP007660-PA [Anopheles gambiae str. PEST] gi|116132015|gb|EAA04631.3| AGAP007660-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/274 (76%), Positives = 231/274 (84%), Gaps = 2/274 (0%)
Query: 145 ELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHC 204
E E+ SVS+VPDDT+TV+QAVNA GFG FQ KLSL GLCWMADSMEMTILS+L PALHC
Sbjct: 8 EFELASVSVVPDDTYTVTQAVNALGFGWFQVKLSLCVGLCWMADSMEMTILSVLGPALHC 67
Query: 205 DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY 264
DW I+RYQQAL TT+VFLGMMLSSTFWG++SDRYGRK ALTLC VLLF YG+LSS+APS+
Sbjct: 68 DWGISRYQQALVTTVVFLGMMLSSTFWGHLSDRYGRKPALTLCGVLLFLYGLLSSVAPSF 127
Query: 265 TWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324
W+L LRGLVGFAIGCVPQSVTLYAEFLP+KQRAKCVVLLDCFWALGACFEV LAL V P
Sbjct: 128 GWLLLLRGLVGFAIGCVPQSVTLYAEFLPTKQRAKCVVLLDCFWALGACFEVALALAVTP 187
Query: 325 TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGR 384
TLGW+WLL LS APL FA I PWLPESARYHV SGQ +KAL TL +IA DN +PMLLGR
Sbjct: 188 TLGWRWLLGLSAAPLFIFAIITPWLPESARYHVTSGQNDKALNTLEQIAKDNRRPMLLGR 247
Query: 385 LVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIW 418
LVV+ RG +K LL LR T+LLLW+IW
Sbjct: 248 LVVEGP--SGSRGSLKALLGSSLRRTTLLLWFIW 279
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156545744|ref|XP_001605270.1| PREDICTED: synaptic vesicle 2-related protein-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/280 (70%), Positives = 234/280 (83%), Gaps = 1/280 (0%)
Query: 142 MGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPA 201
+ + +E+ SV++VPDDTFTV QA+N GFG+FQ KLSL+TGLCWMADSMEMTILSILSP
Sbjct: 42 LDRSMELTSVAVVPDDTFTVGQAINMLGFGRFQVKLSLFTGLCWMADSMEMTILSILSPT 101
Query: 202 LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA 261
LHCDW I+RYQQALTTT+VFLGMMLSSTFW +SDRYGRKQALTLC VLLFYYG LSS A
Sbjct: 102 LHCDWGISRYQQALTTTVVFLGMMLSSTFWSNLSDRYGRKQALTLCGVLLFYYGFLSSFA 161
Query: 262 PSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALI 321
P++ W+L LRGLVGFAIGCVPQSVTLYAEFLP++QRAKCV+LLDCFWALGACFEV LAL+
Sbjct: 162 PNFLWILLLRGLVGFAIGCVPQSVTLYAEFLPAEQRAKCVILLDCFWALGACFEVALALV 221
Query: 322 VMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPML 381
VMP LGW+WLLALST PL F+ I PWLPESA + + G+ +KA++TL IA +NGKPM
Sbjct: 222 VMPNLGWRWLLALSTIPLFLFSVITPWLPESASFDMMRGRTDKAMSTLERIARENGKPMP 281
Query: 382 LGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVS 421
LGRLV+ D + +G++ DLLS + TS+LLW +W S
Sbjct: 282 LGRLVL-DRVYPTSKGKLIDLLSKDMYKTSVLLWLVWMAS 320
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307169080|gb|EFN61924.1| Synaptic vesicle 2-related protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 235/286 (82%), Gaps = 1/286 (0%)
Query: 136 SSGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTIL 195
+S EN + +E++SV ++PDDTFTV QA+NA GFGKFQ KLSL+TGLCWM DSME+TIL
Sbjct: 35 TSFENGTERSMELSSVVVIPDDTFTVVQAINALGFGKFQVKLSLFTGLCWMVDSMEITIL 94
Query: 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG 255
SILSP+LHCDW I+RYQQALTTT+VFLGMMLSSTFW +SDRYGRKQALTLCAVLL YY
Sbjct: 95 SILSPSLHCDWGISRYQQALTTTVVFLGMMLSSTFWNNLSDRYGRKQALTLCAVLLSYYA 154
Query: 256 ILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315
LSS AP++ W+L LRG+VGFAIGCVPQSVTLYAEFLP+KQRA+CV+LLDCFWALGACFE
Sbjct: 155 FLSSFAPNFLWILLLRGVVGFAIGCVPQSVTLYAEFLPAKQRARCVILLDCFWALGACFE 214
Query: 316 VLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAAD 375
V +ALIVMP LGW+WLL LS+ PL FA I PWLPES + + +G+ ++A++TL +A +
Sbjct: 215 VAIALIVMPNLGWRWLLILSSIPLFIFAVISPWLPESTIFDMTTGKTDRAVSTLERVARE 274
Query: 376 NGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVS 421
N K + +GRLV+D H GR+KD+LS ++ TS LLW +W ++
Sbjct: 275 NKKSLPVGRLVMDRFYQANH-GRLKDVLSKEMCKTSALLWLVWMIT 319
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332028284|gb|EGI68331.1| Synaptic vesicle 2-related protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/290 (66%), Positives = 234/290 (80%), Gaps = 6/290 (2%)
Query: 129 SCPFQWPSSGENMMGQELEMNSVSIVPDDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMAD 188
SCP + N + +E++SV ++PDDTFTV QA+NA GFGKFQ KLSL+TGLCWM D
Sbjct: 32 SCP-----TSLNAIEGSMELSSVVVIPDDTFTVVQAINALGFGKFQVKLSLFTGLCWMVD 86
Query: 189 SMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248
SME+TILSILSP+LHCDW I+RYQQALTTT+VFLGMMLSSTFW +SDRYGRKQALTLCA
Sbjct: 87 SMEITILSILSPSLHCDWGISRYQQALTTTVVFLGMMLSSTFWNNLSDRYGRKQALTLCA 146
Query: 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFW 308
VLL YY LSSLAP++ W+L LRG+VGFAIGCVPQSVTLYAEFLP+KQRA+CV+LLDCFW
Sbjct: 147 VLLAYYAFLSSLAPNFLWILLLRGVVGFAIGCVPQSVTLYAEFLPAKQRARCVILLDCFW 206
Query: 309 ALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALAT 368
ALGACFEV +ALIVMP GW+WLL LS+ PL FA I PWLPES + + +G+ ++A++T
Sbjct: 207 ALGACFEVAIALIVMPNFGWRWLLILSSIPLFIFAVITPWLPESTVFDMTTGKTDRAIST 266
Query: 369 LREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIW 418
L +A +N K + +GRLV+D G H GR KD+LS ++ TS LLW +W
Sbjct: 267 LERVARENKKSLPVGRLVMDRFYQGHH-GRFKDVLSKEMYRTSALLWLVW 315
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 837 | ||||||
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.334 | 0.510 | 0.599 | 1.5e-140 | |
| MGI|MGI:1915916 | 548 | Svop "SV2 related protein" [Mu | 0.334 | 0.510 | 0.595 | 3.9e-140 | |
| RGD|620277 | 548 | Svop "SV2 related protein" [Ra | 0.334 | 0.510 | 0.595 | 3.9e-140 | |
| UNIPROTKB|F1LPX1 | 548 | Svop "Synaptic vesicle 2-relat | 0.334 | 0.510 | 0.595 | 3.9e-140 | |
| UNIPROTKB|Q9Z2I7 | 548 | Svop "Synaptic vesicle 2-relat | 0.334 | 0.510 | 0.595 | 3.9e-140 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.341 | 0.521 | 0.585 | 6.3e-140 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.333 | 0.577 | 0.597 | 6.3e-140 | |
| UNIPROTKB|F1RGB1 | 548 | SVOP "Uncharacterized protein" | 0.334 | 0.510 | 0.592 | 1.3e-139 | |
| UNIPROTKB|G3MZU5 | 547 | SVOP "Synaptic vesicle 2-relat | 0.334 | 0.511 | 0.592 | 1.7e-139 | |
| UNIPROTKB|Q1JP63 | 548 | SVOP "Synaptic vesicle 2-relat | 0.334 | 0.510 | 0.592 | 1.7e-139 |
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 1.5e-140, Sum P(2) = 1.5e-140
Identities = 172/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RGR+KDL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGRMKDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| MGI|MGI:1915916 Svop "SV2 related protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
Identities = 171/287 (59%), Positives = 212/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AAPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
Identities = 171/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
Identities = 171/287 (59%), Positives = 212/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ + E
Sbjct: 245 AAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLII---LKQED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 3.9e-140, Sum P(2) = 3.9e-140
Identities = 171/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFG+FQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEVLLA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
APLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 172/294 (58%), Positives = 215/294 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGV 449
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A G + G+
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA-GDVCGI 350
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 6.3e-140, Sum P(2) = 6.3e-140
Identities = 171/286 (59%), Positives = 210/286 (73%)
Query: 157 DTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALT 216
DTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 1 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 60
Query: 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVGF
Sbjct: 61 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 120
Query: 277 AIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336
IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 121 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLILSA 180
Query: 337 APLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHR 396
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E R
Sbjct: 181 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---EDR 237
Query: 397 GRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
GR+KDL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 238 GRMKDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 279
|
|
| UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 170/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVILAVFVMPSLGWRWLLLLS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
| UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 170/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 64 DDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 123
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 124 LTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 183
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 184 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILS 243
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 244 AVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 300
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 301 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 343
|
|
| UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
Identities = 170/287 (59%), Positives = 211/287 (73%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL 215
DDTF V AV A GFGKFQ KLS+ TGL WMAD+MEM ILSIL+P LHC+W++ +Q AL
Sbjct: 65 DDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVAL 124
Query: 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275
T++VF+GMM SST WG +SD+YGRK L + + YYGILS+ AP Y+W+L LRGLVG
Sbjct: 125 LTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVG 184
Query: 276 FAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335
F IG VPQSVTLYAEFLP K RAKC++L++ FWA+G FEV+LA+ VMP+LGW+WLL LS
Sbjct: 185 FGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILS 244
Query: 336 TAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395
PLL FA +C WLPESARY V SG EKA+ATL+ IA +NG PM LG+L++ E
Sbjct: 245 AVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQ---ED 301
Query: 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVA 442
RG+++DL + R T+LLLW+IW+ S + Y V LT LF A
Sbjct: 302 RGKMRDLFTPHFRWTTLLLWFIWF-SNAFSYYGLVL---LTTELFQA 344
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8N4V2 | SVOP_HUMAN | No assigned EC number | 0.5014 | 0.4086 | 0.6240 | yes | N/A |
| Q5R5T8 | SVOP_PONAB | No assigned EC number | 0.5014 | 0.4086 | 0.6240 | yes | N/A |
| Q1JP63 | SVOP_BOVIN | No assigned EC number | 0.5555 | 0.3488 | 0.5328 | yes | N/A |
| Q9Z2I7 | SVOP_RAT | No assigned EC number | 0.5114 | 0.4014 | 0.6131 | yes | N/A |
| Q8BFT9 | SVOP_MOUSE | No assigned EC number | 0.5114 | 0.4014 | 0.6131 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 837 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 5e-63 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-61 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 4e-26 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 8e-25 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-23 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-18 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-16 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-16 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-13 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-13 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-10 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-09 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 6e-09 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 7e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-08 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 9e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-07 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-06 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-05 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 2e-04 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 3e-04 | |
| PRK09874 | 408 | PRK09874, PRK09874, drug efflux system protein Mdt | 3e-04 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-04 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-04 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-04 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 0.001 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 0.001 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 0.001 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 0.002 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.002 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 5e-63
Identities = 97/400 (24%), Positives = 160/400 (40%), Gaps = 100/400 (25%)
Query: 479 LGAMITPYIA------QALTLCAVLLFYYGILSSLAPSYTWMLFLRGLC----------- 521
LG+ + Y++ + L L ++ G+L++ +P+YT L R L
Sbjct: 142 LGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQA 201
Query: 522 ----------------------FWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 559
F++LG L+A + W+WL + P F
Sbjct: 202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFL 258
Query: 560 ICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV----DDSMVGEHRGRVK 615
+ ++PES R+ ++ G+ E+AL L+ IA NGK + L + D S + +
Sbjct: 259 LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLD 318
Query: 616 DLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDT 675
+ LR T+L L +W AF YYG+VL L
Sbjct: 319 LFRTPNLRKTTLCLMMLW-------------------FTTAFSYYGLVLDLGNLGGN--- 356
Query: 676 RCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKR 735
Y+DL + L E P T+ +I++ GR+
Sbjct: 357 ------------------------------IYLDLFISGLVELPAKLITLLLIDRLGRRY 386
Query: 736 TMAVQFVIFTACVSFLFICTQSRAYLTVTL-FVARGIIAGVFQAAYVYTPEVYPTPLRAV 794
TMA ++ + L +L L + + I FQ Y+YT E+YPT +R +
Sbjct: 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL 446
Query: 795 GVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834
GVG CS MAR+G++I+P++ L + L + + ++G AL
Sbjct: 447 GVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLAL 485
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 2e-61
Identities = 86/278 (30%), Positives = 134/278 (48%), Gaps = 14/278 (5%)
Query: 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILS--ILSPALHCDWQIT---R 210
F V Q N G KLS GL ++ S S + +W +
Sbjct: 68 CLRFMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDA 126
Query: 211 YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFL 270
++ LT + F+G++L S +GY+SDR+GRK+ L L ++ G+L++ +P+YT L
Sbjct: 127 WKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVF 186
Query: 271 RGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329
R LVG I G Q+V L EFLP KQRA L+ F++LG L+A + W+
Sbjct: 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR 243
Query: 330 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV-- 387
WL + P F + ++PES R+ ++ G+ E+AL L+ IA NGK + L +
Sbjct: 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSL 303
Query: 388 --DDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKV 423
D S + + + LR T+L L +W+ +
Sbjct: 304 EKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF 341
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
Query: 186 MADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT 245
+ D ++ + +PA+ +W + Q + +GM + F+G ++DR GR++ L
Sbjct: 27 LMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLL 86
Query: 246 LCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLL 304
+L + +L +LA + T +L LR L G +G +P L +E+ P + R V L+
Sbjct: 87 WSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM 146
Query: 305 DCFWALGACFEVLLALIVMPTLGWKWLLALST-APLLAFACICPWLPESARYHVASGQPE 363
C + +GA LA ++P GW+ L + APLL + +LPES + V+ PE
Sbjct: 147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PE 205
Query: 364 KALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLW 415
+ IA L + G R K L + ++LLW
Sbjct: 206 TVRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKTARITVLLW 256
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-25
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 14/222 (6%)
Query: 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSS 228
G G+FQ L GL MAD +E+ ++ + P+ D I + + IV+LGMM+ +
Sbjct: 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGA 219
Query: 229 TFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAI-GCVPQSVTL 287
FWG ++D+ GRKQ L +C + ++ SS Y + LF R L GF I G +P +
Sbjct: 220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSY 279
Query: 288 YAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL--ALSTAPLLAFACI 345
+AEFL ++R + + L FW +G + +A ++P GW + + A F +
Sbjct: 280 FAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV 339
Query: 346 CPW-----------LPESARYHVASGQPEKALATLREIAADN 376
C + +PES R+ + +G+ ++A L+ I N
Sbjct: 340 CAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-23
Identities = 84/348 (24%), Positives = 136/348 (39%), Gaps = 32/348 (9%)
Query: 182 GLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK 241
L + ++ +LS P L D ++ Q L + LG L S GY+SDR+GR+
Sbjct: 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR 64
Query: 242 QALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKC 300
+ L L +L +L + A S +L R L+G G + + AE+ P K+R +
Sbjct: 65 RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRA 124
Query: 301 VVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP---------- 350
+ L + LGA LL ++ +LGW+WL + L A + +L
Sbjct: 125 LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAF 184
Query: 351 ---ESARYHVASGQPEKALATLREIAADNGK-------PMLLGRLVVDDSMVGEHRGRVK 400
Y + + P L AA+ G +LG L+ ++ + GR +
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG--GLLSDRLGRRR 242
Query: 401 DLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEV 460
LL + LLL + + + A L V L + + F A E+
Sbjct: 243 LLLLI-----GLLLAALGLL----LLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 461 YPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLA 508
P R G + LG + P +A L + IL++LA
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALA 341
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 4e-18
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 6/167 (3%)
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY-TWMLFL 270
L +I +G ++ S F G + DR+GRK++L + VL +L A +ML +
Sbjct: 47 LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106
Query: 271 -RGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV---MPT 325
R +VG +G + V +Y +E P K R L G ++ L + +
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 326 LGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
GW+ L L P + +LPES R+ V G+ E+A A L ++
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKL 213
|
Length = 449 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 435 LTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLC 494
T + + I FQ Y+YT E+YPT +R +GVG CS MAR+G++I+P++
Sbjct: 413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW 472
Query: 495 AVL-LFYYGILSSLAPSYTWMLFL 517
L L +G L+ LA T LFL
Sbjct: 473 LFLPLVLFGGLALLAGILT--LFL 494
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 212 QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPS---YTWML 268
L +I +G + + F G++SDR+GRK++L L LLF G + + ML
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL-LIIALLFVIGAILMGLAAFALSVEML 130
Query: 269 FL-RGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP-- 324
+ R L+G +G V +Y +E P R L G L+A
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI----LVAYGFGSGK 186
Query: 325 -----TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
TLGW+ L L P +LPES R+ V G+ E+A +L +
Sbjct: 187 VSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARL 239
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 64/303 (21%), Positives = 102/303 (33%), Gaps = 57/303 (18%)
Query: 521 CFWALGACFEVLLALIVMPTLGWKWLLALST-APLLAFACICPWLPESARYHVASGQPEK 579
C + +GA LA ++P GW+ L + APLL + +LPES + V+ PE
Sbjct: 148 CGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PET 206
Query: 580 ALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSY 639
+ IA L + G R K L + ++LLW ++++
Sbjct: 207 VRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFML--- 262
Query: 640 PSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADC 699
Y + +L
Sbjct: 263 ----------------LVGVYFLTNWLPKLM----------------------------- 277
Query: 700 RQLNTQDYMDLLWTTLAEFPGIFATIF---VIEKFGRKRTMAVQFVIFTACVSFLFICTQ 756
+L + L F G+ +I + ++ G + T ++ A + L T
Sbjct: 278 VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL--LLLLGAVFAVLVGSTL 335
Query: 757 SRAYLTVTLFVARGIIAGVFQAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQ 815
L + L G Q+ Y YPT +RA GVG + RLGA+I P +A
Sbjct: 336 FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395
Query: 816 VLL 818
LL
Sbjct: 396 YLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-13
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 2/190 (1%)
Query: 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQAL 244
++A + L L D I+ + L T LG L+ G +SDR+GR++ L
Sbjct: 6 FLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVL 65
Query: 245 TLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL 303
+ +L +L A S +L LR L G G + P + L A++ P ++R + + L
Sbjct: 66 LIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGL 125
Query: 304 LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP-LLAFACICPWLPESARYHVASGQP 362
L + LGA LL ++ GW+ + LLA LP
Sbjct: 126 LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPA 185
Query: 363 EKALATLREI 372
E+A A L
Sbjct: 186 EEAPAPLVPA 195
|
Length = 346 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 3/173 (1%)
Query: 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ 242
L W+ D+ + +++++ + ++ +T A + + + +G DRYGR+
Sbjct: 19 LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL 78
Query: 243 ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA-EFLPSKQRAKCV 301
+ VL + AP Y M R ++G +G S Y E P R K
Sbjct: 79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKAS 138
Query: 302 VLLDCFWALGACFEVLLALIVMPTLG--WKWLLALSTAPLLAFACICPWLPES 352
LL +A+GA + +V+P G W+ L +S P++ + +PE+
Sbjct: 139 GLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL---------APSYTWML---F 269
+G ++ GY S+R+GR+ +L + AVL F + S+ + ++
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 270 LRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV------ 322
R + G +G +Y AE P+ R K V F F L+ V
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLV----SFNQFAIIFGQLVVYFVNYFIAR 181
Query: 323 ------MPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372
+ T GW+++ A P L F + ++PE+ RY ++ G+ E+A LR+I
Sbjct: 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS---SLAPSYTWMLFLRGLVGFAI 278
LG++ + G ++DR GRK+ L + +V LF G+ S + A + +L R L G +
Sbjct: 61 LGLLPGALLGGRLADRIGRKRIL-IVSVALF--GLFSLATAQAWDFPSLLVARLLTGVGL 117
Query: 279 G-CVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL-ST 336
G +P + L +E + + R V L+ C G ++ ++ W+ + +
Sbjct: 118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177
Query: 337 APLLAFACICPWLPESARYHVASGQPEKALATLREIAAD 375
PLL + WLPES + A+G ++ LR + +
Sbjct: 178 GPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216
|
Length = 406 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 3/182 (1%)
Query: 191 EMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250
E + +L P D ++ T LG+ L + ++ R R++ L L
Sbjct: 29 EFVPVGLLPPIAA-DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87
Query: 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGC-VPQSVTLYAEFLPSKQRAKCVVLLDCFWA 309
+LS+LAPS+ +L R L G A G + L A +P +R + + L+
Sbjct: 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLT 147
Query: 310 LGACFEVLLALIVMPTLGWKWL-LALSTAPLLAFACICPWLPESARYHVASGQPEKALAT 368
L V L + GW+ LA++ LLA + LP S G L
Sbjct: 148 LATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL 207
Query: 369 LR 370
LR
Sbjct: 208 LR 209
|
Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
Query: 710 LLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVAR 769
L L G + ++ GR+R + + ++ A L S A L V L +
Sbjct: 217 LSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLG 276
Query: 770 GIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTV 828
+ F A E+ P R G + LG + P +A +LL + +
Sbjct: 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLI 336
Query: 829 YGVAAL 834
AL
Sbjct: 337 LAALAL 342
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 221 FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG-ILSSLAPSYTWMLFLRGLVGFAI- 278
F G++L G + DRYGR+ A+ + +++LF G + AP Y + R ++G +
Sbjct: 70 FGGLLL-----GAMGDRYGRRLAMVI-SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMA 123
Query: 279 GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338
G S T E P R K L +++GA + +V+P GW+ L + P
Sbjct: 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183
Query: 339 LLAFACICPW----LPESA 353
+ FA W LPE+
Sbjct: 184 -IIFAL---WLRKNLPEAE 198
|
Length = 496 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-C 280
LG ++ S G ++DR+GRK L + + + +L+ + T ++ R L GF
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 281 VPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWL-LALSTAPL 339
+ L A+ P ++R + L+ ALG L ++ LGW+ L L+ L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 340 LAFACICPWLPES 352
AF + LPE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY 238
L ++ +L+ L L ++ + L ++ LG +L + G +SDR
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 239 GRKQALTLCAVLLFYYGIL-SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQ 296
GR++ L L +LL G+L +LAPS +L L+GF +G P +TL +E P +
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 297 RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP 350
R L + F +LG LLA +++ T G+ + + A L A + LP
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 64/358 (17%), Positives = 111/358 (31%), Gaps = 94/358 (26%)
Query: 499 FYYGILSSLAPSYT---WMLFLRGLCFWALGACFEVLLAL-------------IVMPTLG 542
G +S L P Y LRG ALG+ +++ + + G
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRG----ALGSLYQLGITFGILVAAIIGLGLNKYSNSDG 168
Query: 543 WKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVV 602
W+ L L P + +LPES R+ V G+ E+A A L + L G V
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK---------LRGVSDV 219
Query: 603 DDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFC---- 658
D + E + + + + L K+ R+ V L
Sbjct: 220 DQEIQEEKDSLERSVEAEKASWLELFR------GKTVRQRLLMGVMLQ--IFQQLTGINA 271
Query: 659 --YYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLA 716
YY + T S+S + + +
Sbjct: 272 IFYYSPTIFETLGL-------SDSLLVTIIVG----------------------VVNFVF 302
Query: 717 EFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVF 776
F IF++++FGR+ + + C L + A L V GI+A VF
Sbjct: 303 TFIA----IFLVDRFGRRPLLLLGAAGMAICFLVLGV-----ALLGVAKSKGAGIVAIVF 353
Query: 777 QA-------------AYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSS 821
+V E++P +R + +A L + ++ ++ +
Sbjct: 354 ILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAI 411
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 78/372 (20%), Positives = 120/372 (32%), Gaps = 89/372 (23%)
Query: 502 GILSSLAPSYTWML---FLRGLC------FWALGACFEVLLALIVMP-------TLGWKW 545
GI S+L P Y + LRG G L+A TLGW+
Sbjct: 142 GIASALVPMYLSEIAPKALRGALTSLYQLAITFGI----LVAYGFGSGKVSLNNTLGWRI 197
Query: 546 LLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNG--KPMLLGRLVVD 603
L L P +LPES R+ V G+ E+A +L + +G K +L ++D
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELID 257
Query: 604 DSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVV 663
E R S+ S RI + +FL GVV
Sbjct: 258 IKRSIEKRSVQPSWGSL----------------FSSTRRIRRRLFL-----------GVV 290
Query: 664 LMTTELFEASDTRCSESPIAA----ASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFP 719
L + F + I A + +F+ + D L + F
Sbjct: 291 LQWFQQF---------TGINAIMYYSPTIFENAGV-STDHAFLVSIIVG--AVNFAFTFV 338
Query: 720 GIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAA 779
IF++++FGR+ + + C+ L I S + G +A VF
Sbjct: 339 A----IFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF---VTGSSKSSGNVAIVFILL 391
Query: 780 Y-------------VYTPEVYPTPLRAVGVGTCSAMARLGAMI----TPYIAQVLLKSSL 822
+ V E++P LR G+ A L I P + + + +
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451
Query: 823 SIAMTVYGVAAL 834
I V L
Sbjct: 452 FIFFGGLNVLGL 463
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 20/167 (11%)
Query: 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252
TI+++ P + D + Q T L +S G+++ R+G ++ L L + F
Sbjct: 19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-LFLISTFAF 77
Query: 253 YYG-ILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLLDCFWAL 310
G +L +AP+ M+ R + GF G +P S + P ++R + + + W L
Sbjct: 78 TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAI----WGL 133
Query: 311 GACFEVLLALIVMPTLG--------WKWLLALSTAPLLAFACICPWL 349
VL+A + PTLG W+W+ L P+ + +
Sbjct: 134 T----VLVAPALGPTLGGWIIENYHWRWIF-LINVPIGIIVVVVAFF 175
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259
P + D +T T+ LG WG +SDRYGR+ L L + + +
Sbjct: 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88
Query: 260 LAPSYTWMLFLRGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL 318
L+ + +L LR + F S L + P ++ ++ +L AL LL
Sbjct: 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL 148
Query: 319 ALIVMPTLGWKWLLA-LSTAPLLAFACICPWLPESARYHVAS 359
++ L W + A LS A +L A I LPE+ Y
Sbjct: 149 GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI 190
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274
L +I FL ++S FWG ++DR GRK L A+ + +L LA + L LR L+
Sbjct: 58 LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALL 117
Query: 275 GFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALG 311
G G VP + L A +P + WALG
Sbjct: 118 GLLGGFVPNANALIATQVPRNKSG---------WALG 145
|
Length = 408 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 762 TVTLFVARGIIAGVF----QAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQV 816
+ + G AG+F Q+ Y P YPT +R GVG A+ RLG+M P +A
Sbjct: 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366
Query: 817 LL 818
LL
Sbjct: 367 LL 368
|
Length = 406 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 714 TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFIC-TQSRAYLTVTLFVARGII 772
TLA PG + +++K GR R +A V+ +C+S F+ S + + L + G+
Sbjct: 605 TLAVLPGNIVSALLMDKIGRLRMLAGSMVL--SCISCFFLSFGNSESAMIALLCLFGGLS 662
Query: 773 AGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMI 809
+ A V T E+YP+ RA G +A+ + A++
Sbjct: 663 IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVL 699
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 719 PGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQ- 777
PG + T+F+++ GRK + F I T F+ + +L+ F+A ++A F
Sbjct: 350 PGYWVTVFLVDIIGRKPIQLMGFFILTV---LFFVLGFAYNHLSTHGFLAIYVLAQFFAN 406
Query: 778 -----AAYVYTPEVYPTPLRAVGVGTCSAMARLGAMI 809
++ EV+PT R+ G +A + GA+I
Sbjct: 407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAII 443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 437 VTLFVARGIIAGVFQAA-----YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA 488
TL + G IAG F Y YPT +RA GVG + RLGA+I P +A
Sbjct: 338 PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 436 TVTLFVARGIIAGVF----QAA-YVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQA 490
+ + G AG+F Q+ Y P YPT +R GVG A+ RLG+M P +A
Sbjct: 307 SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366
Query: 491 L 491
L
Sbjct: 367 L 367
|
Length = 406 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ 242
L + + ++ LS +P L D ++ Q + G ++ G++ DR+G ++
Sbjct: 1 LVTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK 60
Query: 243 ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCV 301
L + V+ + L + A +Y + LR L+G A + L A + P+ +RA V
Sbjct: 61 TLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAV 120
Query: 302 VLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338
+ + LG L ++ W+W +
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVL 157
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 540 TLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 587
T GW+++ A P L F + ++PE+ RY ++ G+ E+A LR+I
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ-----QALTTTIVFLG 223
FG + + G+ + DS ++ +S+++ L + + A +G
Sbjct: 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIG 68
Query: 224 MMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYT------WMLFLRGLVGFA 277
+ F+G+++D+ GRK+ + +++ + S L+P + + F R +G
Sbjct: 69 TLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVG 128
Query: 278 IGC-VPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329
IG P S + +EF K R + + G ++ALIV G+K
Sbjct: 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV--LAGFK 179
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 711 LWTTLAEFPGIFATIF---VIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFV 767
L T A + ++FGR+R + + ++F + L + L V +
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLL-VLRVL 94
Query: 768 ARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818
+F AA + +P R +G SA LGA + P + +L
Sbjct: 95 QGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLA 145
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| KOG0253|consensus | 528 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.98 | |
| KOG0255|consensus | 521 | 99.97 | ||
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| KOG0252|consensus | 538 | 99.96 | ||
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.95 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.93 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| KOG1330|consensus | 493 | 99.92 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.92 | |
| KOG2533|consensus | 495 | 99.92 | ||
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.92 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.92 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.91 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.9 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.9 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| KOG2532|consensus | 466 | 99.9 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.88 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.88 | |
| KOG2504|consensus | 509 | 99.87 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.87 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.87 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.85 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.85 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.82 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.81 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.81 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.8 | |
| KOG2615|consensus | 451 | 99.79 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.78 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.78 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.74 | |
| KOG3764|consensus | 464 | 99.73 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.73 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.69 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.63 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.62 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.58 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.56 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.54 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.52 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.5 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.47 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.46 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.45 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.44 | |
| KOG2563|consensus | 480 | 99.42 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.39 | |
| KOG4686|consensus | 459 | 99.37 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.36 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.35 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.35 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.33 | |
| KOG2325|consensus | 488 | 99.33 | ||
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.28 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.28 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.26 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.23 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.22 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.22 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.19 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.19 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.18 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.17 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.17 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.17 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.16 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.16 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.14 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.14 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.13 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.12 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.1 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.1 | |
| KOG2816|consensus | 463 | 99.1 | ||
| KOG3626|consensus | 735 | 99.08 | ||
| PRK09952 | 438 | shikimate transporter; Provisional | 99.07 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.06 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.03 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.02 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.01 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.99 | |
| KOG0569|consensus | 485 | 98.97 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.92 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.92 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.86 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.86 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.85 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.84 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.84 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.83 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.83 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.82 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.82 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.81 | |
| KOG2504|consensus | 509 | 98.8 | ||
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.79 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.76 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.75 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.75 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.74 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.72 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.71 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.7 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.69 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.67 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.65 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.65 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.65 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.61 | |
| KOG0253|consensus | 528 | 98.6 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.6 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.58 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.54 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.53 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.52 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.52 | |
| KOG4686|consensus | 459 | 98.52 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.52 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.5 | |
| KOG0255|consensus | 521 | 98.5 | ||
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.5 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.47 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.43 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.42 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.39 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.35 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.35 | |
| KOG3764|consensus | 464 | 98.34 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.26 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.25 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.25 | |
| KOG0252|consensus | 538 | 98.25 | ||
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.22 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.21 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.2 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.18 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.17 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.17 | |
| KOG3762|consensus | 618 | 98.17 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.15 | |
| KOG3098|consensus | 461 | 98.13 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.1 | |
| KOG2615|consensus | 451 | 98.08 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.06 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.06 | |
| KOG2532|consensus | 466 | 98.05 | ||
| KOG3762|consensus | 618 | 97.99 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.96 | |
| KOG0254|consensus | 513 | 97.9 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.88 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.84 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.83 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.78 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.74 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.73 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.71 | |
| KOG0637|consensus | 498 | 97.59 | ||
| KOG1237|consensus | 571 | 97.55 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.44 | |
| KOG2533|consensus | 495 | 97.33 | ||
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.26 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.21 | |
| KOG1330|consensus | 493 | 97.19 | ||
| KOG2816|consensus | 463 | 97.05 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.9 | |
| KOG4332|consensus | 454 | 96.75 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.49 | |
| KOG3574|consensus | 510 | 96.34 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.24 | |
| KOG3810|consensus | 433 | 96.12 | ||
| KOG1479|consensus | 406 | 95.99 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.64 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.6 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.53 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.47 | |
| KOG3098|consensus | 461 | 95.34 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 94.83 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 94.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.39 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.62 | |
| KOG2325|consensus | 488 | 92.21 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 91.62 | |
| KOG2563|consensus | 480 | 91.12 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 90.41 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 89.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 89.59 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 88.24 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 85.39 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 84.93 | |
| KOG3097|consensus | 390 | 84.33 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 84.17 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 81.22 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 80.64 |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=364.67 Aligned_cols=452 Identities=43% Similarity=0.754 Sum_probs=388.6
Q ss_pred CCCcchhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 156 DDTFTVSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVS 235 (837)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~ls 235 (837)
......++..+..+.++.+|...+....++..+.+.....+-..|.+.+.+|.+..+.++++.....|..+++..||.++
T Consensus 58 ~k~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~ 137 (528)
T KOG0253|consen 58 AKSFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSA 137 (528)
T ss_pred cceeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheeh
Confidence 34455677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q psy1725 236 DRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315 (837)
Q Consensus 236 d~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lg 315 (837)
|++|||+.+....+..++...+.+.++|+..+.+.|.+.|+|.|+.+...++..|.-|...|+..+-+. ..+.+|.++.
T Consensus 138 d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~e 216 (528)
T KOG0253|consen 138 DTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFE 216 (528)
T ss_pred hhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888888899999999999988888 9999999999
Q ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCccccccccccccccccc
Q psy1725 316 VLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEH 395 (837)
Q Consensus 316 p~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (837)
..++.....+.||||.......+..++.+..+++|||||+...+++++++.+.++++++.|+++.+........+
T Consensus 217 a~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~----- 291 (528)
T KOG0253|consen 217 ALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAI----- 291 (528)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehh-----
Confidence 999999999999999998888888888888899999999999999999999999999999998766544332111
Q ss_pred ccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhh
Q psy1725 396 RGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSA 475 (837)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~ 475 (837)
T Consensus 292 -------------------------------------------------------------------------------- 291 (528)
T KOG0253|consen 292 -------------------------------------------------------------------------------- 291 (528)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhH
Q psy1725 476 MARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLL 555 (837)
Q Consensus 476 ~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~ 555 (837)
T Consensus 292 -------------------------------------------------------------------------------- 291 (528)
T KOG0253|consen 292 -------------------------------------------------------------------------------- 291 (528)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhhhhHHHHHHhhh
Q psy1725 556 AFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYV 635 (837)
Q Consensus 556 ~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (837)
.+.||.+.-+.+. ..+..++...+..+++++.++|++++.|.+||
T Consensus 292 -------------------~~~e~e~~~~~~~---------------~~~a~ke~rg~~~nLlsp~lrkttlllw~iwf- 336 (528)
T KOG0253|consen 292 -------------------DRQEQEESDLDDS---------------KSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWF- 336 (528)
T ss_pred -------------------hhhhhhhhchhhh---------------hhccccccccchHhhcChHHHHHHHHHHHHHH-
Confidence 1111111111111 11222345667889999999999999999999
Q ss_pred ccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCC-CccccccccchhhhHHHHHHH
Q psy1725 636 SKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVD-TCTADCRQLNTQDYMDLLWTT 714 (837)
Q Consensus 636 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 714 (837)
.+.+.||+...+...+++..+. |.. .+-+++.. +|+..|..+....|.+.++..
T Consensus 337 ------------------gnafsyyg~VLlttelfqsgd~-c~~------~~r~~p~e~e~~~~c~~s~~~dYrdllits 391 (528)
T KOG0253|consen 337 ------------------GNAFSYYGSVLLTTELFQSGDA-CPL------YNRFLPTELETRANCPLSVAKDYRDLLITS 391 (528)
T ss_pred ------------------hhHHHHHHHHHHHHHHHhccCc-ccc------chhcchhHHHhhhcCCccchhHHHHHHHHH
Confidence 8999999999999888876542 221 11233333 567889999999999999999
Q ss_pred hhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccch
Q psy1725 715 LAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAV 794 (837)
Q Consensus 715 ~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~ 794 (837)
+++++|.+++++++||+|||+.|...+++++++.+.+..+. +....++..+...+|+.+.+.+.|+|+.|+||+..|++
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 99999999999999999999999999999999999988887 55667777888999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHHHHhhc
Q psy1725 795 GVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAALK 835 (837)
Q Consensus 795 ~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (837)
|.|.+..++++|++++|.++ ...+.+.+.+..+|+++++.
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~il 510 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFIL 510 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHH
Confidence 99999999999999999999 56666888888888877653
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=407.23 Aligned_cols=464 Identities=24% Similarity=0.412 Sum_probs=351.0
Q ss_pred hhhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q psy1725 161 VSQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR 240 (837)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR 240 (837)
.++..++..+++.+|.++++++++.+..+++...++..+|.+.++++++..+.+++.+++++|.++|++++|+++||+||
T Consensus 152 ~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GR 231 (742)
T TIGR01299 152 YELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGR 231 (742)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44556667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 241 KQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 241 r~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
|+++++++++++++.++++++++++.++++|++.|++.|+. +....+++|++|+++||..++++.++..+|.+++++++
T Consensus 232 R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 88888999999999999999999999999999999988
Q ss_pred HHHhcc-------------cChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccccc
Q psy1725 320 LIVMPT-------------LGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLV 386 (837)
Q Consensus 320 ~~l~~~-------------~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 386 (837)
+.+... .+||+.+++.+++.++.+++.+++||||+|+..+++.+++.+.++++.+.+++......
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~-- 389 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE-- 389 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh--
Confidence 776532 36999999999888888888888999999999999999999999999876643210000
Q ss_pred cccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccc
Q psy1725 387 VDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLR 466 (837)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~ 466 (837)
+.+..
T Consensus 390 --------------~~~~~------------------------------------------------------------- 394 (742)
T TIGR01299 390 --------------KVFSV------------------------------------------------------------- 394 (742)
T ss_pred --------------HHHHH-------------------------------------------------------------
Confidence 00000
Q ss_pred cchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH
Q psy1725 467 AVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWL 546 (837)
Q Consensus 467 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~ 546 (837)
T Consensus 395 -------------------------------------------------------------------------------- 394 (742)
T TIGR01299 395 -------------------------------------------------------------------------------- 394 (742)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcC-Ccccccccc----cccccccccchhhhhhhhhh
Q psy1725 547 LALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNG-KPMLLGRLV----VDDSMVGEHRGRVKDLLSVQ 621 (837)
Q Consensus 547 ~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 621 (837)
+..+..++.++..+ .+....... ............++++++++
T Consensus 395 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~ 442 (742)
T TIGR01299 395 --------------------------------NHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE 442 (742)
T ss_pred --------------------------------HHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc
Confidence 00000000000000 000000000 00000001123577888999
Q ss_pred hhhhhHHHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccc----------------------cCC
Q psy1725 622 LRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTR----------------------CSE 679 (837)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 679 (837)
.++++++.+.+|| ...+.||++.+|+|.++++.+.. ..
T Consensus 443 ~~~~tl~l~~~wf-------------------~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 502 (742)
T TIGR01299 443 VREITIKLMGVWF-------------------TLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLE- 502 (742)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchh-
Confidence 9999999999999 88899999999999987552000 00
Q ss_pred Ccccccc--------CC------------------------------------ccCCC-------Cc----------ccc
Q psy1725 680 SPIAAAS--------GM------------------------------------FKPVD-------TC----------TAD 698 (837)
Q Consensus 680 ~~~~~~~--------~~------------------------------------~~~~~-------~~----------~~~ 698 (837)
+++-.+. |+ +.+.| +| .++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (742)
T TIGR01299 503 NQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEG 582 (742)
T ss_pred hhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCc
Confidence 0000000 00 00000 00 123
Q ss_pred ccc-------cchhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy1725 699 CRQ-------LNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGI 771 (837)
Q Consensus 699 ~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (837)
|.. .....+....+.+++.++|.+++++++||+|||+++++++++.+++++++.+... ...+++..++..++
T Consensus 583 c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s-~~~ll~~~~l~g~~ 661 (742)
T TIGR01299 583 CPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS-ESAMIALLCLFGGL 661 (742)
T ss_pred cCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHH
Confidence 432 1234577778888999999999999999999999999999999999888776543 33344444455566
Q ss_pred HhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHHHHhh
Q psy1725 772 IAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834 (837)
Q Consensus 772 ~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (837)
..+.++..+.+++|++|++.|++++|+++..+++|++++|++.+.+.+.....++++++++.+
T Consensus 662 ~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~ll 724 (742)
T TIGR01299 662 SIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999998887766677777665543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=348.04 Aligned_cols=443 Identities=18% Similarity=0.292 Sum_probs=290.3
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC
Q psy1725 166 NAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDW-----QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR 240 (837)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~-----~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR 240 (837)
++.+.++.++.++.+++++.+.+++|...++...+.+.+++ +.+..+.+++.+.+.+|..++++++|+++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr 85 (502)
T TIGR00887 6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR 85 (502)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567788888999999999999999999999999887753 3456678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q psy1725 241 KQALTLCAVLLFYYGILSSLAPS------YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGAC 313 (837)
Q Consensus 241 r~vl~~~~~l~~i~~i~~a~a~n------~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~ 313 (837)
|+++.++.+++.++.++++++++ ++.++++|++.|++.|.. +....+++|++|+++||+++++.+.+..+|.+
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~ 165 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 789999999999999998 88888889999999999999999999999999
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCccccccccccccccc
Q psy1725 314 FEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVG 393 (837)
Q Consensus 314 lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 393 (837)
+++.++..+..... ...+.+.+. . ... . +..
T Consensus 166 ~g~~~~~~~~~~~~--------------------~~~~~~~~~----~-~~~----~---~~~----------------- 196 (502)
T TIGR00887 166 AGAIVALIVLAGFK--------------------HSLEAAADE----A-SCT----G---SCV----------------- 196 (502)
T ss_pred HHHHHHHHHHHHhc--------------------ccccccccc----c-ccc----c---ccc-----------------
Confidence 99988876532000 000000000 0 000 0 000
Q ss_pred ccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhh
Q psy1725 394 EHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTC 473 (837)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~ 473 (837)
T Consensus 197 -------------------------------------------------------------------------------- 196 (502)
T TIGR00887 197 -------------------------------------------------------------------------------- 196 (502)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhh
Q psy1725 474 SAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 553 (837)
Q Consensus 474 ~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~ 553 (837)
....++||+++.+..++
T Consensus 197 ---------------------------------------------------------------~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 197 ---------------------------------------------------------------PAVDYMWRILIGFGAVP 213 (502)
T ss_pred ---------------------------------------------------------------chhcccHHHHHHHHHHH
Confidence 00012344444444444
Q ss_pred hHHHHhhhccccCCcchhhhcCCHH-HHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhh----hhhHH
Q psy1725 554 LLAFACICPWLPESARYHVASGQPE-KALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLR----TTSLL 628 (837)
Q Consensus 554 ~~~~~~~~~~~~esp~~l~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 628 (837)
+++.++..+++||||||+..|+|++ ++.+.+++.++.+..++ .++.++.++.+++.+.+++++++.... +..+.
T Consensus 214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (502)
T TIGR00887 214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG 292 (502)
T ss_pred HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence 4444444444455555555444442 23343443332211100 000000000001112357777753221 22232
Q ss_pred HHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhH
Q psy1725 629 LWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYM 708 (837)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (837)
.+..++ ...+.+|++..|.|.++++.|.+...+.. .| ....-.....
T Consensus 293 ~~~~~~-------------------~~~~~~y~~~~~~p~i~~~~G~~~~~~~~-----------~~---~~~~~~~~~~ 339 (502)
T TIGR00887 293 TAGSWF-------------------LLDIAFYGVNLNQKVILSAIGYSPPAATN-----------NA---YEELYKTAVG 339 (502)
T ss_pred HHHHHH-------------------HHHHHHHccccccHHHHHHHcCCCCccch-----------hH---HHHHHHHHHH
Confidence 333344 33456778888899998877753221100 00 0000001112
Q ss_pred HHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy1725 709 DLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQS---RAYLTVTLFVARGIIAGVFQAAYVYTPE 785 (837)
Q Consensus 709 ~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E 785 (837)
......++.+++.+++++++||+|||++++++..++++++.++.+.... ........++..++..+..++.+.+++|
T Consensus 340 ~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 419 (502)
T TIGR00887 340 NLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGE 419 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhc
Confidence 3344456778899999999999999999999988888877766654321 1112222222223345677889999999
Q ss_pred cCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcc-----------hhhHHHHHHHHhh
Q psy1725 786 VYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSS-----------LSIAMTVYGVAAL 834 (837)
Q Consensus 786 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 834 (837)
++|++.|+++.|+++.+++++++++|++++++.+.+ ....+++++++++
T Consensus 420 ~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 479 (502)
T TIGR00887 420 VFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMF 479 (502)
T ss_pred cCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999988742 2346677766554
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=326.90 Aligned_cols=409 Identities=19% Similarity=0.295 Sum_probs=315.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhC--CChh----HHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALH--------CDWQ--ITRY----QQALTTTIVFLGMMLSSTFWGYVS 235 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~--------~~~~--~s~~----~~~~i~s~~~lg~~vg~li~g~ls 235 (837)
++++-......++++.+-.+|....+++..+.+. +.+| .+++ ..+.++++|.+|.++|+++.++++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666888888877777655333 3455 3333 356788999999999999999999
Q ss_pred hhhCChHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHH
Q psy1725 236 DRYGRKQALTLCAVLLFYYGILSSLA---PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALG 311 (837)
Q Consensus 236 d~~GRr~vl~~~~~l~~i~~i~~a~a---~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG 311 (837)
|++|||..++++.++..++.++..++ +++.+++++|++.|+..|.. .....++.|..|.+.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999999988887776655 68999999999999999998 666677799999999999999999999999
Q ss_pred HHHHHHHHH--HHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhcc-CCChHHHHHHHHHHHhccCCcccccccccc
Q psy1725 312 ACFEVLLAL--IVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVA-SGQPEKALATLREIAADNGKPMLLGRLVVD 388 (837)
Q Consensus 312 ~~lgp~l~~--~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 388 (837)
.++|..++. .+.+...|++.+.+.++++++.++.++++||||||+.. +++.++|++.+++.+..++++.
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~-------- 236 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA-------- 236 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh--------
Confidence 999988773 44566779999999999999999999999988887766 5666666666666655433210
Q ss_pred cccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccc
Q psy1725 389 DSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAV 468 (837)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~ 468 (837)
T Consensus 237 -------------------------------------------------------------------------------- 236 (485)
T KOG0569|consen 237 -------------------------------------------------------------------------------- 236 (485)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Q psy1725 469 GVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLA 548 (837)
Q Consensus 469 ~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~ 548 (837)
T Consensus 237 -------------------------------------------------------------------------------- 236 (485)
T KOG0569|consen 237 -------------------------------------------------------------------------------- 236 (485)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhh-hhhhhhH
Q psy1725 549 LSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSV-QLRTTSL 627 (837)
Q Consensus 549 ~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 627 (837)
+.++..++++ +++..+++..+++++++. ..|+...
T Consensus 237 ------------------------------~~e~~~~e~~--------------~~~~~~~~~~sl~~~~~~~~lR~~~~ 272 (485)
T KOG0569|consen 237 ------------------------------EIEEMLREIE--------------EEELEKKKQISLRQLLKNPTLRRPLL 272 (485)
T ss_pred ------------------------------HHHHHHHHHH--------------HhccccccCCcHHHHhcCcchhHHHH
Confidence 0001111111 111222356678888864 5555555
Q ss_pred HHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhh
Q psy1725 628 LLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDY 707 (837)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (837)
+.+.+.+ ++|++|.+...+|+..+ +++.|. ...++.
T Consensus 273 i~~~v~~-------------~qq~sGi~ai~~Yst~i-----~~~aG~--------------------------~~~~a~ 308 (485)
T KOG0569|consen 273 IGIVVSF-------------AQQFSGINAIFFYSTSI-----FKTAGF--------------------------TPEEAQ 308 (485)
T ss_pred HHHHHHH-------------HHHhcCcceeHHHHHHH-----HHHcCC--------------------------CHHHHH
Confidence 5555555 89999999988886544 455554 345567
Q ss_pred HHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH--hh-h------hHHHHHHHHHHHHHhhhhhh
Q psy1725 708 MDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICT--QS-R------AYLTVTLFVARGIIAGVFQA 778 (837)
Q Consensus 708 ~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--~~-~------~~~~~~~~~~~~~~~~~~~~ 778 (837)
+.+...++.+++.++++.+++||+|||++++.++.++.++.+++.+.. .+ . ..+.+.+.+...+..|.+|+
T Consensus 309 ~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi 388 (485)
T KOG0569|consen 309 YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPI 388 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCch
Confidence 888999999999999999999999999999999999999888775554 11 1 12344555666677799999
Q ss_pred hhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHHHHhh
Q psy1725 779 AYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834 (837)
Q Consensus 779 ~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (837)
.|.+.+|++|+..|+.+.++..+.+|+.+++..+.++.+.+.-+.+.|.+|.+.++
T Consensus 389 ~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~ 444 (485)
T KOG0569|consen 389 PWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLA 444 (485)
T ss_pred hHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999866678887777654
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.03 Aligned_cols=406 Identities=20% Similarity=0.307 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhC-----CCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHH
Q psy1725 174 QAKLSLYTGLCWMADSME--MTILSILSPALHCDWQ-----ITR--YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQAL 244 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~--~~~~~~~l~~i~~~~~-----~s~--~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl 244 (837)
.........+..+..+++ ....++....+.++.. .+. .+.+|+.+++.+|..+|++++|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445566666777777775 5566666777766432 122 3458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 245 TLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 245 ~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
+++.+++.++++++++|+|+.+++++|+++|+|.|.. ..+..+++|+.|++.||...++.+....+|..++.+++....
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999 566666799999999999999999999999999977777665
Q ss_pred cc-cChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccccccccccccccccchHHH
Q psy1725 324 PT-LGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDL 402 (837)
Q Consensus 324 ~~-~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (837)
+. .+||..+++..+++++..+..+++||+|+|+..+++.+++++.++++...+..+
T Consensus 203 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~----------------------- 259 (513)
T KOG0254|consen 203 KVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED----------------------- 259 (513)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc-----------------------
Confidence 43 589999999999988888887789999999988888888888888876632110
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhh
Q psy1725 403 LSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAM 482 (837)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~ 482 (837)
T Consensus 260 -------------------------------------------------------------------------------- 259 (513)
T KOG0254|consen 260 -------------------------------------------------------------------------------- 259 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhc
Q psy1725 483 ITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 562 (837)
Q Consensus 483 ~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~ 562 (837)
T Consensus 260 -------------------------------------------------------------------------------- 259 (513)
T KOG0254|consen 260 -------------------------------------------------------------------------------- 259 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhhhhHHHHHHhhhccCCCcc
Q psy1725 563 WLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSR 642 (837)
Q Consensus 563 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (837)
.++..+.++.... .+....+.+..+++++++..+++..+.+.+..
T Consensus 260 --------------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~-------- 304 (513)
T KOG0254|consen 260 --------------VEVELELLKIKLL-------------VEAEVAEGKASWGELFSPKVRKRLIIGLLLQL-------- 304 (513)
T ss_pred --------------hHHHHHHHHHHHH-------------HhhhcccccccHHHhcCcchHHHHHHHHHHHH--------
Confidence 0000000000000 00000111114666776666777776776666
Q ss_pred hhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHH
Q psy1725 643 INKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIF 722 (837)
Q Consensus 643 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 722 (837)
++|++|.+...||...+ ++..+.. .+.....++.++.++++.+
T Consensus 305 -----fqq~tG~~~~~~Y~~~i-----f~~~g~~---------------------------~~~~~~~~~~~~v~~~~t~ 347 (513)
T KOG0254|consen 305 -----FQQLTGINYVFYYSTTI-----FKSAGLK---------------------------SDTFLASIILGVVNFLGTL 347 (513)
T ss_pred -----HHHHhCCceEEeehHHH-----HHhcCCC---------------------------CchHHHHHHHHHHHHHHHH
Confidence 89999999999996444 5555531 1116777888999999999
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhh------------hhHHHHHHHHHHHHHhhhhhhhhhhccccCCCC
Q psy1725 723 ATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQS------------RAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP 790 (837)
Q Consensus 723 ~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~ 790 (837)
++.+++||+|||++++.+...+.+++++++..... ...+...+++...+..+..++.|.+.+|+||.+
T Consensus 348 ~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~ 427 (513)
T KOG0254|consen 348 VATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR 427 (513)
T ss_pred HHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh
Confidence 99999999999999999999999999988766521 233455666677788899999999999999999
Q ss_pred ccchhhHHHHHHHhhhcchhHHHHHHHhhcch-hhHHHHHHHHhh
Q psy1725 791 LRAVGVGTCSAMARLGAMITPYIAQVLLKSSL-SIAMTVYGVAAL 834 (837)
Q Consensus 791 ~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~ 834 (837)
.|+++.+++..++|+.+++....++.+.+... ...+.+|++.+.
T Consensus 428 ~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 428 LRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL 472 (513)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999988887754 666666666554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=334.98 Aligned_cols=370 Identities=34% Similarity=0.628 Sum_probs=290.8
Q ss_pred HHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy1725 197 ILSPALHCDWQIT---RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGL 273 (837)
Q Consensus 197 ~~l~~i~~~~~~s---~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l 273 (837)
...+.+.+|||++ ..+.++..+++.+|..++++++|+++||+|||++++++.++.+++.+++++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567889999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCC
Q psy1725 274 VGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPES 352 (837)
Q Consensus 274 ~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pes 352 (837)
.|++.++. +....++.|++|+++|+.+.++...+..+|.++++++++.+. +||+.|++.+++.++..+..+++||+
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999997 888889999999999999999999999999999999988774 49999999998887777777889999
Q ss_pred cchhccCCChHHHHHHHHHHHhccCCcccccccccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHH
Q psy1725 353 ARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTR 432 (837)
Q Consensus 353 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (837)
|+|+..+++.+++.+.+++..+.++.....
T Consensus 267 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~-------------------------------------------------- 296 (505)
T TIGR00898 267 PRWLISQGRIEEALKILQRIAKINGKKLPA-------------------------------------------------- 296 (505)
T ss_pred hHHHHHCCCHHHHHHHHHHHHHHcCCCCCH--------------------------------------------------
Confidence 999999999999988888887765432100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHH
Q psy1725 433 AYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYT 512 (837)
Q Consensus 433 ~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~ 512 (837)
T Consensus 297 -------------------------------------------------------------------------------- 296 (505)
T TIGR00898 297 -------------------------------------------------------------------------------- 296 (505)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcC
Q psy1725 513 WMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNG 592 (837)
Q Consensus 513 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~ 592 (837)
+..+. +.++
T Consensus 297 ------------------------------------------------------------------~~~~~--~~~~--- 305 (505)
T TIGR00898 297 ------------------------------------------------------------------EVLSL--SLEK--- 305 (505)
T ss_pred ------------------------------------------------------------------HHHhh--hhhh---
Confidence 00000 0000
Q ss_pred Ccccccccccccccccccchhhhhhhhh-hhhhhhHHHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhh
Q psy1725 593 KPMLLGRLVVDDSMVGEHRGRVKDLLSV-QLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFE 671 (837)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 671 (837)
+. ..++++..++++++. ..++..+..+..++ ...+.+|+...+.+.+
T Consensus 306 ----------~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~-- 353 (505)
T TIGR00898 306 ----------DL-SSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-------------------TTAFSYYGLVLDLGNL-- 353 (505)
T ss_pred ----------hh-hhccCCCcHHHHhCChHHHHHHHHHHHHHH-------------------HHHHHHHHHhcccccc--
Confidence 00 000112356677753 33344444445555 3444455555444422
Q ss_pred ccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q psy1725 672 ASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFL 751 (837)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~ 751 (837)
..+.+...++.++.++++.+++++++||+|||+.+.+++++++++++++
T Consensus 354 -------------------------------~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~ 402 (505)
T TIGR00898 354 -------------------------------GGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLL 402 (505)
T ss_pred -------------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2234667778889999999999999999999999999999988888777
Q ss_pred HHHHhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHH
Q psy1725 752 FICTQSR-AYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYG 830 (837)
Q Consensus 752 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 830 (837)
.+..... .......++..++..+.++..+.+..|++|++.|++++|+.+.++++|++++|++.+ +.+.+...++++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~ 481 (505)
T TIGR00898 403 LFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFG 481 (505)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHH
Confidence 6655332 233344445555666778899999999999999999999999999999999999999 66666677777777
Q ss_pred HHhh
Q psy1725 831 VAAL 834 (837)
Q Consensus 831 ~~~~ 834 (837)
+..+
T Consensus 482 ~~~~ 485 (505)
T TIGR00898 482 GLAL 485 (505)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=314.75 Aligned_cols=203 Identities=22% Similarity=0.373 Sum_probs=176.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDW--------QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK 241 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~--------~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr 241 (837)
+.+..+.++.++.++.+..+++.+.+++..+.++++| +++..+.+++.+++.+|..++++++|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4455677788888899999999999999999999988 88889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc------------ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHH
Q psy1725 242 QALTLCAVLLFYYGILSSLA------------PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFW 308 (837)
Q Consensus 242 ~vl~~~~~l~~i~~i~~a~a------------~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~ 308 (837)
++++++.++++++.++++++ +++..++++|+++|++.|+. +...++++|++|+++||+++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999999988874 23567889999999999998 888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--------cccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHH
Q psy1725 309 ALGACFEVLLALIVM--------PTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREI 372 (837)
Q Consensus 309 ~lG~~lgp~l~~~l~--------~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~ 372 (837)
.+|.++++++++.+. +..+|||.|++.+++.++..+..+++||+|+++..+++.+++++.+++.
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~ 237 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKI 237 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHH
Confidence 999999998887654 3568999999988877777776777999998877777766665555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=311.64 Aligned_cols=183 Identities=16% Similarity=0.255 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
|.+|.++.++++.++++++|..+++...|.+++|+|++..+.+++.+++.+++++++++.|+++||+|||+++..+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc------
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP------ 324 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~------ 324 (837)
+++.+++++++|++++++.|++.|++.++. +....++.|++|+++|++++++++.+..+|.++++++++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999988 7777788999999999999999999999999999999998863
Q ss_pred ccChHHHHHHHHHHHHHHHH-HHhhccCCcc
Q psy1725 325 TLGWKWLLALSTAPLLAFAC-ICPWLPESAR 354 (837)
Q Consensus 325 ~~gWr~~f~i~~i~~~~~~~-~~~~~pesp~ 354 (837)
..|||+.|++.++++++..+ ..+++||+|+
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 36999999998877665544 4456899874
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=304.93 Aligned_cols=181 Identities=19% Similarity=0.265 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHH
Q psy1725 175 AKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQ-QAL-----TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248 (837)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~-~~~-----i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~ 248 (837)
+..+..++++++++++|...++...|.+.++|+.+... .++ +.++.++++.+|++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34566778899999999999999999999999643321 222 247788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHH--------HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 249 VLLFYYGILSSLAPSYTW--------MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 249 ~l~~i~~i~~a~a~n~~~--------l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
++++++++++++++|+++ ++++|+++|++.|+. +.+..+++|++|+++||++.++...+..+|.++|++++
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999975 889999999999998 88888889999999999999999988888988888776
Q ss_pred HHHh--------cccChHHHHHHHHHHHHHHHHHHhhccCCcch
Q psy1725 320 LIVM--------PTLGWKWLLALSTAPLLAFACICPWLPESARY 355 (837)
Q Consensus 320 ~~l~--------~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~ 355 (837)
..+. ..+|||+.|++.++++++.+++..++||+|++
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~ 218 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAF 218 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhH
Confidence 5543 25799999999877666555555568888764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=300.32 Aligned_cols=196 Identities=26% Similarity=0.349 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQIT--------RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT 245 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s--------~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~ 245 (837)
.+...+++.++.++..++...++...+.+.++++.+ ..+.+++.+++.++..++++++|+++||+|||++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 105 (481)
T TIGR00879 26 VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105 (481)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHH
Confidence 444456666777888999999999999999998877 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--
Q psy1725 246 LCAVLLFYYGILSSLAP---SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA-- 319 (837)
Q Consensus 246 ~~~~l~~i~~i~~a~a~---n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~-- 319 (837)
++.+++.++.++++++. +++.++++|++.|++.+.. +....++.|++|+++|++++++.+.+..+|.+++++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996654 4558999999999999998 77888889999999999999999999999999999999
Q ss_pred -HHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHH
Q psy1725 320 -LIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATL 369 (837)
Q Consensus 320 -~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l 369 (837)
....+..+||+.|++.++..++.++..+++||+|++...+++.+++.+.+
T Consensus 186 ~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (481)
T TIGR00879 186 KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL 236 (481)
T ss_pred hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH
Confidence 66667789999999977777777777778999988766665555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=292.44 Aligned_cols=184 Identities=19% Similarity=0.343 Sum_probs=168.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++++|.++.++++..++++++....+...|.+.+++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Q psy1725 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329 (837)
Q Consensus 251 ~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr 329 (837)
..++.+++++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++++++.+.+..+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 9999999999999999999999999999888 788888999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHH-HHHhhccCCcc
Q psy1725 330 WLLALSTAPLLAFA-CICPWLPESAR 354 (837)
Q Consensus 330 ~~f~i~~i~~~~~~-~~~~~~pesp~ 354 (837)
+.|++.++..++.. +...++||+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRA 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 99999876544444 34455888764
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-30 Score=288.67 Aligned_cols=184 Identities=22% Similarity=0.364 Sum_probs=169.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++++|..+..++++++..+++....++..|.+++++|++..+.+++.+++.++..+++++.|+++||+|||++++.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--
Q psy1725 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-- 327 (837)
Q Consensus 251 ~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-- 327 (837)
.+++.++++++++++.+++.|++.|++.+.. +...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999888 8888888999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcc
Q psy1725 328 WKWLLALSTAPLLAFACICPWLPESAR 354 (837)
Q Consensus 328 Wr~~f~i~~i~~~~~~~~~~~~pesp~ 354 (837)
||+.|++.++..++.++....+||+++
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 193 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAED 193 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 999999887766666666666888764
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-31 Score=306.43 Aligned_cols=355 Identities=26% Similarity=0.447 Sum_probs=287.3
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-
Q psy1725 203 HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV- 281 (837)
Q Consensus 203 ~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~- 281 (837)
.+.++.+.....+..++|++|..+|++++|+++|++|||+++++++++..++.+++++++|++.++++||++|++.++.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence 4556678889999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCC
Q psy1725 282 PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQ 361 (837)
Q Consensus 282 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~ 361 (837)
.++..+++|++++++|+.++.+ ......|+.+++++++++.. +|||.+|+..+++++.++.+++.||+|+|+..+++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~ 266 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR 266 (521)
T ss_pred HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc
Confidence 8888889999999999999999 77777788888888888876 89999999999888887777777799999999999
Q ss_pred hHHHHHHHHHHHhccCCcccccccccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q psy1725 362 PEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFV 441 (837)
Q Consensus 362 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l 441 (837)
.+++.+.+++.++.|++.....+
T Consensus 267 ~~~a~~~l~~~a~~n~~~~~~~~--------------------------------------------------------- 289 (521)
T KOG0255|consen 267 IDEAIKILKKIAKLNGRKLSVKE--------------------------------------------------------- 289 (521)
T ss_pred hHHHHHHHHHHHhhcCCCCCcHH---------------------------------------------------------
Confidence 99999999988877632211000
Q ss_pred HHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHH
Q psy1725 442 ARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLC 521 (837)
Q Consensus 442 ~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~ 521 (837)
T Consensus 290 -------------------------------------------------------------------------------- 289 (521)
T KOG0255|consen 290 -------------------------------------------------------------------------------- 289 (521)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccc
Q psy1725 522 FWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLV 601 (837)
Q Consensus 522 ~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 601 (837)
+..+.. ..+
T Consensus 290 ---------------------------------------------------------~~~~~~-~~~------------- 298 (521)
T KOG0255|consen 290 ---------------------------------------------------------LLRLEL-LLR------------- 298 (521)
T ss_pred ---------------------------------------------------------HHHHHH-Hhh-------------
Confidence 000000 000
Q ss_pred cccccccccchhhhhhhhhh-hhhhhHHHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCC
Q psy1725 602 VDDSMVGEHRGRVKDLLSVQ-LRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSES 680 (837)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (837)
+++....+++..+.++++.+ .+++....++.|+ ...+.||+.......
T Consensus 299 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-------------------~~~~~y~gl~~~~~~------------ 347 (521)
T KOG0255|consen 299 PLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-------------------VFSLVYYGLSLNVSG------------ 347 (521)
T ss_pred HhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-------------------HHhHHHHhhhhhhhh------------
Confidence 01111112334577777544 7777888888887 677777776554432
Q ss_pred ccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhh-
Q psy1725 681 PIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRA- 759 (837)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~- 759 (837)
...+.+.+..+.+..+.++....+.+.|++|||..+..+..+.++++++.++......
T Consensus 348 ---------------------lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (521)
T KOG0255|consen 348 ---------------------LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG 406 (521)
T ss_pred ---------------------cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 2456678888888899999999999999999999999999999999999888875443
Q ss_pred -HHHHHHHHHHHHHhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 760 -YLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 760 -~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
.......+..++....+.+.+.++.|++|+..|+.+.+.++..++++++++|++.......
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~ 468 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM 468 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555566666667777777799999999999999999999999999999999999755553
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=290.37 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
+|.++..++++.++...|.++++.++|.+.+|+|.+.++.+|+.+.|.++++++.+++|+++||+|||++++.+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHH
Q psy1725 254 YGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWL 331 (837)
Q Consensus 254 ~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~ 331 (837)
++++|++++|++.++++|+++|+|.+.. +.....+.+.+ |+++|+++++++.....+|.++||++++.+.++.+|||.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999888 76777775654 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHhhccCCc
Q psy1725 332 LALSTAPLLAFAC-ICPWLPESA 353 (837)
Q Consensus 332 f~i~~i~~~~~~~-~~~~~pesp 353 (837)
|++.....++.++ ..+++||++
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 9998865555444 444577754
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=288.19 Aligned_cols=181 Identities=20% Similarity=0.299 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
+.++.....+.++++.++++.....+..|.+++++|+++.+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
+++.++++++++++.++++|+++|++.+.. +....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+||+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~ 173 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRA 173 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHH
Confidence 999999999999999999999999999887 7788888999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q psy1725 331 LLALSTAPLLAFACICPWLPES 352 (837)
Q Consensus 331 ~f~i~~i~~~~~~~~~~~~pes 352 (837)
.|++.++..++.+......||+
T Consensus 174 ~f~i~~~~~~~~~~~~~~~p~~ 195 (426)
T PRK12307 174 AFFVGLLPVLLVIYIRARAPES 195 (426)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
Confidence 9998665444333332234554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=284.86 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CChhHHHHHHHHHHH---HHHHHHHHHHHHhhhhCChHHHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQ---ITRYQQALTTTIVFL---GMMLSSTFWGYVSDRYGRKQALTL 246 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~---~s~~~~~~i~s~~~l---g~~vg~li~g~lsd~~GRr~vl~~ 246 (837)
+++..+..++++++++++|...++...|.+.++++ .+..+.++..+++.+ +..+|++++|+++||+|||+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 35556777788999999999999999999999985 455555555555544 444999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccHH--------HHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Q psy1725 247 CAVLLFYYGILSSLAPSYT--------WMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVL 317 (837)
Q Consensus 247 ~~~l~~i~~i~~a~a~n~~--------~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~ 317 (837)
+.++++++++++++++|+. .++++|+++|++.|+. +...++++|++|+++||++.++...+...|.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 5889999999999988 888889999999999999999999998899888887
Q ss_pred HHHHHh--------cccChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 318 LALIVM--------PTLGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 318 l~~~l~--------~~~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
++..+. ...|||++|++.++++++.+++...+||+|
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 766553 257999999998887766655444566664
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-29 Score=276.30 Aligned_cols=165 Identities=15% Similarity=0.071 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy1725 190 MEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLF 269 (837)
Q Consensus 190 ~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i 269 (837)
..-..+++.+|.+++|||++..+.+++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+....++|++.+++
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA 84 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999877666655555443444489999999
Q ss_pred HHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH-HHhh
Q psy1725 270 LRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC-ICPW 348 (837)
Q Consensus 270 ~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~-~~~~ 348 (837)
+|+++|++.+...+....++|++|+++|++++++...+..+|.++++++++.+.+..|||+.|++.++++++..+ ..++
T Consensus 85 ~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 85 CQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876666666799999999999999999999999999999999999999999999997776555444 4456
Q ss_pred ccCCcc
Q psy1725 349 LPESAR 354 (837)
Q Consensus 349 ~pesp~ 354 (837)
+||+|+
T Consensus 165 lp~~p~ 170 (368)
T TIGR00903 165 LPALPF 170 (368)
T ss_pred cCCCCC
Confidence 898875
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=293.82 Aligned_cols=193 Identities=15% Similarity=0.080 Sum_probs=165.6
Q ss_pred hhhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh
Q psy1725 162 SQAVNAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK 241 (837)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr 241 (837)
++++.+..+.+..+.++..+++++++.+.++.+++...|.+.+|+|++..+.+++.++|.+++++++++.|+++||+|||
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 94 (467)
T PRK09556 15 PLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK 94 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc
Confidence 34444445666678888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q psy1725 242 QALTLCAVLLFYYGILSSL-----APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315 (837)
Q Consensus 242 ~vl~~~~~l~~i~~i~~a~-----a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lg 315 (837)
+++.++.+++++..++.++ ++|++.++++|+++|++.+.. +....+++|++|+++||++++++..+..+|.+++
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~ 174 (467)
T PRK09556 95 QFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGA 174 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHH
Confidence 9999888888877766655 689999999999999999887 8888888999999999999999999999999999
Q ss_pred HHHHHHHhccc---ChHHHHHHHHHHHHHHHHHHh-hccCCcc
Q psy1725 316 VLLALIVMPTL---GWKWLLALSTAPLLAFACICP-WLPESAR 354 (837)
Q Consensus 316 p~l~~~l~~~~---gWr~~f~i~~i~~~~~~~~~~-~~pesp~ 354 (837)
++++..+.+.. +||+.|.+.++.+++..++.+ +.+++|.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 175 GGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred HHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 99987665542 699999888776665544444 4566653
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-29 Score=278.03 Aligned_cols=186 Identities=27% Similarity=0.520 Sum_probs=166.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++++|..+..+.+..+..+++....+...|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 34566677777788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Q psy1725 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329 (837)
Q Consensus 251 ~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr 329 (837)
.+++.+++++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~ 171 (398)
T TIGR00895 92 FSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR 171 (398)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccce
Confidence 9999999999999999999999999999888 888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHhhccCCcchh
Q psy1725 330 WLLALSTAP-LLAFACICPWLPESARYH 356 (837)
Q Consensus 330 ~~f~i~~i~-~~~~~~~~~~~pesp~~l 356 (837)
+.|++.++. .+...+...++||++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (398)
T TIGR00895 172 SLFYVGGIAPLLLLLLLMRFLPESIDFL 199 (398)
T ss_pred eehhhhhhHHHHHHHHHHHhCCCCChHH
Confidence 999998644 444445556688887543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-35 Score=336.64 Aligned_cols=393 Identities=25% Similarity=0.441 Sum_probs=281.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhCCC---------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHH
Q psy1725 181 TGLCWMADSMEMTILSILSPALH--CDWQIT---------RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAV 249 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~--~~~~~s---------~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~ 249 (837)
..++.+..++|...++...+... .++..+ ..+.++..+.+.+|..+|++++|.++||+|||++++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 45566889999988877766555 222222 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 250 LLFYYGILSSLAP---SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 250 l~~i~~i~~a~a~---n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
+..++++++++++ |++.+.++|++.|++.|+. .....++.|..|++.|++..++.+.+..+|.+++.+++..+...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999998 77888889999999999999999999999999888777655332
Q ss_pred c---ChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccccccccccccccccchHHH
Q psy1725 326 L---GWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDL 402 (837)
Q Consensus 326 ~---gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (837)
. +||+.+++.++++++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~------------------------------------------------------------- 183 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLL------------------------------------------------------------- 183 (451)
T ss_pred ccccccccccccccccccc-------------------------------------------------------------
Confidence 2 255555555544444
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhh
Q psy1725 403 LSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAM 482 (837)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~ 482 (837)
T Consensus 184 -------------------------------------------------------------------------------- 183 (451)
T PF00083_consen 184 -------------------------------------------------------------------------------- 183 (451)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhc
Q psy1725 483 ITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 562 (837)
Q Consensus 483 ~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~ 562 (837)
..+..+
T Consensus 184 --------------------------------------------------------------------------~~~~~~ 189 (451)
T PF00083_consen 184 --------------------------------------------------------------------------VLLLRF 189 (451)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 334444
Q ss_pred cccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhh-hhhhHHHHHHhhhccCCCc
Q psy1725 563 WLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQL-RTTSLLLWYIWYVSKSYPS 641 (837)
Q Consensus 563 ~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 641 (837)
++||||||+.+|+|.+||++.++++++.+..+++.++..++.+..++++.+++++++.+. +++....+.+..
T Consensus 190 ~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------- 262 (451)
T PF00083_consen 190 FLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQF------- 262 (451)
T ss_pred ccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccc-------
Confidence 555666666666666666666666544332222211111111111122256777775433 455554444444
Q ss_pred chhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhH
Q psy1725 642 RINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGI 721 (837)
Q Consensus 642 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 721 (837)
+++++|.+.+.+| .+.+++..+.+ +.+....+.++..+++.
T Consensus 263 ------~~~~~g~~~~~~~-----~~~i~~~~~~~----------------------------~~~~~~~~~~~~~~~~~ 303 (451)
T PF00083_consen 263 ------FQQFSGINFIFYY-----SPSIFENAGIS----------------------------NSFLATLILGLVNFLGT 303 (451)
T ss_pred ------ccccccccccccc-----ccccccccccc----------------------------ccccccccccccccccc
Confidence 4556666555555 45555554431 11455566778889999
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHH--H-HHhh------hhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCcc
Q psy1725 722 FATIFVIEKFGRKRTMAVQFVIFTACVSFLF--I-CTQS------RAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLR 792 (837)
Q Consensus 722 ~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~--~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r 792 (837)
+++.+++||+|||++++++..+++++++.+. . ...+ ...+.+......++..++.++.+.+++|+||++.|
T Consensus 304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R 383 (451)
T PF00083_consen 304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVR 383 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccc
Confidence 9999999999999999999999988888775 1 1111 11223333344455668899999999999999999
Q ss_pred chhhHHHHHHHhhhcchhHHHHHHHhhcch-hhHHHHHHHHhh
Q psy1725 793 AVGVGTCSAMARLGAMITPYIAQVLLKSSL-SIAMTVYGVAAL 834 (837)
Q Consensus 793 ~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~~~~~~~ 834 (837)
+++.|++..++++++++++.+.+.+.+... ...+++++++++
T Consensus 384 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 426 (451)
T PF00083_consen 384 STGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCL 426 (451)
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence 999999999999999999999998887743 666666665443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=282.41 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=165.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
++++.+.....+.+++..++...++..+|.+.+++|++..+.+++.+.+.+++++++++.|+++||+|||+++.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 45666777777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
+++.+++++++|++.+++.|++.|++.|.. +....++.|++|+++|++++++++.+..+|.+++|++++.+.+..+||+
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~ 178 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRY 178 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 999999999999999999999999998887 7788888999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHH-HHHhhccCCcc
Q psy1725 331 LLALSTAPLLAFA-CICPWLPESAR 354 (837)
Q Consensus 331 ~f~i~~i~~~~~~-~~~~~~pesp~ 354 (837)
.|++.++..++.. +..+++||+|+
T Consensus 179 ~f~~~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 179 GMMIAGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHh
Confidence 9999887655443 34455788764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-28 Score=261.57 Aligned_cols=179 Identities=22% Similarity=0.265 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
+..|..++.+.++.|..+.+...+...+|++.+|+|+|..+.++..|.|.++..++.++...+.||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
.++++++++++||+.++++|++.|++.|.+ +...++..++.|+++|++++++..++..++.++|..+|.++.+.+|||+
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 999999999999999999999999999999 8888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hcc
Q psy1725 331 LLALSTAPLLAFACICP-WLP 350 (837)
Q Consensus 331 ~f~i~~i~~~~~~~~~~-~~p 350 (837)
.|++.+..+++.++..+ .+|
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 99999887777665554 488
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=276.23 Aligned_cols=181 Identities=21% Similarity=0.272 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhhCChHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPA-LHCDW--QITRYQQALTT-----TIVFLGMMLSSTFWGYVSDRYGRKQAL 244 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-i~~~~--~~s~~~~~~i~-----s~~~lg~~vg~li~g~lsd~~GRr~vl 244 (837)
+++..+....++++++++|...++...+. +.+++ +.++. .+++. ++.+++..+|+++.|+++||+|||+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l 97 (438)
T PRK09952 19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence 34567778888999999999999988874 55666 66665 45543 345567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccHH--------HHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q psy1725 245 TLCAVLLFYYGILSSLAPSYT--------WMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFE 315 (837)
Q Consensus 245 ~~~~~l~~i~~i~~a~a~n~~--------~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lg 315 (837)
+++.++++++++++++++|+. .++++|+++|++.|+. +.+..++.|++|+++|++..+....+..+|.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 5889999999999998 7778888999999999999999999999999999
Q ss_pred HHHHHHHh--------cccChHHHHHHHHHHHHHHHHHHhhccCCcc
Q psy1725 316 VLLALIVM--------PTLGWKWLLALSTAPLLAFACICPWLPESAR 354 (837)
Q Consensus 316 p~l~~~l~--------~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~ 354 (837)
..+...+. ...|||+.|++.+++.++...+...+||+|+
T Consensus 178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~ 224 (438)
T PRK09952 178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAE 224 (438)
T ss_pred HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 88776654 2579999999988766554444444677654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=269.27 Aligned_cols=391 Identities=16% Similarity=0.182 Sum_probs=300.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHH
Q psy1725 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248 (837)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~ 248 (837)
.++++|+.++..+++++...++.+.+.+.+.|.+.+|.++|.++.+++.+.++++|+++-++.|.++||.+.|..+.+++
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH--HHHhcc
Q psy1725 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA--LIVMPT 325 (837)
Q Consensus 249 ~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~--~~l~~~ 325 (837)
++.++.+++.++++++..+.++-+++|+.+|.- +++...++.|++++|||+..++|+++-++|..+.|++. +++..+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998 99999999999999999999999999999999999998 888888
Q ss_pred cChHHHHHHHHHHHHHHHHHHhh-ccCCcchhccCCChHHHHHHHHHHHhccCCcccccccccccccccccccchHHHhh
Q psy1725 326 LGWKWLLALSTAPLLAFACICPW-LPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLS 404 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~~~~~-~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (837)
.+||..|++.++.+++..++.++ ++|+|...-...
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-------------------------------------------- 217 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-------------------------------------------- 217 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC--------------------------------------------
Confidence 89999999999877776666555 888875321100
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhhhh
Q psy1725 405 VQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMIT 484 (837)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~ 484 (837)
T Consensus 218 -------------------------------------------------------------------------------- 217 (448)
T COG2271 218 -------------------------------------------------------------------------------- 217 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhccc
Q psy1725 485 PYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 564 (837)
Q Consensus 485 ~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~ 564 (837)
T Consensus 218 -------------------------------------------------------------------------------- 217 (448)
T COG2271 218 -------------------------------------------------------------------------------- 217 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhhhhH--HHHHHhhhccCCCcc
Q psy1725 565 PESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSL--LLWYIWYVSKSYPSR 642 (837)
Q Consensus 565 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 642 (837)
+++.+++..+. +++.++.+..+.++.+.+...++.. .+++..+
T Consensus 218 -------------------ie~~~~d~~e~--------~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~v-------- 262 (448)
T COG2271 218 -------------------IEEYRGDPLEI--------YEEEKENEGLTAWQIFVKYVLKNKLIWLLALANV-------- 262 (448)
T ss_pred -------------------HHHhhcCchhh--------hhhhccCCCccHHHHHHHHHHcChHHHHHHHHHH--------
Confidence 00000000000 0000001112334444322333322 2222222
Q ss_pred hhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHH
Q psy1725 643 INKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIF 722 (837)
Q Consensus 643 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 722 (837)
...+.=|++.-|.|.++.|... ....++.....+.=+++++|.+
T Consensus 263 -----------fvYivR~gi~dW~p~YL~e~k~-------------------------~s~~~a~~a~~lfE~agl~G~L 306 (448)
T COG2271 263 -----------FVYVVRYGINDWGPLYLSEVKG-------------------------FSLVKANWAISLFEVAGLPGTL 306 (448)
T ss_pred -----------HHHHHHHHHhhhHHHHHHHhcC-------------------------CCHHHHHHHHHHHHHHhhHHHH
Confidence 3445557888899998877542 1234556666777789999999
Q ss_pred HHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccchhhHH
Q psy1725 723 ATIFVIEKF--GRKRTMAVQFVIFTACVSFLFICTQSR--AYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGT 798 (837)
Q Consensus 723 ~~~~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~~~g~ 798 (837)
++||++||+ |||..+.+.+++....+++.....++. ....+.++..+++..|..-+.-+...|..|.+.-|++.|+
T Consensus 307 l~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf 386 (448)
T COG2271 307 LAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF 386 (448)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence 999999996 777766555555444444444443333 4555566667777888888888999999999999999999
Q ss_pred HHHHHhh-hcchhHHHHHHHhhc-chhhHHHHHHHHhh
Q psy1725 799 CSAMARL-GAMITPYIAQVLLKS-SLSIAMTVYGVAAL 834 (837)
Q Consensus 799 ~~~~~~~-g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 834 (837)
...++++ |+..+....+++.|. +....|.++.++++
T Consensus 387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~ 424 (448)
T COG2271 387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAAL 424 (448)
T ss_pred hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHH
Confidence 9999999 999999999988887 55666665555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=269.72 Aligned_cols=179 Identities=20% Similarity=0.139 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
+|..+..+.++.+..........+.+|.+.+++|++..+.++..+.+.+++.++++++|+++||+|||+++..+.+++++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 86 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIA 86 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 55555555555555555555566678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHH
Q psy1725 254 YGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332 (837)
Q Consensus 254 ~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f 332 (837)
+++++++++|++.++++|+++|++.+.. +...+++.|++|+++|+++++++..+..+|.++||++++.+.+..||||.|
T Consensus 87 ~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 166 (390)
T PRK03545 87 SHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTF 166 (390)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHH
Confidence 9999999999999999999999999887 778888999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHH-hhccCC
Q psy1725 333 ALSTAPLLAFACIC-PWLPES 352 (837)
Q Consensus 333 ~i~~i~~~~~~~~~-~~~pes 352 (837)
++.++..++..+.. .++||.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 167 LAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 99887665554443 336654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-27 Score=271.22 Aligned_cols=183 Identities=22% Similarity=0.363 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
+.+|..+..+++..+++.++....++..|.+.+++|++..+.++..+.+.+++.+++++.|+++||+|||++++.+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
+++.+++++++|++.++++|++.|++.+.. +....++.|++|+++|+++.++...+..+|.+++|.+++.+.+..+||+
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~ 175 (496)
T PRK03893 96 SVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRA 175 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 999999999999999999999999998887 7788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcc
Q psy1725 331 LLALSTAPLLAFACICPWLPESAR 354 (837)
Q Consensus 331 ~f~i~~i~~~~~~~~~~~~pesp~ 354 (837)
.|++.++..++.++....+||+++
T Consensus 176 ~f~~~~~~~~~~~~~~~~~p~~~~ 199 (496)
T PRK03893 176 LFFIGILPIIFALWLRKNLPEAED 199 (496)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchh
Confidence 999866655544444445777654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=267.63 Aligned_cols=169 Identities=20% Similarity=0.360 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccH
Q psy1725 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY 264 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~ 264 (837)
+++..++...++...|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY 82 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
+.++++|++.|++.+.. +....++.|++|+++|++++++...+..+|.++++.+++.+.+..+||+.|++.++..++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 99999999999999988 78888889999999999999999999999999999999999888999999999887666555
Q ss_pred HHHh-hccCCc
Q psy1725 344 CICP-WLPESA 353 (837)
Q Consensus 344 ~~~~-~~pesp 353 (837)
+..+ +.||+|
T Consensus 163 ~~~~~~~~~~~ 173 (399)
T TIGR00893 163 VLWLKFIPDPP 173 (399)
T ss_pred HHhhheecCCC
Confidence 5444 466654
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=269.51 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-HHHHH-----HHHHHHHHHHHHHhhhhCChHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALT-TTIVF-----LGMMLSSTFWGYVSDRYGRKQALTLC 247 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i-~s~~~-----lg~~vg~li~g~lsd~~GRr~vl~~~ 247 (837)
|+.....++++.+++++|.+.++...|.+.+|++.++.+.++. .+... ++..+|+++.|+++||+|||++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~ 92 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT 92 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence 5557888889999999999999999999999999887765443 33332 23357899999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHH--------HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy1725 248 AVLLFYYGILSSLAPSYTW--------MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL 318 (837)
Q Consensus 248 ~~l~~i~~i~~a~a~n~~~--------l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l 318 (837)
.+++.++++++++++|++. ++++|+++|++.|.. +....+++|++|+++|++++++...+..+|..+++.+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~ 172 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL 172 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874 689999999999987 7777888999999999999999999888888888888
Q ss_pred HHHHh--------cccChHHHHHHHHHH
Q psy1725 319 ALIVM--------PTLGWKWLLALSTAP 338 (837)
Q Consensus 319 ~~~l~--------~~~gWr~~f~i~~i~ 338 (837)
++.+. +..|||+.|++.++.
T Consensus 173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 173 GYLLNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred HHHHHHhCCHHHHhccchHHHHHHHHHH
Confidence 77763 467999999986544
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=266.40 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHH
Q psy1725 189 SMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWML 268 (837)
Q Consensus 189 ~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~ 268 (837)
.......++..|.+.+++|++..+.+++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++|++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (377)
T TIGR00890 16 SGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY 95 (377)
T ss_pred hhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33466788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q psy1725 269 FLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 269 i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
++|++.|++.+.. +.....+.|++| ++|+++.++...+..+|.++++.+.+.+.+..+||+.|++.++..++..+..+
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 666777788886 68999999999999999988776766666778999999998887666655544
Q ss_pred -hccCC
Q psy1725 348 -WLPES 352 (837)
Q Consensus 348 -~~pes 352 (837)
+++|+
T Consensus 175 ~~~~~~ 180 (377)
T TIGR00890 175 FLIGYP 180 (377)
T ss_pred HheecC
Confidence 45544
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=271.73 Aligned_cols=176 Identities=17% Similarity=0.337 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q psy1725 177 LSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256 (837)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i 256 (837)
++..++++.++..++.+..++.+|.+.+++|.+..+.+|+.+.+.++..++.+++|+++||+|||++++.+.+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q psy1725 257 LSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335 (837)
Q Consensus 257 ~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~ 335 (837)
++++++|++.++++|+++|++.+.. +...+++.|++|+++|+++.+++..+..+|..+||.+++.+.++.+|||.|++.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 9999999999999999999999988 888889999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHH-hhccCC
Q psy1725 336 TAPLLAFACIC-PWLPES 352 (837)
Q Consensus 336 ~i~~~~~~~~~-~~~pes 352 (837)
++.+++..+.. +++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hHHHHHHHHHHHHHcCCc
Confidence 87665554444 446664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=263.00 Aligned_cols=425 Identities=19% Similarity=0.261 Sum_probs=311.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDW-Q-------ITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK 241 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~-~-------~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr 241 (837)
..+++...+.+..++.|.++||..+++...+-+...| | .+....+.+..+-.+|..+||+++|+++|++|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3456677788888999999999999999998887654 2 3456788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Q psy1725 242 QALTLCAVLLFYYGILSSLAP-------SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGAC 313 (837)
Q Consensus 242 ~vl~~~~~l~~i~~i~~a~a~-------n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~ 313 (837)
+++...+++..+++++++++. -..++...|++.|+|.|+- |...++.+|....++||..++.+.+..++|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 999999999999999888774 2467888999999999998 88888889999999999999988888888877
Q ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCccccccccccccccc
Q psy1725 314 FEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVG 393 (837)
Q Consensus 314 lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 393 (837)
.|.+++-.+. ..| |.|- ..++..++
T Consensus 195 aG~ivt~Iv~----------------------~~f--e~~~--~~~~~~~~----------------------------- 219 (538)
T KOG0252|consen 195 AGGIVALIVS----------------------AIF--EKIF--NGPSTYPH----------------------------- 219 (538)
T ss_pred hccHHHHHHH----------------------HHH--hccC--CCCCCchH-----------------------------
Confidence 7666554331 111 1110 00000000
Q ss_pred ccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhh
Q psy1725 394 EHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTC 473 (837)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~ 473 (837)
T Consensus 220 -------------------------------------------------------------------------------- 219 (538)
T KOG0252|consen 220 -------------------------------------------------------------------------------- 219 (538)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhhhhh
Q psy1725 474 SAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 553 (837)
Q Consensus 474 ~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~ 553 (837)
...-||..++++.++
T Consensus 220 -----------------------------------------------------------------ld~vWRl~~glg~vp 234 (538)
T KOG0252|consen 220 -----------------------------------------------------------------LDGVWRIIFGLGAVP 234 (538)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 012399999999999
Q ss_pred hHHHHhhhccccCCcchhhhcCCH-HHHHHHHHHHHHhcCCcccccccccccccccccchh---hhhhhhhhhhhhhHHH
Q psy1725 554 LLAFACICPWLPESARYHVASGQP-EKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGR---VKDLLSVQLRTTSLLL 629 (837)
Q Consensus 554 ~~~~~~~~~~~~esp~~l~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 629 (837)
++..+..+...|||+||-...++. ++|. ++.......+-+++ +..++.......+ +...+..+.-+..+..
T Consensus 235 a~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~~~~~~--~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt 309 (538)
T KOG0252|consen 235 ALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSVDIEAE--STAESDVPPPSNSFGLFSRLFLRWHGKHLLGT 309 (538)
T ss_pred HHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccccccchh--hccccCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999998433322 2222 11111000000000 0011111111122 3333433345667778
Q ss_pred HHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHH
Q psy1725 630 WYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMD 709 (837)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (837)
+..|| ...+.+|+.-+++.+++++-+...+.+.. +..-..+..+
T Consensus 310 ~~~WF-------------------llDiafy~~nL~~s~I~~~ig~~~~~~~~-----------------~~~~~vA~~~ 353 (538)
T KOG0252|consen 310 AGTWF-------------------LLDIAFYGQNLFQSVIFSAIGVIPSANTY-----------------HELFKVAEGN 353 (538)
T ss_pred HHHHH-------------------hhhhhhhccccHHHHHHHhhccCCCcchH-----------------HHHHHHHHHH
Confidence 88899 88999999999999999877653222100 1112344566
Q ss_pred HHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhhhhhhhhccc
Q psy1725 710 LLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQS----RAYLTVTLFVARGIIAGVFQAAYVYTPE 785 (837)
Q Consensus 710 ~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~E 785 (837)
.++.....++|+.++.+++|++|||+..+.++.++++..+++++.... ....++..+...+...|.....+++.+|
T Consensus 354 ~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE 433 (538)
T KOG0252|consen 354 LIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAE 433 (538)
T ss_pred HHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehh
Confidence 677778889999999999999999999999999999999888776631 1223344455555677899999999999
Q ss_pred cCCCCccchhhHHHHHHHhhhcchhHHHHHHHhh-----c-chhhHHHHHHHHhhc
Q psy1725 786 VYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLK-----S-SLSIAMTVYGVAALK 835 (837)
Q Consensus 786 ~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~-----~-~~~~~~~~~~~~~~~ 835 (837)
+||++.|++..|++.+.+.+|++++.+.+.++.+ . +....+++++++++.
T Consensus 434 ~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~ 489 (538)
T KOG0252|consen 434 IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL 489 (538)
T ss_pred hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 4 566778888776653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=262.85 Aligned_cols=186 Identities=15% Similarity=0.161 Sum_probs=152.6
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH
Q psy1725 166 NAFGFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT 245 (837)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~ 245 (837)
+..+..++++..+.......++..++...+++.+|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 26 RLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 33444444555566666677777777788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--
Q psy1725 246 LCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-- 323 (837)
Q Consensus 246 ~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-- 323 (837)
++.++++++.+++++++|++.++++|++.|++.+.......+++|++|+++||+++++......+|..+++.+...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~ 185 (476)
T PLN00028 106 FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL 185 (476)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988876445567799999999999999998766667666665554432
Q ss_pred --c-----ccChHHHHHHHHHHHHHHHHHHhhccC
Q psy1725 324 --P-----TLGWKWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 324 --~-----~~gWr~~f~i~~i~~~~~~~~~~~~pe 351 (837)
+ ..|||+.|++.+++.++..+..+++++
T Consensus 186 ~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 186 IKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 248999999988877666655555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=258.86 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
.|.+...++++.+..... ..+++.+|.+++|+|+|..+.++..+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 345544444444443333 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChHHH
Q psy1725 254 YGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GWKWL 331 (837)
Q Consensus 254 ~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gWr~~ 331 (837)
+.+++++++|++.++++|+++|++.+.. +....++.|++| ++|+++++++..+..+|..+|+.+++.+.++. +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999988 666677799986 88999999999999999999999999888775 89998
Q ss_pred HHHHHHHHHHH
Q psy1725 332 LALSTAPLLAF 342 (837)
Q Consensus 332 f~i~~i~~~~~ 342 (837)
+.+.++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (393)
T PRK09705 166 LAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHH
Confidence 87665544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=260.55 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=154.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++++|.++..+++.......+...++..+|.+.++ |++..+.+++.+++.++++++++++|+++||+|||++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 34566666667777778888888888899999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc----cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhc
Q psy1725 251 LFYYGILSSLAP----SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGA-CFEVLLALIVMP 324 (837)
Q Consensus 251 ~~i~~i~~a~a~----n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~-~lgp~l~~~l~~ 324 (837)
++++.+++++++ +++.++++|++.|++.|.. +.....+.|++|+++|++++++++.+..+|. +.+|+++..+..
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999988864 7888999999999998887 7677778999999999999999999999886 456665544444
Q ss_pred ccChHHHHHHHHHHHHHH-HHHHhhccCCcc
Q psy1725 325 TLGWKWLLALSTAPLLAF-ACICPWLPESAR 354 (837)
Q Consensus 325 ~~gWr~~f~i~~i~~~~~-~~~~~~~pesp~ 354 (837)
..+||+.|++.++..++. ++..+++||+|+
T Consensus 183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 459999999988765554 445556888764
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=256.28 Aligned_cols=174 Identities=14% Similarity=0.193 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
|++++..+++..++.+.+....+..+|.+.+++|++..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cccChHHH
Q psy1725 254 YGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-PTLGWKWL 331 (837)
Q Consensus 254 ~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-~~~gWr~~ 331 (837)
+.+++++++|++.++++|+++|++.+.. +....++.|++|+++|+.+++.......+|..++|.+.+.+. +..+||+.
T Consensus 85 ~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 85 AVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999998887 777888899999999999999999999999999999888765 45799999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy1725 332 LALSTAPLLAFACICP 347 (837)
Q Consensus 332 f~i~~i~~~~~~~~~~ 347 (837)
|++.++..++..+..+
T Consensus 165 f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 165 YACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988876655544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-25 Score=249.53 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
.|..+..+..+.+..........+.+|.+.+++|+++.+.++..+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 56665556666666666666666778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHH
Q psy1725 254 YGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332 (837)
Q Consensus 254 ~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f 332 (837)
+.+++++++|++.++++|+++|++.+.. +...+++.|++|+++|+++.++...+..+|.++||++++.+.+..+||+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 9999999999999999999999999988 888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hccCC
Q psy1725 333 ALSTAPLLAFACICP-WLPES 352 (837)
Q Consensus 333 ~i~~i~~~~~~~~~~-~~pes 352 (837)
++.++.+++..+... .+||+
T Consensus 178 ~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 178 NAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCC
Confidence 998765555443333 35664
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=253.39 Aligned_cols=174 Identities=14% Similarity=0.233 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+..++++.++..++.+.+++.+|.+.+++|.+..+.+|+.+.+.++.+++.+++|+++||+|||++++.+.++++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 44566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Q psy1725 258 SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336 (837)
Q Consensus 258 ~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~ 336 (837)
++++++++.++++|+++|++.+.. +.....+.|++|+++|+.+.++......+|..+||.+++.+.++.+|||.|++..
T Consensus 92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999999998 7888888999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhh-ccC
Q psy1725 337 APLLAFACICPW-LPE 351 (837)
Q Consensus 337 i~~~~~~~~~~~-~pe 351 (837)
+..++..+.... .|+
T Consensus 172 ~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 172 PVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 655554444433 444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=249.62 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~ 260 (837)
+..+.++..+......+.+|.+..+++.+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++.++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cc-----cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 261 AP-----SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 261 a~-----n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
++ |++.++++|++.|++.+.. +...+++.|++|+++|+++.++.+.+..+|.++||++++.+.+..+||+.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~ 163 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWV 163 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88 9999999999999999988 78888899999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy1725 335 STAPLLAFACICPW 348 (837)
Q Consensus 335 ~~i~~~~~~~~~~~ 348 (837)
.++..++..+..++
T Consensus 164 ~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 164 DAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHh
Confidence 87765555444443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=263.43 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=166.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhCCChhHHHHHHHHHHHHHHHH
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHC----------------------DWQITRYQQALTTTIVFLGMMLS 227 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~----------------------~~~~s~~~~~~i~s~~~lg~~vg 227 (837)
..+.+|.+..+++++..+.+.|+..++.+.+.+.+ |++++..+.+++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 45668889999999999999999999999888876 88999999999999999999999
Q ss_pred HHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHH
Q psy1725 228 STFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLL 304 (837)
Q Consensus 228 ~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~ 304 (837)
+++.|+++||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+.. +....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999887554 67889999999999999998 88888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHHhh-ccCCcc
Q psy1725 305 DCFWALGACFEVLLALIVMPT-LGWKWLLALSTAPLLAFACICPW-LPESAR 354 (837)
Q Consensus 305 ~~~~~lG~~lgp~l~~~l~~~-~gWr~~f~i~~i~~~~~~~~~~~-~pesp~ 354 (837)
..+..+|.++++++++.+.+. .+||+.|++.++.+++..+++++ .+|+|+
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999888 49999999998877776665555 566653
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-25 Score=247.67 Aligned_cols=174 Identities=21% Similarity=0.305 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a 259 (837)
.+....+..........+..|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 9 LLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 33333456677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy1725 260 LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338 (837)
Q Consensus 260 ~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~ 338 (837)
++++++.++++|++.|++.+.. +...+++.|++|+++|+++.++.+....+|..+||.+++.+.+..+||+.|++.++.
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999988 788888899999999999999999999999999999999999889999999988876
Q ss_pred HHHHHHHH-hhccCCc
Q psy1725 339 LLAFACIC-PWLPESA 353 (837)
Q Consensus 339 ~~~~~~~~-~~~pesp 353 (837)
.++..+.. ++.||++
T Consensus 169 ~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 169 GILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 55554444 4466653
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=250.32 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+....+..+..+.......+.+|.+++|+|++..+.++..+.+.+++.++++++|+++||+|||+++..+.++++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l 84 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM 84 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 34555677788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Q psy1725 258 SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336 (837)
Q Consensus 258 ~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~ 336 (837)
+++++|++.+++.|++.|++.+.. +....++.|++++++|+++++++..+..+|..+||.+++.+.+..+|||.|++.+
T Consensus 85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 999999999999999999999887 6667777999999999999999999999999999999999998899999999988
Q ss_pred HHHHHHHHH-HhhccCCc
Q psy1725 337 APLLAFACI-CPWLPESA 353 (837)
Q Consensus 337 i~~~~~~~~-~~~~pesp 353 (837)
+..++..+. .+++||.+
T Consensus 165 ~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 165 VFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 765554443 34577753
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=254.44 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc
Q psy1725 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP 262 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~ 262 (837)
++++...++...++...|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHhcccChHHHHHHHHHHHH
Q psy1725 263 SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV-LLALIVMPTLGWKWLLALSTAPLL 340 (837)
Q Consensus 263 n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp-~l~~~l~~~~gWr~~f~i~~i~~~ 340 (837)
+++.++++|++.|++.+.. +...+++.|++|+++|+++.++...+..+|.+++| ++++.+.+..+||+.|++.++..+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999988 88888999999999999999999999999999999 577777788899999998887655
Q ss_pred HHH-HHHhhccCCcc
Q psy1725 341 AFA-CICPWLPESAR 354 (837)
Q Consensus 341 ~~~-~~~~~~pesp~ 354 (837)
+.. +..++.||+|+
T Consensus 162 ~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 162 IVSLICFLLLRDSPQ 176 (379)
T ss_pred HHHHHHheeeCCCcc
Confidence 544 44445777653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-25 Score=246.01 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHC-DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~-~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~ 252 (837)
.+..+....++.++........++..+.+.+ ++|+|..+.+++.+++.++++++.++.|++.||+|.|+++.++.+++.
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4456666777777888888999999998876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-----ccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 253 YYGILSSLA-----PSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALI 321 (837)
Q Consensus 253 i~~i~~a~a-----~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~ 321 (837)
+.+++++++ +|++.+++.|++.|++.+..+.....+++|+|+++||+++++......+|..++++++..
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987 899999999999999844448888999999999999999999976666666655555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=247.47 Aligned_cols=165 Identities=16% Similarity=0.102 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i 256 (837)
+..+.+..++..++.....+.+|. +.+++|.+..+.+++.+++.+++.+++++.|+++||+|||++++.+.++++++.+
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~ 96 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGL 96 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHH
Confidence 444666777778888888888886 6789999999999999999999999999999999999999999999999988877
Q ss_pred HHHhcc--------cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy1725 257 LSSLAP--------SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG 327 (837)
Q Consensus 257 ~~a~a~--------n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g 327 (837)
.++++. ++..+++.|+++|++.+.. +....++.|++|+++|++++++...+..+|.++|+.+++.+.+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 97 LYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred HHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 766542 5678999999999999988 7777888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy1725 328 WKWLLALSTAPLLAF 342 (837)
Q Consensus 328 Wr~~f~i~~i~~~~~ 342 (837)
||+.+++.++..++.
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 177 LAGLGLLIMLLALLG 191 (399)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988776654443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=251.10 Aligned_cols=417 Identities=15% Similarity=0.113 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+..+++......+.....+..++.+..|+|- .....|+.+.+.++.+++.++.|+|+|.||||++++.+.++..++.+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv 124 (599)
T PF06609_consen 46 FAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIV 124 (599)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHH
Confidence 3334444444555555667778999999994 567899999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 258 SSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 258 ~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
++.++|..+++++-.+.|+|.|........++|+.|.|.|+...++......+...+++.++..+..+.+|||.|++.++
T Consensus 125 ~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i 204 (599)
T PF06609_consen 125 CATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII 204 (599)
T ss_pred hhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence 99999999999999999999877766666689999999999988888777666667888888887777899999999987
Q ss_pred HHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccccccccccccccccchHHHhhhhhhhHHHHHHHH
Q psy1725 338 PLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYI 417 (837)
Q Consensus 338 ~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (837)
...+.+++.++...+|++...+++....++.++++.
T Consensus 205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD-------------------------------------------- 240 (599)
T PF06609_consen 205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELD-------------------------------------------- 240 (599)
T ss_pred HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhh--------------------------------------------
Confidence 655444433332222222111111111111121110
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccchhhhhhhhHhHhhhhhHHHHHHHHHHHHH
Q psy1725 418 WYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVL 497 (837)
Q Consensus 418 ~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~ 497 (837)
+++..+.
T Consensus 241 --------------------------------------------------------------------~IG~~L~----- 247 (599)
T PF06609_consen 241 --------------------------------------------------------------------WIGIFLF----- 247 (599)
T ss_pred --------------------------------------------------------------------HHHHHHH-----
Confidence 1111111
Q ss_pred HHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CcchHHHHHhhhhhhHHHHhhhccccCCcchhhhcC
Q psy1725 498 LFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMP--TLGWKWLLALSTAPLLAFACICPWLPESARYHVASG 575 (837)
Q Consensus 498 l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~ 575 (837)
++.+.-++++...+. .+.|+..-+.+.+...+..++.|.+.|. |.
T Consensus 248 ---------------------------~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~--~~---- 294 (599)
T PF06609_consen 248 ---------------------------IAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEW--FG---- 294 (599)
T ss_pred ---------------------------HHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhh--hc----
Confidence 122222333333333 4689999888777777777777777773 00
Q ss_pred CHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhhhhHHHHHHhhhccCCCcchhhHHhhhcccce
Q psy1725 576 QPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKSYPSRINKAVFLFHRTVC 655 (837)
Q Consensus 576 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 655 (837)
..++.---.++++. +|.....+++.| +.
T Consensus 295 -------------------------------~~~~Pl~P~~Lf~~--~r~~~~~lvi~f-------------------i~ 322 (599)
T PF06609_consen 295 -------------------------------APKDPLFPHRLFKD--RRGFAALLVISF-------------------IS 322 (599)
T ss_pred -------------------------------cCCCCcCCHHHhcc--chHHHHHHHHHH-------------------HH
Confidence 00111112223332 122222233333 33
Q ss_pred eEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHhhCC-c
Q psy1725 656 AFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGR-K 734 (837)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~gr-r 734 (837)
...||+...+.|......-.+... ...+..+.....+++..+|.++.+.+..++|| |
T Consensus 323 G~~~~s~~~l~p~~~~~vf~~d~~----------------------~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K 380 (599)
T PF06609_consen 323 GMNFFSVNILWPQQVVNVFGSDPI----------------------SITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK 380 (599)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCc----------------------ccceeehhhhhHHHHHHHHHHHHHHHHHHccchh
Confidence 344566655555543322110000 00122344456677788888889999999988 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHH
Q psy1725 735 RTMAVQFVIFTACVSFLFICTQSR-AYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYI 813 (837)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~ 813 (837)
..++++.+.+.+.+.+++....+. ...+.+.++..++.++.-.+..+.+.-..|.+..++++|+...+..+|+.++.-+
T Consensus 381 w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI 460 (599)
T PF06609_consen 381 WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI 460 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556778777777766666665333 2333444445455555555666666667899999999999999999999999988
Q ss_pred HHHHhh
Q psy1725 814 AQVLLK 819 (837)
Q Consensus 814 ~~~~~~ 819 (837)
+.-+..
T Consensus 461 y~~I~~ 466 (599)
T PF06609_consen 461 YNAIFT 466 (599)
T ss_pred HHHHHH
Confidence 865544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=243.33 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH-
Q psy1725 182 GLCWMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS- 259 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a- 259 (837)
.++.++.....+...+.+|. +.+|+|+|..+.+++.+++.+++.++++++|+++||+|||++++.+.+.+.++.+...
T Consensus 21 ~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 100 (392)
T PRK12382 21 AFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLL 100 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHh
Confidence 33445555566677777775 6789999999999999999999999999999999999999999999888777655332
Q ss_pred --h-----cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHH
Q psy1725 260 --L-----APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWL 331 (837)
Q Consensus 260 --~-----a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~ 331 (837)
. .+|++.++++|+++|++.+.. +...+++.|++|+++|++++++.+.+..+|.++||++++.+.+..|||+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (392)
T PRK12382 101 AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAAL 180 (392)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 2 358899999999999999887 77778889999999999999999999999999999999999888999998
Q ss_pred HHHHHHHHHH
Q psy1725 332 LALSTAPLLA 341 (837)
Q Consensus 332 f~i~~i~~~~ 341 (837)
+++..+..++
T Consensus 181 ~~~~~~~~~~ 190 (392)
T PRK12382 181 ALTTMVLPLL 190 (392)
T ss_pred HHHHHHHHHH
Confidence 7766554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=245.15 Aligned_cols=183 Identities=19% Similarity=0.163 Sum_probs=164.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++..+...+.+.+..++..++...+.+.+|.+.+++|++..+.++..+.+.+++.+++++.|+++||+|||++++.+.++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 35567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChH
Q psy1725 251 LFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWK 329 (837)
Q Consensus 251 ~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr 329 (837)
.+++.++++++++++.+++.|+++|++.+.. +...+.+.|++|+++|+++.++......+|..+||.+++.+.+..+||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999998887 777888899999999999999998888899999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHH-hhccCCc
Q psy1725 330 WLLALSTAPLLAFACIC-PWLPESA 353 (837)
Q Consensus 330 ~~f~i~~i~~~~~~~~~-~~~pesp 353 (837)
+.|++.++..++..+.. +.+||++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998887655554433 3467654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=247.01 Aligned_cols=172 Identities=28% Similarity=0.501 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q psy1725 182 GLCWMADSMEMTILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~ 260 (837)
+++.++..++.....+.+| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 4677888888889999999 899999999999999999999999999999999999999999999999999999777777
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
++|.+.++++|++.|++.+.. +...+++.|++|+++|++++++...+..+|.+++|++++.+.+..+||+.|++.++..
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILS 161 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHH
T ss_pred hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchh
Confidence 788889999999999999888 8888999999999999999999999999999999999999998899999999999877
Q ss_pred HHHHHH-HhhccCCc
Q psy1725 340 LAFACI-CPWLPESA 353 (837)
Q Consensus 340 ~~~~~~-~~~~pesp 353 (837)
++..++ ..++++++
T Consensus 162 ~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 162 LIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHCCC---S
T ss_pred hhhhhhHhhhhhhcc
Confidence 776654 34455543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-24 Score=240.48 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc
Q psy1725 182 GLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA 261 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a 261 (837)
.+..++..+....+.+..|.+.+++|.+..+.++..+++.+++.++++++|+++||+|||++++.+.++..++.++++++
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 91 (401)
T PRK11043 12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV 91 (401)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 33355556677788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLL 340 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~ 340 (837)
+|++.+++.|++.|++.+.. +...+.+.|++++++++...+.......+|..++|++++.+.+..+||+.|++.++..+
T Consensus 92 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~ 171 (401)
T PRK11043 92 ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITL 171 (401)
T ss_pred cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999998877 66667889999999999999999989999999999999999998999999999887776
Q ss_pred HHHHHHhhccCC
Q psy1725 341 AFACICPWLPES 352 (837)
Q Consensus 341 ~~~~~~~~~pes 352 (837)
+..+..++++|+
T Consensus 172 ~~~~~~~~~~~~ 183 (401)
T PRK11043 172 LLILPTLRLKPS 183 (401)
T ss_pred HHHHHHHHcCCC
Confidence 666655556554
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=253.37 Aligned_cols=180 Identities=13% Similarity=0.091 Sum_probs=155.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHH
Q psy1725 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248 (837)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~ 248 (837)
+.+.++|.++..+.+.......+...++...+.+.+++|++..+.+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 33456787777777776666666677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHH-HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy1725 249 VLLFYYGILSSLAPSYTWMLF-LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL 326 (837)
Q Consensus 249 ~l~~i~~i~~a~a~n~~~l~i-~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~ 326 (837)
++++++.+++++++|++.+++ .|++.|++.+.. ++...++.++++ ++|+++.++...+..+|..++|.+++.+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875 579999998876 666777789885 89999999999999999999999999999989
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 327 GWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 327 gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
||||.|++.++..++..+..+++
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987666554444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-24 Score=239.72 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
...+.+..+........+.+.+|.+.+++|.+..+.++..++|.++++++++++|+++||+|||++++.+.+++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~ 97 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAA 97 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 44556667777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Q psy1725 258 SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALST 336 (837)
Q Consensus 258 ~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~ 336 (837)
+++++|++.++++|+++|++.+.. +....++.|++++++|+++++++..+..+|.++||++++.+.+..||||.|++.+
T Consensus 98 ~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 98 TLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999998876 5666777999999999999999999999999999999999988889999999988
Q ss_pred HHHHHHHHH-HhhccCCc
Q psy1725 337 APLLAFACI-CPWLPESA 353 (837)
Q Consensus 337 i~~~~~~~~-~~~~pesp 353 (837)
+..++..+. ++++||++
T Consensus 178 ~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 178 VMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 876665544 44588864
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=239.94 Aligned_cols=174 Identities=19% Similarity=0.292 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
..+++.++........++..|. +++++|++..+.+++.+++.++++++++++|+++||+|||++++++.++..++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~ 84 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA 84 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4556667777778888999995 999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc-cHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccC
Q psy1725 259 SLAP-SYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP----------TLG 327 (837)
Q Consensus 259 a~a~-n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~----------~~g 327 (837)
++++ |++.++++|++.|++.+......++++|++|+++|+++.++...+..+|..+++.+++.+.. ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 85 GLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred HHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999 99999999999999866556677888999999999999999997777888777777766543 348
Q ss_pred hHHHHHH-HHHH-HHHHHHHHhhccCCc
Q psy1725 328 WKWLLAL-STAP-LLAFACICPWLPESA 353 (837)
Q Consensus 328 Wr~~f~i-~~i~-~~~~~~~~~~~pesp 353 (837)
|||.|++ .++. .+...+...+.+|+|
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADTP 192 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccCC
Confidence 9999944 3443 333344444567665
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=235.05 Aligned_cols=143 Identities=14% Similarity=0.102 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH---h-cccHHHHHHH
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS---L-APSYTWMLFL 270 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a---~-a~n~~~l~i~ 270 (837)
....++.+.+|+|.+..+.++..+.+.++..++.+++|+++||+|||+++..+.++++++.+++. . .+|++.+++.
T Consensus 32 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 32 EQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 33445666788999999999999999999999999999999999999999999999998877653 3 3588999999
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHH-HHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGA-CFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~-~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
|++.|++.+.. +...+.+.+++|+++|++++++.+++..+|. +++|++++.+.+..||+..+|....
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999998877 6667777899999999999999999999997 6899999998888898777766544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=232.96 Aligned_cols=170 Identities=30% Similarity=0.474 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a 259 (837)
.+.+..+...++....++..+.+.+++|.+..+.+++.+.+.++..++++++|+++||+|||+.+..+.++..++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy1725 260 LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338 (837)
Q Consensus 260 ~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~ 338 (837)
+++|++.++++|++.|++.+.. +...+++.|++|+++|++.+++......+|..++|.+++.+.+..+||+.+++.++.
T Consensus 83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (352)
T cd06174 83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL 162 (352)
T ss_pred HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999988 888888899999999999999999999999999999999999988999999998876
Q ss_pred HHHHHHHHhhc
Q psy1725 339 LLAFACICPWL 349 (837)
Q Consensus 339 ~~~~~~~~~~~ 349 (837)
.++..+...++
T Consensus 163 ~~~~~~~~~~~ 173 (352)
T cd06174 163 GLLLALLLLFL 173 (352)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=237.57 Aligned_cols=173 Identities=23% Similarity=0.259 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHCDWQITRYQ-----QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~-----~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~ 254 (837)
.++++.++..+......+.+|.+.+++|++..+ .+++.+++.++..++++++|+++||+|||++++.+.++.+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 97 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV 97 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence 334556667777788888999999999988544 488999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 255 GILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 255 ~i~~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
.+++++++|++.+++.|++.|++.+..+.....+.|++|+++|+++.++...+..+|.+++|.+++.+.+..+||+.|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 177 (408)
T PRK09874 98 MVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFI 177 (408)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999999999999998665566777789999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHH-hhccCC
Q psy1725 335 STAPLLAFACIC-PWLPES 352 (837)
Q Consensus 335 ~~i~~~~~~~~~-~~~pes 352 (837)
.++..++..+.. +++||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 178 TASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 887655544443 446664
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=233.29 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH-HHHHHHHHHHHHHHh
Q psy1725 183 LCWMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT-LCAVLLFYYGILSSL 260 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~-~~~~l~~i~~i~~a~ 260 (837)
+.+++..+......+.+|. +++++|.+..+.+++.+++.++..+.+++.|+++||+|||+.++ .+.++..++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777887775 57899999999999999999999999999999999999888765 456666778889999
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHH--HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKC--VVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~--~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
++|++.+++.|++.|.+.+.. +....+..|+.++++|+.. .+....+..+|.++||.+++.+.+..+||+.|++.++
T Consensus 84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~ 163 (375)
T TIGR00899 84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAAL 163 (375)
T ss_pred cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence 999999999999998777766 7777777898887777754 5777888899999999999999988999999999988
Q ss_pred HHHHHHHHH-hhccCCcc
Q psy1725 338 PLLAFACIC-PWLPESAR 354 (837)
Q Consensus 338 ~~~~~~~~~-~~~pesp~ 354 (837)
..++..+.. +++||+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 164 AFVLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHHHHHhCCCccc
Confidence 666555444 44888653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=244.92 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
+|..+....+.+...+.+...+....|.+++ +|++..+.+++.+++.++..+++++.|+++||+|||++++.+.++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4566666667778888888888888888876 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH-HhcccC
Q psy1725 254 YGILSSLA----PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALI-VMPTLG 327 (837)
Q Consensus 254 ~~i~~a~a----~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~-l~~~~g 327 (837)
+.++++++ +++..+++.|++.|++.|.. +.....+.|++|+++|++++++.+.+..+|..+++.+.+. +....+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 99888765 46788889999999998887 7777888999999999999999999999999998877665 444579
Q ss_pred hHHHHHHHHHHHHHHH-HHHhhccCCcc
Q psy1725 328 WKWLLALSTAPLLAFA-CICPWLPESAR 354 (837)
Q Consensus 328 Wr~~f~i~~i~~~~~~-~~~~~~pesp~ 354 (837)
||+.|++.++..++.. +.++++||+|+
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~ 211 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQ 211 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9999999887666544 44555888764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=234.04 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+..+.++.++...+.....+.+|.+.+++|.|..+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy1725 258 SSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL 326 (837)
Q Consensus 258 ~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~ 326 (837)
+++++|++.++++|+++|++.+.. +.....+.+..++++|+++++++..+..+|..+||.+++.+.+..
T Consensus 88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 88 LGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999888 666777788899999999999999999999999999999987653
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=237.49 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CChhHHHHHHH--HHHH---HHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 186 MADSMEMTILSILSPALHCDWQ--ITRYQQALTTT--IVFL---GMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~i~~~~~--~s~~~~~~i~s--~~~l---g~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
+.+++|...++...+.+.+++. .++.+.++..+ .+.. +..+++++.|+++||+|||++++++.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4678889999998888888864 34444554443 3333 334689999999999999999999999999999999
Q ss_pred HhcccHH--------HHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh------
Q psy1725 259 SLAPSYT--------WMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM------ 323 (837)
Q Consensus 259 a~a~n~~--------~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~------ 323 (837)
++++++. .++++|+++|++.+.. +....++.|++++++|++..++...+..+|.+++++++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999976 4889999999999888 778888999999999999999999999999999999887664
Q ss_pred --cccChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 324 --PTLGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 324 --~~~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
+..+||+.|++.++..++..+....+||++
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP 194 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 356899999988776665555545566654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=241.19 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh----
Q psy1725 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL---- 260 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~---- 260 (837)
.++..+......+.+|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 4455566677788889999999999999999999999999999999999999999999999988888877665543
Q ss_pred -cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy1725 261 -APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338 (837)
Q Consensus 261 -a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~ 338 (837)
+++++.+++.|++.|++.+.. +...+.+.|++|+++|+++.++......+|..+||.+++.+.+..+|||.|++.++.
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~ 185 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAG 185 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 578899999999999998877 777788899999999999999999999999999999999998888999999988876
Q ss_pred HHHHHHHHhhccCCc
Q psy1725 339 LLAFACICPWLPESA 353 (837)
Q Consensus 339 ~~~~~~~~~~~pesp 353 (837)
.++..+..+.+||++
T Consensus 186 ~~~~~~~~~~l~~~~ 200 (417)
T PRK10489 186 TFITLLPLLRLPALP 200 (417)
T ss_pred HHHHHHHHHhCCCCC
Confidence 666666666677654
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-23 Score=235.96 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHH
Q psy1725 175 AKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254 (837)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~ 254 (837)
+..+..+++..++.++.....+...|.+++++|+++.+.++..+.+.+++.+++++.|++.||+|||+++.++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~ 104 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 34456666777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 255 GILS---SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 255 ~i~~---a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
.+++ +.++|++.++++|+++|+|.|.. +...+++.|+.++++|+..+++.+....+|..+|+++++.+.
T Consensus 105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 57899999999999999999998 777888889887777777899999999999999999987654
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-25 Score=239.62 Aligned_cols=182 Identities=17% Similarity=0.296 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
+..+..+.++++...++..|...+....+.+++.||+++...+++.+.|.+.+.++.++.|+|+|||.||+++.++..+|
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 44567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hH
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WK 329 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr 329 (837)
.++.++++++..++++.++|.+.|+|.+.. +.+.++++|.+|.++|++++++++.+.++|..+|.+++..+.+..+ ||
T Consensus 109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr 188 (493)
T KOG1330|consen 109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR 188 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceE
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999987766 99
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccCCc
Q psy1725 330 WLLALSTAPLLAFACICPW-LPESA 353 (837)
Q Consensus 330 ~~f~i~~i~~~~~~~~~~~-~pesp 353 (837)
|.|++.++.+++..++.++ ++|++
T Consensus 189 ~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 189 WAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred EEEEeehHHHHHHHHHHHhhccCcc
Confidence 9999999988777666554 77764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=228.37 Aligned_cols=179 Identities=18% Similarity=0.233 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHH
Q psy1725 175 AKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254 (837)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~ 254 (837)
+....+..+..++..+..+...+.+|.+.+++|++..+.+++.+++.+++.++++++|+++||+|||++++.+.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 86 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence 33344444445566677778888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHH
Q psy1725 255 GILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLA 333 (837)
Q Consensus 255 ~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~ 333 (837)
.+++.+++|++.+++.|++.|++.+.. +....+..|.+++++|+.+.++...+..+|..++|++++.+.+..+||+.|+
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~ 166 (394)
T PRK11652 87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL 166 (394)
T ss_pred HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 999999999999999999999998877 6666777999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHH-HHHhhccCCc
Q psy1725 334 LSTAPLLAFA-CICPWLPESA 353 (837)
Q Consensus 334 i~~i~~~~~~-~~~~~~pesp 353 (837)
+.++..++.. +..+++||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 167 FLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHHHHhCCccC
Confidence 9877555443 3445577764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=229.64 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+.++++..++.++.....++.+|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||++++++.++++++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 44666777888888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh---cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Q psy1725 258 SSL---APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT-------- 325 (837)
Q Consensus 258 ~a~---a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-------- 325 (837)
+.. .+|++.+++.|++.|+|.|.. +...+++.++.|+++|++.+++.+....+|..+||++++.+...
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 644 468999999999999999998 88888889999999999999999999999999999999877422
Q ss_pred ------------------cChHHHHHHHHHHHHHHHHH
Q psy1725 326 ------------------LGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 326 ------------------~gWr~~f~i~~i~~~~~~~~ 345 (837)
.+||++|++.++..++..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25888887766654444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=239.12 Aligned_cols=184 Identities=18% Similarity=0.335 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSIL-SPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAV 249 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~ 249 (837)
.|..+.++..++..++....+...++.+ +..+.+|.+....+.+++.++|++++++|.++++.|.||++-.+.+....+
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~ 119 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGI 119 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHH
Confidence 3445666777888888888888766554 456778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----
Q psy1725 250 LLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM----- 323 (837)
Q Consensus 250 l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~----- 323 (837)
++++..++++...|++.+++.|++.|+.+++. |....+++.|+.+++||..++++.++..+|.++|.+++..+.
T Consensus 120 ~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 120 LWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999999998 888888899999999999999999999999999999998863
Q ss_pred -cccChHHHHHHHHHHHHHHHHHHh-hccCCcc
Q psy1725 324 -PTLGWKWLLALSTAPLLAFACICP-WLPESAR 354 (837)
Q Consensus 324 -~~~gWr~~f~i~~i~~~~~~~~~~-~~pesp~ 354 (837)
...||||.|++.++..++..++.+ ++|+.|.
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 356899999999987777766555 4999875
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=226.94 Aligned_cols=164 Identities=14% Similarity=0.317 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy1725 190 MEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLF 269 (837)
Q Consensus 190 ~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i 269 (837)
+....+.+.+|.+.+++|++..+.++..+++.++..++.+++|+++||+|||+++..+.++.+++.+++++++|++.+++
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY 84 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH-HHh
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC-ICP 347 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~-~~~ 347 (837)
+|++.|++.+.. +...+++.|++|+++|++++++...+..+|..++|++++.+.+..+||+.|++.++..++..+ ..+
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888 777888899999999999999999999999999999999999888999999988876655544 345
Q ss_pred hccCCc
Q psy1725 348 WLPESA 353 (837)
Q Consensus 348 ~~pesp 353 (837)
++||++
T Consensus 165 ~~~~~~ 170 (377)
T PRK11102 165 FIPETL 170 (377)
T ss_pred hCCccC
Confidence 577753
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=225.00 Aligned_cols=171 Identities=22% Similarity=0.285 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc
Q psy1725 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP 262 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~ 262 (837)
...+..........+.+|.+.+++|.+..+.++..+.+.++..+++++.|+++||+|||++++.+.+++.++.+++..++
T Consensus 10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~ 89 (392)
T PRK10473 10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE 89 (392)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555555666889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q psy1725 263 SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLA 341 (837)
Q Consensus 263 n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~ 341 (837)
|++.++++|+++|++.+.. +....++.|++|+++|+++.++.+....+|.+++|++++.+.+..+||+.|++.++..++
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i 169 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGIL 169 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHH
Confidence 9999999999999998887 778888899999999999999999999999999999999988888999999998876555
Q ss_pred HHHH-HhhccCCc
Q psy1725 342 FACI-CPWLPESA 353 (837)
Q Consensus 342 ~~~~-~~~~pesp 353 (837)
..++ .+++||++
T Consensus 170 ~~~~~~~~~~~~~ 182 (392)
T PRK10473 170 VLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHcCCCC
Confidence 4444 44577753
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=223.01 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~ 260 (837)
.+++.++..+....+....+.+.++++.+..+.+|+.+.|.+++.++.+++|+++||+|||++++++.++++++++++++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~ 87 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF 87 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 34556666665555666666778999999999999999999999999999999999999999999999999999998888
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
+.+. ++.|+++|++.+.. +...+++.|++|+++|++++++.+....+|.++||.++|.+.+. .|+..+++.+...
T Consensus 88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~ 163 (393)
T PRK11195 88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIY 163 (393)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7764 78999999999998 88899999999999999999999999999999999999999875 4777777666554
Q ss_pred HHHHHHHhhccCCc
Q psy1725 340 LAFACICPWLPESA 353 (837)
Q Consensus 340 ~~~~~~~~~~pesp 353 (837)
++..+..+.+||++
T Consensus 164 ~~~~~~~~~l~~~~ 177 (393)
T PRK11195 164 LLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHhcCCCCc
Confidence 44445555678764
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=222.54 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccH
Q psy1725 186 MADSMEMTILSILS-PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY 264 (837)
Q Consensus 186 ~~~~~~~~~~~~~l-~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~ 264 (837)
++........-+.+ +.+.+++|++..+.+++.+.+.++..+..++.|+++||+|||++++.+.++.+++.+++++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~ 99 (400)
T PRK11646 20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEP 99 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccH
Confidence 33333334434443 45688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
+.+++.|++.|++.+.. +...+++.|++|+++|+++.++......+|..+||++++.+. ..+||+.|++.++..++..
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~ 178 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAA 178 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 99999999999998877 777888899999999999999999999999999999999998 6799999999876555443
Q ss_pred HH-HhhccC
Q psy1725 344 CI-CPWLPE 351 (837)
Q Consensus 344 ~~-~~~~pe 351 (837)
+. .+++||
T Consensus 179 i~~~~~~~~ 187 (400)
T PRK11646 179 AFNAWLLPA 187 (400)
T ss_pred HHHHHhCCc
Confidence 33 334554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=223.12 Aligned_cols=145 Identities=16% Similarity=0.203 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy1725 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272 (837)
Q Consensus 193 ~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~ 272 (837)
...++.+|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 556788999999999999999999999999999999999999999999999999999998888888 7899999999999
Q ss_pred HHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHHH
Q psy1725 273 LVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL--GWKWLLALSTAPL 339 (837)
Q Consensus 273 l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~--gWr~~f~i~~i~~ 339 (837)
+.|++.+.. +.....+.|+++ ++|++++++.+.+..+|..+++.+++.+.+.. +||+.|.+.++..
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999999887 556666788886 68999999999999999999999998887654 3999987766543
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=216.48 Aligned_cols=180 Identities=19% Similarity=0.275 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~ 252 (837)
.++..+.+..++..+..+..+.+++..+.+.+|+|+|+.|.+++.++..+..++.-++.|.+.||||.|++...++++..
T Consensus 11 ~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~ 90 (417)
T COG2223 11 IARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLL 90 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHH
Confidence 34455556666666777778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccHH---HHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--
Q psy1725 253 YYGILSSLAPSYT---WMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-- 327 (837)
Q Consensus 253 i~~i~~a~a~n~~---~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-- 327 (837)
+..+..+++.+++ ++++++.++|++.+...++++.++.++||+++|.++|+.. ..++|..+..+++..+....+
T Consensus 91 IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~ 169 (417)
T COG2223 91 IPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFL 169 (417)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhH
Confidence 9999999997555 9999999999998888999999999999999999999999 888898888888888887778
Q ss_pred -hHHHHHHHHHHHHHHHHH-HhhccCCc
Q psy1725 328 -WKWLLALSTAPLLAFACI-CPWLPESA 353 (837)
Q Consensus 328 -Wr~~f~i~~i~~~~~~~~-~~~~pesp 353 (837)
||...++..++.++..+. ++.+.|.|
T Consensus 170 ~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 170 AWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 999988888766654444 44466654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=222.70 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CChHH-HHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-----GRKQA-LTLCAVLLFY 253 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-----GRr~v-l~~~~~l~~i 253 (837)
.+.+.++..+......+..+|...++.|.+..+++.. +...+.+ ++.+++|+++||+ |||+. ++++.++.++
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~ 93 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence 3444556677777788888999999999999999886 4444444 6899999999999 99885 6677777778
Q ss_pred HHHHHHhc---ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCh
Q psy1725 254 YGILSSLA---PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP-TLGW 328 (837)
Q Consensus 254 ~~i~~a~a---~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~-~~gW 328 (837)
+.+++++. ++++.+.+.|++.|++.+.. +...++..|++|+++|+++.++...+..+|.++++.+++.+.+ ..||
T Consensus 94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GW 173 (491)
T PRK11010 94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGW 173 (491)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCH
Confidence 88888776 47888999999999998887 7788888999999999999999999999999999999999988 5799
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 329 KWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 329 r~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
|+.|++.++..++..+..+++||++
T Consensus 174 r~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 174 QGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999998877666666666678764
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=218.73 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc
Q psy1725 184 CWMADSMEMTILSILS-PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP 262 (837)
Q Consensus 184 ~~~~~~~~~~~~~~~l-~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~ 262 (837)
..++.........+.+ +.+++++|++..+.++..+.+.++..+++++.|+++||+|||++++++.++.+++.++.++++
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~ 94 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555554 456788999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q psy1725 263 SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLA 341 (837)
Q Consensus 263 n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~ 341 (837)
|++.++++|++.|.+.+.. +....++.|..|+++|+++.++......+|.++||++++.+.+ .+||+.|++.++..++
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence 9999999999999877776 6777888999999999999999999999999999999998875 6999999988876655
Q ss_pred HHHHH-hhccCC
Q psy1725 342 FACIC-PWLPES 352 (837)
Q Consensus 342 ~~~~~-~~~pes 352 (837)
..+.. +++||+
T Consensus 174 ~~i~~~~~~~~~ 185 (395)
T PRK10054 174 PLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHhcc
Confidence 54433 446554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=217.69 Aligned_cols=197 Identities=13% Similarity=0.149 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~ 252 (837)
++|..+....+...+. .....++...+.+++++|++..+.+++.++. ..++.++++.|+++||+|||++++++.+++.
T Consensus 25 ~Rw~~lva~~~~~~~~-g~~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICT-SFMYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3565544433333332 3334566777899999999999999998874 4556788889999999999999999999999
Q ss_pred HHHHHHHhc------ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q psy1725 253 YYGILSSLA------PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACF-EVLLALIVMP 324 (837)
Q Consensus 253 i~~i~~a~a------~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~l-gp~l~~~l~~ 324 (837)
++.++++++ ++++.+++.|++.|+|.+.. +.+...+.+|+| ++||++.++...+.++|.++ +++..+++.
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~- 180 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS- 180 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999998 79999999999999999888 777777899986 88999999999999999975 555566654
Q ss_pred ccChHHHHHHHHHHHHHHHHH-HhhccC--CcchhccCCChHHHHHHHHHHHh
Q psy1725 325 TLGWKWLLALSTAPLLAFACI-CPWLPE--SARYHVASGQPEKALATLREIAA 374 (837)
Q Consensus 325 ~~gWr~~f~i~~i~~~~~~~~-~~~~pe--sp~~l~~~~~~~~a~~~l~~~~~ 374 (837)
.+|++.|++.++.+++..++ ++++++ .+++...+++.++.++.+++..+
T Consensus 181 -~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~ 232 (591)
T PTZ00207 181 -DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK 232 (591)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence 36999888888755554443 344443 33444344444455554444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-21 Score=215.87 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhhCChHHH-HHHHHHHHHHHHHHHhc
Q psy1725 185 WMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIV-FLGMMLSSTFWGYVSDRYGRKQAL-TLCAVLLFYYGILSSLA 261 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~-~lg~~vg~li~g~lsd~~GRr~vl-~~~~~l~~i~~i~~a~a 261 (837)
.++.........+.++. +.+++|++..+.+++.+.+ .+++.+++++.++ +||+|||+.+ +.+.++..++.++.+++
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 55555665556666554 6789999999999997765 5577777766666 9999998875 45666667888888999
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQR--AKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~R--g~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~ 338 (837)
++++.+++.+.+.|...+.. +....+..|+.++++| +...++.+++..+|.++||++++.+.++.|||+.|++.++.
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~ 182 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA 182 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 99999876665554433444 6677777888776655 34567888999999999999999999889999999998876
Q ss_pred HHHHHHH-HhhccCCc
Q psy1725 339 LLAFACI-CPWLPESA 353 (837)
Q Consensus 339 ~~~~~~~-~~~~pesp 353 (837)
.++..+. ++++||++
T Consensus 183 ~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 183 FIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHhhcCccC
Confidence 6555444 44578764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=216.80 Aligned_cols=154 Identities=13% Similarity=0.032 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHH----HHHHHHHHHHHH
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQAL----TLCAVLLFYYGI 256 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl----~~~~~l~~i~~i 256 (837)
+.+.++..........+.+|.+.+++|++..+++++.+++.++..++++++|+++||+|||... .++..++.+ .
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 4456677777778889999999999999999999999999999999999999999999985433 222222222 3
Q ss_pred HHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q psy1725 257 LSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALS 335 (837)
Q Consensus 257 ~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~ 335 (837)
.+..+++++.+++.|+++|.+.+.. +...++..++ .++|+++.+....+..+|.+++|++++.+.+..|||+.|++.
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 4557889999999999999887776 7766666554 578999999999999999999999999999999999999887
Q ss_pred HHH
Q psy1725 336 TAP 338 (837)
Q Consensus 336 ~i~ 338 (837)
++.
T Consensus 165 ~~~ 167 (382)
T TIGR00902 165 TAG 167 (382)
T ss_pred HHH
Confidence 654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=224.96 Aligned_cols=152 Identities=19% Similarity=0.375 Sum_probs=139.1
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhhchH
Q psy1725 204 CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP--SYTWMLFLRGLVGFAIGCV 281 (837)
Q Consensus 204 ~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~--n~~~l~i~R~l~G~g~g~~ 281 (837)
.+++.+..+.+++.+.++.|+.+++++.|++.||||-|+++..+.++.++.+++..++. +++.+++.|+++|++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 46888999999999999999999999999999999999999999999999999988886 4457799999999999998
Q ss_pred -HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHHhh-ccCCcch
Q psy1725 282 -PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT-LGWKWLLALSTAPLLAFACICPW-LPESARY 355 (837)
Q Consensus 282 -~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-~gWr~~f~i~~i~~~~~~~~~~~-~pesp~~ 355 (837)
+....+.+.|.|++||++..++...+..+|.+++-.++|.+.+. .||++.||+.++.++++.+++++ ..|+|..
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 77777779999999999999999999999999999999999988 99999999999998888877765 6677753
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=213.64 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CChHH-HHHHHHHHHHHHHHHHhc---cc
Q psy1725 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-----GRKQA-LTLCAVLLFYYGILSSLA---PS 263 (837)
Q Consensus 193 ~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-----GRr~v-l~~~~~l~~i~~i~~a~a---~n 263 (837)
...++.+|.+.+|+|+|..+.++..+. .+...+ .+++|+++||+ |||+. ++.+.++.++...+.+++ .+
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 456778899999999999999999766 444454 89999999998 89886 567778888887788887 45
Q ss_pred HHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--------hHHHHHH
Q psy1725 264 YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG--------WKWLLAL 334 (837)
Q Consensus 264 ~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g--------Wr~~f~i 334 (837)
.+.+.+..++.|++.+.. +...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+ ||+.|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 666777788888887777 7788889999999999999999999999999999999999988877 9999999
Q ss_pred HHHHHHHHHHHHhh-ccCC
Q psy1725 335 STAPLLAFACICPW-LPES 352 (837)
Q Consensus 335 ~~i~~~~~~~~~~~-~pes 352 (837)
.++..++..+..++ .||+
T Consensus 163 ~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 98876665555444 5664
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=207.38 Aligned_cols=163 Identities=13% Similarity=0.021 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh----HHHHHHHHHHHHHHHHHHh
Q psy1725 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK----QALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr----~vl~~~~~l~~i~~i~~a~ 260 (837)
++..........+.+|.+.+|+|.|..++++..+++.++..++++++|+++||+||| +.+.++..+. ....+..
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~ 90 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHh
Confidence 455556667888899999999999999999999999999999999999999999984 3333222222 2233455
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
++|++.+++.|++.|++.+.. +...++..++ .++|+++.+....+..+|.++||++++++.++.|||..|++.++..
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~ 168 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGV 168 (382)
T ss_pred cccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 689999999999999988877 7666666766 4678888888888899999999999999999999999999877654
Q ss_pred HHHHHHHhhccC
Q psy1725 340 LAFACICPWLPE 351 (837)
Q Consensus 340 ~~~~~~~~~~pe 351 (837)
++..+..++.||
T Consensus 169 ~~~~~~~~~~~~ 180 (382)
T PRK11128 169 ASMLLGQLLRPT 180 (382)
T ss_pred HHHHHHHHccCC
Confidence 444433334444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=239.54 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH---HHhcccHHH
Q psy1725 192 MTILSILSPALHCDWQITR--YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL---SSLAPSYTW 266 (837)
Q Consensus 192 ~~~~~~~l~~i~~~~~~s~--~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~---~a~a~n~~~ 266 (837)
........+.+..+++.+. ...+++.+++.+++.++++++|+++||+|||++++++.++.+++.++ +..+++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (1146)
T PRK08633 26 LGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWL 105 (1146)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 3344445556666777654 44789999999999999999999999999999999998776655554 445578999
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cChHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT---------LGWKWLLALST 336 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~---------~gWr~~f~i~~ 336 (837)
++++|+++|++.+.. +...+++.|++|+++|++++++..++..+|.++|+++++++.+. .+|+|.+.+.+
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 185 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL 185 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 999999999999998 88889999999999999999999999999999999999998765 24555554444
Q ss_pred H-HHHHHHHHHhhccCCcc
Q psy1725 337 A-PLLAFACICPWLPESAR 354 (837)
Q Consensus 337 i-~~~~~~~~~~~~pesp~ 354 (837)
+ ..++.+++.+++||+|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 186 LAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HHHHHHHHHHHhcCcCCCC
Confidence 3 33334444455777654
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-21 Score=218.96 Aligned_cols=180 Identities=15% Similarity=0.160 Sum_probs=156.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHH
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAV 249 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~ 249 (837)
.+.+-|.+++..+++.....--...++...+.++++|+.+..+++|+.++......+.+++.+.+.||||.|.+.+++.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 44567888888877777777777777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHH-HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy1725 250 LLFYYGILSSLAPSYTWMLF-LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG 327 (837)
Q Consensus 250 l~~i~~i~~a~a~n~~~l~i-~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g 327 (837)
+..++.++.++++|++++++ .-++.|+|.|.. .+...++..++ +++|+.+.|+...+.++|.++-|.+...+.+.+|
T Consensus 120 v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G 198 (509)
T KOG2504|consen 120 VAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG 198 (509)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC
Confidence 99999999999999988877 566679999998 66666667555 6899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q psy1725 328 WKWLLALSTAPLLAFACICPWLP 350 (837)
Q Consensus 328 Wr~~f~i~~i~~~~~~~~~~~~p 350 (837)
||+.+++.+.+.+-.++....+.
T Consensus 199 ~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 199 WRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999988776655555554433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-19 Score=204.39 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAPSYTW-MLFLRGL 273 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~n~~~-l~i~R~l 273 (837)
+.....+.+++|++..+.+|+.+.|.+...+..+++|+++|| +|||++++++.++++++.++++++++... ++++|++
T Consensus 35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l 114 (489)
T PRK10207 35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGT 114 (489)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 344556688999999999999999999999999999999999 99999999999999999999999987555 5589999
Q ss_pred HHhhhchH-HHHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhcc
Q psy1725 274 VGFAIGCV-PQSVTLYAEFLPSK--QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP 350 (837)
Q Consensus 274 ~G~g~g~~-~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~p 350 (837)
+|+|.|.. +...++++|.+|++ +|+.+.+++..+.++|.++||.+++++.++.||||.|++.++..++.++.+.+.+
T Consensus 115 ~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 115 IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999998 88888999999887 4578999999999999999999999999999999999997654333333333343
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=234.98 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHH---HHHHHHHHH
Q psy1725 181 TGLCWMADSMEMTILSILS-PALHCDWQITR-YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTL---CAVLLFYYG 255 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l-~~i~~~~~~s~-~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~---~~~l~~i~~ 255 (837)
-++..+.+.+....+.... ..+..+.+.+. ...++..+++.+++.+++++.|+++||||||+++.. ..+++.+..
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~ 99 (1140)
T PRK06814 20 QFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALA 99 (1140)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333 34444554433 457888999999999999999999999999997533 333344444
Q ss_pred HHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 256 ILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 256 i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
+.+..++|++.++++|+++|++.+.. +...+++.|++++++|++++++.+++..+|.++||++++++....+|++.|++
T Consensus 100 ~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 100 IYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44445689999999999999999988 99999999999999999999999999999999999999999999999999966
Q ss_pred HHHHHHHHHHHHhhccCCc
Q psy1725 335 STAPLLAFACICPWLPESA 353 (837)
Q Consensus 335 ~~i~~~~~~~~~~~~pesp 353 (837)
.++.+++.+++.+++|+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 180 LMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred HHHHHHHHHHHHhhCCCCC
Confidence 6666666666666677654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=199.10 Aligned_cols=171 Identities=20% Similarity=0.135 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----CChH-HHHHHHHHHHHH
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-----GRKQ-ALTLCAVLLFYY 254 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-----GRr~-vl~~~~~l~~i~ 254 (837)
....++..+........++|.+-++.|++.++++++..+... .+..+++|+++||+ |||+ +++++.++.+++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~ 81 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS 81 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence 345577788888888999999999999999999999777776 58999999999999 8765 788888888888
Q ss_pred HHHHHhc---ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChH
Q psy1725 255 GILSSLA---PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT-LGWK 329 (837)
Q Consensus 255 ~i~~a~a---~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-~gWr 329 (837)
..+.++. .+++.+++..++.|++.+.. +...+++.|+.|+++|+++.++...+..+|.++++.+++.+.+. .|||
T Consensus 82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 8888887 35777888888888877777 78888899999999999999999999999999999999988875 5999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 330 WLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 330 ~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
+.|++.++..++..+..+++||++
T Consensus 162 ~~f~i~a~~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 162 NTYLLMAGLMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999998876666555556677764
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=203.07 Aligned_cols=165 Identities=7% Similarity=0.029 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-hHHHHHHHHHHHHHHHHHH
Q psy1725 182 GLCWMADSMEMTIL-SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR-KQALTLCAVLLFYYGILSS 259 (837)
Q Consensus 182 ~l~~~~~~~~~~~~-~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR-r~vl~~~~~l~~i~~i~~a 259 (837)
++..++......+. ++..+.+.+++|++..+++++.+++.++..++++++|+++||+|| |+++.++.++..+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~ 87 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555 555667778899999999999999999999999999999999965 8899999999989999999
Q ss_pred hcccHHHHHHHHHHHHhhhchH-HHHHHHH----H----hccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 260 LAPSYTWMLFLRGLVGFAIGCV-PQSVTLY----A----EFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 260 ~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i----~----e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
+.++++.+++.|++.|++.+.. +...++. . |......|.+..| .+|.++||++++.+.....|++
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~ 161 (418)
T TIGR00889 88 QVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ 161 (418)
T ss_pred HhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH
Confidence 9999999999999999987765 5444432 2 3333334444444 3688888888887744334654
Q ss_pred HHHHHHHHHHHHHHHHhhccCCc
Q psy1725 331 LLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 331 ~f~i~~i~~~~~~~~~~~~pesp 353 (837)
|++.++..++..+..+++||+|
T Consensus 162 -f~~~~~~~~~~~~~~~~~~e~~ 183 (418)
T TIGR00889 162 -LYITAGSSALLGVFALTLPDIP 183 (418)
T ss_pred -HHHHHHHHHHHHHHHhcCCCCC
Confidence 4455554444445556688875
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=197.32 Aligned_cols=168 Identities=14% Similarity=0.114 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH--
Q psy1725 182 GLCWMADSMEMTILSILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS-- 258 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~-- 258 (837)
...+++.........+.+|.. .+++|.+..+.+++.+++.++..++++++|+++||+|||++++.+.+...+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~ 87 (396)
T TIGR00882 8 GLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFI 87 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666676654 56799999999999999999999999999999999999999998877765544332
Q ss_pred -Hhcc-----cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHH
Q psy1725 259 -SLAP-----SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWL 331 (837)
Q Consensus 259 -a~a~-----n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~ 331 (837)
.+.+ ....+++.|++.|++.+.. +....+..|.. ++++...+.......+|.++||++++.+.+ .+||+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~ 164 (396)
T TIGR00882 88 YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIV 164 (396)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHH
Confidence 1222 2344567788888887776 55555556643 334556677778888999999999998765 599999
Q ss_pred HHHHHHHHHHHHHHHhh-ccCC
Q psy1725 332 LALSTAPLLAFACICPW-LPES 352 (837)
Q Consensus 332 f~i~~i~~~~~~~~~~~-~pes 352 (837)
|++.++..++..++.++ .||+
T Consensus 165 f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 165 FWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 99988776666555544 4443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-19 Score=202.61 Aligned_cols=163 Identities=15% Similarity=0.042 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH---h
Q psy1725 185 WMADSMEMTILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS---L 260 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a---~ 260 (837)
.++.....+...+.++ .+.+++|++..+.+++.+++.++..++++++|+++||+|||++++++..+.+++..... .
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 98 (420)
T PRK09528 19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443344444444 55666999999999999999999999999999999999999999887776655443221 1
Q ss_pred ccc-----HHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 261 APS-----YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 261 a~n-----~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
++. ....++++++.|.+.... +....+. +.. .++++...+.......+|..++|++++.+.+ .+||+.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~ 175 (420)
T PRK09528 99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHH
Confidence 111 111222333333322222 2222222 222 3467778888889999999999999998876 499999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy1725 335 STAPLLAFACICPWLP 350 (837)
Q Consensus 335 ~~i~~~~~~~~~~~~p 350 (837)
.++..++..+..++++
T Consensus 176 ~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 176 GSGSALILLVLLFFAK 191 (420)
T ss_pred HHHHHHHHHHHHhccc
Confidence 8877666655555543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=220.97 Aligned_cols=174 Identities=14% Similarity=0.214 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
+..++..+......+..+..++.++++|+++..+.+++.+.|.++++++.++.++++||+|||+++.+++++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 44456777777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc---------------------------------------------------cHHHHHHHHHHHHhhhchH-HHHHH
Q psy1725 259 SLAP---------------------------------------------------SYTWMLFLRGLVGFAIGCV-PQSVT 286 (837)
Q Consensus 259 a~a~---------------------------------------------------n~~~l~i~R~l~G~g~g~~-~~~~~ 286 (837)
++++ .+..++++|+++|+|.+.. +.+.+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 2556789999999999998 88889
Q ss_pred HHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------ChHHHHHHHHHHHHHHHH
Q psy1725 287 LYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL----------------------GWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 287 ~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~----------------------gWr~~f~i~~i~~~~~~~ 344 (837)
++.|++|+++|+++++++..+..+|+++|+++++++.+.+ .||..|++.++++++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887532 166667777777766666
Q ss_pred HHhhccCC
Q psy1725 345 ICPWLPES 352 (837)
Q Consensus 345 ~~~~~pes 352 (837)
.++++|++
T Consensus 276 ~l~~~p~~ 283 (633)
T TIGR00805 276 PFFFFPKA 283 (633)
T ss_pred HHHhCccc
Confidence 66667765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-18 Score=196.42 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCC-hHHHHHHHHHHHHHHHHHHhccc------H
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGR-KQALTLCAVLLFYYGILSSLAPS------Y 264 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GR-r~vl~~~~~l~~i~~i~~a~a~n------~ 264 (837)
....+.+.+++|++..+.+++.++..+..++..++.|+++|| +|| |+.++.+.++++++.+++..+++ .
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 345667788999999999999999999999999999999997 687 56788888899988888887764 4
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------cccChHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLDCFWALGACFEVLLALIVM-------PTLGWKWLLALS 335 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-------~~~gWr~~f~i~ 335 (837)
..+++.+++.|++.+.. .+..++..|+. ++++|++..++...+..+|.++++.+.+.+. +..+||+.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 56677888888888877 66667778887 5789999999998888888877776655543 245899999888
Q ss_pred HHHHHHHHHHH-hhccCC
Q psy1725 336 TAPLLAFACIC-PWLPES 352 (837)
Q Consensus 336 ~i~~~~~~~~~-~~~pes 352 (837)
++.+++..++. ++.+|.
T Consensus 180 ~~l~~~~~~~~~~~~~e~ 197 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKER 197 (437)
T ss_pred HHHHHHHHHHHHcCCEec
Confidence 87666555443 446664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-17 Score=186.20 Aligned_cols=168 Identities=11% Similarity=0.101 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHH
Q psy1725 183 LCWMADSMEMTILSILSPAL-HCD--WQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~i-~~~--~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~ 258 (837)
+..+...+....+.+.+|.+ .++ +|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~ 96 (475)
T TIGR00924 17 FVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML 96 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555 445 89999999999999999999999999999999 899999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 259 SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQ---RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 259 a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
+++++.+.++++|++.|+|.|.. +...++++|++|+++ |+.+.+++..+..+|.++||++++.+.++.|||+.|++
T Consensus 97 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 97 AMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred HhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 99999999999999999999988 888888999998764 88899999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHhhcc
Q psy1725 335 STAPLLAFACICPWLP 350 (837)
Q Consensus 335 ~~i~~~~~~~~~~~~p 350 (837)
.++..++..+.+++.+
T Consensus 177 ~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 177 AAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 8765444444444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=186.06 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q psy1725 191 EMTILSILSPALHCDWQITRYQ-QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLF 269 (837)
Q Consensus 191 ~~~~~~~~l~~i~~~~~~s~~~-~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i 269 (837)
-+.+.+.+.|.+.+|+|++.++ .+.+.++|+.++++++++.|.++||+|.|+++.++++.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH---HHHHHHHHH
Q psy1725 270 LRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA---PLLAFACIC 346 (837)
Q Consensus 270 ~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i---~~~~~~~~~ 346 (837)
.|++.|++.|+......++..|+|+++|+++.+++.++..+|.++++++++. ....|||+.+.+.-+ ...+.+++.
T Consensus 121 ~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 121 MEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777888999999999999999999999999999999999 456799997755543 444555666
Q ss_pred hhccCCcch
Q psy1725 347 PWLPESARY 355 (837)
Q Consensus 347 ~~~pesp~~ 355 (837)
+++|..++.
T Consensus 200 ~~LP~~~~s 208 (511)
T TIGR00806 200 LFLKRPKRS 208 (511)
T ss_pred HhCCCCchh
Confidence 778855443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-17 Score=173.23 Aligned_cols=148 Identities=19% Similarity=0.178 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH
Q psy1725 177 LSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI 256 (837)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i 256 (837)
....+....++-++......+.+|.+++.|+++..+.+++...|+.|+.+++++.|.+.+|+|+|..++.++.++++++.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445555667777778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 257 LSS---LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 257 ~~a---~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
+.. ...++..++++-|+.|.|.+.. +.+.++++.+-++++-...+.+.+...++|.++||++++.+..
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 884 6679999999999999999999 9999999999999999999999999999999999999998754
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=181.05 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=123.9
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchHHHHH
Q psy1725 206 WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSV 285 (837)
Q Consensus 206 ~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~~~~~ 285 (837)
.+.+..-.|.+.+.|.++..+.++.||.++|+||||++++++++..++...+.+++.|+..+++.|++.|+..|-..+..
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Confidence 33345567899999999999999999999999999999999999999999999999999777777999999999999999
Q ss_pred HHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc---ccChHHHH---HHHHHHHHH-HHHHHhhccCC
Q psy1725 286 TLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP---TLGWKWLL---ALSTAPLLA-FACICPWLPES 352 (837)
Q Consensus 286 ~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~---~~gWr~~f---~i~~i~~~~-~~~~~~~~pes 352 (837)
++++|++++|+|+++++.++.++++|.++||.+||++.+ ..|--+.+ ++..+.+.. .....+++|||
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999987 22221222 222223333 44556679998
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-16 Score=180.98 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=124.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAP-SYTWMLFLRGLVG 275 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~-n~~~l~i~R~l~G 275 (837)
....+.+++|++..+.+++.+.+........+++|+++|| +|||++++.+.++++++.+++++++ +...++++|++.|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4456678999999999999988887777777899999999 5999999999999999999999975 5667788999999
Q ss_pred hhhchH-HHHHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 276 FAIGCV-PQSVTLYAEFLPSKQ--RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 276 ~g~g~~-~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
+|.|.. +...+++.|++|+++ |..+.+++..+..+|.++||++++++.++.|||+.|++.++..++.+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999987 777788899998643 45678899999999999999999999999999999999876444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-16 Score=177.34 Aligned_cols=174 Identities=16% Similarity=0.090 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHHHHHHH-HhhhhCChHHHHHHHHHH-HH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALT--TTIVFLGMMLSSTFWGY-VSDRYGRKQALTLCAVLL-FY 253 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i--~s~~~lg~~vg~li~g~-lsd~~GRr~vl~~~~~l~-~i 253 (837)
...++..++..+.......+.+|.+.+|.|.+.+++++. .++..+...+.+++++. .+||+|||+.+++.+.+. .+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 455667788999999999999999999999999999997 35667777777777744 789999998876655432 22
Q ss_pred HHHHHH-h--ccc-HHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 254 YGILSS-L--APS-YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 254 ~~i~~a-~--a~n-~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
.....+ + ..+ ...++..-++.++..+.. +..-++..|..++++++...+....+..+|.++|+.+.+.+.+..||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222222 2 222 233444445555565665 66666778888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q psy1725 329 KWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 329 r~~f~i~~i~~~~~~~~~~~~pe 351 (837)
|..|++.++..++..+..++++|
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999998876665555555544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-16 Score=182.07 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~ 260 (837)
++++.++..+...+...+++-+..+..-|+...+++.++..+...+..++.|.++||+.||++++.+.++.++..+..++
T Consensus 15 lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~ 94 (524)
T PF05977_consen 15 LWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAV 94 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777777778999999999999999999999999999999999999999887765554443
Q ss_pred c-----ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 261 A-----PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 261 a-----~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
. .+.+.+++.-++.|++.+.. +.-.+++.|++|+++...+.++.++...+..++||.+||.+....|-.+.|++
T Consensus 95 l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 95 LAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred HHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 2 47889999999999999998 88889999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy1725 335 STAPLLAFACICPWL 349 (837)
Q Consensus 335 ~~i~~~~~~~~~~~~ 349 (837)
.++.-++.++.+..+
T Consensus 175 nalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 175 NALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHc
Confidence 887555544444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-16 Score=174.51 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhCChHHHHHH-HHHHHHHHHHHHhccc
Q psy1725 189 SMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD----RYGRKQALTLC-AVLLFYYGILSSLAPS 263 (837)
Q Consensus 189 ~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd----~~GRr~vl~~~-~~l~~i~~i~~a~a~n 263 (837)
.+......+.++.+.+++|++....+++..+..+...+.+++.|.++| |+|||+.++++ .+...++.++.+++++
T Consensus 17 q~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~ 96 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD 96 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence 334444555566677899999999999999999999999999999999 59999998875 5556667677778777
Q ss_pred HHHHHH------------HHHHH-----HhhhchH-HHHHHHHHhccCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 264 YTWMLF------------LRGLV-----GFAIGCV-PQSVTLYAEFLPSKQR--AKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 264 ~~~l~i------------~R~l~-----G~g~g~~-~~~~~~i~e~~~~~~R--g~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
+..++. .+++. .++.... .+..++++|.+|+++| +.+.++.+.+..+|.++|+.++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~ 176 (477)
T TIGR01301 97 IGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSG 176 (477)
T ss_pred hhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542211 23333 3466666 7777888999998865 68999999999999999999998751
Q ss_pred --cc-------------cChHHHHHHHHHHHHHHHHH-HhhccCCc
Q psy1725 324 --PT-------------LGWKWLLALSTAPLLAFACI-CPWLPESA 353 (837)
Q Consensus 324 --~~-------------~gWr~~f~i~~i~~~~~~~~-~~~~pesp 353 (837)
+. .+-|+.|++.++..++..++ .+..+|.|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 177 LYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 11 15688999888755555444 44588865
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=172.27 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=137.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-H
Q psy1725 204 CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-P 282 (837)
Q Consensus 204 ~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~ 282 (837)
++.+-++.++|++.+.+.+...+..++.|++.||+|+|..+++|+++....+++.++.++++++++.|.++|+|.+.. +
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 345557889999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHhccCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccC
Q psy1725 283 QSVTLYAEFLPSK-QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 283 ~~~~~i~e~~~~~-~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pe 351 (837)
.+.++++|.+|.+ +|+.++|+.-.+.++|.++||.+||++.+..|.+..|.+.++..++-..+.+++-|
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 8999999999875 58999999999999999999999999999999999999999988887777776444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=158.27 Aligned_cols=171 Identities=19% Similarity=0.150 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHH
Q psy1725 175 AKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYY 254 (837)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~ 254 (837)
|..+..+.+..+.---..+..++.++++++|+|+|.+..++++++..+.+++.+++..++..|+|-++.+..++++.+++
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444445555556678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChHHHH
Q psy1725 255 GILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GWKWLL 332 (837)
Q Consensus 255 ~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gWr~~f 332 (837)
.++-... +...++.+-.+.|.|.+.. ....+.+.+.+| ++-+..++++.+...+|..+++.+.-.+.++. +||+..
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9998887 8889999999999999999 677777888886 77899999999999999999999998888776 799998
Q ss_pred HHHHHHHHHHHHHHh
Q psy1725 333 ALSTAPLLAFACICP 347 (837)
Q Consensus 333 ~i~~i~~~~~~~~~~ 347 (837)
.+-+.++++.+++++
T Consensus 169 ~~WAl~allAl~~Wl 183 (395)
T COG2807 169 GFWALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888887777766654
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=173.57 Aligned_cols=175 Identities=17% Similarity=0.046 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC-----ChHHHHHHHHHH
Q psy1725 177 LSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG-----RKQALTLCAVLL 251 (837)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G-----Rr~vl~~~~~l~ 251 (837)
...++...++..+..........+.+.+++|++..+++...++..+...+-++ +|+++|+++ ||+.++++.++.
T Consensus 27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 34555566777888744444556677778999999999999999999999777 999999998 888888888776
Q ss_pred H-HHHHHHHhcccHHHHH-HHHHHHHhhhchH-HHHHHHHHhccCcchhhHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 252 F-YYGILSSLAPSYTWML-FLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCV---VLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 252 ~-i~~i~~a~a~n~~~l~-i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~---~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
. +.....+..++...+. +++++.+++.+.. ..+-+++.|..+ +++.... ++......+|.++|+.++|.+.+.
T Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 4444444445655444 4889999999998 888899999998 5554433 333344558999999999999998
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 326 LGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
.+||..|++.++..++..+..++++|++
T Consensus 185 ~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 185 TLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999998877666666667788863
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-13 Score=158.46 Aligned_cols=152 Identities=12% Similarity=0.154 Sum_probs=122.4
Q ss_pred HHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHHHHHHHHHHhcc-cHHH
Q psy1725 190 MEMTILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-GRKQALTLCAVLLFYYGILSSLAP-SYTW 266 (837)
Q Consensus 190 ~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-GRr~vl~~~~~l~~i~~i~~a~a~-n~~~ 266 (837)
+....+...+| .+.+++|.+..+.+++.+.+.....++++++|+++||+ |||++++++.++..++.++++... +...
T Consensus 23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~ 102 (493)
T PRK15462 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF 102 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 33333444444 44667899999999999999999999999999999999 999999999999999988777643 2233
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSK--QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLA 341 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~ 341 (837)
++++-.+.++|.|.. +...++++|.+|++ +|..+.+++..+..+|..++|++.+++.+..|||+.|++.++..++
T Consensus 103 ~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 103 LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 444555555666666 66677889999875 7999999999999999999999999999999999999987664333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=157.61 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCC-hHHHHHHHHHHHHHHHHHHhccc------H
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGR-KQALTLCAVLLFYYGILSSLAPS------Y 264 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GR-r~vl~~~~~l~~i~~i~~a~a~n------~ 264 (837)
......+.+++|++...++++.++..+.-++..++.|.++|| +|| |+.++.+.+..++..+++-..++ .
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 345567788999999999999999999999999999999998 787 56677787888777766655553 3
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLDCFWALGACFEVLLALIVMP-------TLGWKWLLALS 335 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~-------~~gWr~~f~i~ 335 (837)
..+++...+.+.+.+.. .+-.++.+|+. ++++|++..++...+..+|..+++.++..+.. ..+|+..+++.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 45566666777666666 55557779988 56889988888888878877777665443321 34688777777
Q ss_pred HHHHHHHHHH
Q psy1725 336 TAPLLAFACI 345 (837)
Q Consensus 336 ~i~~~~~~~~ 345 (837)
++.+++..++
T Consensus 190 ~ii~~v~~~~ 199 (444)
T PRK09669 190 GLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHH
Confidence 6655444433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-14 Score=164.09 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=139.9
Q ss_pred HHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH---HHhcccHHHHHH
Q psy1725 194 ILSILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL---SSLAPSYTWMLF 269 (837)
Q Consensus 194 ~~~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~---~a~a~n~~~l~i 269 (837)
.....+|.+ ++++|.+..+..+..+...++..++.++.|+++||+|||++++++.++..+..+. ...+++...+++
T Consensus 268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (490)
T PRK10642 268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA 347 (490)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455654 4678988888888888999999999999999999999999998887655443332 233457888889
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChHHHHHHHHHHHHHHHHHHh
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gWr~~f~i~~i~~~~~~~~~~ 347 (837)
+|++.|++.+.. .....++.|++|++.|+.++++......++..++|.+.+++.+.. +|+..+++..+++++.++..+
T Consensus 348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 999999887766 556667789999999999999744434455677888888777654 588888777777777777777
Q ss_pred hccCCcchhccC-----CChHHHHHHHHHHH
Q psy1725 348 WLPESARYHVAS-----GQPEKALATLREIA 373 (837)
Q Consensus 348 ~~pesp~~l~~~-----~~~~~a~~~l~~~~ 373 (837)
++||+|+++..+ +|.+++++.++|++
T Consensus 428 ~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 428 TMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HhccccCCCCCCccccccchhhHHHHhhccc
Confidence 889999998755 88899999998886
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=147.09 Aligned_cols=169 Identities=20% Similarity=0.289 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC-ChHHHHHHHHHHHHHHHHHHhc
Q psy1725 183 LCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG-RKQALTLCAVLLFYYGILSSLA 261 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G-Rr~vl~~~~~l~~i~~i~~a~a 261 (837)
..+++..+......+.++..-++.|.|..++|.+.++..+...++++++|.++||++ +|+++.+..++.++........
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~ 88 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS 88 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666667778888888999999999999999999999999999999999986 6778878888887777778888
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHhccc---ChHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL-ALIVMPTL---GWKWLLALST 336 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l-~~~l~~~~---gWr~~f~i~~ 336 (837)
++++.+++.-.+..+...+. +..-++..+... +++.-.|-.-...++|.+++.+. ++.+.... +..+.+++.+
T Consensus 89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 166 (400)
T PF03825_consen 89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA 166 (400)
T ss_pred ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 99999888888888876666 666666655543 33333444445555666655433 22232222 2334566666
Q ss_pred HHHHHHHHHHhhccCCc
Q psy1725 337 APLLAFACICPWLPESA 353 (837)
Q Consensus 337 i~~~~~~~~~~~~pesp 353 (837)
+..++.....+.+|++|
T Consensus 167 ~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 167 ILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 55555555556678765
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-13 Score=152.81 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhCC-hHHHHHHHHHHHHHHHHHHhccc------HHH
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD----RYGR-KQALTLCAVLLFYYGILSSLAPS------YTW 266 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd----~~GR-r~vl~~~~~l~~i~~i~~a~a~n------~~~ 266 (837)
....+.+.+|++...++.+..+.-+--++..++.|.++| |+|| |+.++++.+..+++.+++-..++ +..
T Consensus 29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~ 108 (473)
T PRK10429 29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVF 108 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455667778999999999999999999999999999999 6698 77777888888877666544332 234
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLDCFWALGACFEVLLALIVMP-------TLGWKWLLALSTA 337 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~-------~~gWr~~f~i~~i 337 (837)
+++.-.+.+++.... .+-.++..|+. ++++|.+..++-..+..+|..+++.+...+.. ..+|++..++.++
T Consensus 109 ~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~ 188 (473)
T PRK10429 109 VCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIA 188 (473)
T ss_pred HHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 555566667777777 66667779998 68999998888666666665555544433211 1256666666555
Q ss_pred HHHH
Q psy1725 338 PLLA 341 (837)
Q Consensus 338 ~~~~ 341 (837)
..++
T Consensus 189 ~~~~ 192 (473)
T PRK10429 189 FFIV 192 (473)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=154.69 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhCC-hHHHHHHHHHHHHHHHHHHhc-c-------
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD----RYGR-KQALTLCAVLLFYYGILSSLA-P------- 262 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd----~~GR-r~vl~~~~~l~~i~~i~~a~a-~------- 262 (837)
....+.+.+.+|+++...+++..+.-+--++..++.|.++| |+|| |+.++++.++.+++.+++-.. +
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 34566777888999999999999999999999999999999 8995 555567888888888887766 4
Q ss_pred cHHHHHHHHHHHHhhhchH-HHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHH
Q psy1725 263 SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLP-SKQRAKCVVLLDCFWALGACFEVLLALIVMPT-------LGWKWLLA 333 (837)
Q Consensus 263 n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-------~gWr~~f~ 333 (837)
....+++.-++..++.... .+-.++..|+.+ +++|.+..+.-..+..+|.++...+.+.+.+. .+|++..+
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~ 181 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL 181 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence 2233566677777887777 666777899997 57999999998888888887666666555421 16888888
Q ss_pred HHHHHHHHHHHHHhh-ccC
Q psy1725 334 LSTAPLLAFACICPW-LPE 351 (837)
Q Consensus 334 i~~i~~~~~~~~~~~-~pe 351 (837)
+.++..++..++..+ .+|
T Consensus 182 v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 182 VLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHhhhhhheeee
Confidence 887766655544443 565
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-13 Score=143.42 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1725 704 TQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYT 783 (837)
Q Consensus 704 ~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (837)
.+..........+..+|++++++++||+|+|+++.++..++.+..+++.... .. .....+++.+++....+|..+...
T Consensus 178 ~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~-~~-~~~~~~~l~g~~~s~i~P~~~s~a 255 (310)
T TIGR01272 178 DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH-GY-VAMWFVLALGLFNSIMFPTIFSLA 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666778889999999999999999988888777766654443332 22 222344456677788899999999
Q ss_pred cccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHH
Q psy1725 784 PEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVA 832 (837)
Q Consensus 784 ~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 832 (837)
.+.+|.+ .+++.++. .++.+|+++.|.+.|.+.|. +...++++...+
T Consensus 256 ~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 256 LNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred Hhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9988864 35666764 67889999999999999886 666776654443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-11 Score=136.98 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=96.6
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHHHHH--H-----HhhhhHHHHHHHHHHHHHh
Q psy1725 703 NTQDYMDLLWTTLAEFPGIFATIFVIEKFGRK--RTMAVQFVIFTACVSFLFI--C-----TQSRAYLTVTLFVARGIIA 773 (837)
Q Consensus 703 ~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr--~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~ 773 (837)
..+.....+...+..++|.++.+++.||+|-| ++++++.....++++.-.+ . .++.....+..++.+.+.+
T Consensus 316 ~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G 395 (477)
T PF11700_consen 316 TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMG 395 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhh
Confidence 44556677788899999999999999999999 7777776666444444332 0 2334445556667777888
Q ss_pred hhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcch
Q psy1725 774 GVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSL 822 (837)
Q Consensus 774 ~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~ 822 (837)
+..+..-.+.+|+.|+...+.-+|+....++..++++|.+++.+.+.++
T Consensus 396 ~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 396 GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999999999999999999999988743
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=136.34 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=94.0
Q ss_pred HHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCc
Q psy1725 712 WTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPL 791 (837)
Q Consensus 712 ~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~ 791 (837)
..-+.|++...++.++++|+|.|+.++++..++++=.+..++.. +...+...-.+-.+-.........=|+.+.+|++.
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl 345 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL 345 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH
Confidence 34478899999999999999999999999888888777766665 44455555555555555666667789999999999
Q ss_pred cchhhHHH-HHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHHhh
Q psy1725 792 RAVGVGTC-SAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVAAL 834 (837)
Q Consensus 792 r~~~~g~~-~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 834 (837)
.++.+.+. +...+++.++.+.+.|.+.|. +...++++.+...+
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~ 390 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVL 390 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence 99999985 577789999999999999998 55667877777654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=125.03 Aligned_cols=135 Identities=24% Similarity=0.365 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcc
Q psy1725 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSK 295 (837)
Q Consensus 217 ~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~ 295 (837)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+....+++++.+++.+++.|++.+.. +....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999999999999999999999999999888 77778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh-ccC
Q psy1725 296 QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW-LPE 351 (837)
Q Consensus 296 ~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~-~pe 351 (837)
+|++..++......+|..++|.+++.+.+..+|++.|++.++..++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999899999999888765555544443 555
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-11 Score=138.85 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=79.2
Q ss_pred HhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccCCCC--
Q psy1725 714 TLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSR-AYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP-- 790 (837)
Q Consensus 714 ~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~-- 790 (837)
.+..+++..+.++++||+|+|+.+.++..++.+..+.+.+..... ....+..++...+.....+..+....|..|..
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455677888899999999999999999888777766665433222 22223333444455566778888888888753
Q ss_pred -----ccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 791 -----LRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 791 -----~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
.+|...|+.+....+|..+++.+.+.+.+.
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999887654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-11 Score=135.29 Aligned_cols=147 Identities=13% Similarity=0.066 Sum_probs=107.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCCh-HHHHHHHHHHHHHHHHHHhccc------HH
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGRK-QALTLCAVLLFYYGILSSLAPS------YT 265 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GRr-~vl~~~~~l~~i~~i~~a~a~n------~~ 265 (837)
..+..+.+.+|++...++++..+--+-=++.-++.|.++|| +||| |.++++.+..+++.+++-..++ ..
T Consensus 31 ~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 31 YMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 34556678889999999999999999999999999999995 7975 6666777788877776655553 33
Q ss_pred HHHHHHHHHHhhhchH-HHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHHH
Q psy1725 266 WMLFLRGLVGFAIGCV-PQSVTLYAEFLP-SKQRAKCVVLLDCFWALGACFEVLLALIVMPT-------LGWKWLLALST 336 (837)
Q Consensus 266 ~l~i~R~l~G~g~g~~-~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-------~gWr~~f~i~~ 336 (837)
.+++.-.+..++.... .+-.++..|+.+ ++||++..++...+..+|..+++++...+.+. .+|++...+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 4555556667777777 555566688887 79999999999999998888887776544322 24666665555
Q ss_pred HHHHHHH
Q psy1725 337 APLLAFA 343 (837)
Q Consensus 337 i~~~~~~ 343 (837)
+++++..
T Consensus 191 ii~~i~~ 197 (460)
T PRK11462 191 VVAFMML 197 (460)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=135.23 Aligned_cols=156 Identities=16% Similarity=0.098 Sum_probs=129.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHH
Q psy1725 169 GFGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCA 248 (837)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~ 248 (837)
+.-++||.++++.++..+.+++..-.+++........|+ +.+..-|..-+|++.+....+++-++.|++|-|..++++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 444679999999999999999988888888888888999 8888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc------cHH--HHHHHHHHHHhhhchHHHHHHHH-HhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 249 VLLFYYGILSSLAP------SYT--WMLFLRGLVGFAIGCVPQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 249 ~l~~i~~i~~a~a~------n~~--~l~i~R~l~G~g~g~~~~~~~~i-~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
++.+++..+-..+. .++ ..+++..+.+.++-..-...+-+ .-|+++++|..+..+-.++..+|.++|.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999999877663 233 44456666665555443332344 6799999999999999999999999999888
Q ss_pred HHHhcc
Q psy1725 320 LIVMPT 325 (837)
Q Consensus 320 ~~l~~~ 325 (837)
..+..+
T Consensus 197 pilV~~ 202 (480)
T KOG2563|consen 197 PILVPS 202 (480)
T ss_pred ceecCC
Confidence 887644
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=145.86 Aligned_cols=138 Identities=19% Similarity=0.154 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccC
Q psy1725 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLP 293 (837)
Q Consensus 215 ~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~ 293 (837)
+...+..++..+|.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++. +...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455667889999999999999999999999999999999999999999999999999999877776 778888899999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 294 SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 294 ~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
.+.|++++|+..+...+|.++||++++.+.+. +...+|++.++..++..++.+++|||.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999987654 456778888777777777777789984
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=135.59 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=129.1
Q ss_pred HHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q psy1725 198 LSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 198 ~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~ 276 (837)
..| .+++++|.+..+.++..+...++..++.+++|+++||+|||+.+..+.+...+.......+++.+.+++.|++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344 4567789999999998888888888999999999999999998888777766666666667888888899999998
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccC
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pe 351 (837)
+.|.. +.......|..|+ +||.+.++++....+|..+||.++|.+.+..+|++.|++.++..++.++..+++||
T Consensus 318 ~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 87776 6666667898874 69999999999999999999999999999899999999988887777777777765
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-13 Score=134.19 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLF 252 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~ 252 (837)
|...+..+|+..|-.++.....+....+...|.+++..+..++.++|..--.+-++++|++.|| +|-|+.-++-+.+..
T Consensus 42 r~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~ 121 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF 121 (459)
T ss_pred HHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence 4555666777777777777778888888899999998899999999999999999999999996 888877777666667
Q ss_pred HHHHHHH---hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 253 YYGILSS---LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 253 i~~i~~a---~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
++.+..+ ..+.+|+++++||+-|+|.-.. .....+..-|+..||-+.++|+.....-+|..+.-.+.+++.+
T Consensus 122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 7776655 4578999999999999987666 5555666899999999999999999999998877777666654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-10 Score=124.16 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=131.6
Q ss_pred HHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHH
Q psy1725 199 SPALHCDWQ----ITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAP--SYTWMLFLR 271 (837)
Q Consensus 199 l~~i~~~~~----~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~--n~~~l~i~R 271 (837)
.-++..+++ .++++..-+.+.|..-.-+.+.++|+++|| +|+|++++.+.++..++-++.+.+. +...++++-
T Consensus 45 ~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L 124 (498)
T COG3104 45 ILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGL 124 (498)
T ss_pred HHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 334455555 999988888888888888899999999998 6999999999999999999999994 889999999
Q ss_pred HHHHhhhchH-HHHHHHHHhccCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPSK--QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
++.++|.|.. +....+++|.+|++ +|-..++++.++.++|..++|++.+.+.++.||...|.+.++-..+.++..+.
T Consensus 125 ~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 125 ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999874 46678889999999999999999999999999999999888765555555555
Q ss_pred cc
Q psy1725 349 LP 350 (837)
Q Consensus 349 ~p 350 (837)
.+
T Consensus 205 ~~ 206 (498)
T COG3104 205 GR 206 (498)
T ss_pred cc
Confidence 44
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=139.09 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=126.8
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-H
Q psy1725 204 CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-P 282 (837)
Q Consensus 204 ~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~ 282 (837)
.+.+.+..+.+++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+.. .
T Consensus 255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~ 334 (420)
T PRK09528 255 ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLV 334 (420)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 334667778899999999999999999999999999999999999999999999999999999999999999988887 6
Q ss_pred HHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh-hccCC
Q psy1725 283 QSVTLYAEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP-WLPES 352 (837)
Q Consensus 283 ~~~~~i~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~-~~pes 352 (837)
....++.|.+|++.|+...+. ++++..+|.+++|.++|++.+..|||..|++.++..++..++.+ ++++.
T Consensus 335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677788999999999887655 67788899999999999999999999999988776555444443 34443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-11 Score=134.56 Aligned_cols=157 Identities=11% Similarity=0.151 Sum_probs=127.0
Q ss_pred HHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc----cH
Q psy1725 197 ILSPALHCDWQIT--------RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP----SY 264 (837)
Q Consensus 197 ~~l~~i~~~~~~s--------~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~----n~ 264 (837)
...+...++.+.+ ....+...++..++..++.++.|+++||+|||+++..+.++.+++..+...+. ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 3334445555543 35678999999999999999999999999999999999999998877776642 24
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcc------cChHHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLD-CFWALGACFEVLLALIVMPT------LGWKWLLALST 336 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l~~~------~gWr~~f~i~~ 336 (837)
+.+++.+++.|++.+.. +....++.|++|+++|+++.++.+ ....+|.++||+++|.+.++ .|||+.|++.+
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 66778999999998887 667778899999999999999997 67889999999999999876 46999999887
Q ss_pred HHHHHHH-HHHhhccCCc
Q psy1725 337 APLLAFA-CICPWLPESA 353 (837)
Q Consensus 337 i~~~~~~-~~~~~~pesp 353 (837)
+..++.. +..++++|+.
T Consensus 389 ~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 7655544 4445578764
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.7e-11 Score=129.14 Aligned_cols=163 Identities=27% Similarity=0.330 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChH-HHHHHHHHHHHHHHHHHhcccH
Q psy1725 187 ADSMEMTILSILSPALHCDW-QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ-ALTLCAVLLFYYGILSSLAPSY 264 (837)
Q Consensus 187 ~~~~~~~~~~~~l~~i~~~~-~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~-vl~~~~~l~~i~~i~~a~a~n~ 264 (837)
.............+.+.++. |.+..+.++..+...++..++.++++++.||+|||+ .+..+.++..++.+.....++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 265 (352)
T cd06174 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265 (352)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH
Confidence 33344444555566666654 889999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
+.+++..++.|++.+.. +....++.|..|+++|++..++.+....+|..+++.+.+.+.+..+|++.+++.++..++..
T Consensus 266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~ 345 (352)
T cd06174 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345 (352)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 99999999999999988 88888889999999999999999999999999999999999998999999999988777766
Q ss_pred HHHhhc
Q psy1725 344 CICPWL 349 (837)
Q Consensus 344 ~~~~~~ 349 (837)
+..+++
T Consensus 346 i~~~~~ 351 (352)
T cd06174 346 LLLLLL 351 (352)
T ss_pred HHheec
Confidence 655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=134.10 Aligned_cols=147 Identities=17% Similarity=0.124 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY--TWMLFLRGL 273 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~--~~l~i~R~l 273 (837)
....+.+.++++.+..+.++..+.+.++..++.++.|+++||+|||+.+.++.++..++.++..+.++. ..+++..++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL 304 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence 334455677889998889999999999999999999999999999999999999999988888877754 334567888
Q ss_pred HHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy1725 274 VGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAF 342 (837)
Q Consensus 274 ~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~ 342 (837)
.|++.+.. +....++.|.+|+++|+++.++.+....+|..++|.+++.+.+..||++.|++.++..++.
T Consensus 305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 89888777 6666777999999999999999999999999999999999999999999999887665543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=139.77 Aligned_cols=182 Identities=18% Similarity=0.136 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-hHHHHHHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPALHCD--WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR-KQALTLCAV 249 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~--~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR-r~vl~~~~~ 249 (837)
.+|..+.++.+..++.+...+++.+..-+..++ .+.+.+..||+.++..+|.+++++++|..+.|.|. |+.++++.+
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i 110 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL 110 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence 356667777777888888888777776555555 66678889999999999999999999999999995 777889999
Q ss_pred HHHHHHHHH-Hhc---c-cHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 250 LLFYYGILS-SLA---P-SYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 250 l~~i~~i~~-a~a---~-n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
+..+++++- +++ + ..+.++++|++.|+|.|.....-+++++-...++|.++++....+..+|.++||.++.++..
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 999998877 332 3 57889999999999999999999999999999999999999999999999999998877642
Q ss_pred --ccChH-----------HHHHHHHHHHHHHHHHHh-hccCCcc
Q psy1725 325 --TLGWK-----------WLLALSTAPLLAFACICP-WLPESAR 354 (837)
Q Consensus 325 --~~gWr-----------~~f~i~~i~~~~~~~~~~-~~pesp~ 354 (837)
..||. .+-|+.++..++.+++.+ ++.|.++
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 11222 234566655555444443 3666543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=130.05 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
.....|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.
T Consensus 239 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 239 LLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33446777788899999999999999999999999999999999999999988777777777778888888888888889
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
|++.++. +...++..|.+|+++|++..++.+....+|..+||.++|.+.++. +|...+++.+...++..+..+++
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9887766 777788899999999999999999999999999999999998764 56667776666555555554444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-09 Score=122.76 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCC-hHHHHHHHHHHHHHHHHHHhccc------H
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGR-KQALTLCAVLLFYYGILSSLAPS------Y 264 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GR-r~vl~~~~~l~~i~~i~~a~a~n------~ 264 (837)
...+-.+.+.+|++...+|.+..+-=+-=++.-++.|.++|| +|| ||.++.+.+.+++...++=.+++ .
T Consensus 33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~ 112 (467)
T COG2211 33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL 112 (467)
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence 334456678899999998888888888888999999999995 785 77788888999999999888874 3
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLP-SKQRAKCVVLLDCFWALGACFEVLLALIVMP-------TLGWKWLLALS 335 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~-------~~gWr~~f~i~ 335 (837)
...++.-.+.|++.+.. .+-.++..|+.+ ++||....+.-..+..+|.++..++...+.. ..||+..-++.
T Consensus 113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~ 192 (467)
T COG2211 113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 44566777888888888 666667778774 6899999999998888887666555544431 34677777776
Q ss_pred HHHHHHHHHHHhh-ccC
Q psy1725 336 TAPLLAFACICPW-LPE 351 (837)
Q Consensus 336 ~i~~~~~~~~~~~-~pe 351 (837)
++.+++..+..++ ..|
T Consensus 193 ~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 193 GVIGVILLLFCFFNVKE 209 (467)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 6665555554444 444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-10 Score=120.63 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=107.1
Q ss_pred cchhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q psy1725 702 LNTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYV 781 (837)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (837)
...+.....+...+..++|+++.+++.||+|-|+++..++++..+.++...+... ........++++.+.++.....-.
T Consensus 286 s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~-~~~f~i~gll~g~s~G~~qA~SRS 364 (438)
T COG2270 286 SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG-ELDFWILGLLVGTSLGGAQASSRS 364 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHhcchHHHHHHH
Confidence 3556677777888999999999999999999999999998888888777666553 333444456677788899999999
Q ss_pred hccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHHHHh
Q psy1725 782 YTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAA 833 (837)
Q Consensus 782 ~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 833 (837)
|..+++|++.-+..+|+.+..++..++++|.+++.+.+.+++....++.+..
T Consensus 365 y~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 365 YLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9999999999999999999999999999999999998876555444444433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=127.21 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=129.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~ 276 (837)
..++.+..+.|. ...++..+.+.++..++.++.|++.||+|||+.+..+.++.+++.++.++.+|.+.+++.+++.|+
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 314 (399)
T PRK05122 237 TFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF 314 (399)
T ss_pred HHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455565 345677788899999999999999999999999999999989988888888999889999999999
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCC
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPES 352 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pes 352 (837)
+.+.. +.....+.|.+|+++||++.++++....+|..+++.+.+.+.+..||++.|++.++..++..+..+++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98887 66666778999999999999999999999999999999999998999999999887666666555555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-10 Score=125.59 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=127.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhch
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGC 280 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~ 280 (837)
.+.+++|.++.+.++..+...+...++.++.|++.||+|||+++..+.++..+..++..+.++.+.+++.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999988888777888899999999999999999888877777766667778888888999999998887
Q ss_pred H-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccC
Q psy1725 281 V-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 281 ~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pe 351 (837)
. +....++.|..|+ +|+.+.++++....+|..++|.+++.+.+..||++.|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 7 6666777898875 66799999999999999999999999999899999999988877776666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=131.64 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHHHH--HHHHHHHHHHHHHhcccHHHHHH
Q psy1725 194 ILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--GRKQALTL--CAVLLFYYGILSSLAPSYTWMLF 269 (837)
Q Consensus 194 ~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--GRr~vl~~--~~~l~~i~~i~~a~a~n~~~l~i 269 (837)
.....++.+.+++|.+..+.++..+++.++..++.++.|.++||. ++|+...+ +.++.+++.+++++++|++.+++
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i 338 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI 338 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 334455666678899999999999999999999999999999973 33433333 34444556667778889999999
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChHHHHHHHHHHHHHHHH
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gWr~~f~i~~i~~~~~~~ 344 (837)
.+++.|++.+.. +...+++.|.+|+++++...++++....+|.++||.++|.+.+.. +|++.|++.++..++..+
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999998888 777788899999999999999999999999999999999998876 599999998876554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=127.41 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhc
Q psy1725 213 QALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEF 291 (837)
Q Consensus 213 ~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~ 291 (837)
.+.+.+++.++..++.+++|+++||+|||+.+..+.++..++.+..++.++.+.+++.+++.|++.+.. +.....+.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 456667778888899999999999999999999999988888888888889999999999999999888 7777777899
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 292 LPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 292 ~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
.|+++||+..++......+|..+||.++|.+.+..||++.|++.++..++..+..++
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766665555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-10 Score=124.12 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G 275 (837)
....+.+.++.+.+. .++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..++++.+.+++++++.|
T Consensus 236 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 236 GTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444455566543 456677788888999999999999999999999999999999888888999988899999999
Q ss_pred hhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q psy1725 276 FAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 276 ~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
++.+.. +.....+.|.+|+++||++.++++....+|..+||.+++.+.++.||++.|++.++..++..++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 998887 666677799999999999999999999999999999999999999999999998876665555444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-10 Score=128.31 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH--HHH
Q psy1725 183 LCWMADSMEMTILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI--LSS 259 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i--~~a 259 (837)
+..++...........+| .+++++|.+..+.++..+.+.++..++.+++|+++||+|||+.++....+..++.. ...
T Consensus 265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~ 344 (467)
T PRK09556 265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ 344 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH
Confidence 334444444444455566 45677999999999999999999999999999999999999887765544444332 223
Q ss_pred hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhc------------c
Q psy1725 260 LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWAL-GACFEVLLALIVMP------------T 325 (837)
Q Consensus 260 ~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~l-G~~lgp~l~~~l~~------------~ 325 (837)
..++...+.+.+++.|++..+. ........|.+|++.||.+.|+.+....+ |..++|.+.|.+.+ .
T Consensus 345 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~ 424 (467)
T PRK09556 345 HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTL 424 (467)
T ss_pred hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccc
Confidence 4467777778899999755444 44345567999999999999999888776 77999999999988 5
Q ss_pred cChHHHHHHHHHHHHHHHHHHh
Q psy1725 326 LGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
.+|++.|++..+..++..+..+
T Consensus 425 ~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 425 TGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cChHHHHHHHHHHHHHHHHHHH
Confidence 7899999887665555444443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=121.94 Aligned_cols=150 Identities=14% Similarity=0.037 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
.....|.+.+|+|.+..+.++..+...++..++.++.+++.||+|+|+.+.++.++..+..++.++++|.+.+++.+++.
T Consensus 224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~ 303 (382)
T TIGR00902 224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILH 303 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence 33344555577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLD-CFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACIC 346 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~ 346 (837)
|++.+.. +....++.+. |+++|+...++++ ...++|.++|++++|.+.++.|+ ..|++.++.+++.+++.
T Consensus 304 g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 304 CGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 9999998 7888888887 9999999999986 57889999999999999999886 56666666555444443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-09 Score=121.68 Aligned_cols=150 Identities=18% Similarity=0.129 Sum_probs=119.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA 277 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g 277 (837)
..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||.+.....+.......+....++.+.++++-++.|++
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 34455666899999999999999999999999999999999998765444443333333445677888888899999998
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
.+.. +.....+.+..| ++|+++++++.....+|..+||+++|.+.++.|+|..|++.++..++..+....
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 7776 555666778766 689999999999999999999999999999999999999988766665544433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=121.38 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChH--HH------HHHHHHHHHHHH
Q psy1725 186 MADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ--AL------TLCAVLLFYYGI 256 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~--vl------~~~~~l~~i~~i 256 (837)
++............|. +.+++|.+..+.++..+.+.++..++.+++|+++||+|||+ .. ..+.++..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (399)
T TIGR00893 225 FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3333444444445554 45678999999999999999999999999999999999995 11 111111222222
Q ss_pred HHHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHH
Q psy1725 257 LSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALS 335 (837)
Q Consensus 257 ~~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~ 335 (837)
.....++....+..-++.+++.+..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..| |++.|++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~ 384 (399)
T TIGR00893 305 ATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVV 384 (399)
T ss_pred HhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHH
Confidence 22223344445545555555555337788888999999999999999999999999999999999999888 99999988
Q ss_pred HHHHHHHHHHH
Q psy1725 336 TAPLLAFACIC 346 (837)
Q Consensus 336 ~i~~~~~~~~~ 346 (837)
++..++..+..
T Consensus 385 ~~~~~~~~~~~ 395 (399)
T TIGR00893 385 AALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHH
Confidence 77655554443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=120.72 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=124.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~ 276 (837)
..+|.+.++.|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.+... +...+....++.|+
T Consensus 221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~ 297 (381)
T PRK03633 221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGA 297 (381)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 346767777899999999999999999999999999999999999999988888777665443 23345567888888
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
+.+.. +.....+.|..|+++++...+.+..+..+|.++||.++|.+.++.+|++.|++.+...++..+..+..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 76666 77778889999988888888888889999999999999999999999999999887776665555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=123.08 Aligned_cols=158 Identities=20% Similarity=0.111 Sum_probs=134.4
Q ss_pred HHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 196 SILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 196 ~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
....|.+.++ +|.+....+++.+.+.++..++.++.+++.|+.++++.+..+.++.+++.++.++.++...+.++.++.
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF 322 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 3445666666 899999999999999999999999999999998888888888888888888888899988888899999
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH-HHHHHhhccCC
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLA-FACICPWLPES 352 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~-~~~~~~~~pes 352 (837)
|++.+.. +...+++.|..|++.||++.+++.....+|..+||.++|.+.+..|++..+++.++..++ ..+....+||.
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (417)
T PRK10489 323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL 402 (417)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 9988877 666778899999999999999999999999999999999999999999988877765444 44444556765
Q ss_pred c
Q psy1725 353 A 353 (837)
Q Consensus 353 p 353 (837)
+
T Consensus 403 ~ 403 (417)
T PRK10489 403 R 403 (417)
T ss_pred c
Confidence 3
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-12 Score=148.42 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
+..++..++.....+.....+.++++.|+++..+.|++.+.|-++..+..++..++.+|.-|-+.+-++.++.+++++++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 34444555557777778888999999999999999999999999999999999999999777788889999999998886
Q ss_pred Hhcc--------------------------------------------------cHHHHHHHHHHHHhhhchH-HHHHHH
Q psy1725 259 SLAP--------------------------------------------------SYTWMLFLRGLVGFAIGCV-PQSVTL 287 (837)
Q Consensus 259 a~a~--------------------------------------------------n~~~l~i~R~l~G~g~g~~-~~~~~~ 287 (837)
++-+ -+..++++.++.|+|.+.. +.+.++
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 6421 0234778999999999998 999999
Q ss_pred HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 288 YAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 288 i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
+-|.+++++-+..+|+..++..+|+++|.++|+.+.
T Consensus 166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ------------------------------------
T ss_pred eccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999775
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.6e-10 Score=127.79 Aligned_cols=176 Identities=16% Similarity=0.180 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
+....+..+........+....|.+.+++|.+..+.++....+.++..++.++.|+++||+|||+.+..+.++.+++.++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR00879 286 FLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365 (481)
T ss_pred HHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33333444444444444556678888899999888899999999999999999999999999999999998888877776
Q ss_pred HHh-----cc------cHHHHHHHHHHHHh-hhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 258 SSL-----AP------SYTWMLFLRGLVGF-AIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 258 ~a~-----a~------n~~~l~i~R~l~G~-g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
.++ .+ +...+....++.+. +.+..+....++.|.+|+++|+.++++......+|.+++|.+.+.+.++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 366 LGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred HHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 662 11 23333333333333 3333355566679999999999999999999999999999999999888
Q ss_pred cChHHHHHHHHHHHHHHHHHHh-hccCCc
Q psy1725 326 LGWKWLLALSTAPLLAFACICP-WLPESA 353 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~~~~-~~pesp 353 (837)
.+|++.|++.++.+++..++.+ +.||++
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cCccceehhHHHHHHHHHHHHheecccCC
Confidence 8999999988877666555544 467754
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=122.12 Aligned_cols=159 Identities=12% Similarity=0.127 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q psy1725 192 MTILSILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFL 270 (837)
Q Consensus 192 ~~~~~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~ 270 (837)
...+....|.+. +++|.+..+.++..+.+.++..+|.++.|+++||+|||+++.....+..+...+....+|...+.+.
T Consensus 221 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (394)
T PRK03699 221 QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYA 300 (394)
T ss_pred HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 334445566555 6789999999999999999999999999999999999999998888877777777778888888888
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
-++.|++.+.. +...+...|..+ +.++...+.......+|..++|.+.|.+.+..||+..+++.++..++..+...++
T Consensus 301 ~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 301 ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 88899887776 666666677765 4567778888888899999999999999999999999998887665555555544
Q ss_pred cC
Q psy1725 350 PE 351 (837)
Q Consensus 350 pe 351 (837)
+.
T Consensus 380 ~~ 381 (394)
T PRK03699 380 GF 381 (394)
T ss_pred HH
Confidence 43
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-09 Score=119.61 Aligned_cols=159 Identities=11% Similarity=0.175 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH-HHHHHHHHHHHHHHh-----ccc
Q psy1725 190 MEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT-LCAVLLFYYGILSSL-----APS 263 (837)
Q Consensus 190 ~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~-~~~~l~~i~~i~~a~-----a~n 263 (837)
..........|.+.+++|.+..+.++..+.+.++..++.++.|+++||+|||+.+. .+.+..++..+...+ .++
T Consensus 236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 33344455677777889999999999999999999999999999999999888764 333333443333332 346
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 264 YTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 264 ~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
.+.++++.++.|++.+...+....+.|.. +++||++.++.+....+|..++|.+++.+.+..||+..|++.++..++..
T Consensus 316 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~ 394 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA 394 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 77778889999988777633445567765 56899999999999999999999999999999999999999887766666
Q ss_pred HHHhhc
Q psy1725 344 CICPWL 349 (837)
Q Consensus 344 ~~~~~~ 349 (837)
++..|+
T Consensus 395 ~~~~~~ 400 (402)
T TIGR00897 395 FLTAFI 400 (402)
T ss_pred HHHHHh
Confidence 555554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=126.13 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=115.2
Q ss_pred HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHH
Q psy1725 195 LSILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--PSYTWMLFLR 271 (837)
Q Consensus 195 ~~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--~n~~~l~i~R 271 (837)
....+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..+..++.... .+.+.+.+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 345566665 5899999999999999999999999999999999999999998887777666544433 3444455566
Q ss_pred HHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
++.|+...+. .....++.|.+|+++||..+++......+|..+||+++|.+.+..||++.+++.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 6655433333 55566779999999999999999999999999999999999999999998876654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-10 Score=123.71 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHH--HHHHh--c
Q psy1725 187 ADSMEMTILSILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG--ILSSL--A 261 (837)
Q Consensus 187 ~~~~~~~~~~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~--i~~a~--a 261 (837)
.............|.+. +++|.+..+.++..+.+.++..++.++.|+++||+|||+.+.....+..+.. +...+ .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDS 309 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344445555554 7789999999999999999999999999999999999998876555544333 22222 2
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAP 338 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~ 338 (837)
++.+.+++..++.|++.+.. +...+.+.|.+|+++|+++.++ .+.+..+|..++|.+++.+.++.| |++.++..++.
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 310 GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 56777778888899888777 7788888999999999999987 456677899999999999999888 99887776654
Q ss_pred HH
Q psy1725 339 LL 340 (837)
Q Consensus 339 ~~ 340 (837)
.+
T Consensus 390 ~l 391 (394)
T TIGR00883 390 AL 391 (394)
T ss_pred HH
Confidence 43
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-09 Score=121.94 Aligned_cols=165 Identities=14% Similarity=0.067 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc--cHH-
Q psy1725 189 SMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP--SYT- 265 (837)
Q Consensus 189 ~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~--n~~- 265 (837)
...........|.+.+++|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++.+... +..
T Consensus 284 ~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~ 363 (479)
T PRK10077 284 FVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG 363 (479)
T ss_pred HhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCccc
Confidence 33344455567888889998887777888888889999999999999999999999999999988887766432 211
Q ss_pred -HHHHHHHHHHhhhch-H-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH------hcccChHHHHHHHH
Q psy1725 266 -WMLFLRGLVGFAIGC-V-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV------MPTLGWKWLLALST 336 (837)
Q Consensus 266 -~l~i~R~l~G~g~g~-~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l------~~~~gWr~~f~i~~ 336 (837)
..+.+-++.+++.+. . +....+++|.+|+++|+.++++......+|.++++.+.+.+ .+..+|++.|++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 443 (479)
T PRK10077 364 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 443 (479)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHH
Confidence 222333444444433 2 56677889999999999999999998888888886655443 35678999999887
Q ss_pred HHHHHHHHHH-hhccCCc
Q psy1725 337 APLLAFACIC-PWLPESA 353 (837)
Q Consensus 337 i~~~~~~~~~-~~~pesp 353 (837)
+.+++..++. ++.||+.
T Consensus 444 ~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 444 CMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 6655554444 4577764
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.9e-09 Score=116.39 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Q psy1725 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP-SYTWMLFLR 271 (837)
Q Consensus 193 ~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~-n~~~l~i~R 271 (837)
......+|.+.+++|.+..+.++..+.+.++..+|.+++|++.||+|||+.++.+..+..++.++....+ +...+. -
T Consensus 222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 299 (393)
T PRK09705 222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--A 299 (393)
T ss_pred HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--H
Confidence 3444455666667899999999999999999999999999999999999999998888777766554333 332222 2
Q ss_pred HHHHhhhchH-HHHHHHHHhccC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHH-Hh
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLP-SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAFACI-CP 347 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~~~~-~~ 347 (837)
++.|++.+.. +.......+..+ +++||+..++.+....++..++|.+.+++.+..| |...|++.++.+++..+. ..
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 4668887776 666666666664 6789999999999999999999999999998775 888888877655444443 45
Q ss_pred hccCCcc
Q psy1725 348 WLPESAR 354 (837)
Q Consensus 348 ~~pesp~ 354 (837)
+.||++.
T Consensus 380 ~~~~~~~ 386 (393)
T PRK09705 380 FAPARFP 386 (393)
T ss_pred hcccccc
Confidence 6788753
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=121.84 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=114.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHhhh
Q psy1725 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI-LSSLAPSYTWMLFLRGLVGFAI 278 (837)
Q Consensus 200 ~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i-~~a~a~n~~~l~i~R~l~G~g~ 278 (837)
+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.++.++.|++.
T Consensus 263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (405)
T TIGR00891 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV 342 (405)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999999999888776643333 3444567777777778888766
Q ss_pred chH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHH
Q psy1725 279 GCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALS 335 (837)
Q Consensus 279 g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~ 335 (837)
++. +....++.|.+|+++|++++++.+....+|..++|+++|.+.+..| |++.++..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 665 6677788999999999999999999999999999999999999888 88777653
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-08 Score=111.79 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-HHHHHHHHH----HHHHHHHHHHHHHHhhhhCChHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRY-QQALTTTIV----FLGMMLSSTFWGYVSDRYGRKQALTLCA 248 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~-~~~~i~s~~----~lg~~vg~li~g~lsd~~GRr~vl~~~~ 248 (837)
.+.+.....+-.+..++..+..........+.++.... ..+...... .+...+..+..|.++|++|||..+....
T Consensus 20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~ 99 (463)
T KOG2816|consen 20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL 99 (463)
T ss_pred hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence 44556666666777777777777777777776654322 223333333 4566778889999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhc--hH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIG--CV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 249 ~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g--~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
+...+..++..+.. +++++ +.|+..+ .. +.+.++++|....++|....++....+..|..++|.+++.+.+.
T Consensus 100 ~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 100 FGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 99888888777766 33333 5554333 23 77788899999999999999999999999999999999999988
Q ss_pred cChHHHHHHHHHHHHHHHH-HHhhccCCc
Q psy1725 326 LGWKWLLALSTAPLLAFAC-ICPWLPESA 353 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~-~~~~~pesp 353 (837)
.|.-.+|++..+..++..+ ..+++||+-
T Consensus 175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 175 LGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 8888899998876555544 455699873
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.7e-09 Score=121.18 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHH
Q psy1725 176 KLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG 255 (837)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~ 255 (837)
..+.+.++..+..++....+...+.++++.|+++.++.|++.+.|=+|..+...+..+..-|.=|-+.+-+++++.++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34566677778888888889999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHhcc-------------------------------------------------c--HH-HHHHHHHHHHhhhchH-H
Q psy1725 256 ILSSLAP-------------------------------------------------S--YT-WMLFLRGLVGFAIGCV-P 282 (837)
Q Consensus 256 i~~a~a~-------------------------------------------------n--~~-~l~i~R~l~G~g~g~~-~ 282 (837)
+++++-+ + ++ .++++.++.|+|.... +
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 9987630 0 22 4667899999999998 9
Q ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 283 QSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 283 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
.+.+++-|.+.+++-+..+|+..+...+|+++|-++|++...
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999854
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-08 Score=115.55 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=114.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh---c-ccHHHHHHHHHHHHh
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL---A-PSYTWMLFLRGLVGF 276 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~---a-~n~~~l~i~R~l~G~ 276 (837)
.+.+++|.+......+.....+...++.+++|+++||+|||++++.+.++..++.+.... . ++...+++.-++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456778888876666666667777888999999999999999998887766555443322 2 234444556677788
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHHHHHHHhhccCC
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLL-DCFWALGACFEVLLALIVMPTL--GWKWLLALSTAPLLAFACICPWLPES 352 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~lG~~lgp~l~~~l~~~~--gWr~~f~i~~i~~~~~~~~~~~~pes 352 (837)
+.+.. +...+++.|.+|.+.|+.+.++. ..+..+|..++|.+.+.+.+.. +|+..+...++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 87776 67778889999999999888885 4455689999999999987643 58888887777777666666667765
Q ss_pred c
Q psy1725 353 A 353 (837)
Q Consensus 353 p 353 (837)
.
T Consensus 436 ~ 436 (438)
T PRK09952 436 Q 436 (438)
T ss_pred c
Confidence 3
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=117.68 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=108.1
Q ss_pred HHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHH-HHHHHHHHHHHHHHHh--cccHHHH
Q psy1725 194 ILSILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--GRKQAL-TLCAVLLFYYGILSSL--APSYTWM 267 (837)
Q Consensus 194 ~~~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--GRr~vl-~~~~~l~~i~~i~~a~--a~n~~~l 267 (837)
.....+|.+- +++|.+..+.++..+.+.++..++.+++|+++||+ |||... +....+..++.++..+ ..+...+
T Consensus 271 ~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 350 (452)
T PRK11273 271 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVD 350 (452)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHH
Confidence 3444566554 45789988999999999999999999999999999 555433 2222333333332222 3455555
Q ss_pred HHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q psy1725 268 LFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGAC-FEVLLALIVMPTLGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 268 ~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~-lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~ 345 (837)
+++.++.|.+.... ........|.+|+++||.+.++.+....+|.. +||.+++.+.+..||++.|++.++.+++.++.
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~ 430 (452)
T PRK11273 351 MACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 430 (452)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55666666544333 33334558999999999999999888777755 58999999999999999999887765555444
Q ss_pred Hhh
Q psy1725 346 CPW 348 (837)
Q Consensus 346 ~~~ 348 (837)
..+
T Consensus 431 ~~~ 433 (452)
T PRK11273 431 LIV 433 (452)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=9e-09 Score=114.05 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=116.5
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHH
Q psy1725 197 ILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPS-YTWMLFLRGLV 274 (837)
Q Consensus 197 ~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n-~~~l~i~R~l~ 274 (837)
...|.+.++ +|.+..+.++..+.+.++..++.++.+++.||+|||+.+..+.++.+++.++.++.++ .+.+++..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 455666655 8999999999999999999999999999999999999999988888888888888874 88889999999
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL 326 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~ 326 (837)
|++.+.. +....++.|.+|+++|+...++.+....+|..++|.++|.+.+..
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999888 777788899999999999999999999999999999999987754
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=115.98 Aligned_cols=161 Identities=13% Similarity=0.028 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--C-ChHHHHHHHHHHHHH--HHHHHhc
Q psy1725 188 DSMEMTILSILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--G-RKQALTLCAVLLFYY--GILSSLA 261 (837)
Q Consensus 188 ~~~~~~~~~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--G-Rr~vl~~~~~l~~i~--~i~~a~a 261 (837)
.......+...+|.+. +++|.+..+.++..+.+.++..+|.+++|+++||+ + ||+......+...+. .++....
T Consensus 255 ~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK11663 255 VYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF 334 (434)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc
Confidence 3333344444555554 67899999999999999999999999999999999 3 334322222111111 1111122
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLL 340 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~ 340 (837)
.+...+.+..++.|++..+. ........|.+|+++||.++++.++...+|..++|.+.+.+.+..||+..|++.++.++
T Consensus 335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~ 414 (434)
T PRK11663 335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAG 414 (434)
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHH
Confidence 34444444555556543333 33344558999999999999999999999999999999999999999999998887766
Q ss_pred HHHHHHhh
Q psy1725 341 AFACICPW 348 (837)
Q Consensus 341 ~~~~~~~~ 348 (837)
+..+..+.
T Consensus 415 ~~~~~~~~ 422 (434)
T PRK11663 415 ISALLLLP 422 (434)
T ss_pred HHHHHHHH
Confidence 65554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-08 Score=114.13 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=119.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHH
Q psy1725 207 QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSV 285 (837)
Q Consensus 207 ~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~ 285 (837)
+.+....++..++..+...++.+..|++.||+|||+.+.++.++.++..++.+.++|.+.+++.+++.|++.... ....
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888999999999999999999999999999999998888888999999999999999987766 5566
Q ss_pred HHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q psy1725 286 TLYAEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACIC 346 (837)
Q Consensus 286 ~~i~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~ 346 (837)
.+..+..+++.++...+. ++....+|.+++++++|.+.+..||+..|++.++..++..++.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 666888888888877666 6788999999999999999998999999999887666555443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-08 Score=111.47 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=120.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA 277 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g 277 (837)
..+.+.+|.|.+..+.++..+...++..++.++.|++.||+|+|+.+..+.++.+++.++.+.+++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445567899999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLD-CFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~ 344 (837)
.+.. +....++.+. +++++++..++.. ....+|..+||.++|.+.+..|+ ..|+..++.+++.++
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 8887 6666777776 5667788888875 66778889999999999998887 466665555444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=112.99 Aligned_cols=136 Identities=22% Similarity=0.231 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHH
Q psy1725 187 ADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTW 266 (837)
Q Consensus 187 ~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~ 266 (837)
+............|.+.+++|.+..+.++..+.+.++..++.++.|+++||+|||+.+....+...+..++.....+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T TIGR00895 261 MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTL 340 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 33334444555667888899999999999999999999999999999999999995554444444333333333677888
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l 322 (837)
+++..++.|++.+.. +...+++.|.+|+++|+.+.++......+|..+||+++|.+
T Consensus 341 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 341 LLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 888999999998887 77888889999999999999999999999999999999875
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-08 Score=112.92 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
+...+|.+.++.|.+..+.+...+.+.++..++.+++|+++||+|||+.+..+.++..+..++....++.....+.-++.
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF 329 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 34456767777898988999999999999999999999999999999999988887776665554433222122222333
Q ss_pred Hh--hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 275 GF--AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 275 G~--g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
|+ +..+. .....++.|.+|++.||+++|+......+|..++|++.+.+.+..|+.+..++..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33 33333 44456679999999999999999999999999999999999988887765444443
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=116.09 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=127.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhc--cCCcchhccCCChHHHHHHHHHH
Q psy1725 295 KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL--PESARYHVASGQPEKALATLREI 372 (837)
Q Consensus 295 ~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~--pesp~~l~~~~~~~~a~~~l~~~ 372 (837)
++-...-+.....+.+|.++|..+++.+.+..|-|..+++..+..++..++..+. ..++.
T Consensus 56 ~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e------------------ 117 (485)
T KOG0569|consen 56 STLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFE------------------ 117 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHH------------------
Confidence 3445566777788899999999999999999999999988887666555444331 11100
Q ss_pred HhccCCcccccccccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 373 AADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQA 452 (837)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~ 452 (837)
++.++ =++.+-..+.....
T Consensus 118 --------------------------------------------~li~G-----------------R~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 118 --------------------------------------------MLILG-----------------RLIVGLACGLSTGL 136 (485)
T ss_pred --------------------------------------------HHHHH-----------------HHHHHHHhHHHHHH
Confidence 00000 01222233344455
Q ss_pred hhhccccccCcccccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHH-
Q psy1725 453 AYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEV- 531 (837)
Q Consensus 453 ~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 531 (837)
.-.|..|..|.++||..--+......+ |..++.
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~----------------------------------------------g~ll~~~ 170 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVI----------------------------------------------GILLGQV 170 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHH----------------------------------------------HHHHHHH
Confidence 556677888888887654443322222 222221
Q ss_pred -HHHHHhccCcchHHHHHhhhhhhHHHHhhhccccCCcchhhh-cCCHHHHHHHHHHHHHhcCCcccccccccccc
Q psy1725 532 -LLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVA-SGQPEKALATLREIAADNGKPMLLGRLVVDDS 605 (837)
Q Consensus 532 -~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 605 (837)
..-.++++...|++.+.+.++++++.++..+++||||+||.. |++++||++.++.+++.++.+++.++..++.+
T Consensus 171 ~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~ 246 (485)
T KOG0569|consen 171 LGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIE 246 (485)
T ss_pred HccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 223566788899999999999999999999999999999999 89999999999999998876655554444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=96.15 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=94.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC-----ChHHHHH-HHHHHHHHHHHHHhc-----c--------
Q psy1725 202 LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG-----RKQALTL-CAVLLFYYGILSSLA-----P-------- 262 (837)
Q Consensus 202 i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G-----Rr~vl~~-~~~l~~i~~i~~a~a-----~-------- 262 (837)
+..|++++....+...++.++... ..+.+|..||+.+ ||..+++ +.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456899998888888888877665 5788999999998 7765554 444444444433322 2
Q ss_pred cH-HH--HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy1725 263 SY-TW--MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG 327 (837)
Q Consensus 263 n~-~~--l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g 327 (837)
.+ +. ..+.-.+.|+|.+.. +...++++|..|+++|+++.++...+..+|.+++.++.+.+.+.++
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 22 22 233455568888888 7788888999999999999999999999999999999998876654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=114.31 Aligned_cols=150 Identities=20% Similarity=0.143 Sum_probs=133.7
Q ss_pred HHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 196 SILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 196 ~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
...+|.+. +++|.+...+|++.+++.+|..+|.++.+++.+++++++.+..+.++++++.+..+++++.+..++.-++.
T Consensus 238 ~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~ 317 (524)
T PF05977_consen 238 WALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA 317 (524)
T ss_pred HHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34566665 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~ 345 (837)
|++.... ....+.+.+..|++.||+.++++.+....+..+|.++.|.+.+..|-+..+.+.++..++..++
T Consensus 318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9998887 6777788999999999999999999999999999999999999999999998877644444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-08 Score=113.35 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc---ccHHHHH
Q psy1725 193 TILSILSPALHC-DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA---PSYTWML 268 (837)
Q Consensus 193 ~~~~~~l~~i~~-~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a---~n~~~l~ 268 (837)
.......|.+.+ .+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++.++..++..+. ++...+.
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (471)
T PRK10504 278 GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLP 357 (471)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 344455565554 588899999999999999999999999999999999999999998888877766654 3444455
Q ss_pred HHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 269 FLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 269 i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
+.-++.|++.+.. +.......+..|+++||.+.++.++...+|..+|+.+++.+.+..++
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677888888877 66677778999999999999999999999999999999988655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-08 Score=110.31 Aligned_cols=141 Identities=21% Similarity=0.228 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH----HHhcccH
Q psy1725 190 MEMTILSILSPALHC-DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL----SSLAPSY 264 (837)
Q Consensus 190 ~~~~~~~~~l~~i~~-~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~----~a~a~n~ 264 (837)
.....+....|.+.+ .+|.+..+.++....+.++..++.+++|+++||+|||++++.+.++..+..+. ....+++
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF 331 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 333445555666554 48999888999999999999999999999999999999988765544332221 1123455
Q ss_pred HHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 265 TWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLD-CFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 265 ~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
..+.+..++.|++.+.. +....++.|.+|+++|+.+.++.. .+..++..++|.+.+.+.+..|+++
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~ 399 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKA 399 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCch
Confidence 55555566677777666 555677799999999999999854 4455567789999999998888654
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=116.52 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc
Q psy1725 195 LSILSPALHCDWQITRYQQAL------------TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP 262 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~------------i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~ 262 (837)
.....|.+.++.|.+..+.+. ...+..++..++.+++++++||+|||++++++.++.+++.++.++..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 333467777788876432111 23344556677889999999999999999988888777666555432
Q ss_pred ----cHHHHHHHHHHHHhhh-chHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cC
Q psy1725 263 ----SYTWMLFLRGLVGFAI-GCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT----------LG 327 (837)
Q Consensus 263 ----n~~~l~i~R~l~G~g~-g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~----------~g 327 (837)
+...+...-+...++. +..+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+. .+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 1111111111112222 22255556679999999999999999999999999999999888763 34
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 328 WKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 328 Wr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
+...|++.++..++..+..+++|||.
T Consensus 467 ~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chHHHHHHHHHHHHHHHHheEeccCC
Confidence 55677777766555555556789985
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-07 Score=108.54 Aligned_cols=162 Identities=16% Similarity=0.204 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh--HHHHHHHHHHHHHHHHHHh--------
Q psy1725 191 EMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK--QALTLCAVLLFYYGILSSL-------- 260 (837)
Q Consensus 191 ~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr--~vl~~~~~l~~i~~i~~a~-------- 260 (837)
-.++++.....-.+++|++..+...+.-+-.+..++|++++|++.||+|.| ++++++++++.+..+...+
T Consensus 297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g 376 (477)
T PF11700_consen 297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG 376 (477)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 345555566666779999999999999999999999999999999999999 8999999988777666666
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAP 338 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~ 338 (837)
.++.+.+.+.-++.|++.|+. +..-++++|+.|+++.+..+|++....-....+||++-+.+.+..| -|+.++...+.
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~l 456 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVL 456 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 678889999999999999999 9999999999999999999999999999999999999999988766 88988888777
Q ss_pred HHHHHHHHhhccCC
Q psy1725 339 LLAFACICPWLPES 352 (837)
Q Consensus 339 ~~~~~~~~~~~pes 352 (837)
.++.++++++++..
T Consensus 457 f~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 457 FLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHhhccch
Confidence 77777777777654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-08 Score=111.53 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---C--ChHHHHHHHHHHHHHHHHHHhcc----cHHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY---G--RKQALTLCAVLLFYYGILSSLAP----SYTW 266 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~---G--Rr~vl~~~~~l~~i~~i~~a~a~----n~~~ 266 (837)
....+.+++++|+++.+.....++..+...+- +++|.++|.+ | ||+.++++.++..++.+..++.+ +...
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 44567889999999999999888888888765 5589999975 3 67777778777766666666544 4666
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFL--PSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~--~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
..++-++..+|.... ..+-+.+.|.. .++.||...+.......+|.+++..++|.+.+..++|+.|.+.++..++..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 667777778888888 77888888877 334588889999999999999999999999999999999999887666655
Q ss_pred HHHhh-ccC
Q psy1725 344 CICPW-LPE 351 (837)
Q Consensus 344 ~~~~~-~pe 351 (837)
+..++ .+|
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 55444 444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=110.62 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=103.3
Q ss_pred HHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC-ChHHHH-HHHHH-HHHHHHHHHh--cccHH
Q psy1725 192 MTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG-RKQALT-LCAVL-LFYYGILSSL--APSYT 265 (837)
Q Consensus 192 ~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G-Rr~vl~-~~~~l-~~i~~i~~a~--a~n~~ 265 (837)
........|. +.+++|.+..+.++..+.+.++..++.++.|+++||++ ||+..+ ..... ..++...... ..+..
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (379)
T TIGR00881 232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPL 311 (379)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHH
Confidence 3334444444 45678999999999999999999999999999999864 333222 22211 2222222222 33556
Q ss_pred HHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHH
Q psy1725 266 WMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLL 332 (837)
Q Consensus 266 ~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f 332 (837)
.+++..++.|+...+. .....+..|.+|+++||.+.++.+....+|..++|.+.|.+.++.|||+.|
T Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 312 MDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 6667777888765555 555667799999999999999999999999999999999999999999864
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.1e-08 Score=111.39 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=120.7
Q ss_pred HHHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH---HHhc-ccHHHHHHHHH
Q psy1725 198 LSPALHCDWQITRYQQALTTT-IVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL---SSLA-PSYTWMLFLRG 272 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s-~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~---~a~a-~n~~~l~i~R~ 272 (837)
..|.+.+++|.+..+.++... ...++..+|.+++|+++||+|||+.++++.++.++..++ .+.. ++...+.+.-+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 344556779999999999875 556899999999999999999988877766655554432 2333 45555555666
Q ss_pred HHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccC
Q psy1725 273 LVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPE 351 (837)
Q Consensus 273 l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pe 351 (837)
+..++.|.. +...+...+..+++.++...++.+....+|.++++.+.|.+.+..||+..|.+.++.++..++...++++
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766666655 5566777999999999999999999999999989889999999899999999888877777666666554
Q ss_pred C
Q psy1725 352 S 352 (837)
Q Consensus 352 s 352 (837)
+
T Consensus 405 ~ 405 (491)
T PRK11010 405 T 405 (491)
T ss_pred c
Confidence 3
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=114.04 Aligned_cols=137 Identities=20% Similarity=0.108 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHhhhchH-HHHHHHHHhc
Q psy1725 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSY--TWMLFLRGLVGFAIGCV-PQSVTLYAEF 291 (837)
Q Consensus 215 ~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~--~~l~i~R~l~G~g~g~~-~~~~~~i~e~ 291 (837)
+...++.+...++.++.+++.||+|||+++.++.++.+++.++..+.++. ...++.-++.+++.+.. +....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777889999999999999999999999999998888887654 44555666667776666 6677777999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 292 LPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 292 ~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
+|++.|+.++++.++...+|.+++|.+.+ + ...++...+++.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999988 4 345677788888877777777777889874
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=108.82 Aligned_cols=120 Identities=15% Similarity=0.204 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhhchH-HHHHH
Q psy1725 209 TRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP-SYTWMLFLRGLVGFAIGCV-PQSVT 286 (837)
Q Consensus 209 s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~-n~~~l~i~R~l~G~g~g~~-~~~~~ 286 (837)
+....++..+.+.++..++.+++++++||+|||+++..+.++.+++.++..+.+ +.+.+++..++.|++.+.. +...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888999999999999999999999999999998888887777653 6677778888899998887 77778
Q ss_pred HHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 287 LYAEFLP-------SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 287 ~i~e~~~-------~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
+++|..+ ++.+|.+.++.+....+|..+++.+.+.+.+..||
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888765 45689999999999999999999999998776665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=6e-08 Score=111.29 Aligned_cols=157 Identities=12% Similarity=0.024 Sum_probs=106.3
Q ss_pred HHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH---HHHHHHHh--cccHHHHHH
Q psy1725 196 SILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF---YYGILSSL--APSYTWMLF 269 (837)
Q Consensus 196 ~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~---i~~i~~a~--a~n~~~l~i 269 (837)
....|.+. +..|.+..+.++..+.+.++..++.+++|+++||+|+++....+..+.. ++.+.... ..+.+...+
T Consensus 271 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T TIGR00712 271 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMI 350 (438)
T ss_pred HHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 33455544 4578899999999999999999999999999999975432222322221 12222122 234444445
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHhcccChHHHHHHHHHHHH-HHHHHH
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALG-ACFEVLLALIVMPTLGWKWLLALSTAPLL-AFACIC 346 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG-~~lgp~l~~~l~~~~gWr~~f~i~~i~~~-~~~~~~ 346 (837)
.-++.|++..+. ........|.+|+++||.+.|+.+....+| .++||.+.|.+.++.||.+.|++.+...+ ..+..+
T Consensus 351 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 351 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred HHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 555666654333 333345689999999999999998877665 67899999999999999999988765444 444444
Q ss_pred hhccCC
Q psy1725 347 PWLPES 352 (837)
Q Consensus 347 ~~~pes 352 (837)
+++||.
T Consensus 431 ~~~~~~ 436 (438)
T TIGR00712 431 VVMIGE 436 (438)
T ss_pred HHHhhc
Confidence 557775
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.2e-08 Score=108.62 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=120.0
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHhhhchH-
Q psy1725 204 CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-PSYTWMLFLRGLVGFAIGCV- 281 (837)
Q Consensus 204 ~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-~n~~~l~i~R~l~G~g~g~~- 281 (837)
++.+.+....+++.+.+.+.....+++.|++.||+|+|+.+..+.++..++.++.+++ ++.+.+++..++.|+|.+..
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888999999999999999999998888888777765 57777788899999998887
Q ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh-hccCCc
Q psy1725 282 PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP-WLPESA 353 (837)
Q Consensus 282 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~-~~pesp 353 (837)
+.....+.+..|++.|+.+.+..+ ...+|..+||.++|.+.++.|-...|++.+...++.++..+ -+.|.|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 777778899999999999988665 55589999999999999999999999887654444443333 355554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-07 Score=103.42 Aligned_cols=159 Identities=19% Similarity=0.152 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-ccHHH
Q psy1725 188 DSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-PSYTW 266 (837)
Q Consensus 188 ~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-~n~~~ 266 (837)
..-....+++.-|.+++..|.+.+..+|+.-+|.++..+|.++.|+++|| +.|+.+.....+..+..+...+. ++.+.
T Consensus 224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~ 302 (394)
T COG2814 224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPAL 302 (394)
T ss_pred HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 33344556777788899999999999999999999999999999999999 98888888877777766665555 45556
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~ 345 (837)
.++.-++.|++.+.. ..-...+++ ..|+.+..+.++....+++|..+|..+||.+.++.|+....|+.++..++..++
T Consensus 303 ~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~ 381 (394)
T COG2814 303 ALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLL 381 (394)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 666777777777766 444555577 557999999999999999999999999999999999999999999877776666
Q ss_pred Hhh
Q psy1725 346 CPW 348 (837)
Q Consensus 346 ~~~ 348 (837)
.++
T Consensus 382 ~~~ 384 (394)
T COG2814 382 ALL 384 (394)
T ss_pred HHH
Confidence 554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-07 Score=99.86 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 182 GLCWMADSMEMTILSILSPALHC---DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i~~---~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
.++.|+.......+....+.+.+ .+|+++.+.++..+.+..++.+|.++.+++.||+|+|+++.++.++..++.++.
T Consensus 146 ~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~ 225 (310)
T TIGR01272 146 ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA 225 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 34444444334344444444443 368999999999999999999999999999999999999988888888887777
Q ss_pred HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 259 SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 259 a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
...++...+ .+-++.|++.+.. |...+...+..|+ +.+.+.++. ....+|.+++|.+.|.+.+..|-++.|++..+
T Consensus 226 ~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 226 ALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 666654433 4555789998888 8888888777764 345566665 45668999999999999998899998885544
Q ss_pred H
Q psy1725 338 P 338 (837)
Q Consensus 338 ~ 338 (837)
.
T Consensus 303 ~ 303 (310)
T TIGR01272 303 C 303 (310)
T ss_pred H
Confidence 3
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=111.99 Aligned_cols=148 Identities=14% Similarity=0.041 Sum_probs=106.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCCh-------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRK-------QALTLCAVLLFYYGILSSLAPSYTWMLFLRGL 273 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr-------~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l 273 (837)
.+.+++|.+..+.++..+++.++..++.+++|+++||+||| ....+..++.++..++.+..++.+..++.-++
T Consensus 278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l 357 (476)
T PLN00028 278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL 357 (476)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 44677899999999999999999999999999999999865 23334444444444555566676666666666
Q ss_pred HHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhcc
Q psy1725 274 VGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLP 350 (837)
Q Consensus 274 ~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~p 350 (837)
.|++.+.. ....+++.++. ++.||...++...+..+|+.++|.+.+ .....+|++.|++.+++.++..++.++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 358 FSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 77765555 55555566665 578999999998877778777776643 22345699999998877666666666654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=103.96 Aligned_cols=146 Identities=14% Similarity=0.000 Sum_probs=111.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh------cccHHHHHHHH
Q psy1725 199 SPALHCDWQITRYQQALTTTIVF-LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL------APSYTWMLFLR 271 (837)
Q Consensus 199 l~~i~~~~~~s~~~~~~i~s~~~-lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~------a~n~~~l~i~R 271 (837)
.+.+.+|.|.+.++.+++..... .+..++.++.|++.||+|+|+++.++.++.++..+.... .++...++..-
T Consensus 231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (390)
T TIGR02718 231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS 310 (390)
T ss_pred hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence 34555678999999999988876 477788999999999999999998877665333322211 23444445555
Q ss_pred HHHHhhhchH-HHHHHHHHhccCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPS-KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~-~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~ 344 (837)
.+.+++.|.. +...+...+..++ +.++..+++.+....+|..+||.++|.+.+..||+..|++.++..++..+
T Consensus 311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5666776766 5666666666665 88999999999999999999999999999989999999988765555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-07 Score=98.55 Aligned_cols=159 Identities=28% Similarity=0.433 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc
Q psy1725 184 CWMADSMEMTILSILSPALHCDWQITR--YQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA 261 (837)
Q Consensus 184 ~~~~~~~~~~~~~~~l~~i~~~~~~s~--~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a 261 (837)
..+....+........+.+..+++.+. ...++..+.+.++..++.++.|.++|++|||+.+..+.....++.+.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 334444667777778888888887666 478999999999999999999999999999999988888777777888888
Q ss_pred cc--HHHHHHHHHHHHhhhchH-HHHHHHHHhccCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHHhcc--cChHHHHHH
Q psy1725 262 PS--YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPS-KQRAKCVVLLDC-FWALGACFEVLLALIVMPT--LGWKWLLAL 334 (837)
Q Consensus 262 ~n--~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~-~~Rg~~~~~~~~-~~~lG~~lgp~l~~~l~~~--~gWr~~f~i 334 (837)
.+ ...+++.|++.|++.+.. +...+++.|++|+ ++|+...+.... ...+|.++++++++.+... .+||+.|++
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL 169 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 77 999999999999999887 8888888999987 689999998888 6888999999888777654 689997777
Q ss_pred HHHHHHHH
Q psy1725 335 STAPLLAF 342 (837)
Q Consensus 335 ~~i~~~~~ 342 (837)
..+.....
T Consensus 170 ~~~~~~~~ 177 (338)
T COG0477 170 AALLGLLL 177 (338)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=104.07 Aligned_cols=156 Identities=17% Similarity=0.026 Sum_probs=99.6
Q ss_pred HHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH--h--cccHHHHHHH
Q psy1725 196 SILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS--L--APSYTWMLFL 270 (837)
Q Consensus 196 ~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a--~--a~n~~~l~i~ 270 (837)
...+|.+ .+++|.+..+.++..++..++..+++++.|+++||+|||++++++.++.++..+... . .++....++.
T Consensus 263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (432)
T PRK10406 263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342 (432)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3445554 566899988889988888888889999999999999999988777665444333221 1 2233322222
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWA-LGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~-lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
-++.+++.+.. .....+.+|++|++.|+.+.|+...... ++....|.+.+.+.....|...++..++..++..+..++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 343 VMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22233333443 4455667999999999999999875433 333347777776643323555666655555555555555
Q ss_pred ccC
Q psy1725 349 LPE 351 (837)
Q Consensus 349 ~pe 351 (837)
+++
T Consensus 423 l~~ 425 (432)
T PRK10406 423 LHR 425 (432)
T ss_pred hhh
Confidence 443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-06 Score=92.33 Aligned_cols=159 Identities=20% Similarity=0.144 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
-++.+-.+-+++|.++.+++.+...-+....+...+.|.++||+|||+.-++-++++.++++ +-..+|++.++++|++.
T Consensus 53 QGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlg 131 (354)
T PF05631_consen 53 QGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLG 131 (354)
T ss_pred hcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHH
Confidence 34444455678999999999999999999999999999999999999999999999999886 56679999999999999
Q ss_pred HhhhchH-HHHHHHH-HhccCc----chhhHHHHHHH-HHHHHHHHHHHHHHHHHhcccCh--HHHHHHHHHHHHHHHHH
Q psy1725 275 GFAIGCV-PQSVTLY-AEFLPS----KQRAKCVVLLD-CFWALGACFEVLLALIVMPTLGW--KWLLALSTAPLLAFACI 345 (837)
Q Consensus 275 G~g~g~~-~~~~~~i-~e~~~~----~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l~~~~gW--r~~f~i~~i~~~~~~~~ 345 (837)
|++.+.. ++--+++ .|.-.. +..+.-.+... ...++-.++..+++-++.+..+. .++|....+..++..++
T Consensus 132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~ 211 (354)
T PF05631_consen 132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999998 7766776 775322 22222222111 11222234444444455554443 77888777655544444
Q ss_pred Hh-hccCCcc
Q psy1725 346 CP-WLPESAR 354 (837)
Q Consensus 346 ~~-~~pesp~ 354 (837)
+. ..+|.+.
T Consensus 212 I~~~W~ENyg 221 (354)
T PF05631_consen 212 ILKTWPENYG 221 (354)
T ss_pred HHhcccccCC
Confidence 43 4677643
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-07 Score=103.74 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=115.2
Q ss_pred HHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHH
Q psy1725 199 SPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-----PSYTWMLFLRG 272 (837)
Q Consensus 199 l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-----~n~~~l~i~R~ 272 (837)
.|. +.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++..++.++.+.. .+...++++-+
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 344 356789999999998888888999999999999999999999999888877777766653 35677788889
Q ss_pred HHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy1725 273 LVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 273 l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~ 344 (837)
+.|++.+.. +....... ..++++||+..++.+....+|..+|+.+++.+.+..+|....+..++.+++.++
T Consensus 318 ~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 999998876 44444333 344589999999999999999999999999998888887766666655444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-07 Score=97.15 Aligned_cols=177 Identities=20% Similarity=0.127 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
||..+....+.... .-....++..-|++++.+|.++++.+.+.+.-.+|..+| ++.|.+.|++|.+.++.++.+...+
T Consensus 1 rW~~l~a~~~v~~~-~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~ 78 (250)
T PF06813_consen 1 RWLSLVASIWVQLC-SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFV 78 (250)
T ss_pred ChhhHHHHHHHHHh-cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35543333333332 335556677789999999999999999999999999875 8899999999999999999999988
Q ss_pred HHHHHHhc-------ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 254 YGILSSLA-------PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 254 ~~i~~a~a-------~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
+..+..++ .+++.+.+..++.|.+.+.. +.+.....+.+| ++||.+.|+.-...+++..+-..+...+.+.
T Consensus 79 GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 79 GYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 88776654 36778888888888887766 666666678886 6899999999999999887766666555554
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 326 LGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 326 ~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
..-+..+.....+.++.++..++++..|
T Consensus 158 ~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 158 DPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 4455555555556666565656655443
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=110.27 Aligned_cols=174 Identities=14% Similarity=0.198 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC--ChHHHHHHHHHHHHH
Q psy1725 177 LSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG--RKQALTLCAVLLFYY 254 (837)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G--Rr~vl~~~~~l~~i~ 254 (837)
.+....+...+......+....+|...++.+.++.+.+...++..+...+|-++.|.++|+.. ++.++.+++++.+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 344555666667777777888899999999999999999999999999999999999999988 677888888899999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHH
Q psy1725 255 GILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLL 332 (837)
Q Consensus 255 ~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f 332 (837)
.+.+.++++++.+++.-.+.|++.|.. .....++.|+++.++-..+.|+.....+++.++||.++|.+.+..+ |...|
T Consensus 379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF 458 (509)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence 999999999999999999999999998 5555567999999999999999999999999999999998888776 99999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy1725 333 ALSTAPLLAFACICPWLP 350 (837)
Q Consensus 333 ~i~~i~~~~~~~~~~~~p 350 (837)
+..++..++..+.+++.|
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 999887777777666665
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-07 Score=103.00 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=111.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHh
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS-LAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a-~a~n~~~l~i~R~l~G~ 276 (837)
..|.+.+.+|.++.+.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.|+
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 301 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCA 301 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566667899999999999999999999999999999999999999998888887776554 35566666777777777
Q ss_pred hhchH-HHHHHHH-HhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHH
Q psy1725 277 AIGCV-PQSVTLY-AEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT-LGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 277 g~g~~-~~~~~~i-~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-~gWr~~f~i~~i~~~~~~~~ 345 (837)
+..+. ++..... .+..+++.++... .+....+|..+||.++|.+.+. .+|++.+++.++..++....
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 302 GLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 66554 4334333 5555555566543 4667889999999999999884 68999999887654444333
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=101.82 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=105.1
Q ss_pred HHHHHHhCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH---Hhc-ccHHHHHHHHH--
Q psy1725 200 PALHCDWQITRYQQALTTTIV-FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS---SLA-PSYTWMLFLRG-- 272 (837)
Q Consensus 200 ~~i~~~~~~s~~~~~~i~s~~-~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~---a~a-~n~~~l~i~R~-- 272 (837)
+.+.+++|.+..+.+++.+.. .++..++.+++|++.||+|||+.+.++.++..+..+.. ++. ++.+.+++.-+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456778999999999988665 45789999999999999999998887777666554433 444 45565555543
Q ss_pred --HHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 273 --LVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 273 --l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
..|++.+.. .....++.+.+|.+.+ ++.+....+|.++++.++|.+.+..||++.|.+.++.+++.+++....
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 5555566777776554 444455567777667789999999999999999888776665555443
Q ss_pred c
Q psy1725 350 P 350 (837)
Q Consensus 350 p 350 (837)
+
T Consensus 390 ~ 390 (402)
T PRK11902 390 R 390 (402)
T ss_pred h
Confidence 3
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=101.74 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy1725 194 ILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-GRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272 (837)
Q Consensus 194 ~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~ 272 (837)
.....+|.+.++.|.+..+.++..+.+.++..++.++.|+++||+ +||+.+.++.++.+++.++..+.++..... .-+
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 293 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL 293 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence 334456777778899999999999999999999999999999999 577777888888888877777766544332 446
Q ss_pred HHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy1725 273 LVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG 327 (837)
Q Consensus 273 l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g 327 (837)
+.|++.|.. +...+.+.+.. ++++++...++.+....+|..++|.++|.+.++.|
T Consensus 294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789998887 66667665444 45778899999888888999999999999987665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-06 Score=99.67 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=113.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q psy1725 198 LSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA 277 (837)
Q Consensus 198 ~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g 277 (837)
..|.+.+++|.+..+.++..+.+.++..++.++.+++.||.+|+..+....+...+..++....++.+.+.+.-++.|++
T Consensus 239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~ 318 (394)
T PRK10213 239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLT 318 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999999999999996544434433333444445555667788888889999999
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAF 342 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~ 342 (837)
.+.. +.....+.+..| +++++..++......+|..+|+.++|.+.+..|++..++..++..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 319 FALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 8887 666667777776 567788888888889999999999999999999999998877654443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=105.83 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHH-HHHHHHHHHHHHHHHH
Q psy1725 183 LCWMADSMEMTILSILSPALHCDW--QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQA-LTLCAVLLFYYGILSS 259 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~i~~~~--~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~v-l~~~~~l~~i~~i~~a 259 (837)
+.+++.......+...+|.+.+++ +.+..+.++..+...++..+|.+++|+++||+|||+. .....++..++.++..
T Consensus 249 ~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~ 328 (412)
T TIGR02332 249 LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666777777775 5677888999999999999999999999999997764 3344334443333222
Q ss_pred hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHH
Q psy1725 260 LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTA 337 (837)
Q Consensus 260 ~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i 337 (837)
...+....+++-++.++|.... +.......|.+|+++|+.+.|+.+....+|.+++|.+.+.+.+..| |++.|++.++
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 329 ATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 2333222222222223333222 2233334678999999999999999999999999999999988774 9999987765
Q ss_pred HH
Q psy1725 338 PL 339 (837)
Q Consensus 338 ~~ 339 (837)
..
T Consensus 409 ~~ 410 (412)
T TIGR02332 409 LL 410 (412)
T ss_pred HH
Confidence 43
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=119.08 Aligned_cols=143 Identities=20% Similarity=0.105 Sum_probs=122.0
Q ss_pred HHHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q psy1725 199 SPALHCDWQITRY-QQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA 277 (837)
Q Consensus 199 l~~i~~~~~~s~~-~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g 277 (837)
.+.+.+++|.+.. ..+++.+.+.++..++.+++|+++||+++|+++.++.++.+++.++.++..+.+.++++-++.|++
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 335 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS 335 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455677899988 999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHH
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP-TLGWKWLLALSTAPLLA 341 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~-~~gWr~~f~i~~i~~~~ 341 (837)
.+.. +...+++.+..|++.||.++++.++...+|.++++++++.+.. ..+|.+.|++.++..++
T Consensus 336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 336 AGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8887 7777888999999999999999999999999988888877654 24566667665554333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.7e-07 Score=99.07 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=136.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH
Q psy1725 174 QAKL-SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF 252 (837)
Q Consensus 174 ~~~~-~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~ 252 (837)
-|.. ++++....+-..+|.. .+.....+-++-+.++...|...+.-.+.-++.-.+..++.+|+|.|+.++++..+..
T Consensus 222 fw~~~l~v~g~~~~Y~vfdqq-f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~ 300 (412)
T PF01306_consen 222 FWFFVLFVIGVAAIYDVFDQQ-FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMA 300 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 3443 3333344455555554 3322222222223345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccChHH
Q psy1725 253 YYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLGWKW 330 (837)
Q Consensus 253 i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~gWr~ 330 (837)
+=.+++++++|.+.+.+.+.+.|+..+.. ....-++++.+|++..++...+ ++.+..+|.++.+.++|.+-++.|.+-
T Consensus 301 iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ 380 (412)
T PF01306_consen 301 IRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQH 380 (412)
T ss_dssp HHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHH
Confidence 99999999999999999999999999998 8888999999999988877776 478999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-ccCC
Q psy1725 331 LLALSTAPLLAFACICPW-LPES 352 (837)
Q Consensus 331 ~f~i~~i~~~~~~~~~~~-~pes 352 (837)
+|++.+...++..++..+ ++++
T Consensus 381 tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 381 TYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHHHHHheeeecCC
Confidence 999888766655555444 6554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=99.69 Aligned_cols=169 Identities=20% Similarity=0.170 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHH-HHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--GRKQAL-TLCAVLLFY 253 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--GRr~vl-~~~~~l~~i 253 (837)
+..+++++++.+..+..+.--.| .+.|..|.+..+.++..++|-.+...|.+++|++||++ |||... ++.+++..+
T Consensus 254 iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~ 333 (448)
T COG2271 254 IWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITA 333 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 45667777777777777666655 45677899999999999999999999999999999984 666544 444444444
Q ss_pred HHHHHHhcc--cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccChH
Q psy1725 254 YGILSSLAP--SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWAL-GACFEVLLALIVMPTLGWK 329 (837)
Q Consensus 254 ~~i~~a~a~--n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~l-G~~lgp~l~~~l~~~~gWr 329 (837)
+.+..=+++ |+....++-++.|+..-+. ........|..|++--|.+.|+.+.+..+ |.+.+...-+.+.+..||-
T Consensus 334 ~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~ 413 (448)
T COG2271 334 SLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD 413 (448)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCc
Confidence 444444555 5588888899999887666 55555569999999999999999998888 8888888888888989999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1725 330 WLLALSTAPLLAFACIC 346 (837)
Q Consensus 330 ~~f~i~~i~~~~~~~~~ 346 (837)
..|++..+.+++..++.
T Consensus 414 g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 414 GGFIVLSIAALLAILLL 430 (448)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 99988877655554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-06 Score=97.91 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=101.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHH
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-----PSYTWMLFLRGLVG 275 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-----~n~~~l~i~R~l~G 275 (837)
.+.+++|.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.++..++.++.... ++...+++.-++.|
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 311 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG 311 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999998888877777666553 23445566677889
Q ss_pred hhhchH-HHHHHHHHhccCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHhcccChHHHHHHH
Q psy1725 276 FAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFW-ALGACFEVLLALIVMPTLGWKWLLALS 335 (837)
Q Consensus 276 ~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~-~lG~~lgp~l~~~l~~~~gWr~~f~i~ 335 (837)
++.+.. +.......|..| ++|+.+.++.+... .+|.+.+++++ .+.+..+|...++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHHH
Confidence 988887 667677788776 68999999887665 45677777666 554444555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-07 Score=102.11 Aligned_cols=149 Identities=11% Similarity=-0.031 Sum_probs=115.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-hhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD-RYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVG 275 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd-~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G 275 (837)
..+|.+.++.+.++.+.++..+...++..++..+.+++.| |++.++.+..+.++.+++.++.+++++++.+++..++.|
T Consensus 229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 308 (400)
T PRK11646 229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFY 308 (400)
T ss_pred HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456655565447778888888888777766666677776 466677778888888888888888899888888888889
Q ss_pred hhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc---Ch-HHHHHHHHHHHHHHHHH
Q psy1725 276 FAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL---GW-KWLLALSTAPLLAFACI 345 (837)
Q Consensus 276 ~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~---gW-r~~f~i~~i~~~~~~~~ 345 (837)
++.+.. +....++.|..|+++||+.+++.+....+|..+||.++|.+.++. ++ ...+++.++.+++..+.
T Consensus 309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 888877 677778899999999999999999999999999999999998763 33 44555545555444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-06 Score=92.22 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=128.2
Q ss_pred HHHHHHH-hCCChhHHH-HHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q psy1725 199 SPALHCD-WQITRYQQA-LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 199 l~~i~~~-~~~s~~~~~-~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~ 276 (837)
.|.+.+. .|++.+++. -+.-...-.+.+..++...+.|..|-||+++++.+...+..++.-+.++...+-+.-++-|+
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~ 106 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL 106 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 3455554 788877654 55666667788888999999999999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHHHHHHHhhccCCcc
Q psy1725 277 AIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP--TLGWKWLLALSTAPLLAFACICPWLPESAR 354 (837)
Q Consensus 277 g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~--~~gWr~~f~i~~i~~~~~~~~~~~~pesp~ 354 (837)
+.+.-.+-.+++--..|+++--++.+...++.-+|-.++.++|-.+.. ..+.+..+++......+.+++.+++|..++
T Consensus 107 ~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 107 ATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 988887788888666688888888999999999999999999987765 445677777777666666667777887654
Q ss_pred h
Q psy1725 355 Y 355 (837)
Q Consensus 355 ~ 355 (837)
.
T Consensus 187 S 187 (412)
T PF01770_consen 187 S 187 (412)
T ss_pred c
Confidence 3
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-06 Score=96.84 Aligned_cols=144 Identities=16% Similarity=0.169 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-cc
Q psy1725 186 MADSMEMTILSILSPALHCDWQ-ITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-PS 263 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~i~~~~~-~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-~n 263 (837)
++.+.....+....+..-++.| .+....+...++-.++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++
T Consensus 217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~ 296 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDP 296 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444445555555566667777 667777777777778888899999999999999999999999999999998887 56
Q ss_pred HHHHHHH----HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHhcccChH
Q psy1725 264 YTWMLFL----RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDC-FWALGACFEVLLALIVMPTLGWK 329 (837)
Q Consensus 264 ~~~l~i~----R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~lG~~lgp~l~~~l~~~~gWr 329 (837)
.+..++. -.+.|+.-+.. ..+..++.+..|++.|+.+.++++. ..++|..+|.+++|.+.++.|-|
T Consensus 297 ~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~ 368 (400)
T PF03825_consen 297 WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGAR 368 (400)
T ss_pred cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch
Confidence 5554443 44689999998 8888889999999999999999876 57899999999999999876644
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.3e-08 Score=109.81 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=106.5
Q ss_pred ceeEEEeehhhhhhHHhhcc-ccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHhh-
Q psy1725 654 VCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKF- 731 (837)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~- 731 (837)
...+.+|+...++|.++.+. |. ...+.........+...++.+++|+++||+
T Consensus 20 ~e~fs~Yg~~~~L~~yL~~~lgl--------------------------s~~~a~~i~~~~~~~~~l~~ligG~LaDRil 73 (493)
T PRK15462 20 WEYFSFYGMRALLILYLTNQLKY--------------------------DDNHAYELFSAYCSLVYVTPILGGFLADKVL 73 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33457788888888887653 32 233444455566677788999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCC--ccchhhHHHHHHHhhhcch
Q psy1725 732 GRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP--LRAVGVGTCSAMARLGAMI 809 (837)
Q Consensus 732 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~--~r~~~~g~~~~~~~~g~~i 809 (837)
|||+.++++.+++++..+++...............+...+.+...+....+.+|+||++ .|.+++++.+...++|+++
T Consensus 74 Grrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~i 153 (493)
T PRK15462 74 GNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSII 153 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHH
Confidence 99999999999888877665432211122222222222333344566678899999986 7999999999999999999
Q ss_pred hHHHHHHHhhc-chhhHHHHHH
Q psy1725 810 TPYIAQVLLKS-SLSIAMTVYG 830 (837)
Q Consensus 810 ~~~~~~~~~~~-~~~~~~~~~~ 830 (837)
+|.+.+++.+. +....|.+.+
T Consensus 154 ap~l~g~L~~~~Gw~~~F~iaa 175 (493)
T PRK15462 154 APIACGYAQEEYSWAMGFGLAA 175 (493)
T ss_pred HHHHHHHHHhhhChHHHHHHHH
Confidence 99999999875 5555555543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.5e-07 Score=103.36 Aligned_cols=130 Identities=21% Similarity=0.217 Sum_probs=110.1
Q ss_pred HHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh----cccHHHHHHH
Q psy1725 196 SILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL----APSYTWMLFL 270 (837)
Q Consensus 196 ~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~----a~n~~~l~i~ 270 (837)
...+|.+ ++.+|.+..+.++......++..++.++.|++.||+|||+++.++.++.+++..+..+ ..+.+.++..
T Consensus 275 ~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (485)
T TIGR00711 275 FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP 354 (485)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 3445544 4558999999999999999999999999999999999999999999888888887763 2356777778
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
-++.|+|.+.. +.......+..|+++||.+.++.+....+|..+|+.+.+.+.++
T Consensus 355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999887 66666667888999999999999999999999999999888654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=100.24 Aligned_cols=126 Identities=14% Similarity=0.082 Sum_probs=101.0
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhhch
Q psy1725 203 HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP--SYTWMLFLRGLVGFAIGC 280 (837)
Q Consensus 203 ~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~--n~~~l~i~R~l~G~g~g~ 280 (837)
++.+|.+....++......++..++.++++++.||+|+|+++.++.++..++.++..+.+ +.+.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676655555555555677888999999999999999999999999888888777754 667777788889999888
Q ss_pred H-HHHHHHHHhccCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 281 V-PQSVTLYAEFLPSK-------QRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 281 ~-~~~~~~i~e~~~~~-------~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
. +...+..+|..+.+ ++|...++++....+|..+|+.+.+.+.+..|+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 77778888888754 359999999999999999999999887654444
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=95.30 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q psy1725 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRG 272 (837)
Q Consensus 193 ~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~ 272 (837)
++++.....-..++|++..+..++.-.-.+..++|++++|+|.||+|-|+++..+++++.+.++..-+...-..+.++-.
T Consensus 270 til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gl 349 (438)
T COG2270 270 TILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGL 349 (438)
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 33444444445699999999999999999999999999999999999999999999999999998888888888888899
Q ss_pred HHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHHHhhcc
Q psy1725 273 LVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAFACICPWLP 350 (837)
Q Consensus 273 l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~~~~~~~~p 350 (837)
+.|+..|+. +.+-+++++++|+++-+..+|+++...-.+..+||.+-+.+.+..+ =|.-+....+..++-+++...+|
T Consensus 350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence 999999999 8999999999999999999999999999999999999999887543 56666655555555555555666
Q ss_pred CC
Q psy1725 351 ES 352 (837)
Q Consensus 351 es 352 (837)
+.
T Consensus 430 ~~ 431 (438)
T COG2270 430 VP 431 (438)
T ss_pred CC
Confidence 54
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-07 Score=96.65 Aligned_cols=148 Identities=31% Similarity=0.491 Sum_probs=103.1
Q ss_pred HHhhhhccccccCcccccchhhhhhhhHhHhhhhhHHHH-HHHHHHHHHHHHHHHhhccCccHHHHHHHHHH--------
Q psy1725 450 FQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA-QALTLCAVLLFYYGILSSLAPSYTWMLFLRGL-------- 520 (837)
Q Consensus 450 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~-------- 520 (837)
....++.+.+..++-..++..|....+...+...+..-. ++..+..++-+.+|..+..+||+.|+....++
T Consensus 104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~ 183 (528)
T KOG0253|consen 104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGL 183 (528)
T ss_pred HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCc
Confidence 344444444444444445555555444444433332222 23445555555555555555555555555554
Q ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcchHHHHHhhhhhhHHHHhhhccccCCcchhhhcCCH
Q psy1725 521 -----------------------CFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQP 577 (837)
Q Consensus 521 -----------------------~~~~~g~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~ 577 (837)
+.+.+|.++...+++.++.+.||||...+...+..+...+++++||||||...+|+.
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~ 263 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDD 263 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCCh
Confidence 566666777778888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcccc
Q psy1725 578 EKALATLREIAADNGKPMLL 597 (837)
Q Consensus 578 ~~a~~~l~~~~~~~~~~~~~ 597 (837)
+||.++++++.+.|+.+...
T Consensus 264 ~kAletL~kiArmNg~qlpl 283 (528)
T KOG0253|consen 264 YKALETLHKIARMNGKQLPL 283 (528)
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999887543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=113.02 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=117.9
Q ss_pred HHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc---------------
Q psy1725 198 LSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--------------- 261 (837)
Q Consensus 198 ~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--------------- 261 (837)
.+|. +.+.+|.+....+++.+.+.+|..+|.++.|+++++.++++.+..+.++.+++.+..++.
T Consensus 247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (1140)
T PRK06814 247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL 326 (1140)
T ss_pred HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence 3444 455689999999999999999999999999999998887776666666666655555543
Q ss_pred -----ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cccChHHHHHH
Q psy1725 262 -----PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-PTLGWKWLLAL 334 (837)
Q Consensus 262 -----~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-~~~gWr~~f~i 334 (837)
++.+.++++-++.|++.+.. +...+++.+.+|++.||+++|+.++...+|..+|+++++.+. ...++.+.+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~ 406 (1140)
T PRK06814 327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILF 406 (1140)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67788888999999998888 777888899999999999999999999999999999998886 34577777776
Q ss_pred HHHHHHHH
Q psy1725 335 STAPLLAF 342 (837)
Q Consensus 335 ~~i~~~~~ 342 (837)
.++..++.
T Consensus 407 ~~~~~~~~ 414 (1140)
T PRK06814 407 IALANLIV 414 (1140)
T ss_pred HHHHHHHH
Confidence 65543333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=100.78 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHH--------HHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQA--------LTLCAVL 250 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~v--------l~~~~~l 250 (837)
...+..+...+....+...+|.+ .+.+|.+..+.++..++..++..++.++.|+++||+++|+. +..+...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 344 (465)
T TIGR00894 265 AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG 344 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 33444445544455555556655 56689999999999999999999999999999999874421 1111111
Q ss_pred H--HHHHHHHHh-cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy1725 251 L--FYYGILSSL-APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL 326 (837)
Q Consensus 251 ~--~i~~i~~a~-a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~ 326 (837)
. ++..++... ..+....+++-++.|.+.+.. +.......|..| +.+|.+.++.+....+|..++|.+.+.+.+..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~ 423 (465)
T TIGR00894 345 LGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQD 423 (465)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC
Confidence 1 111111222 234444444545555555444 333334457665 58999999999999999999999999887643
Q ss_pred ---ChHHHHHHHHHHHHHHHHHHhhcc
Q psy1725 327 ---GWKWLLALSTAPLLAFACICPWLP 350 (837)
Q Consensus 327 ---gWr~~f~i~~i~~~~~~~~~~~~p 350 (837)
+|+..|++.++..++..+...+.+
T Consensus 424 ~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 424 SKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred CchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 488899888776666655554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-06 Score=94.45 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=93.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhch
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGC 280 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~ 280 (837)
.+.+++|.+..+.++..+.+.++..++.++.+++.||+|||+++.++.++..++.++..+.++....+..-++.++|.+.
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 308 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV 308 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999998888888877666555555555554443
Q ss_pred H-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 281 V-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 281 ~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
. .. ....+..|.++|+ +.......++..+|+.+++++.+..|+.....+.++
T Consensus 309 ~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 309 GFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 3 22 2224445544443 333344456666667777777666677665544443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=84.41 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=92.4
Q ss_pred HHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCcc
Q psy1725 713 TTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLR 792 (837)
Q Consensus 713 ~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r 792 (837)
..++.+++..+.+++.||+|||+.+..+.....++.+.+.... +.....+..++.++......+..+.+..|.+|++.|
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 4567788899999999999999999988888877776665543 333344444555555556678888999999999999
Q ss_pred chhhHHHHHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHH
Q psy1725 793 AVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVA 832 (837)
Q Consensus 793 ~~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 832 (837)
+++.++.+....++..+++.+.+.+.+. +....+++.++.
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999988876 333555554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-06 Score=94.94 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=111.7
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-
Q psy1725 203 HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV- 281 (837)
Q Consensus 203 ~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~- 281 (837)
++.+|.++.+.++..+.+.++..+|.++.|++.||+|||+++..+.++..+..++..+.++.. .++.-++.|++.+..
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999888877777777766643 345667789999998
Q ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHH
Q psy1725 282 PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAFACI 345 (837)
Q Consensus 282 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~~~~ 345 (837)
|...+...+..++ +.+.+.++..+ ..+|..++|.+.|.+.+..| -|..|++..+..+..++.
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 8888888887764 45677777764 44678888888888888887 788888766554444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=99.33 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=107.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHhh
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA---PSYTWMLFLRGLVGFA 277 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a---~n~~~l~i~R~l~G~g 277 (837)
.++..+|.+..+.++....+.++..++.++.|++.||+|||+++..+.++..++.++.... ++.+...+.-++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 4566689999999999999999999999999999999999999999988887777655432 4666677788999999
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
.|.. +.....+.+..|+++++.+.++.++...+|..+|+.+.+.+.+
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 6677777888999999999999999999999999999988743
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-06 Score=93.73 Aligned_cols=136 Identities=15% Similarity=-0.000 Sum_probs=109.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc
Q psy1725 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG 279 (837)
Q Consensus 200 ~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g 279 (837)
+.+++.+|.++.+.++..+.+.+|..+++++.+++.|++++|+++..+. +.++..++.++.++++.+++.-++.|++.+
T Consensus 230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g 308 (393)
T PRK11195 230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG 308 (393)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 3456678999999999999999999999999999999999998888775 444555556677788877788889999988
Q ss_pred hH-HHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 280 CV-PQSVTLYAEFLPSKQ-RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 280 ~~-~~~~~~i~e~~~~~~-Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
.. ++..+.+.+..|++. +|++.++.+....+|..++..+.+.+ ...|=|+.+++.++
T Consensus 309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 367 (393)
T PRK11195 309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGF 367 (393)
T ss_pred hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHH
Confidence 87 666777778766554 79999999999999999999998866 45666666655444
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=88.08 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
.|.+ .++|.++.++.+-- ++..-.-.++.||+|+...+.+.+.-+.-.++..+++|.++|++||+.+.+.+..+..+
T Consensus 266 fw~~-~iicv~yyva~fPF--i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 266 FWVL-VIICVLYYVAWFPF--ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred HHHH-HHHHHHHHHHHHHH--hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence 3444 34444444443332 22233456889999999999999998888999999999999999999887776655443
Q ss_pred H-HHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC---h
Q psy1725 254 Y-GILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG---W 328 (837)
Q Consensus 254 ~-~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g---W 328 (837)
. -....+ +...=+++-.+.|+..+.. ....+.++-+.|.++-|.+.+..+....+|..+.|+++|++.+..| |
T Consensus 343 ~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 343 LGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred HHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 3 222222 3444456778899998888 6688999999999999999999999999999999999999988655 4
Q ss_pred HHHHHHHH-HHHHHHHHHHhhc
Q psy1725 329 KWLLALST-APLLAFACICPWL 349 (837)
Q Consensus 329 r~~f~i~~-i~~~~~~~~~~~~ 349 (837)
--.|.+.. ..++....+++.+
T Consensus 421 le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 421 LEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 44554443 3444444444444
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-06 Score=95.03 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc-----------c
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVF-LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA-----------P 262 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~-lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a-----------~ 262 (837)
.....|.+.+++|.+.++.+.+.+++. ++..++.+++|++.||+|||+.+..+.++.++...+..+. +
T Consensus 228 ~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFP 307 (356)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 334455555668999999998887766 6788999999999999999999998888887776655543 4
Q ss_pred cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHH
Q psy1725 263 SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWA 309 (837)
Q Consensus 263 n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~ 309 (837)
+.+.++.+.++.|++.+.. +...+++.|.+|+++||+.+++.++...
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 308 HLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 5677888899999999988 8888888999999999999999877543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-06 Score=93.49 Aligned_cols=125 Identities=26% Similarity=0.392 Sum_probs=107.4
Q ss_pred HHHHHHHHHHH-HHHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc---cHHH
Q psy1725 192 MTILSILSPAL-HCDWQIT-RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP---SYTW 266 (837)
Q Consensus 192 ~~~~~~~l~~i-~~~~~~s-~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~---n~~~ 266 (837)
.......+|.+ .+++|.+ ..+.++..+...++..++.++.|+++||+|+|+..........+..+...+.. +...
T Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T PF07690_consen 222 FSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVW 301 (352)
T ss_dssp HHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHH
T ss_pred HHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33356666765 8889999 78999999999999999999999999999998888888888777777666554 4577
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEV 316 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp 316 (837)
.++.-++.|++.+.. +....++.|.+|+++||++.++.+....+|..+||
T Consensus 302 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 302 LIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 777888899998888 88889999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=94.56 Aligned_cols=167 Identities=20% Similarity=0.316 Sum_probs=123.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhc
Q psy1725 296 QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAAD 375 (837)
Q Consensus 296 ~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~ 375 (837)
.......+.++...+|.++|+++.|.+++..|-|.++.+..+...+..+...+.|+-.
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~---------------------- 172 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW---------------------- 172 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH----------------------
Confidence 3444556677788889999999999999999999999888776666655554444311
Q ss_pred cCCcccccccccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy1725 376 NGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYV 455 (837)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~ 455 (837)
.....=++...+.++.+...++
T Consensus 173 ----------------------------------------------------------~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 173 ----------------------------------------------------------MFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhhccchhHHhHh
Confidence 1122235556667777888888
Q ss_pred ccccccCcccccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 456 YTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLAL 535 (837)
Q Consensus 456 ~~~~~~~l~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 535 (837)
+..|..+.++|+..+.+ ......+... .-...++
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~---------------------------------------------~~~~~a~ 228 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLM---------------------------------------------LPAGAAY 228 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHH---------------------------------------------HHHHHHH
Confidence 88999998888888777 4443333322 2223333
Q ss_pred HhccCcchHHHHHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhc
Q psy1725 536 IVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADN 591 (837)
Q Consensus 536 ~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~ 591 (837)
+.. +||+......++.++.++..++.||||||+..++|.+|+.+.++++.+.|
T Consensus 229 ~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n 281 (521)
T KOG0255|consen 229 ITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLN 281 (521)
T ss_pred HHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhc
Confidence 333 89999999999999888888888899999999999999999999998776
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-06 Score=91.36 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC---hHHHHH-HHHHHHHHHHHHHhc
Q psy1725 186 MADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR---KQALTL-CAVLLFYYGILSSLA 261 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR---r~vl~~-~~~l~~i~~i~~a~a 261 (837)
++.......+..-+|.+.++.|.+.. .+...++..++..++ .++++||..| |+.... ..++.++.....+++
T Consensus 202 ~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~ 277 (368)
T TIGR00903 202 GFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE 277 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333445567777777777754 555555555544444 4677777654 343332 333444444444555
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLL 340 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~ 340 (837)
.+....+++-++.|++.... +...++.+|.+|++.||++.|+.+....+|.+++|++.+.+.. +-+..|.+.+++.+
T Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~ 355 (368)
T TIGR00903 278 LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILIT 355 (368)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 55555555666677766666 6677788999999999999999999999999999988877763 67777877776666
Q ss_pred HHHHHHhhccCC
Q psy1725 341 AFACICPWLPES 352 (837)
Q Consensus 341 ~~~~~~~~~pes 352 (837)
+..+...+++++
T Consensus 356 i~~~~~~~~~~~ 367 (368)
T TIGR00903 356 IAFAIALLLPND 367 (368)
T ss_pred HHHHHHHhCCCC
Confidence 555554444543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-06 Score=94.72 Aligned_cols=133 Identities=7% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh-----cccHHHHHHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL-----APSYTWMLFL 270 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~-----a~n~~~l~i~ 270 (837)
+...+.+.++..-+....+++.+...++..++.+++++++||+|+|+++.++.++..++.+...+ ..+.+.+++.
T Consensus 251 ~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 330 (473)
T PRK10429 251 NGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIA 330 (473)
T ss_pred hhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 33334444443334556777777777899999999999999999999999888877766655432 3456667777
Q ss_pred HHHHHhhhchH-HHHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLP-------SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~-------~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
-++.|++.+.. ....++++|..+ .++.|...++.....-+|..+++.+.|++.+..|+
T Consensus 331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78889988887 777788888865 34456688999999999999999999888654443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-05 Score=89.10 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=86.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH---h-cccHHHHHHHHHHHHh
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS---L-APSYTWMLFLRGLVGF 276 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a---~-a~n~~~l~i~R~l~G~ 276 (837)
.+.+++|.+..+.++..+...++..++.++.|++.||+|||+++..+.++..+..+... . ..+.+.+.++-++.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999888876544333222 2 2244444444444444
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHH-HHHHHHHHHHHHHHH
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDC-FWALGACFEVLLALI 321 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~lG~~lgp~l~~~ 321 (837)
+.+.. ......+.|..| ++||.+.++... ...+|..+++++++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444 555566677766 889999888755 456777777777654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-06 Score=95.55 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc-
Q psy1725 185 WMADSMEMTILSILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP- 262 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~- 262 (837)
.++............+.+.++ ++.+ ...+++..++.++..++.+++++++||+|+|+++..+.++.+++.++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP 312 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence 333444444445555555554 4534 6788888999999999999999999999999999999999999999999887
Q ss_pred -cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy1725 263 -SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPS-------KQRAKCVVLLDCFWALGACFEVLLALIVMPTLG 327 (837)
Q Consensus 263 -n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~-------~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g 327 (837)
|.+.+++.-++.|++.+.. ....++++|..+. ++.|...+++....-+|..+++.+.+.+.+..|
T Consensus 313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998 7778888988863 446889999999999999999999888754433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=92.48 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHhhhchH-HHHHH
Q psy1725 210 RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL--APSYTWMLFLRGLVGFAIGCV-PQSVT 286 (837)
Q Consensus 210 ~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~--a~n~~~l~i~R~l~G~g~g~~-~~~~~ 286 (837)
.+..+.+.....++..++.+++++++||+|+|+.+.++.++..+..+...+ ..+.+.+++..++.|++.+.. +...+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a 342 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS 342 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777888899999999999999999999888776654443333 347777888889999999988 77778
Q ss_pred HHHhccCc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 287 LYAEFLPS-------KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 287 ~i~e~~~~-------~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
+++|..+. +..|...+.+.....+|..+|+.+++.+.+..|+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888752 3346678888889999999999999988765554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-05 Score=90.20 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhhh-hCChHHH--HHHHHHHHHHHHHHHh---------cccHHHHHHHHHHHHh
Q psy1725 213 QALTTTIVFLGMMLSSTFWGY----VSDR-YGRKQAL--TLCAVLLFYYGILSSL---------APSYTWMLFLRGLVGF 276 (837)
Q Consensus 213 ~~~i~s~~~lg~~vg~li~g~----lsd~-~GRr~vl--~~~~~l~~i~~i~~a~---------a~n~~~l~i~R~l~G~ 276 (837)
.+++.+...+...+.+++..+ +.+| .+.+... .+++++.+++.+..++ ..|++.+++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 667888888777777777554 4444 3333444 7788888887777764 4699999999999999
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
|+... +....++++..|++.||++++++..+..+|..+++.++.......+|.+.|...++..++..++.+
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA 465 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999998877777899888777765555444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=101.82 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=104.2
Q ss_pred ceeEEEeehhhhhhHHhhcc-ccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHh-h
Q psy1725 654 VCAFCYYGVVLMTTELFEAS-DTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEK-F 731 (837)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~-~ 731 (837)
...+.||+...+++.++++. |. ...+.........+......+++|+++|| +
T Consensus 25 ~er~~~y~~~~~l~~yl~~~lg~--------------------------~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~ 78 (489)
T PRK10207 25 WERFGYYGVQGILAVFFVKQLGF--------------------------SQEQAFITFGAFAALVYGLISIGGYVGDHLL 78 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--------------------------CHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc
Confidence 44567888888888777553 22 12223333333444455556789999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCC--ccchhhHHHHHHHhhhcch
Q psy1725 732 GRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP--LRAVGVGTCSAMARLGAMI 809 (837)
Q Consensus 732 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~--~r~~~~g~~~~~~~~g~~i 809 (837)
|||++++.+.++.++..+.+.+.......+.+...+...+.+...+....+..|.||++ .|+.++++.+...++|.++
T Consensus 79 G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~ 158 (489)
T PRK10207 79 GTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLI 158 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHH
Confidence 99999999999999988887765422222223333344444556677889999999987 4578999999999999999
Q ss_pred hHHHHHHHhhc-chhhHHHH
Q psy1725 810 TPYIAQVLLKS-SLSIAMTV 828 (837)
Q Consensus 810 ~~~~~~~~~~~-~~~~~~~~ 828 (837)
+|.+.|++.+. +....|++
T Consensus 159 g~~l~g~l~~~~gw~~~F~i 178 (489)
T PRK10207 159 SLSLAPVIADKFGYSVTYNL 178 (489)
T ss_pred HHHHHHHHHHhhChHHHHHH
Confidence 99999999887 44444444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-05 Score=86.56 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=97.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH---Hh--cccHHHHHHHH
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS---SL--APSYTWMLFLR 271 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~---a~--a~n~~~l~i~R 271 (837)
...|.+.+++|.+..+.++....+.++..+|.++.+++.||+|+|+.+....+..+++.+.. .. .++...+++.-
T Consensus 224 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (401)
T PRK11043 224 TGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPF 303 (401)
T ss_pred HHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34566677889999999998888889999999999999999999987766655554443322 22 34566666667
Q ss_pred HHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
.+.|++.+.. +.......|..| ++||++.++.++....+...++.+.+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 304 CVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7788888777 666666667665 6899999999988787888888888877654
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.8e-07 Score=95.16 Aligned_cols=153 Identities=13% Similarity=0.141 Sum_probs=123.4
Q ss_pred HHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhC--ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q psy1725 195 LSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYG--RKQALTLCAVLLFYYGILSSLAPSYTWMLFLR 271 (837)
Q Consensus 195 ~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~G--Rr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R 271 (837)
.-+.++. +.+.+..+.++.++..--..+.+.+|..++|.++||+| |-..-..++++.++.+....+++++.++++-+
T Consensus 289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~ 368 (464)
T KOG3764|consen 289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPN 368 (464)
T ss_pred hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhh
Confidence 3344444 45667766668888777788899999999999999999 65556677777888888889999999999999
Q ss_pred HHHHhhhchH-HHHHHHHHhccCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPSK------QRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~~------~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~ 344 (837)
+..|++.+.. +...+...++.+.+ .-|...++...++.+|..+||.++|.+.+..|.+|...+.++..++...
T Consensus 369 ~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 369 FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP 448 (464)
T ss_pred HHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence 9999998888 66667666666542 3467889999999999999999999999999999998887776665544
Q ss_pred HHh
Q psy1725 345 ICP 347 (837)
Q Consensus 345 ~~~ 347 (837)
+..
T Consensus 449 vl~ 451 (464)
T KOG3764|consen 449 VLL 451 (464)
T ss_pred HHH
Confidence 443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=88.78 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHhhhhCChHHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHhhhc
Q psy1725 213 QALTTTIVFLGMMLSSTF----WGYVSDRYGRKQALTLCAVLLFYYGILSSLAPS---------YTWMLFLRGLVGFAIG 279 (837)
Q Consensus 213 ~~~i~s~~~lg~~vg~li----~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n---------~~~l~i~R~l~G~g~g 279 (837)
.+++.++..+...+..++ ++++.+|++.+..+.++.++.+++.+..+++.+ .+.++..+++.|+|+.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 455555655555555444 466777777778899999999999888777755 4578899999999999
Q ss_pred hH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccChHHHHHHHHHHHHHHHHHH
Q psy1725 280 CV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP----------TLGWKWLLALSTAPLLAFACIC 346 (837)
Q Consensus 280 ~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~----------~~gWr~~f~i~~i~~~~~~~~~ 346 (837)
.. +.+.+++.+..|++.||+.+|++..+..+|..++..+...... ..+..+.|...++.+++..++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~ 475 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM 475 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999988888888877776653321 1135677777766554443333
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=86.54 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=116.2
Q ss_pred HHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc-------cHH
Q psy1725 194 ILSILSP-ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP-------SYT 265 (837)
Q Consensus 194 ~~~~~l~-~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~-------n~~ 265 (837)
.++..+| .++++|+++..+.+...+.+.+...+.-+++|+|+||+|.++++.+.....+++..+.++.+ +..
T Consensus 236 gfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 315 (417)
T COG2223 236 GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV 315 (417)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 3444554 55788999999999999999999999999999999999999999999988888888877764 333
Q ss_pred H----HHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHH
Q psy1725 266 W----MLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLL 340 (837)
Q Consensus 266 ~----l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~ 340 (837)
. ++...++.|+|.|.. ...+..+++ ++-|.+.|+..+..++|...-|..-+...+..| +.-.|++.....+
T Consensus 316 ~~~~~~l~l~~~~G~GnGsv---fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~ 391 (417)
T COG2223 316 VFVAVFLALFVFAGLGNGSV---FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYL 391 (417)
T ss_pred HHHHHHHHHHHHhccCcchh---eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3 445566666666655 334444443 478899999999999999888888888777766 9999998887666
Q ss_pred HHHHHHh
Q psy1725 341 AFACICP 347 (837)
Q Consensus 341 ~~~~~~~ 347 (837)
+..+..+
T Consensus 392 ~a~v~~~ 398 (417)
T COG2223 392 VALVLTW 398 (417)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=87.40 Aligned_cols=153 Identities=9% Similarity=0.074 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhccc--------HHH
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAPS--------YTW 266 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~n--------~~~ 266 (837)
+.....+.+.+|.+......+...|....-+.++++|.++|+ +||++.+..+.++..++.++.+++.. ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 334455566789999999999999999999999999999995 89999999999999999988877521 233
Q ss_pred HHHHHHHHHhhhchH-HHHHHHHHhccCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cChHHHHHHH
Q psy1725 267 MLFLRGLVGFAIGCV-PQSVTLYAEFLPSK---QRAKCVVLLDCFWALGACFEVLLALIVMPT-------LGWKWLLALS 335 (837)
Q Consensus 267 l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~---~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-------~gWr~~f~i~ 335 (837)
.+++-++..+|.|+. +...+...|.++++ +|-.+..++..+.++|.++++++...+.+. .+|.+.|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 566777778899998 88888889988754 366788888899999999999988888643 3699999998
Q ss_pred HHHHHHHHHHHhh
Q psy1725 336 TAPLLAFACICPW 348 (837)
Q Consensus 336 ~i~~~~~~~~~~~ 348 (837)
++..++.+++...
T Consensus 168 ~i~m~ia~lvf~~ 180 (654)
T TIGR00926 168 AILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHH
Confidence 8766665555443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.1e-07 Score=98.32 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------HHHHHH-HHHHHHHHHHHHHhhhhCChHHHHH
Q psy1725 176 KLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQAL--------TTTIVF-LGMMLSSTFWGYVSDRYGRKQALTL 246 (837)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~--------i~s~~~-lg~~vg~li~g~lsd~~GRr~vl~~ 246 (837)
..++..+..+|+........+.....|-++.++.+.+... ...+.. .++..|-++...+.|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5577888889988888888888888888887774332222 222222 2333466778889999999999999
Q ss_pred HHHHHHHHHHHHHhccc----HHHHHHHHHHHHhhhchH--HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 247 CAVLLFYYGILSSLAPS----YTWMLFLRGLVGFAIGCV--PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLAL 320 (837)
Q Consensus 247 ~~~l~~i~~i~~a~a~n----~~~l~i~R~l~G~g~g~~--~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~ 320 (837)
+.+++++..+..+...| -..++++-.+..+....- .+...+-+|.+|.+-|+..-|+..+..-+|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999999999887 233444444555433222 333344499999999999999999999999999999999
Q ss_pred HHhc-----ccChHHHHHHHHHHHHHHHHHHhhccCCc
Q psy1725 321 IVMP-----TLGWKWLLALSTAPLLAFACICPWLPESA 353 (837)
Q Consensus 321 ~l~~-----~~gWr~~f~i~~i~~~~~~~~~~~~pesp 353 (837)
.+.+ ..+-|+.|++.+...++..+..+++|||.
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk 501 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK 501 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence 9988 78999999999999888888888999985
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.2e-06 Score=93.38 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=95.2
Q ss_pred hhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy1725 705 QDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTP 784 (837)
Q Consensus 705 ~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (837)
..........++..++.++.|.++||+|||++++.+.++.+++.+...... +...+.+.-++.+.+.....+..+.+..
T Consensus 52 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~Gi~~~~~~~~~~~~~~ 130 (413)
T PRK15403 52 LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-SMTQFLIARFIQGTSICFIATVGYVTVQ 130 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677888999999999999999999999888888777766543 3333333334443433334566678899
Q ss_pred ccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHH
Q psy1725 785 EVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVA 832 (837)
Q Consensus 785 E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 832 (837)
|.+|.+.|++++++.+....++..++|.+.+.+.+. +....|++.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~ 179 (413)
T PRK15403 131 EAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVM 179 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999888776 555666665554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=82.20 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHH-HHHHHHHh--cccHHHHHHHHHHHHhh
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLF-YYGILSSL--APSYTWMLFLRGLVGFA 277 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~-i~~i~~a~--a~n~~~l~i~R~l~G~g 277 (837)
.+.+.+|.+..+.++......++..++.++.+++.||+||+........+.. +....... ..+.+.++++.++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3445589999999999999999999999999999999984433322222222 22222222 34667778888999999
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL 326 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~ 326 (837)
.+.. +.......|.+| +++|...++.+....+|..+++.+++.+....
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 8887 777777788886 68899999999999999999999999886553
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.6e-06 Score=91.54 Aligned_cols=115 Identities=14% Similarity=0.216 Sum_probs=86.2
Q ss_pred hhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q psy1725 704 TQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYT 783 (837)
Q Consensus 704 ~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (837)
.+..+......++..++.++.++++||+|||+.++.+.++.++..+.+.+...+...+.+..++.+.. .+..+....+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 115 (366)
T TIGR00886 37 AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWI 115 (366)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHH
Confidence 34445556677888999999999999999999999999999888877766542333333333333333 34456677889
Q ss_pred cccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhh
Q psy1725 784 PEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLK 819 (837)
Q Consensus 784 ~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~ 819 (837)
.|.+|.+.|+++.++......+|..+++.+.+.+..
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 116 SFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888888776554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00017 Score=83.35 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHhhhchH-HHHH
Q psy1725 209 TRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPS--YTWMLFLRGLVGFAIGCV-PQSV 285 (837)
Q Consensus 209 s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n--~~~l~i~R~l~G~g~g~~-~~~~ 285 (837)
+....+++.+.+.++..++.+++++++||+|+|+++..+..+..+..++..+.++ ...+++.-++.|++.+.. +...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888999999999999999999999887665555444444333332 223455556678777666 5556
Q ss_pred HHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh
Q psy1725 286 TLYAEFLP-------SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW 328 (837)
Q Consensus 286 ~~i~e~~~-------~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW 328 (837)
+++.|..+ .+.-|...+.+....-+|..+|+.+++.+.+..|+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66677665 33345666777788888999999888877654343
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=93.58 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=118.2
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHH
Q psy1725 204 CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA----------PSYTWMLFLRGL 273 (837)
Q Consensus 204 ~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a----------~n~~~l~i~R~l 273 (837)
+.+|.++...+.......++..++..+.+++.+|++.|+++.++.++.+++.+..... ++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 4689999999999999999999999999999999999999999999999888654311 343445566778
Q ss_pred HHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----h--HHHHHHH-HHHHHHHHH
Q psy1725 274 VGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-----W--KWLLALS-TAPLLAFAC 344 (837)
Q Consensus 274 ~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-----W--r~~f~i~-~i~~~~~~~ 344 (837)
.+++.+.. .+...++++.+|++.+|...++..+...+|..+++.+++.+.+..| . +|...+. .++.++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 88888877 6677888999999999999999999999999999999999987655 3 3433322 234444444
Q ss_pred HHhhccC
Q psy1725 345 ICPWLPE 351 (837)
Q Consensus 345 ~~~~~pe 351 (837)
..+++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4557886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00012 Score=83.41 Aligned_cols=138 Identities=11% Similarity=-0.019 Sum_probs=102.7
Q ss_pred HHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 197 ILSPALHCDW--QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 197 ~~l~~i~~~~--~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
..++...++. +.+....+...+.+..+..+|.++++++.||+++|+++.+..++..+..++..+.++... ++.-++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 4444444443 444445556677777889999999999999999999999999999999998888887654 5666777
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc------ChHHHHHHHHH
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL------GWKWLLALSTA 337 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~------gWr~~f~i~~i 337 (837)
|++.+.. |+..+...+..+++.+. +.+...++ .+|..++|.+.|.+.+.. +.++.|++..+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~-~s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKY-GAAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLL 399 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHH
Confidence 8887777 88888888888755543 33333333 399999999999999853 47777776544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=89.77 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc
Q psy1725 182 GLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA 261 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a 261 (837)
++..++.+.....+-..+---.+|.+-.+...|.....-..|-...-++.+++.+++|+-+++..++.++++=.+.....
T Consensus 377 f~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L 456 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL 456 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh
Confidence 33444455555555555555567777677777777778888888999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHH-HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 262 PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDC-FWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 262 ~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
+|.|+.+-.-+++|+..+.. ....+++++..||+.|..+.++++. ..++|--+|.++||.+.+.++=|..|++.++.+
T Consensus 457 ~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 457 QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 99999999999999999999 8888999999999999999998854 678899999999999999999999999998887
Q ss_pred HHHHHHHhhc
Q psy1725 340 LAFACICPWL 349 (837)
Q Consensus 340 ~~~~~~~~~~ 349 (837)
++.++....+
T Consensus 537 l~~l~~~~~i 546 (618)
T KOG3762|consen 537 LVTLALFISI 546 (618)
T ss_pred HHHHHHHHHh
Confidence 7776665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=83.65 Aligned_cols=131 Identities=9% Similarity=0.020 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh-c-----ccHHHHHHHHHHHHhhhchH-HHHHHHHH
Q psy1725 217 TTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL-A-----PSYTWMLFLRGLVGFAIGCV-PQSVTLYA 289 (837)
Q Consensus 217 ~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~-a-----~n~~~l~i~R~l~G~g~g~~-~~~~~~i~ 289 (837)
..+..+...++.+++|+|+||+|+|+++.++.+...++...... . .+++.+.+.-....++.|.. ..+..++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 34456778888899999999999999999988877776643221 1 24555555443333333433 34444554
Q ss_pred hccCc---------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHHh
Q psy1725 290 EFLPS---------------------KQRAKCVVLLDCFWALGACFEVLLALIVMPT-LGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 290 e~~~~---------------------~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~-~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
+++|. ++-|.+.|+..+...+|..+-|.+-+...+. -++...|++..+.-+++.++.+
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 55542 2567888999999999888888665555443 4588888887765555444443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00087 Score=75.78 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccC
Q psy1725 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLP 293 (837)
Q Consensus 215 ~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~ 293 (837)
...++-+..+.+++++.+++.|+.|.|+.++++...+.+..+..-+ +|-+-++.+-++.|+|.+.. .....+++|..+
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 3478888999999999999999999999999999999988887655 45677888999999999988 666677799999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 294 SKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 294 ~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
++.+.+..++.-.....+.++|.++-
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 99998888877666666655554433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00035 Score=75.27 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHH
Q psy1725 173 FQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-GRKQALTLCAVLL 251 (837)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-GRr~vl~~~~~l~ 251 (837)
..|.+.....+..+.. ++.-.-+|.+-.|-|+|..+.++..+...+......+....+.+|. .+|+..+...+++
T Consensus 209 ~aW~vtLfmGlqS~~~----Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~ 284 (395)
T COG2807 209 LAWQVTLFMGLQSLLY----YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM 284 (395)
T ss_pred hhHHHHHHHHhhHHHH----HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3566655555444433 3444557899999999999999999999999999999999999964 5899999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhc-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ch
Q psy1725 252 FYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEF-LPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTL-GW 328 (837)
Q Consensus 252 ~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~-~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~-gW 328 (837)
.++.+.+.+++.-..++. -++.|+|.|+. +.+...+.+- ..+++-+...++.+....+=..+||.+.|++-|.. +|
T Consensus 285 l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw 363 (395)
T COG2807 285 LVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW 363 (395)
T ss_pred HHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence 999999999886666555 48999998888 9999998554 45566777777878777777788999999998754 59
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy1725 329 KWLLALSTAPLLAFACICP 347 (837)
Q Consensus 329 r~~f~i~~i~~~~~~~~~~ 347 (837)
+...+..+...+...+.-+
T Consensus 364 ~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 364 SAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9988877766555554433
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-06 Score=88.33 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=85.9
Q ss_pred HHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHhhhhhhhhhhccccCCCC
Q psy1725 712 WTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTL-FVARGIIAGVFQAAYVYTPEVYPTP 790 (837)
Q Consensus 712 ~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~p~~ 790 (837)
-.++.+++.+...|.++||.|||++++.+.+...+...+.+... + . ..++. =+..+..-+...+..++++|+++.+
T Consensus 76 sF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-~-F-~afv~aR~l~Gi~kgnl~v~rAiisdV~sek 152 (451)
T KOG2615|consen 76 SFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-N-F-AAFVLARFLGGIFKGNLSVIRAIISDVVSEK 152 (451)
T ss_pred HHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-H-H-HHHHHHHHhhhhccCchHHHHHHHHhhcChh
Confidence 45688899999999999999999999999988888666655543 2 2 22222 2344445577899999999999999
Q ss_pred ccchhhHHHHHHHhhhcchhHHHHHHHhh
Q psy1725 791 LRAVGVGTCSAMARLGAMITPYIAQVLLK 819 (837)
Q Consensus 791 ~r~~~~g~~~~~~~~g~~i~~~~~~~~~~ 819 (837)
.|+.+++..+....+|-++||.+.+++..
T Consensus 153 ~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 153 YRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hccceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999998877
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=91.44 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=79.2
Q ss_pred hHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccch
Q psy1725 720 GIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQ-----SRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAV 794 (837)
Q Consensus 720 g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~ 794 (837)
+.+++|++.||+|||++++++.+..++..+++++... +...+.+..++.+.+.....+.....+.+.|| +.||+
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 4557899999999999999999999999988877632 22222233333334444455666777888998 68999
Q ss_pred hhHHHHHHHhhhcchhHHHHHHHhhcchhhHHHHHHHHhh
Q psy1725 795 GVGTCSAMARLGAMITPYIAQVLLKSSLSIAMTVYGVAAL 834 (837)
Q Consensus 795 ~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (837)
+.|+......+|+.+.+.+...+...+....+++.++..+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~ 195 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFAL 195 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999865555544444444445555555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=66.01 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHH
Q psy1725 188 DSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWM 267 (837)
Q Consensus 188 ~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l 267 (837)
.+..+..+++.+|.+++|.++|..+.+|+.+..++||.+|.+...++.++..+++.+..+.+...+..+.|++.++.+..
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46778889999999999999999999999999999999999999999999888999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=86.35 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC---------hHHHHH
Q psy1725 177 LSLYTGLCWMADSMEMTILSILSPALHC-DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR---------KQALTL 246 (837)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~l~~i~~-~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR---------r~vl~~ 246 (837)
.+..+.++.+...+....+...+|.+.+ -+|.+..+.|+..++.++...+..+++|.++|+.-+ |..-.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 3566677777788887777777776654 589999999999999999999999999999998744 333445
Q ss_pred HHHHHHHHHHHHHhcccHHH-HHHHHHHHHhhhchH-HHHHH-HHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 247 CAVLLFYYGILSSLAPSYTW-MLFLRGLVGFAIGCV-PQSVT-LYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 247 ~~~l~~i~~i~~a~a~n~~~-l~i~R~l~G~g~g~~-~~~~~-~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
+...-+++.+..++.++-.. +.+.-...+.+..+. ..+.. -..|. .|+.-+..+++.+....+..+++|.+.+.+.
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 55555666666666663222 111111222333332 22222 22333 4688899999999999999999999999998
Q ss_pred cc---cChHHHHHHHHHHHHHHHHHHhh
Q psy1725 324 PT---LGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 324 ~~---~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
++ ..||++|++.++..++..+.+.+
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 43 37999999998766665554444
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-05 Score=85.79 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=101.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccCC
Q psy1725 709 DLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYP 788 (837)
Q Consensus 709 ~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 788 (837)
..+..-+++++..+.+++++.|+|+-+++..++.+..+=++.+.... +++.+.-+=++-.......+...-.|++.+.|
T Consensus 411 ~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-n~W~vLPieilqgit~aliWaa~~sY~s~vaP 489 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-NPWMVLPIEILQGITHALIWAAIISYASHVAP 489 (618)
T ss_pred hhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-CchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34455578899999999999999999999988777766666555443 55555555566666677788888899999999
Q ss_pred CCccchhhHHHHHHH-hhhcchhHHHHHHHhhc-chhhHHHHHHHHhhcc
Q psy1725 789 TPLRAVGVGTCSAMA-RLGAMITPYIAQVLLKS-SLSIAMTVYGVAALKM 836 (837)
Q Consensus 789 ~~~r~~~~g~~~~~~-~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 836 (837)
++.|+++.++...+. .+|--+|..|.|.+.+. +...+|..+++++++.
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~ 539 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVT 539 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHH
Confidence 999999999776654 48889999999988887 7888999999988764
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00051 Score=66.44 Aligned_cols=126 Identities=13% Similarity=0.150 Sum_probs=101.4
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy1725 197 ILSPALHCD--WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLV 274 (837)
Q Consensus 197 ~~l~~i~~~--~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~ 274 (837)
..+..+.++ -++++..-....++.+....+.+++.+.+.+++|.|+.++++.+.+.+..... +-+|.+.++.+-++.
T Consensus 21 svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~ 99 (156)
T PF05978_consen 21 SVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALL 99 (156)
T ss_pred HHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 334444444 23444444566777788888999999999999999999999999998666543 567889999999999
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM 323 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~ 323 (837)
|++.+.. .....++.+..++++|++..+++-.....+.++|.++..++.
T Consensus 100 G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 100 GFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 777778899999999999999998888888888888776653
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00044 Score=78.19 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=96.5
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhhchH-H
Q psy1725 206 WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP--SYTWMLFLRGLVGFAIGCV-P 282 (837)
Q Consensus 206 ~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~--n~~~l~i~R~l~G~g~g~~-~ 282 (837)
+|-++....+.......+..++.+++.+|++++|+|+++.++.+++.++.++.-+.+ +...+++..++.|+|.+.. +
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 344566667778888888888899999999999999999999999999999888877 7888999999999999888 7
Q ss_pred HHHHHHHhccC-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 283 QSVTLYAEFLP-------SKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 283 ~~~~~i~e~~~-------~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
...++++|..+ .+.-|...+......=+|..++..+.+++..
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776653 2344667777777777888888877766643
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00033 Score=82.17 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a 259 (837)
.+.+..+.............+.+-+..+.+... .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+
T Consensus 299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA 377 (513)
T ss_pred HHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Confidence 333444444444444555566777777766443 5566666667777888889999999999999999999999999888
Q ss_pred hcccHH--------------HHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 260 LAPSYT--------------WMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 260 ~a~n~~--------------~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
...... ...++-++..+..|..+....+.+|.+|.+.|+.+.++.....-+...+-...-..+.+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 378 VVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred HHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 653221 122223333444444466666779999999999999887665555444333333333333
Q ss_pred cChHHHHHHHHH-HHHHHH-HHHhhccCCc
Q psy1725 326 LGWKWLLALSTA-PLLAFA-CICPWLPESA 353 (837)
Q Consensus 326 ~gWr~~f~i~~i-~~~~~~-~~~~~~pesp 353 (837)
.++...|+..+. ..+... .+.+++|||.
T Consensus 458 ~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 458 LGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred ccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 334566655544 344444 4666799984
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00039 Score=81.33 Aligned_cols=176 Identities=13% Similarity=0.148 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-hHHHHHHHHHHHHH
Q psy1725 180 YTGLCWMADSMEMTILSILSPALHC-DWQITR---YQQALTTTIVFLGMMLSSTFWGYVSDRYGR-KQALTLCAVLLFYY 254 (837)
Q Consensus 180 ~~~l~~~~~~~~~~~~~~~l~~i~~-~~~~s~---~~~~~i~s~~~lg~~vg~li~g~lsd~~GR-r~vl~~~~~l~~i~ 254 (837)
...+..++.++.........|.... -|+-+. ...++....+.+|..+|+++.|.+..+++| |+.++++.++..++
T Consensus 314 ~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~ 393 (599)
T PF06609_consen 314 ALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAF 393 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 3334455555555555555555433 344333 256788888999999999999999998886 56666777777665
Q ss_pred HHHHHhc--ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Q psy1725 255 GILSSLA--PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP------- 324 (837)
Q Consensus 255 ~i~~a~a--~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~------- 324 (837)
.-+++.. +|....++.-++.|+|.|.. .+......-.+|++.-|.+.++..+.-.+|..+|..+-.-+..
T Consensus 394 ~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l 473 (599)
T PF06609_consen 394 CGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKEL 473 (599)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhH
Confidence 4444443 47777788899999999988 6666666778899999999999999999988888776543310
Q ss_pred -------------------------------------------------------ccChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 325 -------------------------------------------------------TLGWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 325 -------------------------------------------------------~~gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
..+.||+|++...++++.++..+++
T Consensus 474 ~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl 553 (599)
T PF06609_consen 474 PKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFL 553 (599)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0158899999999999999999999
Q ss_pred cCCcch
Q psy1725 350 PESARY 355 (837)
Q Consensus 350 pesp~~ 355 (837)
+|..++
T Consensus 554 ~d~~~~ 559 (599)
T PF06609_consen 554 GDIDKY 559 (599)
T ss_pred CChHHh
Confidence 876443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.099 Score=59.33 Aligned_cols=163 Identities=12% Similarity=-0.018 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH
Q psy1725 181 TGLCWMADSMEMTILSILSPALHCDWQI-TRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS 259 (837)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~l~~i~~~~~~-s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a 259 (837)
+....++..+..-....+.+-+..+..- +---.+...-.-.+...++.+..|.+.|+..|.++...+.+..-++..+++
T Consensus 7 Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 7 LYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 3455566666666666666655555421 222222222333345566777788899999999998888776544443333
Q ss_pred hc------c-c-----HHHHHHHHHHH-Hhh--hchHHHHHHHH--Hhcc------CcchhhHHHHHHHHHHHHHHHHHH
Q psy1725 260 LA------P-S-----YTWMLFLRGLV-GFA--IGCVPQSVTLY--AEFL------PSKQRAKCVVLLDCFWALGACFEV 316 (837)
Q Consensus 260 ~a------~-n-----~~~l~i~R~l~-G~g--~g~~~~~~~~i--~e~~------~~~~Rg~~~~~~~~~~~lG~~lgp 316 (837)
.. . . -+....+-.+. .+| .-....+..+. .||. ++..+....+...-.--+--+++|
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaP 166 (432)
T PF06963_consen 87 ALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAP 166 (432)
T ss_pred HHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 1 12222222221 222 12223333332 5664 344555666666666777889999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHH
Q psy1725 317 LLALIVMPTLGWKWLLALSTAPLLAFA 343 (837)
Q Consensus 317 ~l~~~l~~~~gWr~~f~i~~i~~~~~~ 343 (837)
++.|.+....+.+...++.+...++.+
T Consensus 167 l~vG~l~t~~s~~~~~~~i~~~N~~S~ 193 (432)
T PF06963_consen 167 LFVGLLMTFASPVIAAIFIAGWNLASV 193 (432)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 999999888888877766665444433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0022 Score=70.72 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=117.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-hhCChHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHH
Q psy1725 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD-RYGRKQALTLCAVLLFYYGIL---SSLAPSYTWMLFLRGLVG 275 (837)
Q Consensus 200 ~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd-~~GRr~vl~~~~~l~~i~~i~---~a~a~n~~~l~i~R~l~G 275 (837)
|+=.+-||++..+...+++.+..|..+|-...|.+.. +.++|+.-.+++.+..++..+ .+...+.+.+...-++.|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3335668999999999999999999999999999887 677788777777776665554 444568888999999999
Q ss_pred hhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccChHHHHHHHHHHHHHHHH
Q psy1725 276 FAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP----------TLGWKWLLALSTAPLLAFAC 344 (837)
Q Consensus 276 ~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~----------~~gWr~~f~i~~i~~~~~~~ 344 (837)
++.|.. ....+.+.|+..+++-|.++|.|.....+..-+|.++|+.+.| ..++-.+|.+.++..++.++
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999 6666777999999999999999999999999999999998753 23466677777765444444
Q ss_pred H
Q psy1725 345 I 345 (837)
Q Consensus 345 ~ 345 (837)
+
T Consensus 393 l 393 (403)
T PF03209_consen 393 L 393 (403)
T ss_pred H
Confidence 3
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.004 Score=69.32 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCc
Q psy1725 216 TTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPS 294 (837)
Q Consensus 216 i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~ 294 (837)
+.-+-.+-..+.-+++.++.+|+.-+.=..+..++..++.++.++++|.+.=+++-++.+++.|.. ..-.. ++..+++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~ 142 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGK 142 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCc
Confidence 333334445555566677778776444455666688889999999999999999999999988887 44444 3446654
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCh--HHHHHHHHHHHHHHHHHHhh-ccC
Q psy1725 295 KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGW--KWLLALSTAPLLAFACICPW-LPE 351 (837)
Q Consensus 295 ~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gW--r~~f~i~~i~~~~~~~~~~~-~pe 351 (837)
..++-|..+.+.+.++|++.-..+.. .++ |..+.+..+..++..+..++ +|.
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35788889999899999887766665 554 77777777666666555555 443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00079 Score=73.60 Aligned_cols=159 Identities=11% Similarity=0.081 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHh
Q psy1725 182 GLCWMADSMEMTILSILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSL 260 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~ 260 (837)
.++.|+...........++.+.+| .|.++.+.+...+.+..+..+|-+++.++..|+-..+++.+..++..+..+..++
T Consensus 242 vl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l 321 (422)
T COG0738 242 VLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL 321 (422)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777777 8889999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 261 APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 261 a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
+++...+. +-++.|+..+.. |+..+.-.+..+ +.....+..-.+..+|.++-|.+-|++.+..|-...+.....++
T Consensus 322 ~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc 398 (422)
T COG0738 322 IGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLC 398 (422)
T ss_pred hcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99955544 456778888888 888888888887 33333444445566788889999999999888877776333333
Q ss_pred HHHH
Q psy1725 340 LAFA 343 (837)
Q Consensus 340 ~~~~ 343 (837)
.+.+
T Consensus 399 ~lyV 402 (422)
T COG0738 399 YLYV 402 (422)
T ss_pred HHHH
Confidence 3333
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=75.25 Aligned_cols=140 Identities=10% Similarity=0.036 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhC-ChHHHHHHHHHHHHHHHHHHhccc---------------------HHHHHHHH
Q psy1725 214 ALTTTIVFLGMMLSSTFWGYVSDRYG-RKQALTLCAVLLFYYGILSSLAPS---------------------YTWMLFLR 271 (837)
Q Consensus 214 ~~i~s~~~lg~~vg~li~g~lsd~~G-Rr~vl~~~~~l~~i~~i~~a~a~n---------------------~~~l~i~R 271 (837)
.|....+.+...+.+++.-++.+++| ||.+..++.++.+++.+...+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 46666666666788888899999999 578889998888888777765443 36677888
Q ss_pred HHHHhhhchH-HHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC--hHHHHHHHHHHHHHHHHHH
Q psy1725 272 GLVGFAIGCV-PQSVTLYAEFLPS--KQRAKCVVLLDCFWALGACFEVLLALIVMPTLG--WKWLLALSTAPLLAFACIC 346 (837)
Q Consensus 272 ~l~G~g~g~~-~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g--Wr~~f~i~~i~~~~~~~~~ 346 (837)
.+.|+..+.. +.-++++++..++ ++.|..+|+++.+..+.+++..+..|.+.+..| =.+.+.+.++..++..+..
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 8899998888 8899999998885 455999999999999999999988887654333 5678888888776666555
Q ss_pred hh-ccCCc
Q psy1725 347 PW-LPESA 353 (837)
Q Consensus 347 ~~-~pesp 353 (837)
++ +|.++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 54 77654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=79.96 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=92.4
Q ss_pred HHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccC
Q psy1725 708 MDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVY 787 (837)
Q Consensus 708 ~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 787 (837)
...-....+..+..+++|++.||+|-|+++..+.+.-+++.+++.+.. +...+.++-++.+.+-+..+ ..+.++...+
T Consensus 66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf 143 (511)
T TIGR00806 66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-SVWHMQLMEVFYSVTMAARI-AYSSYIFSLV 143 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
Confidence 344455678889999999999999999999999999999998888764 34455555566666666666 8899999999
Q ss_pred CCCccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 788 PTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 788 p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
|.+.|++++|+.++...+|.++++.+.+.+...
T Consensus 144 P~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~ 176 (511)
T TIGR00806 144 PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTL 176 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999985543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.6e-07 Score=106.33 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH----hcccH-----H
Q psy1725 195 LSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS----LAPSY-----T 265 (837)
Q Consensus 195 ~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a----~a~n~-----~ 265 (837)
.....+.+.++.+.+.. -+......+...++.++...+.||+|||++++.+.++.+++.+..+ ..++- .
T Consensus 272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445666777776665 2222333344556667777999999999999999999888877765 11121 1
Q ss_pred HHHHHHHHH--HhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHH
Q psy1725 266 WMLFLRGLV--GFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAF 342 (837)
Q Consensus 266 ~l~i~R~l~--G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~ 342 (837)
..+++-.+. +++.+..+....+..|.+|.+.|+.+.++......++.++++.+...+.+..+ |.......++..+..
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 429 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI 429 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 111221222 22223335555667999999999999999998888888888887777666555 433333344445555
Q ss_pred HHHHhhccCCc
Q psy1725 343 ACICPWLPESA 353 (837)
Q Consensus 343 ~~~~~~~pesp 353 (837)
++..+++|||.
T Consensus 430 i~~~~~lpET~ 440 (451)
T PF00083_consen 430 IFVYFFLPETK 440 (451)
T ss_pred hheeEEEeeCC
Confidence 56667799994
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.054 Score=62.16 Aligned_cols=125 Identities=7% Similarity=-0.050 Sum_probs=94.7
Q ss_pred HHHHHHHhCC-----ChhHHHHHHHHHHHHHHHH-HHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc--cc-------
Q psy1725 199 SPALHCDWQI-----TRYQQALTTTIVFLGMMLS-STFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--PS------- 263 (837)
Q Consensus 199 l~~i~~~~~~-----s~~~~~~i~s~~~lg~~vg-~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--~n------- 263 (837)
+-++++.+.+ +.+.+.|+-+...+...+. .++.+.+++|++|++++-+....+.+.-++.++. ++
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~ 105 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPT 105 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCc
Confidence 3455677655 3467899988887766666 8999999999999999998888888777776665 11
Q ss_pred ----------------------HHHHHHHHHHHHhhhchH-H-HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 264 ----------------------YTWMLFLRGLVGFAIGCV-P-QSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 264 ----------------------~~~l~i~R~l~G~g~g~~-~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
.|..-+.-....+-.... + .-.....|+++.+|-.+..+++..+.++|.++++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 106 ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333444544444 4 5667889999999999999999999999999999888
Q ss_pred HHHh
Q psy1725 320 LIVM 323 (837)
Q Consensus 320 ~~l~ 323 (837)
.++.
T Consensus 186 ~~~~ 189 (472)
T TIGR00769 186 KYFS 189 (472)
T ss_pred HHHH
Confidence 8876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00049 Score=76.11 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCChHHHH-HHHHHHHHHHHHHHhcccHHHHH--
Q psy1725 196 SILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGRKQALT-LCAVLLFYYGILSSLAPSYTWML-- 268 (837)
Q Consensus 196 ~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GRr~vl~-~~~~l~~i~~i~~a~a~n~~~l~-- 268 (837)
...++++..++|++....+.+--.-.+...+-+++.|..+|| ||||+.++ ++.+...++.++.+++.++..++
T Consensus 52 lsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred hccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 344566678889988887777777777777889999999994 89766555 55555667777777776555432
Q ss_pred ----------HHHHHHH-----hhhchH-HHHHHHHHhccCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHhcccChHHH
Q psy1725 269 ----------FLRGLVG-----FAIGCV-PQSVTLYAEFLPSKQRAK-CVVLLDCFWALGACFEVLLALIVMPTLGWKWL 331 (837)
Q Consensus 269 ----------i~R~l~G-----~g~g~~-~~~~~~i~e~~~~~~Rg~-~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~ 331 (837)
+.-++.| ++.-.. .++-+++.|...++++.+ +.+++..+.++|.++|..++++ .+|+-.
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y----~~~~~~ 207 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY----LGLYKI 207 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc----cCceEE
Confidence 2333344 344455 778889999998887777 9999999999999999988874 366543
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.028 Score=66.13 Aligned_cols=155 Identities=13% Similarity=0.083 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcccH--------
Q psy1725 194 ILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAPSY-------- 264 (837)
Q Consensus 194 ~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~n~-------- 264 (837)
.....+..+.+++|.+...+.-..+.|.-.....+++++.++|- +||-+++.++.++..++.++..++...
T Consensus 56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC 135 (571)
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 35677788899999988888888889988889999999999996 689999999999988886654443222
Q ss_pred -----------------HHHHHHHHHHHhhhchH-HHHHHHHHhccC---c-chhh--HHHHHHHHHHHHHHHHHHHHHH
Q psy1725 265 -----------------TWMLFLRGLVGFAIGCV-PQSVTLYAEFLP---S-KQRA--KCVVLLDCFWALGACFEVLLAL 320 (837)
Q Consensus 265 -----------------~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~---~-~~Rg--~~~~~~~~~~~lG~~lgp~l~~ 320 (837)
..++...-+..+|.|+. +...+.-+|-++ + +.+. ..+..+.....+|..++..+-.
T Consensus 136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~v 215 (571)
T KOG1237|consen 136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLV 215 (571)
T ss_pred cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHH
Confidence 23555666667888888 777777788887 3 2233 6778888888999999888888
Q ss_pred HHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 321 IVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 321 ~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
++-++.+|.+-|.+..+..++.+++++.
T Consensus 216 yiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 216 YIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred hhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 8878899999999887765555554443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=55.65 Aligned_cols=70 Identities=16% Similarity=0.347 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHH
Q psy1725 182 GLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLL 251 (837)
Q Consensus 182 ~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~ 251 (837)
...+++........-+.++...++.|++..+++.+.++-.+...++++++|.++||+||++..+....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 3456666667777888888888899999999999999999999999999999999999888877666553
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0019 Score=74.52 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh----hCChHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDR----YGRKQALTLCAVLLF 252 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~----~GRr~vl~~~~~l~~ 252 (837)
+...++++++.....+.+...+|.+-++ .|.+..+.+...+.+.++.+++.++.|+++|| ..+|..+...+.++.
T Consensus 275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~ 354 (495)
T KOG2533|consen 275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA 354 (495)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5566677788888888888888888887 56899999999999999999999999999999 778888888877776
Q ss_pred HHH-HHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhh-HHHHHHHHHHHHHHHHH-HHHHHHHhcccCh
Q psy1725 253 YYG-ILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRA-KCVVLLDCFWALGACFE-VLLALIVMPTLGW 328 (837)
Q Consensus 253 i~~-i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg-~~~~~~~~~~~lG~~lg-p~l~~~l~~~~gW 328 (837)
+.. +......+.......-...+.+.+.. +......++...++.|. ...++...+.+.+.+++ ++.-+.....++|
T Consensus 355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~ 434 (495)
T KOG2533|consen 355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGW 434 (495)
T ss_pred HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhh
Confidence 655 43333332333332222233444444 55566666666554444 44445544444444433 3334444555788
Q ss_pred HHHHHHHH
Q psy1725 329 KWLLALST 336 (837)
Q Consensus 329 r~~f~i~~ 336 (837)
-+.|+...
T Consensus 435 ~~~f~~~~ 442 (495)
T KOG2533|consen 435 GAVFYMLV 442 (495)
T ss_pred hhHHHHHH
Confidence 88885544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=83.69 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=86.6
Q ss_pred HHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHh---------------------------------
Q psy1725 710 LLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQ--------------------------------- 756 (837)
Q Consensus 710 ~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 756 (837)
.....++.+++.++.+++.||.|||+.+.++.+++++..+++++..-
T Consensus 74 ~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 153 (633)
T TIGR00805 74 NGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQAL 153 (633)
T ss_pred eehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCc
Confidence 33456778888899999999999999999999999999888765420
Q ss_pred ---------------h--hhHHHHHHHHHHHHHhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhh
Q psy1725 757 ---------------S--RAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLK 819 (837)
Q Consensus 757 ---------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~ 819 (837)
+ ...+.+.-++.+++.+..+++...++.|.+|++.|++..|+.+....+|..+++.+.+++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 154 RPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred cccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 01112222334444446678889999999999999999999999999999999999998775
Q ss_pred c
Q psy1725 820 S 820 (837)
Q Consensus 820 ~ 820 (837)
.
T Consensus 234 ~ 234 (633)
T TIGR00805 234 I 234 (633)
T ss_pred c
Confidence 3
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00058 Score=76.76 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=89.6
Q ss_pred HhhchhhHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhhhhhhhccccCCCC-
Q psy1725 714 TLAEFPGIFATIFVIEK-FGRKRTMAVQFVIFTACVSFLFICT-QSRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP- 790 (837)
Q Consensus 714 ~~~~~~g~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~- 790 (837)
+..--...+++||++|| +|+|+.+..+.+++.+..++++... .....+.+.+.+...+.+..-+-.-.+.+|++|++
T Consensus 71 ~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 71 GSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 33444567889999999 5999999999999999999988874 33445555555555667777888999999999864
Q ss_pred -ccchhhHHHHHHHhhhcchhHHHHHHHhhc-chhhHHHH
Q psy1725 791 -LRAVGVGTCSAMARLGAMITPYIAQVLLKS-SLSIAMTV 828 (837)
Q Consensus 791 -~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~ 828 (837)
.|-.+.++..+.-++|++++|.+.+++.+. +....|..
T Consensus 151 prrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 151 PRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred cccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 578888888999999999999999999886 43333333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00015 Score=80.34 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=91.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccccC
Q psy1725 708 MDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEVY 787 (837)
Q Consensus 708 ~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 787 (837)
+......++..++..++|++.||++||+++.++..+-.++.+...+.. ..+.+++.=.+++.+-.+..++...+++|.|
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f 150 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-HFWQVLLCRGFVGIGEASYSPIAPSLIADSF 150 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence 444556678888999999999999999999999999999998888874 3344444556676777788999999999999
Q ss_pred CCCccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 788 PTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 788 p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
|...|++++++.+.+..+|+.+|-....++.+.
T Consensus 151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred cchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 999999999999999998887776666555544
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0041 Score=71.26 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=109.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHH-HHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhc
Q psy1725 201 ALHCDWQITRYQQALTTTIVFLGMMLSSTFWG-YVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIG 279 (837)
Q Consensus 201 ~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g-~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g 279 (837)
.+...++++.++.+...+.......+++++.. .+...+|-|++...|++.-.+...+.+++++.|+++....+.++...
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 44567899999999888888888888888777 77778999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 280 CVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322 (837)
Q Consensus 280 ~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l 322 (837)
..+...+.++-+..++++|+..++....-.+..+++|.+-+.+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 8899999999999999999999999999999999999887766
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0061 Score=63.81 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=95.1
Q ss_pred ceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccchhhhHHHHHHHhhchhhHHHHHHHHHhhCC
Q psy1725 654 VCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNTQDYMDLLWTTLAEFPGIFATIFVIEKFGR 733 (837)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~d~~gr 733 (837)
..+...|....|.|.+-+..+. .+.+.........++..+| +++|++.|++|.
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~--------------------------sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp 65 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGY--------------------------SQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP 65 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCC--------------------------CHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch
Confidence 4445667788888887555444 2333333334445666655 778999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHhhh-hhhhhhhccccCCCCccchhhHHHHHHHhhhc
Q psy1725 734 KRTMAVQFVIFTACVSFLFICTQS-----RAYLTVTLFVARGIIAGV-FQAAYVYTPEVYPTPLRAVGVGTCSAMARLGA 807 (837)
Q Consensus 734 r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~ 807 (837)
|..++++.+...+....++..... ..+....+.+....+.++ .........+.||. .||++.|+.-....+++
T Consensus 66 ~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSa 144 (250)
T PF06813_consen 66 WVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSA 144 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHH
Confidence 999999988888888777666532 122332223333333333 35556667799995 79999999999999999
Q ss_pred chhHHHHHHHhhcc
Q psy1725 808 MITPYIAQVLLKSS 821 (837)
Q Consensus 808 ~i~~~~~~~~~~~~ 821 (837)
.+-..+...+.+.+
T Consensus 145 ai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 145 AIFTQIYSAFFGDD 158 (250)
T ss_pred HHHHHHHHHHcCCC
Confidence 99888887776654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0053 Score=68.87 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc--c-c------HHHHHHHHHHHHhhhchH-HHHHHHHHhccCcc---hhhHHHHHHHHHH
Q psy1725 242 QALTLCAVLLFYYGILSSLA--P-S------YTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSK---QRAKCVVLLDCFW 308 (837)
Q Consensus 242 ~vl~~~~~l~~i~~i~~a~a--~-n------~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~---~Rg~~~~~~~~~~ 308 (837)
++++++.+++.+|.++..++ + . .+.++++-++.++|.|+. +...+..+|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46778888888888884333 2 2 257889999999999999 99999999999875 4667788889999
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhc
Q psy1725 309 ALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWL 349 (837)
Q Consensus 309 ~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~ 349 (837)
.+|..+++.+.+++.++.+|.+.|++.++..++.++..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988776666655543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=59.82 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q psy1725 197 ILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGF 276 (837)
Q Consensus 197 ~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~ 276 (837)
+.+-.+-.+++....+++.+.-.-+-...++..+.|-|+|+-|||+.-+.-++.+.++++ .-.++.|-.++++|.+.|+
T Consensus 58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGI 136 (454)
T ss_pred ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhH
Confidence 334455567777777777665555555667778889999999999965444444433332 3456788999999999999
Q ss_pred hhchH-HHHHHHH-Hhcc
Q psy1725 277 AIGCV-PQSVTLY-AEFL 292 (837)
Q Consensus 277 g~g~~-~~~~~~i-~e~~ 292 (837)
+.+.. +.--+++ .|..
T Consensus 137 aTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 137 ATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 99988 6666766 7766
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.58 Score=53.54 Aligned_cols=107 Identities=11% Similarity=0.122 Sum_probs=65.2
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHhh
Q psy1725 707 YMDLLWTTLAEFPGIFATIFVIEKFGRK-RTMAVQFVIFTACVSFLFICT-----------QSRAYLTVTLFVARGIIAG 774 (837)
Q Consensus 707 ~~~~~~~~~~~~~g~~~~~~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 774 (837)
...+...+++-++|..++.+..- -++| +.+.+..+.=.+...++.++. .+.....+..++.++-++-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 35566677888889887654322 1223 123333333333333333222 1122233334444455556
Q ss_pred hhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHH
Q psy1725 775 VFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA 814 (837)
Q Consensus 775 ~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 814 (837)
..++...+..+.++++.|..+..+.+.+..+|-.+|..+.
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999998888888887765
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.058 Score=60.27 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=80.7
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH--HH---HHHHHHHhcccHHHHHHHHHHHHhhhch
Q psy1725 206 WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL--LF---YYGILSSLAPSYTWMLFLRGLVGFAIGC 280 (837)
Q Consensus 206 ~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l--~~---i~~i~~a~a~n~~~l~i~R~l~G~g~g~ 280 (837)
+.-..++..+...+|.+|-.++---.. +. |+ |++.+.+.+- .. +...+.-+.+|.+.+++.-+..|+.+|+
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 333466788888888887666643221 11 33 3333333322 22 2223334567999999999999988888
Q ss_pred H-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 281 V-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322 (837)
Q Consensus 281 ~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l 322 (837)
. ..+...+.|-.++++|-.+++..+.+-++|.+++.+++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7 88888888888999999999999999999999999888765
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.84 Score=49.96 Aligned_cols=136 Identities=16% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhCChHHHH-HHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSD-----RYGRKQALT-LCAVLL 251 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd-----~~GRr~vl~-~~~~l~ 251 (837)
+..+.+.+.+.+.-....+ .+|.+-+.=|+|-++.+...-+|. =..--++|.|+.| |+|||+.-+ -+..+.
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll 109 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL 109 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence 3344455777777777777 888888877887776654433322 1123468999999 999886543 233333
Q ss_pred HHHHHHHHh-----------cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 252 FYYGILSSL-----------APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 252 ~i~~i~~a~-----------a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
+......+. .+|...+...-++.-+.++.- -.+-++.-.+..+++-|.+... ..+|.-.|..++
T Consensus 110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~----q~Vg~~~GyfL~ 185 (510)
T KOG3574|consen 110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC----QSVGQTAGYFLG 185 (510)
T ss_pred HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH----HHHHHhhhHHhh
Confidence 333333222 234444444556666776766 6666777677777887766554 444555444444
Q ss_pred H
Q psy1725 320 L 320 (837)
Q Consensus 320 ~ 320 (837)
.
T Consensus 186 ~ 186 (510)
T KOG3574|consen 186 N 186 (510)
T ss_pred c
Confidence 4
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.49 Score=53.73 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=40.4
Q ss_pred HHhhhhhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 771 IIAGVFQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 771 ~~~~~~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
.+..-+....+.-+.+-.+..-|+.+-+.|.++++|+-.-..++-.+.|.
T Consensus 418 ~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 418 MSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 33344555666777888899999999999999999999888888777774
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.05 Score=58.47 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchHHHHHHHHHhccCcchhhHHH
Q psy1725 222 LGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCV 301 (837)
Q Consensus 222 lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~ 301 (837)
-.+.++-.+.=.+.|..--||+++.-.+......++.-+.++.+.+=+.-++-|...++--.-++++-+.++|+++-++.
T Consensus 53 YSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 53 YSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHH
Confidence 34555566666789988889999999999999999999999999999999999988777777778887888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cChHHHHHHHHHHHHHHHHHHhhccCCcch
Q psy1725 302 VLLDCFWALGACFEVLLALIVMPT--LGWKWLLALSTAPLLAFACICPWLPESARY 355 (837)
Q Consensus 302 ~~~~~~~~lG~~lgp~l~~~l~~~--~gWr~~f~i~~i~~~~~~~~~~~~pesp~~ 355 (837)
+...++.-.|-.+|..++-.+... .+.+..-++......+..++.+++|..+|.
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rS 188 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRS 188 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchh
Confidence 999999999999999888887643 334444455555555566666777765543
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=3.1 Score=46.51 Aligned_cols=100 Identities=6% Similarity=0.092 Sum_probs=58.4
Q ss_pred HHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy1725 713 TTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFIC--------TQSRAYLTVTLFVARGIIAGVFQAAYVYTP 784 (837)
Q Consensus 713 ~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (837)
.++..++|..++.++-+. +||.+.+.+ ..=.+..-++..+ .++..+..+...+.++.++-..++...+.+
T Consensus 292 fN~~d~vG~~~a~~~~~~-~~r~l~i~v-~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aP 369 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWP-DPRKLTIPV-LLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAP 369 (406)
T ss_pred hHHHHHhhhhhhhcccCC-CCceehHHH-HHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcC
Confidence 556677775555443332 344444333 3333333333322 133444455555555556666788899999
Q ss_pred ccCCCCccchhhHHHHHHHhhhcchhHHHH
Q psy1725 785 EVYPTPLRAVGVGTCSAMARLGAMITPYIA 814 (837)
Q Consensus 785 E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 814 (837)
+.+|++.+..+..+...+...|-+.|..+.
T Consensus 370 k~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 370 KQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999988887777777666666665544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.066 Score=64.23 Aligned_cols=106 Identities=10% Similarity=0.111 Sum_probs=73.9
Q ss_pred hhchhhHHHHHHHHHh-hCCchhHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy1725 715 LAEFPGIFATIFVIEK-FGRKRTMAVQFVIFTACVSFLFICTQS-------RAYLTVTLFVARGIIAGVFQAAYVYTPEV 786 (837)
Q Consensus 715 ~~~~~g~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 786 (837)
...-+..++++++.|+ +||++.++++.++..+...++.+.... .....+.+.+..++.++.-+..-....|.
T Consensus 34 ~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdq 113 (654)
T TIGR00926 34 YLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQ 113 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhh
Confidence 3344556677888995 799999998888877777666553210 01122333444445556667788888888
Q ss_pred CCCC---ccchhhHHHHHHHhhhcchhHHHHHHHhhc
Q psy1725 787 YPTP---LRAVGVGTCSAMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 787 ~p~~---~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~ 820 (837)
++.+ .|...+.+.....++|+++++.+.+++.+.
T Consensus 114 f~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 114 FEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8753 467788899999999999999999988743
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.3 Score=51.90 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHH-HHHHH-HHHHHHHhccc----H-HHHHHHHHHHHhh
Q psy1725 205 DWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLC-AVLLF-YYGILSSLAPS----Y-TWMLFLRGLVGFA 277 (837)
Q Consensus 205 ~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~-~~l~~-i~~i~~a~a~n----~-~~l~i~R~l~G~g 277 (837)
-+|.+....+.+.++|++|.++|..+.+++.++--|+...+-. ..+.+ ++..+...+.. . ..++..-++.|+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999887443233221111 11111 11111111111 1 1123334455666
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-hHHHHHHH
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-PTLG-WKWLLALS 335 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-~~~g-Wr~~f~i~ 335 (837)
.|+. |....+..+.. .++-|...|-......+|.++|.++.+++. ...| ++..+.+.
T Consensus 124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a 183 (521)
T PRK03612 124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTG 183 (521)
T ss_pred HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6666 55444444322 123456778888899999999999987764 3455 33444333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.53 E-value=5.9 Score=45.15 Aligned_cols=126 Identities=6% Similarity=-0.053 Sum_probs=91.2
Q ss_pred HHHHHHHhCC---ChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcc---------c--
Q psy1725 199 SPALHCDWQI---TRYQQALTTTIVFL-GMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAP---------S-- 263 (837)
Q Consensus 199 l~~i~~~~~~---s~~~~~~i~s~~~l-g~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~---------n-- 263 (837)
+-.+.+.+.+ .++.+.++-+.+.+ +..+..++.+.+++++-|.+++-..+..+..+-+++|+.- +
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~ 125 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPE 125 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHH
Confidence 3345666644 46778888888888 8889999999999999999999998888888888877641 1
Q ss_pred ---------------------HHHHHHHHHHHHhhhchH-H-HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 264 ---------------------YTWMLFLRGLVGFAIGCV-P-QSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLAL 320 (837)
Q Consensus 264 ---------------------~~~l~i~R~l~G~g~g~~-~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~ 320 (837)
.|..-+.-.+.=+-.+.. + .-.....|+...+|-.+..++++.+.+++..++..+..
T Consensus 126 ~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 126 FSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222323333 2 33455678999999999999999999999999888888
Q ss_pred HHhc
Q psy1725 321 IVMP 324 (837)
Q Consensus 321 ~l~~ 324 (837)
++.+
T Consensus 206 ~~~k 209 (509)
T COG3202 206 WLSK 209 (509)
T ss_pred HHhh
Confidence 8765
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.68 Score=52.64 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGIL 257 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~ 257 (837)
++..+++..+-++..-..+..+..+...-|+++..++..-+.-.+....|.+++.++.+|+|..+.=+++.....++..+
T Consensus 260 vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~ 339 (432)
T PF06963_consen 260 VFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL 339 (432)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 55555555555555444555555666666999999999999999999999999999999999888877777665544444
Q ss_pred HHhc---c-------cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 258 SSLA---P-------SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322 (837)
Q Consensus 258 ~a~a---~-------n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l 322 (837)
+..+ + +...++.+-.+.=+|-=+. -...-++.|..|+++||...|.-.....+-.++-.+++-.+
T Consensus 340 ~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 340 CVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4322 2 2222333333333333344 45555669999999999999998888877777666665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.93 Score=51.71 Aligned_cols=101 Identities=22% Similarity=0.406 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHhh---hhCChHHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHh
Q psy1725 218 TIVFLGMMLSSTFWGYVSD---RYGRKQALTLCAVLLFYYGILSSLA------------------PSYTWMLFLRGLVGF 276 (837)
Q Consensus 218 s~~~lg~~vg~li~g~lsd---~~GRr~vl~~~~~l~~i~~i~~a~a------------------~n~~~l~i~R~l~G~ 276 (837)
-.-.+|..++..+.+.+++ ++||++.+.++.++..+..++.-+. +++...++.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 3344455566666777776 4899999999999988888776554 246678888899999
Q ss_pred hhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy1725 277 AIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 277 g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~ 319 (837)
+-+.. +..+.++++.+ +++|..+.+++..-..++..++-...
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 99998 88888889988 78899999998888887777655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=94.83 E-value=10 Score=43.99 Aligned_cols=116 Identities=11% Similarity=0.057 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc--c-------c---------------
Q psy1725 209 TRYQQALTTTIVFL-GMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--P-------S--------------- 263 (837)
Q Consensus 209 s~~~~~~i~s~~~l-g~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--~-------n--------------- 263 (837)
..+.+..+-....+ +..+...+...++++++|.+++-+....+...-.+.++. | +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 56677777775555 556678889999999999999988887777766666653 1 1
Q ss_pred -------HHHHHHHHHHHHhhhchH-H-HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 264 -------YTWMLFLRGLVGFAIGCV-P-QSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 264 -------~~~l~i~R~l~G~g~g~~-~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
.|.+.+.-.+.-+-++.. + .-.....|+++.+|-.+..+++..+..+|.+++..+...+.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222222222332 3 235667899999999999999999999999999888887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.29 Score=56.10 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHhh
Q psy1725 208 ITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA----------PSYTWMLFLRGLVGFA 277 (837)
Q Consensus 208 ~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a----------~n~~~l~i~R~l~G~g 277 (837)
.++...+....+..++..+|..++....-+..-|+++.++.++.++..+.-..- ++.+..+.--++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 778888888888888899999999888888888889888888877766642211 1222233344555555
Q ss_pred hchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----h---HHHHHHHHHHHHHHHHHHhh
Q psy1725 278 IGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-----W---KWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 278 ~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-----W---r~~f~i~~i~~~~~~~~~~~ 348 (837)
.+.. -+....++|++|+..-|...++..+..++|..++..++..+.+..+ + .+..++..+..++.+....+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555 5666677999999999999999999999999999999998875443 2 22334444455555555556
Q ss_pred ccCC
Q psy1725 349 LPES 352 (837)
Q Consensus 349 ~pes 352 (837)
+|+.
T Consensus 412 Lp~~ 415 (433)
T PF03092_consen 412 LPPQ 415 (433)
T ss_pred cCCC
Confidence 7764
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.35 Score=50.69 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=72.9
Q ss_pred HHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy1725 708 MDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQ-SRAYLTVTLFVARGIIAGVFQAAYVYTPEV 786 (837)
Q Consensus 708 ~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 786 (837)
.......+....+.++.|.+.||.|||+.++.+.....+..+...+... ............+.......+....+..|.
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 122 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW 122 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444455666666689999999999998887777653333333333322 122222222223344446778889999999
Q ss_pred CCC-CccchhhHHHHH-HHhhhcchhHHHHHHHhhc
Q psy1725 787 YPT-PLRAVGVGTCSA-MARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 787 ~p~-~~r~~~~g~~~~-~~~~g~~i~~~~~~~~~~~ 820 (837)
+|. ..|+...+.... ...++..+++.+.+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 123 FPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 677888888777 5777888888776665543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.1 Score=43.51 Aligned_cols=111 Identities=12% Similarity=0.036 Sum_probs=79.0
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy1725 707 YMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYTPEV 786 (837)
Q Consensus 707 ~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 786 (837)
+....+......+..+++..+++++|.|+.++++.+...+-..... ..+...+.....+.++.....+...-.+..+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~--~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF--YPNSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 4455555566667778889999999999999998877765444432 22344444455556566666666666777888
Q ss_pred CCCCccchhhHHHHHHHhhhcchhHHHHHHHhh
Q psy1725 787 YPTPLRAVGVGTCSAMARLGAMITPYIAQVLLK 819 (837)
Q Consensus 787 ~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~ 819 (837)
-..+.|++-.++.-.+.+.+.++|..+.-.+..
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999888888777654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.48 Score=54.20 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=74.1
Q ss_pred hHHHHHHHhhchhhHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHhhhhhhhhhh
Q psy1725 707 YMDLLWTTLAEFPGIFATIFVIEKFGR-KRTMAVQFVIFTACVSFLFICTQS---RAYLTVTLFVARGIIAGVFQAAYVY 782 (837)
Q Consensus 707 ~~~~~~~~~~~~~g~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (837)
.+......++..++.++.++-..|.+. |+.++++.+++.+.+++....... ..++.+..=+..++..+...+.-.|
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y 153 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAY 153 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHH
Confidence 345556778888999999999999987 888899999999998887444422 2223222223333444667788889
Q ss_pred ccccCCCCccchhhHHHHHHHhhhcchhHHHHH
Q psy1725 783 TPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQ 815 (837)
Q Consensus 783 ~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~ 815 (837)
.+..--.+.|.++++..+...-+|.++||.+-.
T Consensus 154 ~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 154 IADASTVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 998777778888877776655555555555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=91.62 E-value=3.8 Score=46.91 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCh--HHHHHHH--HHHHHHHHHHHhc---------ccHHHHHHHHHHHHhhhch
Q psy1725 214 ALTTTIVFLGMMLSSTFWGYVSDRYGRK--QALTLCA--VLLFYYGILSSLA---------PSYTWMLFLRGLVGFAIGC 280 (837)
Q Consensus 214 ~~i~s~~~lg~~vg~li~g~lsd~~GRr--~vl~~~~--~l~~i~~i~~a~a---------~n~~~l~i~R~l~G~g~g~ 280 (837)
-....+|.+|=.+|-.+..+.. .-++| ++++.+. +++.-.-++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 3455556666666655433221 11333 3333222 2233333445432 4667778889999999999
Q ss_pred H-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1725 281 V-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIV 322 (837)
Q Consensus 281 ~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l 322 (837)
. +.++.+..+..++++|..+..+...+..+|..+|..++..+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 67777777888899999999999999999999998887654
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.57 Score=52.50 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-hHHHHHHHHHHHHHHHHHHhc----ccHHHHH
Q psy1725 194 ILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGR-KQALTLCAVLLFYYGILSSLA----PSYTWML 268 (837)
Q Consensus 194 ~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GR-r~vl~~~~~l~~i~~i~~a~a----~n~~~l~ 268 (837)
.+...+....+.-|.+....|++.....++..+|+.+.|.+.||... |.+.++......++.+..... ...+.++
T Consensus 284 ~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~ 363 (480)
T KOG2563|consen 284 SLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVF 363 (480)
T ss_pred HHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehh
Confidence 33444443344456566789999999999999999999999999863 555555555555553222211 1334455
Q ss_pred HHHHHHHhhhchH-HHHHHHHHhcc-CcchhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy1725 269 FLRGLVGFAIGCV-PQSVTLYAEFL-PSKQRAKCVVLLD-CFWALGACFEVLLALIV 322 (837)
Q Consensus 269 i~R~l~G~g~g~~-~~~~~~i~e~~-~~~~Rg~~~~~~~-~~~~lG~~lgp~l~~~l 322 (837)
..-.+.|++..+. |...-+-.|.. |..|+. -.|+.. .+...|.++--+.+...
T Consensus 364 ~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~t-SsGll~~~gq~f~~~~~~~~~~~~ 419 (480)
T KOG2563|consen 364 TTCGLLGFFGTGYLPIGFELGVETTYPVAEGT-SSGLLNLSGQIFGVILVFIMGILA 419 (480)
T ss_pred hhHHHHHHhhcCCCCcceeeeeeeccccCCcc-cceeEEeehhHHHHHHHHHHHHHh
Confidence 5666677766665 76666666654 545544 344433 33334444433333333
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.092 Score=57.24 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=3.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHH------------hhhhHHHHHHHHHHHHHhhh
Q psy1725 709 DLLWTTLAEFPGIFATIFVIEKF-GRKRTMAVQFVIFTACVSFLFICT------------QSRAYLTVTLFVARGIIAGV 775 (837)
Q Consensus 709 ~~~~~~~~~~~g~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 775 (837)
.++..+++.++|..++.+..-+. .+|.+.+ ..+.=.+...++..+. .+..+..+..++.++-++-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45577889999999988753221 2444333 2222222222222221 11122222333444445556
Q ss_pred hhhhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHH
Q psy1725 776 FQAAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIA 814 (837)
Q Consensus 776 ~~~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~ 814 (837)
.++...+.++..+++.|..+..+.+.+..+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998898888888888887765
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.82 Score=38.53 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHH
Q psy1725 703 NTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIF 744 (837)
Q Consensus 703 ~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~ 744 (837)
..+......+..+.++++..+.+.++||.+|++..+.....+
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 445566666677899999999999999999998877665543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.59 E-value=5 Score=44.05 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=58.4
Q ss_pred hhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhc-c----ccCCC
Q psy1725 715 LAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYVYT-P----EVYPT 789 (837)
Q Consensus 715 ~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----E~~p~ 789 (837)
+...+...+.|.+.||+|||+..+...++.+++|+.-.. ++...+.+.=++.+......++..=.+. . .-+|.
T Consensus 80 ~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~--~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~ 157 (354)
T PF05631_consen 80 ASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS--SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ 157 (354)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 455555566688999999999999999998888864322 2223333222333333333333322222 2 23566
Q ss_pred CccchhhHHHH-HHHhhhcchhHHHHHHHhhc
Q psy1725 790 PLRAVGVGTCS-AMARLGAMITPYIAQVLLKS 820 (837)
Q Consensus 790 ~~r~~~~g~~~-~~~~~g~~i~~~~~~~~~~~ 820 (837)
+..+...+... ..+.+-++++..+..++.+.
T Consensus 158 ~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 158 EWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 55555555555 33445556666666666554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=88.24 E-value=2.8 Score=48.26 Aligned_cols=102 Identities=4% Similarity=-0.070 Sum_probs=72.2
Q ss_pred chhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHh---h---------------------------hhHHHHHHH
Q psy1725 717 EFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQ---S---------------------------RAYLTVTLF 766 (837)
Q Consensus 717 ~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~---------------------------~~~~~~~~~ 766 (837)
.++...+-+++++|++|+++.-.......+...++++... + .+...++.+
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 3343677789999999999876655555555544444310 0 111123333
Q ss_pred HHHHHHhhhhh-hhhhhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHh
Q psy1725 767 VARGIIAGVFQ-AAYVYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLL 818 (837)
Q Consensus 767 ~~~~~~~~~~~-~~~~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~ 818 (837)
..-.++....+ +.|.+..|++..++-.+-+++..+.+++|.++++.+..++.
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555 89999999999999999999999999999999999998876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=85.39 E-value=0.26 Score=58.00 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhC--ChHHHHHHHHHHHH
Q psy1725 178 SLYTGLCWMADSMEMTILSILSP-ALHCDWQITRYQQALTTTIVFL-GMMLSSTFWGYVSDRYG--RKQALTLCAVLLFY 253 (837)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~~~~l~-~i~~~~~~s~~~~~~i~s~~~l-g~~vg~li~g~lsd~~G--Rr~vl~~~~~l~~i 253 (837)
.....++.....+....+..++| .++.+|+++..+.+++..+..+ +.++|.+++|.+..|+. .|.......+...+
T Consensus 307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v 386 (539)
T PF03137_consen 307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHH
Confidence 34444555555555656666665 5677899999999988877666 88899999999999874 34444333333332
Q ss_pred HHHH--------HH------hc----------------------------------------ccHHHHHHHHHHHHhhhc
Q psy1725 254 YGIL--------SS------LA----------------------------------------PSYTWMLFLRGLVGFAIG 279 (837)
Q Consensus 254 ~~i~--------~a------~a----------------------------------------~n~~~l~i~R~l~G~g~g 279 (837)
..++ |- .. +++..+++.-++.-+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 2222 00 00 012223333333333333
Q ss_pred hH-HHHHHHHHhccCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q psy1725 280 CV-PQSVTLYAEFLPSKQRAKCVVLLDCF-WALGACFEVLLALIVMPT 325 (837)
Q Consensus 280 ~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~-~~lG~~lgp~l~~~l~~~ 325 (837)
.. .+...++-..+++++|+.++|+.... -.+|.+-||++-|.+.+.
T Consensus 467 ~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp ------------------------------------------------
T ss_pred hcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 33 44444456888999999999988654 456999999999988764
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=84.93 E-value=47 Score=33.68 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=26.7
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q psy1725 290 EFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAP 338 (837)
Q Consensus 290 e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~ 338 (837)
|..-.++|.+.-.......-++.++|.++++.+.+..+. +..++.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~ 200 (209)
T PF06912_consen 153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALL 200 (209)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 333334443444455556666777777777777666664 444444443
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=84.33 E-value=6.7 Score=42.36 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccC--cchh
Q psy1725 221 FLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLP--SKQR 297 (837)
Q Consensus 221 ~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~--~~~R 297 (837)
++..+...++.+.+..++|-|++++++...+..... .-+=+.+..++-.-.+.|+|.+.. ..-.++++++-. .++|
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~ 146 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR 146 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence 344555566666889999999999999888765433 334467888888999999998876 444444443332 1334
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHH
Q psy1725 298 ---------AKCVVLLDCFWALGACFEVLLA 319 (837)
Q Consensus 298 ---------g~~~~~~~~~~~lG~~lgp~l~ 319 (837)
.+..+.+.+.+..+..+|..++
T Consensus 147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~is 177 (390)
T KOG3097|consen 147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLIS 177 (390)
T ss_pred hhhccCceeeeehhHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444443
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=84.17 E-value=45 Score=35.08 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=19.4
Q ss_pred CcchHHHHHhhhhhhHHHHhhhccc
Q psy1725 540 TLGWKWLLALSTAPLLAFACICPWL 564 (837)
Q Consensus 540 ~~~w~~~~~~~~i~~~~~~~~~~~~ 564 (837)
+.+|++.+....++.++.++++...
T Consensus 37 ~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 37 TNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999998888887777776665
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=81.22 E-value=4.8 Score=34.59 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHh
Q psy1725 703 NTQDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQ 756 (837)
Q Consensus 703 ~~~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 756 (837)
..+..+....+.++.++|.+.+.++.++.++++.+..+.+.+.+....+.+...
T Consensus 26 ~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 26 LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455556677888888888888888877788899999999998888887763
|
Note that many members are hypothetical proteins. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=80.64 E-value=9.8 Score=39.88 Aligned_cols=100 Identities=18% Similarity=0.332 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHH----HHHHHHHHHHHHH-Hhcc----cHHHHHHHHHHHHhhhchH-
Q psy1725 213 QALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALT----LCAVLLFYYGILS-SLAP----SYTWMLFLRGLVGFAIGCV- 281 (837)
Q Consensus 213 ~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~----~~~~l~~i~~i~~-a~a~----n~~~l~i~R~l~G~g~g~~- 281 (837)
.....-+|..|..+|++..|+.+.. +-||+.+. .+++++.+..++. .+.+ +...+++.-|+.|++.=+.
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556667888888999999999874 66776655 3344444444442 1222 3566788888888665444
Q ss_pred HHHHHHHHhc--cCcchhhHHHHHHHHHHHHHHHHH
Q psy1725 282 PQSVTLYAEF--LPSKQRAKCVVLLDCFWALGACFE 315 (837)
Q Consensus 282 ~~~~~~i~e~--~~~~~Rg~~~~~~~~~~~lG~~lg 315 (837)
++..-.-.|. +.|++-| -+++..+++|.++-
T Consensus 223 ~ViL~lPhEyK~~~pk~ig---~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 223 GVILNLPHEYKGYNPKKIG---IQFGLIWGFGYIFY 255 (267)
T ss_pred HHHhcChhhhcCCCcceeh---hHHHHHHHHHHHHH
Confidence 3322222332 2334444 34455566665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 837 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 9e-09 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 7/160 (4%)
Query: 193 TILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQ----ALTLCA 248
++ P L +R + + + S G VSDR + L L A
Sbjct: 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103
Query: 249 VLLFYYGILSSLAPSYTWMLFLRGLVGFAIG-CVPQSVTLYAEFLPSKQRAKCVVLLDCF 307
++ + G + S M L L G+ G P + K+R V + +C
Sbjct: 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163
Query: 308 WALGACFEVLLALIVMPTL-GWKWLLALSTAPLLAFACIC 346
+G LL L+ M W L + + A
Sbjct: 164 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 203
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 12/151 (7%)
Query: 214 ALTTTIVFLGMMLSSTFWGYVSDRYGRKQ-----ALTLCAVLLFYYGILSSLAPSYTWML 268
+ + + + G++SD+ R + V + + A + T +
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350
Query: 269 FLRGLVGFAIGCVPQSV--TLYAEFLPSKQRAKCVVLLDCFWALGACF--EVLLALIVMP 324
++GF I P + E P K F LG ++ V
Sbjct: 351 ICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409
Query: 325 TLGWKWL-LALSTAPLLAFACICPWLPESAR 354
GW + + +LA + + R
Sbjct: 410 F-GWDGGFMVMIGGSILAVILLIVVMIGEKR 439
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 215 LTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYG-ILSSLAPSYTWMLFLRGL 273
L +S F+G +SDR GR+ + L + +F +++ S T ++ +
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVTTSSLTVLIAASAM 97
Query: 274 VGFAIGC 280
G G
Sbjct: 98 QGMGTGV 104
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 67/468 (14%), Positives = 135/468 (28%), Gaps = 152/468 (32%)
Query: 92 PFQ--WPSRGENMMGQELEMNSVSIVPDGRCPQIEAKAISCPFQWPSSGENMMGQELEMN 149
F+ W + + +V + QI+ W S ++ +L ++
Sbjct: 181 DFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPN-------WTSRSDHSSNIKLRIH 228
Query: 150 SVS----------------IVPDDTFTV--SQAVNAFGFGKFQAKLSLYTGLCWMAD--- 188
S+ +V + V ++A NAF K+ L T + D
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLN---VQNAKAWNAFNLS---CKILLTTRFKQVTDFLS 282
Query: 189 -------SMEMTI--------LSILSPALHCDWQITRYQQALTT---TIVFLGMMLS--- 227
S++ S+L L C Q ++ LTT + + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGL 341
Query: 228 --STFWGYV-SDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQS 284
W +V D+ + L+ L P+ +F R ++ P S
Sbjct: 342 ATWDNWKHVNCDKL--TTIIESS---------LNVLEPAEYRKMFDR----LSV--FPPS 384
Query: 285 VTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLA------LSTAP 338
+ P+ LL W +V++ V+ L L+ + P
Sbjct: 385 AHI-----PTI-------LLSLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKESTISIP 429
Query: 339 LLAF-----------------------ACICPW--LPESAR--------YHVASGQPEKA 365
+ +P +H+ + + +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 366 LATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVET 425
+ R + D L + + DS G + + L QL+ Y Y+ +
Sbjct: 490 MTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQ-QLKF------YKPYICDNDP 539
Query: 426 RYHHVTRAYLTVTLFVARGIIAG----VFQAAYVYTPE-VYPTPLRAV 468
+Y + A L + +I + + A + E ++ + V
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.87 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.35 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.21 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.17 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.95 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.78 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.52 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.48 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=364.39 Aligned_cols=408 Identities=18% Similarity=0.260 Sum_probs=309.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHH
Q psy1725 172 KFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQI--------TRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQA 243 (837)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~--------s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~v 243 (837)
++.|.+.++++++.++.++|.++++.+++.+.++++. +....+++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4567777888899999999999999999999998853 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH------------------hcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHH
Q psy1725 244 LTLCAVLLFYYGILSS------------------LAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLL 304 (837)
Q Consensus 244 l~~~~~l~~i~~i~~a------------------~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~ 304 (837)
++++.+++.+++++++ +++|+++++++|+++|+|.|+. +.+..+++|++|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999999 5889999999999999999998 88888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhccCCcchhccCCChHHHHHHHHHHHhccCCcccccc
Q psy1725 305 DCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGR 384 (837)
Q Consensus 305 ~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~~pesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 384 (837)
+.+..+|.+++++++..+....+|.+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 193 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASW------------------------------------------------------ 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTT------------------------------------------------------
T ss_pred hhhhhhhhhhhhhcchhhcccccccc------------------------------------------------------
Confidence 99999999999888877644322110
Q ss_pred cccccccccccccchHHHhhhhhhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcc
Q psy1725 385 LVVDDSMVGEHRGRVKDLLSVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTP 464 (837)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~v~~~~~~~~~~~~~l~ 464 (837)
T Consensus 194 -------------------------------------------------------------------------------- 193 (491)
T 4gc0_A 194 -------------------------------------------------------------------------------- 193 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhhhHhHhhhhhHHHHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchH
Q psy1725 465 LRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLCFWALGACFEVLLALIVMPTLGWK 544 (837)
Q Consensus 465 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~i~l~~fg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~w~ 544 (837)
.....||
T Consensus 194 -------------------------------------------------------------------------~~~~~~~ 200 (491)
T 4gc0_A 194 -------------------------------------------------------------------------LNTDGWR 200 (491)
T ss_dssp -------------------------------------------------------------------------TTTTHHH
T ss_pred -------------------------------------------------------------------------ccchhhH
Confidence 0123577
Q ss_pred HHHHhhhhhhHHHHhhhccccCCcchhhhcCCHHHHHHHHHHHHHhcCCcccccccccccccccccchhhhhhhhhhhhh
Q psy1725 545 WLLALSTAPLLAFACICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLRT 624 (837)
Q Consensus 545 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (837)
..+....++.++.++..+++||||||+.+|++.+|+++.+++.+.++..+++..+..+... +++........ ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~ 276 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLD---HGRKTGGRLLM-FGVG 276 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTTHHHH-SCCT
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHH---hhhhhhhHHHH-hccc
Confidence 7777777888888888889999999999999999999999998876543322211111111 01111111111 1112
Q ss_pred hhHHHHHHhhhccCCCcchhhHHhhhcccceeEEEeehhhhhhHHhhccccccCCCccccccCCccCCCCccccccccch
Q psy1725 625 TSLLLWYIWYVSKSYPSRINKAVFLFHRTVCAFCYYGVVLMTTELFEASDTRCSESPIAAASGMFKPVDTCTADCRQLNT 704 (837)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (837)
+..+..... .++|++|.+.+ ..|.+.+++..+. ...
T Consensus 277 ~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~~~~~~~~--------------------------~~~ 312 (491)
T 4gc0_A 277 VIVIGVMLS-------------IFQQFVGINVV-----LYYAPEVFKTLGA--------------------------STD 312 (491)
T ss_dssp HHHHHHHHH-------------HHHHHTCHHHH-----HHHHHHHHHHSSC--------------------------CHH
T ss_pred HHHHHHHHH-------------HHHHHhhhhHH-----HhcchHHHHhcCC--------------------------Ccc
Confidence 222222222 25566665544 4445666555543 234
Q ss_pred hhhHHHHHHHhhchhhHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHhhhhhhhh
Q psy1725 705 QDYMDLLWTTLAEFPGIFATIFVIEKFGRKRTMAVQFVIFTACVSFLFICTQS----RAYLTVTLFVARGIIAGVFQAAY 780 (837)
Q Consensus 705 ~~~~~~~~~~~~~~~g~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 780 (837)
+.....+..++..+++.+++++++||+|||+.++.+...++++++.+...... ...+...+++..++..+..++.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566778889999999999999999999999999999888888776555421 22333444455556678889999
Q ss_pred hhccccCCCCccchhhHHHHHHHhhhcchhHHHHHHHhhc-------chhhHHHHHHHHhh
Q psy1725 781 VYTPEVYPTPLRAVGVGTCSAMARLGAMITPYIAQVLLKS-------SLSIAMTVYGVAAL 834 (837)
Q Consensus 781 ~~~~E~~p~~~r~~~~g~~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~ 834 (837)
++++|+||++.|+++.|++++++++++++++.++|.+.+. +...++++++++++
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987653 23456677776654
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=298.04 Aligned_cols=184 Identities=17% Similarity=0.181 Sum_probs=168.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH
Q psy1725 171 GKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL 250 (837)
Q Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l 250 (837)
++.+|..+..++++.+..+++...+++.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 345677788888899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy1725 251 LFYYGILSSL----APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPT 325 (837)
Q Consensus 251 ~~i~~i~~a~----a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~ 325 (837)
++++.+++++ ++|++.++++|++.|++.+.. +...+++.|++|+++|++++++...+..+|.++||++++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 88889999999999999999999999999999999999998888
Q ss_pred cC-hHHHHHHHHHHHHHHHH-HHhhccCCcch
Q psy1725 326 LG-WKWLLALSTAPLLAFAC-ICPWLPESARY 355 (837)
Q Consensus 326 ~g-Wr~~f~i~~i~~~~~~~-~~~~~pesp~~ 355 (837)
.+ ||+.|++.++..++..+ ..+++||+|+.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 88 99999999887665544 44568888753
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=287.66 Aligned_cols=175 Identities=14% Similarity=0.160 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHH
Q psy1725 174 QAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFY 253 (837)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i 253 (837)
++..+..+++..+..+++....++.+|.+.+++|++..+.+++.+++.++..++.+++|+++||+|||++++++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~ 103 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence 45566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cccC-
Q psy1725 254 YGILS---SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVM-PTLG- 327 (837)
Q Consensus 254 ~~i~~---a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~-~~~g- 327 (837)
+.+++ ++++|++.++++|++.|++.|.. +...++++|++|+++|++++++.+.+..+|.+++|++++.+. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999 89999999999999999999998 888899999999999999999999999999999999999987 5544
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHhh
Q psy1725 328 ------------------------WKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 328 ------------------------Wr~~f~i~~i~~~~~~~~~~~ 348 (837)
|||.|++.++..++..+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998777655554444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-26 Score=261.39 Aligned_cols=143 Identities=21% Similarity=0.208 Sum_probs=132.4
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh-hCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HH
Q psy1725 206 WQITRYQQALTTTIVFLGMMLSSTFWGYVSDR-YGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQ 283 (837)
Q Consensus 206 ~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~-~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~ 283 (837)
+|++..+.+++.+++.++..++++++|+++|| +|||++++++.++++++.+++++++|++.++++|++.|++.+.. +.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999988 88
Q ss_pred HHHHHHhccCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q psy1725 284 SVTLYAEFLPSKQ--RAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 284 ~~~~i~e~~~~~~--Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~ 348 (837)
..++++|++|+++ |+.+.++++.+..+|.+++|++++.+.+..+||+.|++.++..++..+..++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988 7888888999999999999999999999899999999987765555444443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=265.80 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHH
Q psy1725 179 LYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILS 258 (837)
Q Consensus 179 ~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~ 258 (837)
..+++..++..++...+.+.+|.+.+++|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 259 SLAPSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 259 a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
++++|++.++++|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..+||+.|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 88888899999999999999999999999999999999999988899999999887
Q ss_pred HHHHHHH-HHhhccCCcc
Q psy1725 338 PLLAFAC-ICPWLPESAR 354 (837)
Q Consensus 338 ~~~~~~~-~~~~~pesp~ 354 (837)
..++..+ ..+++||+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHCcccCC
Confidence 7666655 4445777653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-22 Score=228.56 Aligned_cols=151 Identities=11% Similarity=0.151 Sum_probs=136.6
Q ss_pred HHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-CChHHHHHHHHHHHHHHHHHHhcc-cHHHHHH
Q psy1725 198 LSPALHCDWQ------ITRYQQALTTTIVFLGMMLSSTFWGYVSDRY-GRKQALTLCAVLLFYYGILSSLAP-SYTWMLF 269 (837)
Q Consensus 198 ~l~~i~~~~~------~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~-GRr~vl~~~~~l~~i~~i~~a~a~-n~~~l~i 269 (837)
..+.+.+++| ++..+.+++.+++.++..++++++|+++||+ |||++++++.++++++.+++++++ |++.+++
T Consensus 35 l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 35 LTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445678899 9999999999999999999999999999999 999999999999999999999999 9999999
Q ss_pred HHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHH---HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q psy1725 270 LRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVL---LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACI 345 (837)
Q Consensus 270 ~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~ 345 (837)
+|++.|++.+.. +...+++.|++|+++|+++.+. ...+..+|.++||++++.+.+..+||+.|++.++..++..+.
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999988 8888899999999999877666 889999999999999999998889999999988776665555
Q ss_pred Hhh
Q psy1725 346 CPW 348 (837)
Q Consensus 346 ~~~ 348 (837)
.++
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 444
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=228.75 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=112.1
Q ss_pred HHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHH---HHHhcccHH-
Q psy1725 191 EMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGI---LSSLAPSYT- 265 (837)
Q Consensus 191 ~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i---~~a~a~n~~- 265 (837)
......+.+|. +++++|++..+.+++.+.+.++..++++++|+++||+|||++++++.+++.++.. .+++++...
T Consensus 22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 5667999999999999999999999999999999999999999999888765322 223332221
Q ss_pred HHHHHHHHHHhhhchH-HHHHHHHHhccCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Q psy1725 266 WMLFLRGLVGFAIGCV-PQSVTLYAEFLPS--KQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAF 342 (837)
Q Consensus 266 ~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~ 342 (837)
.++.+|++.|++.+.. +...+.+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALIL 180 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHH
Confidence 2345666666655543 3333333344332 456777788878888999999999998876 58999999887765555
Q ss_pred HHHHhhccC
Q psy1725 343 ACICPWLPE 351 (837)
Q Consensus 343 ~~~~~~~pe 351 (837)
.+..++.+|
T Consensus 181 ~~~~~~~~~ 189 (417)
T 2cfq_A 181 AVLLFFAKT 189 (417)
T ss_dssp HHHSCSSCC
T ss_pred HHHHHHcCc
Confidence 444444443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-11 Score=137.97 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--CChHHHHHHHHHHH-HHHHHHHh
Q psy1725 185 WMADSMEMTILSILSPALHCD-WQITRYQQALTTTIVFLGMMLSSTFWGYVSDRY--GRKQALTLCAVLLF-YYGILSSL 260 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~-~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~--GRr~vl~~~~~l~~-i~~i~~a~ 260 (837)
.++.......+....|.+.++ +|.+..+.++..+.+.++..++.++.|+++||+ |||+.+.++.++.. ++.++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 334444444555666766666 899999999999999999999999999999999 99999988888777 66666666
Q ss_pred c--ccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccChHHHHHHHH
Q psy1725 261 A--PSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWAL-GACFEVLLALIVMPTLGWKWLLALST 336 (837)
Q Consensus 261 a--~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~l-G~~lgp~l~~~l~~~~gWr~~f~i~~ 336 (837)
. .+.+.+++.-++.|++.+.. +....++.|.+|+++||.+.++.+....+ |..++|.+.+.+.+..||++.|++.+
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6 37888888899999988887 77778889999999999999999999999 99999999999999999999999988
Q ss_pred HHHHHHHHHHhhc
Q psy1725 337 APLLAFACICPWL 349 (837)
Q Consensus 337 i~~~~~~~~~~~~ 349 (837)
+..++..++.+++
T Consensus 421 ~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 421 GGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766665555543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=128.40 Aligned_cols=145 Identities=20% Similarity=0.129 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHHHHH
Q psy1725 210 RYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSVTLY 288 (837)
Q Consensus 210 ~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~~~i 288 (837)
....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+.. +....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888899999999999999999999999999998888888888889988988888889887766 6667788
Q ss_pred HhccCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh-hccCCcc
Q psy1725 289 AEFLPSKQRAKCVVL-LDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP-WLPESAR 354 (837)
Q Consensus 289 ~e~~~~~~Rg~~~~~-~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~-~~pesp~ 354 (837)
.|.+|++.||.+.++ ++.+..+|.+++|.++|.+.+..|++..|++.++..++..++.+ +.||+++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999998 47888899999999999998888899999888876666555544 4666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.8e-10 Score=124.81 Aligned_cols=153 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred HHHHHHHHHH-H-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q psy1725 193 TILSILSPAL-H-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFL 270 (837)
Q Consensus 193 ~~~~~~l~~i-~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~ 270 (837)
.......|.+ . +.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++...++..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL 354 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3344444544 4 4459999999999999999999999999999999999999999999999999999999988776655
Q ss_pred HHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHHHhh
Q psy1725 271 RGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLG-WKWLLALSTAPLLAFACICPW 348 (837)
Q Consensus 271 R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~g-Wr~~f~i~~i~~~~~~~~~~~ 348 (837)
++.|++.+.. +...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| +++.|++.++..++.++..++
T Consensus 355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 8889988887 77888889999866 888888777 556999999999999999888 999998876554444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=114.79 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc---
Q psy1725 185 WMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA--- 261 (837)
Q Consensus 185 ~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a--- 261 (837)
.+........+....+.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~ 365 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc
Confidence 33334444555666778888888888888888888889999999999999999999999999988888776665433
Q ss_pred --ccHHHHHH-HHHHHHhhhchHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc------ccChHHHH
Q psy1725 262 --PSYTWMLF-LRGLVGFAIGCVPQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP------TLGWKWLL 332 (837)
Q Consensus 262 --~n~~~l~i-~R~l~G~g~g~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~------~~gWr~~f 332 (837)
++...++. .-+..+++.+..+....+.+|++|.+.|+.++++......+|.++++.+...+.+ ..++.+.|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 12222222 2222334444446777888999999999999999999888888888877655532 34567788
Q ss_pred HHHHHHHHHHH-HHHhhccCCc
Q psy1725 333 ALSTAPLLAFA-CICPWLPESA 353 (837)
Q Consensus 333 ~i~~i~~~~~~-~~~~~~pesp 353 (837)
++.++.+++.. +.++++|||.
T Consensus 446 ~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHheecCCC
Confidence 87776655554 4556799994
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=117.28 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHH-----HHHHHHHHHHHHHHhcc-------
Q psy1725 196 SILSPALH-CDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALT-----LCAVLLFYYGILSSLAP------- 262 (837)
Q Consensus 196 ~~~l~~i~-~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~-----~~~~l~~i~~i~~a~a~------- 262 (837)
...++.+. +.++.+....++..+...++..++.++.|+++||+|||+... .+.++.+++.++.++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33344443 446666567788888899999999999999999999986655 67777777766666543
Q ss_pred --cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q psy1725 263 --SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPL 339 (837)
Q Consensus 263 --n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~ 339 (837)
+.+.+++.-++.|++.+.. +....++.|.+|++.||.+.++......+|..+++.+++.+.+. ++.+.|++.++..
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Confidence 7777888889999998887 78888889999999999999999999999999999998887654 6778888877665
Q ss_pred HHHHHHHhh-ccC
Q psy1725 340 LAFACICPW-LPE 351 (837)
Q Consensus 340 ~~~~~~~~~-~pe 351 (837)
++..++.++ .++
T Consensus 462 ~~~~~~~~~~~~~ 474 (491)
T 4aps_A 462 VVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHH
Confidence 555554444 444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-08 Score=108.77 Aligned_cols=149 Identities=12% Similarity=0.077 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHH-HHHHHH--HHHh-
Q psy1725 186 MADSMEMTILSILSPAL-HCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVL-LFYYGI--LSSL- 260 (837)
Q Consensus 186 ~~~~~~~~~~~~~l~~i-~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l-~~i~~i--~~a~- 260 (837)
++............|.+ ++++|.+..+.++..+.+.++..++.++.+++.||+||+. ..+..+ ..++.. ....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Confidence 33333444444555544 4448888999999999999999999999999999998832 233322 222221 2222
Q ss_pred -cccHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q psy1725 261 -APSYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTA 337 (837)
Q Consensus 261 -a~n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i 337 (837)
.++.+.+++.-++.|++.+.. +....++.|.+| ++||++.++.+....+|..++|.+.+.+.+..+|+..+++.++
T Consensus 287 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 287 GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 246777888889999998887 888888899998 8999999999999999999999999998877778887776443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=106.28 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=99.6
Q ss_pred chhhhHHHHHHHhhchhhHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q psy1725 703 NTQDYMDLLWTTLAEFPGIFATIFVIEKF-GRKRTMAVQFVIFTACVSFLFICTQSRAYLTVTLFVARGIIAGVFQAAYV 781 (837)
Q Consensus 703 ~~~~~~~~~~~~~~~~~g~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (837)
..+.........++..++.+++|+++||+ |||+++.++.++.+++.+++.+...+...+.+..++.+++.....+....
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence 33444555667788889999999999999 99999999988888887776654313344444455555666677899999
Q ss_pred hccccCCCCccchhhHH---HHHHHhhhcchhHHHHHHHhhc-chhhHHHHHHHH
Q psy1725 782 YTPEVYPTPLRAVGVGT---CSAMARLGAMITPYIAQVLLKS-SLSIAMTVYGVA 832 (837)
Q Consensus 782 ~~~E~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~ 832 (837)
+..|.+|++.|+++.+. .+....+|.+++|.+.+.+.+. +....+++.++.
T Consensus 133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~ 187 (524)
T 2xut_A 133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVL 187 (524)
T ss_dssp HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999877666 8889999999999999988875 555556555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 837 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-12 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 7e-09 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (167), Expect = 1e-12
Identities = 54/421 (12%), Positives = 121/421 (28%), Gaps = 20/421 (4%)
Query: 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSST 229
+ + + ++ L + A + ++ P L + +R + + + S
Sbjct: 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77
Query: 230 FWGYVSDRYGRKQ----ALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFA-IGCVPQS 284
G VSDR + L L A ++ + G + S M L L G+ P
Sbjct: 78 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137
Query: 285 VTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLL-ALIVMPTLGWKWLLALSTAPLLAFA 343
+ K+R V + +C +G LL L + W L + + A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 344 CICPWLPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLL 403
+ E+ + + + L + + ++ +
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 257
Query: 404 SVQLRTTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPT 463
+V + + E ++ + ++ L+ GI +
Sbjct: 258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 317
Query: 464 PLRAVGVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPSYTWMLFLRG---- 519
V T +A + + P + + +++ + I + L L
Sbjct: 318 GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 377
Query: 520 --------LCFWALGACFEVLLALIVMPTLGWKW-LLALSTAPLLAFACICPWLPESARY 570
L + G+ + + GW + + +LA + + R
Sbjct: 378 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR 437
Query: 571 H 571
H
Sbjct: 438 H 438
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (134), Expect = 7e-09
Identities = 35/403 (8%), Positives = 93/403 (23%), Gaps = 18/403 (4%)
Query: 176 KLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVS 235
L+ + LH I++ + + L +L +G +S
Sbjct: 11 MFGLFFFFYFFIMGA---YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLS 67
Query: 236 DRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCVPQSVTLYA------ 289
D+ G ++ L + + + + + G
Sbjct: 68 DKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA 127
Query: 290 -EFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW 348
S++ F +G + I+ S L+ +
Sbjct: 128 FIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFA 187
Query: 349 LPESARYHVASGQPEKALATLREIAADNGKPMLLGRLVVDDSMVGEHRGRVKDLLSVQLR 408
++ + + A + + V +
Sbjct: 188 KTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT------YDVFDQ 241
Query: 409 TTSLLLWYIWYVSKVETRYHHVTRAYLTVTLFVARGIIAGVFQAAYVYTPEVYPTPLRAV 468
+ + + TR + + + + +V
Sbjct: 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSV 301
Query: 469 GVGTCSAMARLGAMITPYIAQALTLCAVLLFYYGILSSLAPS--YTWMLFLRGLCFWALG 526
+ S ++ + +L+ + ++S + + F L
Sbjct: 302 RIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361
Query: 527 ACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPWLPESAR 569
F +LA + ++G++ + L F I +
Sbjct: 362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 837 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.37 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.18 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1e-30 Score=293.16 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=163.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHH
Q psy1725 170 FGKFQAKLSLYTGLCWMADSMEMTILSILSPALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAV 249 (837)
Q Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~ 249 (837)
+++++|.++..++++++..+++...++...|.++ |+|+|.++.+++.+++.++++++++++|+++||+|||+++.++.+
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 4567899988899999999999999999888875 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc----cHHHHHHHHHHHHhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1725 250 LLFYYGILSSLAP----SYTWMLFLRGLVGFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWALGACFEVLLALIVMP 324 (837)
Q Consensus 250 l~~i~~i~~a~a~----n~~~l~i~R~l~G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~ 324 (837)
+.+++.+++++++ +++.++++|++.|++.|.. +....+++|++|+++|++++++++.+..+|.+++|++++.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 9999999998874 7788999999999999887 8888899999999999999999999999999999999887665
Q ss_pred -ccChHHHHHHHHHHHHHHHHHH-hhccCCcc
Q psy1725 325 -TLGWKWLLALSTAPLLAFACIC-PWLPESAR 354 (837)
Q Consensus 325 -~~gWr~~f~i~~i~~~~~~~~~-~~~pesp~ 354 (837)
..+||+.|++.++..++..++. ++++|+|+
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 4589999999887666655544 44666654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.3e-22 Score=217.04 Aligned_cols=171 Identities=13% Similarity=0.083 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhc
Q psy1725 183 LCWMADSMEMTILSILSPA-LHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLA 261 (837)
Q Consensus 183 l~~~~~~~~~~~~~~~l~~-i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a 261 (837)
+..+...+......+.+|. +.+++|+|..+.+++.+++.++..++++++|+++||+|||++++++.++..++.++.+++
T Consensus 14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~ 93 (417)
T d1pv7a_ 14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF 93 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666777775 678899999999999999999999999999999999999999999999999999999988
Q ss_pred ccHHHHH----HHHHHHHhhhchH-HHHHHHHHhccC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Q psy1725 262 PSYTWML----FLRGLVGFAIGCV-PQSVTLYAEFLP--SKQRAKCVVLLDCFWALGACFEVLLALIVMPTLGWKWLLAL 334 (837)
Q Consensus 262 ~n~~~l~----i~R~l~G~g~g~~-~~~~~~i~e~~~--~~~Rg~~~~~~~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i 334 (837)
.+..... +.+.+.|.+.+.. ........+..+ .+++....+........|..+++.+++.+.+. +|++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 172 (417)
T d1pv7a_ 94 IFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWL 172 (417)
T ss_dssp THHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccc
Confidence 8776654 4444444444443 333333322222 23455667778888889999999999988765 55555555
Q ss_pred HH-HHHHHHHHHHhhccCCcc
Q psy1725 335 ST-APLLAFACICPWLPESAR 354 (837)
Q Consensus 335 ~~-i~~~~~~~~~~~~pesp~ 354 (837)
.. ...+...+..++.+|++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 173 GSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHHHHHHHHHHSSCCCSCS
T ss_pred hhhHHHHHHHHHHHHhccccc
Confidence 54 455555555556777654
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.9e-12 Score=139.84 Aligned_cols=145 Identities=20% Similarity=0.134 Sum_probs=127.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhchH-HHHH
Q psy1725 207 QITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSSLAPSYTWMLFLRGLVGFAIGCV-PQSV 285 (837)
Q Consensus 207 ~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a~a~n~~~l~i~R~l~G~g~g~~-~~~~ 285 (837)
+.+....+...+...++..++..+.+++.||+|||+++.++.++.+++.++.++.+|.+.+++.-++.|++.+.. +...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 335566778888889999999999999999999999999999999999999999999999999999999999988 8888
Q ss_pred HHHHhccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh-ccC
Q psy1725 286 TLYAEFLPSKQRAKCVVLL-DCFWALGACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICPW-LPE 351 (837)
Q Consensus 286 ~~i~e~~~~~~Rg~~~~~~-~~~~~lG~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~~-~pe 351 (837)
.++.|.+|++.|+...++. +....+|..++|.++|.+.+..||++.|++.++..++..++.++ +++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8889999999999999975 56778999999999999999999999999988766666555544 443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.7e-10 Score=124.10 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=115.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhCChHHHHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHH
Q psy1725 200 PALHCDWQITRYQQALTTTIVFLGMMLSSTFWGYVSDRYGRKQALTLCAVLLFYYGILSS-----LAPSYTWMLFLRGLV 274 (837)
Q Consensus 200 ~~i~~~~~~s~~~~~~i~s~~~lg~~vg~li~g~lsd~~GRr~vl~~~~~l~~i~~i~~a-----~a~n~~~l~i~R~l~ 274 (837)
..+.+.++.+..+.++..+.+.++..++.++.|+++||++||+......+...+..+... ...+.+..+++-++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (447)
T d1pw4a_ 274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 353 (447)
T ss_dssp HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999987654444333332222222 235778888888889
Q ss_pred HhhhchH-HHHHHHHHhccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q psy1725 275 GFAIGCV-PQSVTLYAEFLPSKQRAKCVVLLDCFWAL-GACFEVLLALIVMPTLGWKWLLALSTAPLLAFACICP 347 (837)
Q Consensus 275 G~g~g~~-~~~~~~i~e~~~~~~Rg~~~~~~~~~~~l-G~~lgp~l~~~l~~~~gWr~~f~i~~i~~~~~~~~~~ 347 (837)
|++.++. +....+..|.+|++.||.+.++.+....+ |.+++|++.+.+.+..||+..|++.+...++..++..
T Consensus 354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 9988887 77777889999999999999998876665 6788999999999999999999887765555444443
|