Psyllid ID: psy17260
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | 2.2.26 [Sep-21-2011] | |||||||
| Q15436 | 765 | Protein transport protein | yes | N/A | 0.693 | 0.615 | 0.517 | 1e-157 | |
| A2VDL8 | 768 | Protein transport protein | yes | N/A | 0.693 | 0.613 | 0.517 | 1e-156 | |
| Q5R9P3 | 765 | Protein transport protein | yes | N/A | 0.693 | 0.615 | 0.516 | 1e-156 | |
| Q01405 | 765 | Protein transport protein | yes | N/A | 0.693 | 0.615 | 0.514 | 1e-156 | |
| Q15437 | 767 | Protein transport protein | no | N/A | 0.693 | 0.614 | 0.516 | 1e-155 | |
| Q5R5G2 | 766 | Protein transport protein | no | N/A | 0.693 | 0.614 | 0.516 | 1e-155 | |
| Q3SZN2 | 767 | Protein transport protein | no | N/A | 0.693 | 0.614 | 0.519 | 1e-155 | |
| Q7SZE5 | 765 | Protein transport protein | yes | N/A | 0.692 | 0.614 | 0.515 | 1e-154 | |
| Q05AS9 | 765 | Protein transport protein | yes | N/A | 0.726 | 0.644 | 0.494 | 1e-153 | |
| Q9D662 | 767 | Protein transport protein | no | N/A | 0.693 | 0.614 | 0.5 | 1e-147 |
| >sp|Q15436|SC23A_HUMAN Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2 | Back alignment and function desciption |
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Score = 554 bits (1428), Expect = e-157, Method: Compositional matrix adjust.
Identities = 288/556 (51%), Positives = 364/556 (65%), Gaps = 85/556 (15%)
Query: 177 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 236
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVL 60
Query: 237 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYT 296
C R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 61 CSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYV 120
Query: 297 IPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGC 356
+ + PL+FL+VVDTCM++E+L AL++S+QMSLSLLP ALVGLITFG+MVQVHELGC
Sbjct: 121 VLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGC 180
Query: 357 EGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEM 416
EGIS+SYVFRGTKD+ A++LQEML + K ++ P+ QPP R FLQPV+ +M
Sbjct: 181 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNR--FLQPVQKIDM 238
Query: 417 YATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL------------------- 457
TDLL LQ+ P V QG+ +GVA IAVGLLE T
Sbjct: 239 NLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGP 298
Query: 458 -----------IRSHNDIHKGNNKLPGRMATKITKGLALRAA--------YCRAIE---- 494
IRS +DI K N K + TK + LA RAA Y A++
Sbjct: 299 GMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYACALDQTGL 357
Query: 495 ------------YLLVPPWINGLLLEY----------------------------ELCLM 514
Y+++ N L + E+ +
Sbjct: 358 LEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKIS 417
Query: 515 GAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGPG 574
GAIGPCVSLN K CVS+ ++G GGT WK+C LSP TTLA++FE+VNQH APIPQGG G
Sbjct: 418 GAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRG 477
Query: 575 CIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQD 634
IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M R+ + RAE +
Sbjct: 478 AIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETE 537
Query: 635 DGPDVMRWADRTLIRL 650
+GPDV+RW DR LIRL
Sbjct: 538 EGPDVLRWLDRQLIRL 553
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Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. Homo sapiens (taxid: 9606) |
| >sp|A2VDL8|SC23A_BOVIN Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R9P3|SC23A_PONAB Protein transport protein Sec23A OS=Pongo abelii GN=SEC23A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q01405|SC23A_MOUSE Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15437|SC23B_HUMAN Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R5G2|SC23B_PONAB Protein transport protein Sec23B OS=Pongo abelii GN=SEC23B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3SZN2|SC23B_BOVIN Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7SZE5|SC23A_DANRE Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9D662|SC23B_MOUSE Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | ||||||
| 242021485 | 768 | protein transport protein Sec23A, putati | 0.729 | 0.644 | 0.528 | 1e-166 | |
| 328788157 | 775 | PREDICTED: protein transport protein Sec | 0.721 | 0.632 | 0.527 | 1e-166 | |
| 195446407 | 781 | GK12234 [Drosophila willistoni] gi|19416 | 0.729 | 0.633 | 0.524 | 1e-166 | |
| 7271162 | 769 | putative Sec23 protein [Drosophila melan | 0.726 | 0.641 | 0.532 | 1e-166 | |
| 193673864 | 771 | PREDICTED: protein transport protein Sec | 0.724 | 0.638 | 0.533 | 1e-165 | |
| 332030321 | 774 | Protein transport protein Sec23A [Acromy | 0.693 | 0.608 | 0.533 | 1e-165 | |
| 312374945 | 768 | hypothetical protein AND_15311 [Anophele | 0.723 | 0.639 | 0.528 | 1e-164 | |
| 390177816 | 785 | GA26597, isoform B [Drosophila pseudoobs | 0.723 | 0.625 | 0.526 | 1e-164 | |
| 386765175 | 781 | sec23, isoform E [Drosophila melanogaste | 0.726 | 0.631 | 0.530 | 1e-164 | |
| 24644349 | 773 | sec23, isoform A [Drosophila melanogaste | 0.726 | 0.637 | 0.530 | 1e-164 |
| >gi|242021485|ref|XP_002431175.1| protein transport protein Sec23A, putative [Pediculus humanus corporis] gi|212516424|gb|EEB18437.1| protein transport protein Sec23A, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/590 (52%), Positives = 386/590 (65%), Gaps = 95/590 (16%)
Query: 177 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 236
M TYEEF QNE+RDGIR TWNVWPSS++EA++LV+P+GCLYQPLKE+PDLPP+QY+P+L
Sbjct: 1 MATYEEFIQQNEDRDGIRFTWNVWPSSRVEATKLVVPLGCLYQPLKERPDLPPIQYDPVL 60
Query: 237 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYT 296
C RN CRAILNPLCQVD+ +KLWVCNFCFQRN FPPQYAAI+EQ+QPAEL P +TIEYT
Sbjct: 61 CTRNTCRAILNPLCQVDFHAKLWVCNFCFQRNPFPPQYAAISEQNQPAELIPMCSTIEYT 120
Query: 297 IPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGC 356
+ + QC P +FL VVDTC+D+EELGAL+DSLQMSLSLLP NAL+GLITFG+MVQVHELGC
Sbjct: 121 LLRAQCLPPIFLLVVDTCVDDEELGALKDSLQMSLSLLPSNALIGLITFGRMVQVHELGC 180
Query: 357 EGISRSYVFRGTKDVPAQRLQEMLRIGKYS-MSAPAPAPRPGQPPRPARTQFLQPVEACE 415
EGIS+SYVF GTKD+ A+++QEML IG+YS + P R P P +FLQPV C+
Sbjct: 181 EGISKSYVFCGTKDLNAKQIQEMLGIGQYSAVQQQGPQARNHGQPLPPANKFLQPVHKCD 240
Query: 416 MYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL------------------ 457
M TDLL LQ+ P V G+ TGVA +AVGLLE T
Sbjct: 241 MSLTDLLGELQRDPWPVTTGKRSLRSTGVALSVAVGLLECTYPNTGARIMLFVGGPCSQG 300
Query: 458 ------------IRSHNDIHKGNNKLPGRMATKITKGLALRAA--------YCRAIE--- 494
IRSH+DI K N K + ATK + LA+RAA Y A++
Sbjct: 301 PGQVLDDELKHPIRSHHDIQKDNAKYLKK-ATKHYESLAMRAATNGHAIDIYSCALDQTG 359
Query: 495 -------------YLLVPPWINGLLL--------------EYELCLMGAI---------- 517
++++ N L + ++ G I
Sbjct: 360 LLEMKQCCTSTGGHMVMGDSFNSSLFKQTYQRVFTRDQKGDLKMAFNGTIEVKCSRELKV 419
Query: 518 ----GPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGP 573
G C+SLN+K CVSD + G+GGT WK+CT +PN+T + FFE+VNQH APIPQGG
Sbjct: 420 SGAIGCCLSLNMKGPCVSDTETGLGGTCQWKLCTFTPNSTCSFFFEVVNQHAAPIPQGGR 479
Query: 574 GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQ 633
GCIQFIT YQ +G++++RVTT+ARNWADA L HIS+GFDQEAAAV+M RMVV RAE
Sbjct: 480 GCIQFITQYQHANGQRRIRVTTVARNWADAGVNLHHISAGFDQEAAAVLMARMVVYRAET 539
Query: 634 DDGPDVMRWADRTLIRL----------EGGAPVLTEDVSLQ-VFMEHLKK 672
+DGPDV+RW DR LIRL + + L+E+ SL FM HL++
Sbjct: 540 EDGPDVLRWVDRMLIRLCQKFGEYSKDDPNSFRLSENFSLYPQFMYHLRR 589
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Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328788157|ref|XP_392515.2| PREDICTED: protein transport protein Sec23A-like isoform 1 [Apis mellifera] gi|380012521|ref|XP_003690328.1| PREDICTED: protein transport protein Sec23A [Apis florea] | Back alignment and taxonomy information |
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| >gi|195446407|ref|XP_002070766.1| GK12234 [Drosophila willistoni] gi|194166851|gb|EDW81752.1| GK12234 [Drosophila willistoni] | Back alignment and taxonomy information |
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| >gi|7271162|emb|CAB81549.1| putative Sec23 protein [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|193673864|ref|XP_001943407.1| PREDICTED: protein transport protein Sec23A-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|332030321|gb|EGI70064.1| Protein transport protein Sec23A [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|312374945|gb|EFR22404.1| hypothetical protein AND_15311 [Anopheles darlingi] | Back alignment and taxonomy information |
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| >gi|390177816|ref|XP_003736491.1| GA26597, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859207|gb|EIM52564.1| GA26597, isoform B [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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| >gi|386765175|ref|NP_001246932.1| sec23, isoform E [Drosophila melanogaster] gi|383292512|gb|AFH06251.1| sec23, isoform E [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|24644349|ref|NP_730978.1| sec23, isoform A [Drosophila melanogaster] gi|24644351|ref|NP_730979.1| sec23, isoform B [Drosophila melanogaster] gi|442617626|ref|NP_001262294.1| sec23, isoform G [Drosophila melanogaster] gi|23170394|gb|AAF51978.2| sec23, isoform A [Drosophila melanogaster] gi|23170395|gb|AAF51979.2| sec23, isoform B [Drosophila melanogaster] gi|440217105|gb|AGB95677.1| sec23, isoform G [Drosophila melanogaster] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | ||||||
| FB|FBgn0262125 | 773 | Sec23 "Sec23 ortholog (S. cere | 0.412 | 0.362 | 0.646 | 4.9e-169 | |
| ZFIN|ZDB-GENE-030131-5479 | 767 | sec23b "Sec23 homolog B (S. ce | 0.410 | 0.363 | 0.610 | 7.8e-161 | |
| RGD|1310699 | 767 | Sec23b "Sec23 homolog B (S. ce | 0.412 | 0.365 | 0.628 | 8.8e-160 | |
| MGI|MGI:1350925 | 767 | Sec23b "SEC23B (S. cerevisiae) | 0.412 | 0.365 | 0.625 | 1.8e-159 | |
| UNIPROTKB|Q5ZK03 | 767 | SEC23A "Protein transport prot | 0.412 | 0.365 | 0.607 | 4.8e-159 | |
| UNIPROTKB|Q15436 | 765 | SEC23A "Protein transport prot | 0.409 | 0.363 | 0.617 | 4.8e-159 | |
| UNIPROTKB|E2QTA6 | 769 | SEC23A "Uncharacterized protei | 0.409 | 0.361 | 0.617 | 6.1e-159 | |
| UNIPROTKB|J9P1Q5 | 765 | SEC23A "Uncharacterized protei | 0.409 | 0.363 | 0.617 | 6.1e-159 | |
| UNIPROTKB|F1SHL3 | 765 | SEC23A "Uncharacterized protei | 0.409 | 0.363 | 0.617 | 6.1e-159 | |
| MGI|MGI:1349635 | 765 | Sec23a "SEC23A (S. cerevisiae) | 0.409 | 0.363 | 0.614 | 2e-158 |
| FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 4.9e-169, Sum P(4) = 4.9e-169
Identities = 185/286 (64%), Positives = 219/286 (76%)
Query: 177 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLL 236
MTTYEEF QNE+RDG+R TWNVWPSS++EASRLV+P+ CLYQPLKE+PDLPP+QYEP+L
Sbjct: 1 MTTYEEFIQQNEDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVL 60
Query: 237 CMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYT 296
C R+ CRAILNPLCQVDY++KLWVCNFCFQRN FPPQYAAI+EQHQPAEL P F+TIEYT
Sbjct: 61 CTRSNCRAILNPLCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYT 120
Query: 297 IPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGC 356
I + P VF+F+VDTCMDEEEL AL+DSLQMSLSLLP NALVGLITFG+M+QVHELG
Sbjct: 121 ITRTPTMPPVFIFLVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGA 180
Query: 357 EGISRSYVFRGTKDVPAQRLQEMLRIGK------YSMSXXXXXXXXXXXXXXXXTQFLQP 410
EG S+SYVFRGTKD+ A+++Q+ML IG+ +FLQP
Sbjct: 181 EGCSKSYVFRGTKDLTAKQVQDMLGIGRGAAPGPQQQQHLPGQPAGAAAPVPPAHRFLQP 240
Query: 411 VEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGT 456
+ C+ DLL+ LQ+ P V QG+ + TG A IAVGLLE T
Sbjct: 241 IGQCDAALGDLLSELQRDPWPVPQGKRYLRSTGAALSIAVGLLECT 286
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| ZFIN|ZDB-GENE-030131-5479 sec23b "Sec23 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|1310699 Sec23b "Sec23 homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1350925 Sec23b "SEC23B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5ZK03 SEC23A "Protein transport protein Sec23A" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QTA6 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P1Q5 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SHL3 SEC23A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7SZE5 | SC23A_DANRE | No assigned EC number | 0.5152 | 0.6921 | 0.6143 | yes | N/A |
| Q5R9P3 | SC23A_PONAB | No assigned EC number | 0.5161 | 0.6936 | 0.6156 | yes | N/A |
| Q15436 | SC23A_HUMAN | No assigned EC number | 0.5179 | 0.6936 | 0.6156 | yes | N/A |
| Q6FSI6 | SC232_CANGA | No assigned EC number | 0.3731 | 0.6789 | 0.6089 | yes | N/A |
| Q05AS9 | SC23A_XENTR | No assigned EC number | 0.4940 | 0.7260 | 0.6444 | yes | N/A |
| Q54T59 | SEC23_DICDI | No assigned EC number | 0.3646 | 0.6642 | 0.6013 | yes | N/A |
| A3GFA2 | SEC23_PICST | No assigned EC number | 0.3695 | 0.6642 | 0.6021 | yes | N/A |
| Q6CPH3 | SEC23_KLULA | No assigned EC number | 0.3544 | 0.6818 | 0.6092 | yes | N/A |
| Q6BQT6 | SEC23_DEBHA | No assigned EC number | 0.3684 | 0.6612 | 0.6018 | yes | N/A |
| Q01405 | SC23A_MOUSE | No assigned EC number | 0.5143 | 0.6936 | 0.6156 | yes | N/A |
| P15303 | SEC23_YEAST | No assigned EC number | 0.3529 | 0.6818 | 0.6028 | yes | N/A |
| O74873 | SC231_SCHPO | No assigned EC number | 0.3985 | 0.6774 | 0.6060 | yes | N/A |
| Q758M7 | SEC23_ASHGO | No assigned EC number | 0.3677 | 0.6774 | 0.6084 | yes | N/A |
| A2VDL8 | SC23A_BOVIN | No assigned EC number | 0.5179 | 0.6936 | 0.6132 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 679 | |||
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 1e-107 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 4e-85 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 4e-63 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 4e-51 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 8e-37 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 5e-36 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 8e-28 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 9e-26 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 1e-24 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-20 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 4e-16 | |
| pfam04810 | 39 | pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | 6e-15 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 5e-10 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 1e-08 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 2e-06 | |
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 1e-05 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 4e-05 |
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-107
Identities = 146/334 (43%), Positives = 188/334 (56%), Gaps = 38/334 (11%)
Query: 188 EERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILN 247
E DG+R +WNVWPSSK+EAS+ V+P+ LY PLK P+LP L Y+PL C CRA+LN
Sbjct: 7 EAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRT--CRAVLN 64
Query: 248 PLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPKM---QCAP 304
P C+VD+++K+W+C FCFQRN FPP Y++I+E + PAEL PQ+TT+EYT+P +P
Sbjct: 65 PYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSP 124
Query: 305 LVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISRSYV 364
VF+FVVDTCM EEELGAL+ +L +++LLP+NALVGLITFG V VHELG S+SYV
Sbjct: 125 PVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGLITFGTHVHVHELGFSECSKSYV 184
Query: 365 FRGTKDVPAQRLQEML--RIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACEMYATDLL 422
FRG K+V ++ E L K + A +FL P CE L
Sbjct: 185 FRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSAL 244
Query: 423 AALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL------------------------- 457
LQK P V G TG A +A GLL +
Sbjct: 245 EELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSK 304
Query: 458 -----IRSHNDIHKGNNKLPGRMATKITKGLALR 486
IRSH D+ K + A K +GLA +
Sbjct: 305 DLSEPIRSHKDLDKDAAPY-YKKAVKFYEGLAKQ 337
|
Length = 761 |
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| KOG1986|consensus | 745 | 100.0 | ||
| KOG1984|consensus | 1007 | 100.0 | ||
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| KOG1985|consensus | 887 | 100.0 | ||
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 99.95 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 99.94 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 99.93 | |
| KOG1986|consensus | 745 | 99.92 | ||
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 99.87 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.76 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 99.75 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 99.71 | |
| PF04810 | 40 | zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: | 99.53 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.14 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 97.61 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 97.01 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 96.65 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 95.7 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 95.39 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 94.73 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 94.36 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 94.28 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 93.78 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 93.29 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 92.73 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 92.68 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 92.51 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 92.42 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 92.4 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 92.32 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 92.18 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 92.11 | |
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 92.1 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 91.96 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 91.91 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 91.51 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 91.23 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 90.91 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 90.28 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 90.26 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 88.74 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 88.36 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 86.36 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 85.79 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 85.39 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 85.09 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 84.4 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 82.55 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 82.16 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 81.79 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 81.07 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 80.5 |
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-99 Score=882.12 Aligned_cols=489 Identities=44% Similarity=0.777 Sum_probs=440.0
Q ss_pred ccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCCCCCCccCCccccCCCCcccEEcCceeEecCCCeEEeccCC
Q psy17260 186 QNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCF 265 (679)
Q Consensus 186 ~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~~ip~v~~~p~RC~~~~C~AYiNpf~~~~~~g~~W~C~~C~ 265 (679)
+.++.++||+|||+||+++.++++++|||||+|+||++.+++|+++++|+||++ |+|||||||+|+++|++|+||||+
T Consensus 5 ~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~--CraylNPf~~~d~~~~~W~C~~C~ 82 (761)
T PLN00162 5 ELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRT--CRAVLNPYCRVDFQAKIWICPFCF 82 (761)
T ss_pred hhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCC--CcCEECCceEEecCCCEEEccCCC
Confidence 567889999999999999999999999999999999988889999999999999 999999999999999999999999
Q ss_pred CCCCCCcccccccCCCCCCcccCCCcceEEecC---CCCCCCcEEEEEEECCcChhhHHHHHHHHHHHhhcCCCCcEEEE
Q psy17260 266 QRNAFPPQYAAITEQHQPAELHPQFTTIEYTIP---KMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGL 342 (679)
Q Consensus 266 ~~N~vp~~Y~~~~~~~~rpEL~~~~~tvEy~~~---~~~~~pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp~~~~VG~ 342 (679)
..|++|++|..+++.++||||.++++||||.+| .+++.||+|+||||+|.++++++.++++|+++|+.||++++|||
T Consensus 83 ~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~~pp~fvFvID~s~~~~~l~~lk~sl~~~L~~LP~~a~VGl 162 (761)
T PLN00162 83 QRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSPPVFVFVVDTCMIEEELGALKSALLQAIALLPENALVGL 162 (761)
T ss_pred CCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCCCCcEEEEEEecchhHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 999999999988888999999777999999999 78899999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCCCC-CCCCCCCC-CCCCCCCCCCCceeehHHhHHHHHH
Q psy17260 343 ITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKYSM-SAPAPAPR-PGQPPRPARTQFLQPVEACEMYATD 420 (679)
Q Consensus 343 ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~~~-p~~~g~~~-~~~~~~~~~~~flvpl~e~~~~i~~ 420 (679)
||||++||||+|+.+++++++||+|+|+++.+|+.+++++++... ++..+... ......+..++||+|++||+..|++
T Consensus 163 ITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~ 242 (761)
T PLN00162 163 ITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNS 242 (761)
T ss_pred EEECCEEEEEEcCCCCCcceEEecCCccCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHH
Confidence 999999999999988899999999999999999999998866322 22110000 0001123467999999999999999
Q ss_pred HHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhhc----c--------------------------CCCCCccCcCCCC
Q psy17260 421 LLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGT----L--------------------------IRSHNDIHKGNNK 470 (679)
Q Consensus 421 lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~~----~--------------------------lrs~~di~~~~~~ 470 (679)
+||+|+++.|+++.++++.||+|+||++|..+|+.+ | +|+|+|+++++.+
T Consensus 243 lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~ 322 (761)
T PLN00162 243 ALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAP 322 (761)
T ss_pred HHHhhhccccccCCCCCCCccHHHHHHHHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhh
Confidence 999999999999999999999999999999999843 2 6788888888889
Q ss_pred CCccchhHHHHHHHHHhh-hcceeEEEEcC-----------------------Cccccc-------------------c-
Q psy17260 471 LPGRMATKITKGLALRAA-YCRAIEYLLVP-----------------------PWINGL-------------------L- 506 (679)
Q Consensus 471 ~~~~~a~~fY~~La~~~~-~~~svD~~~~~-----------------------~sF~~~-------------------~- 506 (679)
++ +++.+||++||.+|+ .+++||+|..+ ++|+++ +
T Consensus 323 ~~-~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG~v~~~~sF~~~~f~~~l~r~~~r~~~~~~~~g 401 (761)
T PLN00162 323 YY-KKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLGLS 401 (761)
T ss_pred hc-chHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCcEEEEeCCcChHHHHHHHHHHhccccccccccc
Confidence 99 999999999999999 99999977433 344321 1
Q ss_pred --------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecCC-CCCCCCCCceEEE
Q psy17260 507 --------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQH-GAPIPQGGPGCIQ 577 (679)
Q Consensus 507 --------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~~-~~~l~~~~~~~iQ 577 (679)
||+|++|+++||||.....++.++||+++|+|+|+.|+++++++++|++|+|++++.. ..+++++..+|||
T Consensus 402 f~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~~~~~~~~iQ 481 (761)
T PLN00162 402 FNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQPPGQQFFLQ 481 (761)
T ss_pred ceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCCCCCceEEEE
Confidence 9999999999999998888888999999999999999999999999999999999875 2345566789999
Q ss_pred EEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhccc---
Q psy17260 578 FITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLEGGA--- 654 (679)
Q Consensus 578 ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~ld~~li~il~~y--- 654 (679)
||++||+.+|+|||||||++++|+. ++++.+++++|||||++++|||+|++++++++..|+++|||+.|++++++|
T Consensus 482 ~a~lYt~~~G~rRiRV~T~~~~~~~-~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li~~~~~f~~Y 560 (761)
T PLN00162 482 FLTRYQHSNGQTRLRVTTVTRRWVE-GSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGDY 560 (761)
T ss_pred EEEEEEcCCCCEEEEEEccccCccC-CCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999863 347789999999999999999999999999999999999999999999776
Q ss_pred -------cccCCcccH-HHHHHHHhccccCCC
Q psy17260 655 -------PVLTEDVSL-QVFMEHLKKLAVSST 678 (679)
Q Consensus 655 -------liLPe~lkl-P~~~~~L~rS~~l~~ 678 (679)
|+||++||+ |+||||||||++|+.
T Consensus 561 rk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~ 592 (761)
T PLN00162 561 RKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQV 592 (761)
T ss_pred cccCCccccCCHHHHHHHHHHHHHhhhhhccC
Confidence 999999999 999999999999874
|
|
| >KOG1986|consensus | Back alignment and domain information |
|---|
| >KOG1984|consensus | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1985|consensus | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >KOG1986|consensus | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 679 | ||||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-155 | ||
| 3eg9_A | 764 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-06 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 1e-155 | ||
| 2nup_A | 769 | Crystal Structure Of The Human Sec23a24A HETERODIME | 2e-06 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 1e-154 | ||
| 3efo_A | 765 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-06 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 4e-51 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 4e-26 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 5e-51 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 3e-26 | ||
| 2yrc_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 8e-19 | ||
| 2yrd_A | 59 | Solution Structure Of The Zf-Sec23_sec24 From Human | 2e-18 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 2e-10 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-10 | ||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 7e-10 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 3e-08 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 3e-08 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 3e-05 |
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
|
| >pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 | Back alignment and structure |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 | Back alignment and structure |
| >pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 | Back alignment and structure |
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 413 bits (1062), Expect = e-134
Identities = 285/557 (51%), Positives = 359/557 (64%), Gaps = 85/557 (15%)
Query: 176 SMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPL 235
MTTY EF QNEERDG+R +WNVWPSS+LEA+R+V+PV L+ PLKE+PDLPP+QYEP+
Sbjct: 4 GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPV 63
Query: 236 LCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEY 295
LC R CRA+LNPLCQVDY++KLW CNFC+QRN FPP YA I+E +QPAEL PQF++IEY
Sbjct: 64 LCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEY 123
Query: 296 TIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELG 355
+ + PL+FL+VVDTCM++E+L AL++S+QMSLSLLP ALVGLITFG+MVQVHELG
Sbjct: 124 VVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELG 183
Query: 356 CEGISRSYVFRGTKDVPAQRLQEMLRIGKYSMSAPAPAPRPGQPPRPARTQFLQPVEACE 415
CEGIS+SYVFRGTKD+ A++LQEML + K ++ P+ QPP R FLQPV+ +
Sbjct: 184 CEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNR--FLQPVQKID 241
Query: 416 MYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGTL------------------ 457
M TDLL LQ+ P V QG+ +GVA IAVGLLE T
Sbjct: 242 MNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQG 301
Query: 458 ------------IRSHNDIHKGNNKLPGRMATKITKGLALRAA--------------YCR 491
IRS +DI K N K + TK + LA RAA
Sbjct: 302 PGMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 492 AIEYLLVPPWINGLLLEYE--------------------------------------LCL 513
+E P G ++ + + +
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 514 MGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPIPQGGP 573
GAIGPCVSLN K CVS+ ++G GGT WK+C LSP TTLA++FE+VNQH APIPQGG
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 480
Query: 574 GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQ 633
G IQF+T YQ SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M R+ + RAE
Sbjct: 481 GAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET 540
Query: 634 DDGPDVMRWADRTLIRL 650
++GPDV+RW DR LIRL
Sbjct: 541 EEGPDVLRWLDRQLIRL 557
|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 2yrc_A | 59 | Protein transport protein SEC23A; zinc binding, co | 99.6 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 99.48 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 99.43 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 97.88 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 97.76 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 97.07 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 97.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 96.28 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 95.18 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 94.72 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 94.37 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 94.37 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 94.3 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 94.13 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 94.09 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 94.01 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 93.77 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 93.75 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 93.6 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 93.57 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 93.36 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 93.31 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 93.25 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 93.16 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 91.82 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 91.69 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 91.21 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 91.06 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 90.8 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 90.58 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 89.77 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 86.21 |
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-98 Score=879.94 Aligned_cols=492 Identities=59% Similarity=0.995 Sum_probs=428.5
Q ss_pred CCccchhhhhhccCCCCeeeeeccccCCCHHHHhhCCCCeEEEEccCCCCCCCCCccCCccccCCCCcccEEcCceeEec
Q psy17260 175 ISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDY 254 (679)
Q Consensus 175 ~p~~~~~~~~~~n~~p~~iR~T~~~~P~t~~~~~~~~lPlg~vv~Pf~~~~~ip~v~~~p~RC~~~~C~AYiNpf~~~~~ 254 (679)
.|+.+|...+++||+|+|||+|||+||.+++++++++||||++|+||++.+++|+++++|+||++++|+|||||||+|++
T Consensus 3 ~~~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~ 82 (769)
T 2nut_A 3 MGMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDY 82 (769)
T ss_dssp ----CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEET
T ss_pred CcccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeC
Confidence 45677888899999999999999999999999999999999999999988889999999999987679999999999999
Q ss_pred CCCeEEeccCCCCCCCCcccccccCCCCCCcccCCCcceEEecCCCCCCCcEEEEEEECCcChhhHHHHHHHHHHHhhcC
Q psy17260 255 KSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPKMQCAPLVFLFVVDTCMDEEELGALRDSLQMSLSLL 334 (679)
Q Consensus 255 ~g~~W~C~~C~~~N~vp~~Y~~~~~~~~rpEL~~~~~tvEy~~~~~~~~pp~~vFvIDvs~~a~~l~~l~~si~~~L~~L 334 (679)
+|++|+||||++.|++|++|+.+++.++||||.++++||||++|++.+.||+|+||||+|.+++++++++++|+++|+.|
T Consensus 83 ~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~L 162 (769)
T 2nut_A 83 RAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLL 162 (769)
T ss_dssp TTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCCCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCCCCCEEEEEEECCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999977777889999656899999999888999999999999999999999999999999999
Q ss_pred CCCcEEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhcCCC---------CCCCCCCCCCCCCCCCCCCC
Q psy17260 335 PKNALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRIGKY---------SMSAPAPAPRPGQPPRPART 405 (679)
Q Consensus 335 p~~~~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l~d~---------~~p~~~g~~~~~~~~~~~~~ 405 (679)
|++++|||||||++||||+++...+++++||+|+|+++.+|+..|++++|. .++| +.+.+
T Consensus 163 p~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f-----------~~p~~ 231 (769)
T 2nut_A 163 PPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQ-----------PPPSN 231 (769)
T ss_dssp CTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC------------------------------CCC
T ss_pred CCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccC-----------CCccc
Confidence 999999999999999999999999999999999999998888778877641 2232 11237
Q ss_pred CceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhh----cc------------------------
Q psy17260 406 QFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEG----TL------------------------ 457 (679)
Q Consensus 406 ~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~----~~------------------------ 457 (679)
+||+|++||++.|+++|++|++++|++++++++.||+|+||++|..+|+. .|
T Consensus 232 ~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~ 311 (769)
T 2nut_A 232 RFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELK 311 (769)
T ss_dssp SSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred ceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCcccc
Confidence 89999999999999999999999999999999999999999999999994 22
Q ss_pred --CCCCCccCcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCCc-----------------------cccc------
Q psy17260 458 --IRSHNDIHKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPPW-----------------------INGL------ 505 (679)
Q Consensus 458 --lrs~~di~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~s-----------------------F~~~------ 505 (679)
+|+|+|+++++++++ +++.+||++||.+|+ .+++||+|.++.+ |+.+
T Consensus 312 ~~~rs~~d~~ke~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l 390 (769)
T 2nut_A 312 TPIRSWHDIDKDNAKYV-KKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTF 390 (769)
T ss_dssp SCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHH
T ss_pred cccccccccccchhhhc-cchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHH
Confidence 345556667778999 999999999999999 9999998865532 3211
Q ss_pred -------------c---------cCCCeEEeeeeccccccCCCCccccccccCCCCcCeEEEcCCCCCceEEEEEEEecC
Q psy17260 506 -------------L---------LEYELCLMGAIGPCVSLNLKNQCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQ 563 (679)
Q Consensus 506 -------------~---------~S~gl~v~~~iG~~~~~~~~~~~isd~~ig~g~t~~~~l~~ld~dtsia~~fei~~~ 563 (679)
+ ||+||+|+++|||+...+.+++++||+++|+++|++|+++++|+|+||+|+|++++.
T Consensus 391 ~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~ 470 (769)
T 2nut_A 391 QRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQ 470 (769)
T ss_dssp HHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC--
T ss_pred HHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCc
Confidence 1 999999999999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEEEEEeEcCCCCEEEEEEccccccccCCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q psy17260 564 HGAPIPQGGPGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWA 643 (679)
Q Consensus 564 ~~~~l~~~~~~~iQ~allYt~~~GerriRV~T~~l~~~~~ss~~~~v~~s~D~ea~~~llaK~a~~~~~~~~~~d~~~~l 643 (679)
++.+++++..+|||||++||+.+|+|||||||++++|++..+++.++|++||+||++++|||+|++++++++..|+++||
T Consensus 471 ~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~l 550 (769)
T 2nut_A 471 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWL 550 (769)
T ss_dssp --------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHH
T ss_pred cccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 76556667899999999999999999999999999986322123699999999999999999999999999999999999
Q ss_pred HHHHHHhhccc----------cccCCcccH-HHHHHHHhccccCCC
Q psy17260 644 DRTLIRLEGGA----------PVLTEDVSL-QVFMEHLKKLAVSST 678 (679)
Q Consensus 644 d~~li~il~~y----------liLPe~lkl-P~~~~~L~rS~~l~~ 678 (679)
|+++++++++| |+||++||+ |+|||+|+||++|+.
T Consensus 551 d~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~ 596 (769)
T 2nut_A 551 DRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQV 596 (769)
T ss_dssp HHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCC
T ss_pred HHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCC
Confidence 99999986654 999999999 999999999999974
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 679 | ||||
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 3e-41 | |
| d2qtva2 | 176 | b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S | 2e-16 | |
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 8e-41 | |
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 4e-18 | |
| d2qtva5 | 75 | g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar | 1e-29 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 1e-20 | |
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 2e-06 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 4e-15 | |
| d2qtva1 | 103 | a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar | 1e-14 | |
| d2qtva4 | 142 | d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha | 1e-09 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 7e-06 |
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Common fold of diphtheria toxin/transcription factors/cytochrome f superfamily: beta-sandwich domain of Sec23/24 family: beta-sandwich domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 146 bits (369), Expect = 3e-41
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 510 ELCLMGAIGPCVSLNLKN-QCVSDQDLGMGGTASWKMCTLSPNTTLALFFEIVNQHGAPI 568
+L + G IG ++ + +S+ ++G+G T++WKM +LSP + A+FFEI N
Sbjct: 64 DLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSN 123
Query: 569 PQGGP---------GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGF 614
P QFIT YQ SG ++RVTT+A T I++ F
Sbjct: 124 PMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTP--AIAASF 176
|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 | Back information, alignment and structure |
|---|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.94 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.85 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.76 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.72 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.55 | |
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.41 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.27 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.69 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.97 | |
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.87 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 96.09 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 93.8 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 93.78 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 93.77 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 93.29 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 93.24 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 92.79 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 92.66 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 91.61 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 89.06 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 88.7 |
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec23 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.5e-33 Score=285.15 Aligned_cols=201 Identities=34% Similarity=0.466 Sum_probs=168.0
Q ss_pred CCcEEEEEEECCcChhhHHHHHHHHHHHhhcCCCCcEEEEEEECCeEEEEEcCCCCccceeeecCCCCCchhHHHHhhhc
Q psy17260 303 APLVFLFVVDTCMDEEELGALRDSLQMSLSLLPKNALVGLITFGQMVQVHELGCEGISRSYVFRGTKDVPAQRLQEMLRI 382 (679)
Q Consensus 303 ~pp~~vFvIDvs~~a~~l~~l~~si~~~L~~Lp~~~~VG~ITfd~~V~~y~l~~~~~~~~~Vf~g~~~l~~~ql~~~l~l 382 (679)
.||+||||||+|+++++++.++++|+++|+.||++++|||||||++||||++++...++++||+|+++++.+++.++++.
T Consensus 1 ~Pp~yvFvIDvs~~a~~~~~l~~~l~~~l~~lp~~~~VgiITfd~~v~~y~l~~~~~~~~~v~~g~~~~~~~~~~~~~~~ 80 (271)
T d2qtva3 1 VPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTG 80 (271)
T ss_dssp SCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEECSCSSCCEEEEEESSSCCCHHHHHHHHHC
T ss_pred CCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCcCccceeccCccccCHHHHHHHhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999988877755
Q ss_pred CCCCCCCC--CCCC-CCCCCCCCCCCCceeehHHhHHHHHHHHHHhcCCCCcccCCCCCCCchHHHHHHHHHHhhhc---
Q psy17260 383 GKYSMSAP--APAP-RPGQPPRPARTQFLQPVEACEMYATDLLAALQKGPVAVHQGREHCGPTGVAHVIAVGLLEGT--- 456 (679)
Q Consensus 383 ~d~~~p~~--~g~~-~~~~~~~~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~~~~~c~G~AL~~A~~lL~~~--- 456 (679)
.....+.. ...+ ......++..++|++|+++|++.|+++|++|++++|++++++++.||+|+||++|..+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~ 160 (271)
T d2qtva3 81 QKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKN 160 (271)
T ss_dssp CC-----------------CCTTCGGGGSEEHHHHHHHHHHHHHHCCCCCCCCCTTBCCCCCHHHHHHHHHHHHHHHCTT
T ss_pred cccccccccccccccccccccCCccccccccHHHHHHHHHHHHHHhccCcccCCCCCCcccchHHHHHHHHHHHHhhccC
Confidence 43211100 0000 00011234567899999999999999999999999999999999999999999999999842
Q ss_pred -c--------------------------CCCCCccCcCCCCCCccchhHHHHHHHHHhh-hcceeEEEEcCCcccc
Q psy17260 457 -L--------------------------IRSHNDIHKGNNKLPGRMATKITKGLALRAA-YCRAIEYLLVPPWING 504 (679)
Q Consensus 457 -~--------------------------lrs~~di~~~~~~~~~~~a~~fY~~La~~~~-~~~svD~~~~~~sF~~ 504 (679)
| +|+|+|+++++.+++ +++.+||++||.+|+ .++|||+|+.+.++.+
T Consensus 161 ~gGkI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~-~~a~~fY~~la~~~~~~~isvDlF~~s~~~~d 235 (271)
T d2qtva3 161 IPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHY-KKACKFYNQIAQRVAANGHTVDIFAGCYDQIG 235 (271)
T ss_dssp SCEEEEEEESSCCCSSSSCSSCSBTTSCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTEEEEEEEECSSCCS
T ss_pred CCcEEEEEeCCCCCCCCccccccccccccCCccchhhhhhhhh-hhHHHHHHHHHHHHHHCCeEEEEEEecCccCC
Confidence 2 455666667777888 999999999999999 9999999999888754
|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|