Psyllid ID: psy17306
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | 2.2.26 [Sep-21-2011] | |||||||
| Q8CGY8 | 1046 | UDP-N-acetylglucosamine-- | yes | N/A | 0.318 | 0.275 | 0.611 | 6e-92 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | yes | N/A | 0.318 | 0.275 | 0.611 | 7e-92 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | yes | N/A | 0.318 | 0.275 | 0.611 | 8e-92 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | yes | N/A | 0.318 | 0.275 | 0.611 | 8e-92 | |
| P56558 | 1036 | UDP-N-acetylglucosamine-- | yes | N/A | 0.318 | 0.277 | 0.611 | 9e-92 | |
| Q24368 | 1027 | Chromatin-remodeling comp | no | N/A | 0.205 | 0.181 | 0.769 | 2e-69 | |
| Q3ZC84 | 475 | Cytosolic non-specific di | no | N/A | 0.232 | 0.442 | 0.580 | 7e-68 | |
| Q5R432 | 475 | Cytosolic non-specific di | no | N/A | 0.224 | 0.427 | 0.570 | 4e-67 | |
| Q6Q0N1 | 475 | Cytosolic non-specific di | no | N/A | 0.224 | 0.427 | 0.575 | 6e-67 | |
| Q9D1A2 | 475 | Cytosolic non-specific di | no | N/A | 0.224 | 0.427 | 0.580 | 7e-67 |
| >sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 339 bits (869), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 5EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 186/304 (61%), Positives = 219/304 (72%), Gaps = 16/304 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 13 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 72
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 73 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 132
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 133 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 192
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 193 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 251 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 310
Query: 296 QYNP 299
+ P
Sbjct: 311 RLCP 314
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/191 (76%), Positives = 162/191 (84%), Gaps = 5/191 (2%)
Query: 717 ANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLD----APTQSV 772
AN +F S ITDEDIDVILER EAKT E + LGESSLR FT+D A T SV
Sbjct: 606 ANQVF-SSKETDITDEDIDVILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSV 664
Query: 773 YKFEGEDYREKQKIVPIGHWIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPI 832
Y+FEGED+REKQK+ +G+WIEPPKRERKANYAVDAYF+EALR SEPKAPKAPRPPKQPI
Sbjct: 665 YQFEGEDWREKQKLNALGNWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPI 724
Query: 833 VQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKIDESEPLTEE 892
VQDFQFFPPRLFE+LDQEIYYFRKTVGYKVPKN ELGSDATK Q+EEQ+KIDE+EPLTEE
Sbjct: 725 VQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEE 784
Query: 893 ELAEKEELLTQ 903
E+ EKE LL+Q
Sbjct: 785 EIQEKENLLSQ 795
|
Energy-transducing component of the chromatin-remodeling complexes NURF (nucleosome-remodeling factor), ACF (ATP-utilizing chromatin assembly and remodeling factor), and CHRAC (chromatin accessibility complex). NURF catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin. It is required for homeotic gene expression, proper larval blood cell development, normal male X chromosome morphology, ecdysteroid signaling and metamorphosis. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q3ZC84|CNDP2_BOVIN Cytosolic non-specific dipeptidase OS=Bos taurus GN=CNDP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 154/212 (72%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG L++ GKILIP I + V P+ + E
Sbjct: 214 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLIMLMGCLMDKKGKILIPGISEAVAPVTEEE 273
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
+ Y+KIDFD E++ + L K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 274 LELYDKIDFDLEEYARDVGAGTLLHGCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 333
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VPN TP+ V + V YL + + +SPNKFK Y+ GK W ++ HP+
Sbjct: 334 RKVVGKFSIRLVPNMTPEVVSEQVTSYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPH 393
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y+A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 394 YLAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 425
|
Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 8 |
| >sp|Q5R432|CNDP2_PONAB Cytosolic non-specific dipeptidase OS=Pongo abelii GN=CNDP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/212 (57%), Positives = 153/212 (72%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC++KDLHSG++GGSVHEAMTDLI +MG LV+ G ILIP I + V + + E
Sbjct: 214 CYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAVTEEE 273
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
+ Y+ IDFD E+F + L ++K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 274 HKLYDDIDFDIEEFAKDVGAQILLHSNKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 333
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VPN TP+ V + V YL + + SPN+FK Y+ GK W ++ HP+
Sbjct: 334 RKVVGKFSIRLVPNMTPEVVSEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPH 393
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
YVA RA + V+ VEPDLTREGGSIP+TLTF+
Sbjct: 394 YVAGRRAMRTVFGVEPDLTREGGSIPVTLTFQ 425
|
Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly. Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 8 |
| >sp|Q6Q0N1|CNDP2_RAT Cytosolic non-specific dipeptidase OS=Rattus norvegicus GN=Cndp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 122/212 (57%), Positives = 151/212 (71%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG L++ GKILIP I V P+ D E
Sbjct: 214 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLIDKKGKILIPGINDAVAPVTDEE 273
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
+ Y+ IDFD E+F + L + K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 274 HELYDHIDFDMEEFAKDVGAGTLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 333
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VP+ P+ V + V YL++ + SPNKFK Y+ GK W ++ HP+
Sbjct: 334 RKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPH 393
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 394 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 425
|
Hydrolyzes a variety of dipeptides including L-carnosine but has a strong preference for Cys-Gly. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 8 |
| >sp|Q9D1A2|CNDP2_MOUSE Cytosolic non-specific dipeptidase OS=Mus musculus GN=Cndp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 150/212 (70%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG LV+ GKILIP I V P+ D E
Sbjct: 214 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEE 273
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ IDFD E+F + L + K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 274 HALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 333
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VP+ P+ V + V YL++ + SPNKFK Y+ GK W ++ HP+
Sbjct: 334 RKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPH 393
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 394 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 425
|
Hydrolyzes a variety of dipeptides including L-carnosine. Has a strong preference for Cys-Gly. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | ||||||
| 242023889 | 1041 | UDP-N-acetylglucosamine--peptide N-acety | 0.340 | 0.295 | 0.604 | 1e-96 | |
| 350396796 | 1065 | PREDICTED: UDP-N-acetylglucosamine--pept | 0.328 | 0.278 | 0.630 | 1e-95 | |
| 340715916 | 1065 | PREDICTED: UDP-N-acetylglucosamine--pept | 0.328 | 0.278 | 0.630 | 1e-95 | |
| 270004555 | 1054 | hypothetical protein TcasGA2_TC003916 [T | 0.328 | 0.281 | 0.624 | 2e-95 | |
| 189235894 | 1086 | PREDICTED: similar to AGAP006254-PA [Tri | 0.328 | 0.273 | 0.624 | 2e-95 | |
| 328777929 | 1065 | PREDICTED: UDP-N-acetylglucosamine--pept | 0.328 | 0.278 | 0.627 | 3e-95 | |
| 380019749 | 1065 | PREDICTED: UDP-N-acetylglucosamine--pept | 0.328 | 0.278 | 0.627 | 3e-95 | |
| 229577290 | 1061 | O-glycosyltransferase [Nasonia vitripenn | 0.328 | 0.279 | 0.609 | 1e-94 | |
| 357612087 | 1054 | hypothetical protein KGM_21815 [Danaus p | 0.329 | 0.282 | 0.619 | 3e-93 | |
| 307173081 | 1092 | UDP-N-acetylglucosamine--peptide N-acety | 0.317 | 0.262 | 0.633 | 4e-93 |
| >gi|242023889|ref|XP_002432363.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative [Pediculus humanus corporis] gi|212517786|gb|EEB19625.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 202/334 (60%), Positives = 234/334 (70%), Gaps = 26/334 (7%)
Query: 1 MNDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK 60
MNDI +GLL+LAHREYQAG+YE+AERHCMQLWRQE NNTGVLLLLSSIHFQCR+LDK
Sbjct: 20 MNDIQLSSVGLLDLAHREYQAGEYENAERHCMQLWRQEPNNTGVLLLLSSIHFQCRRLDK 79
Query: 61 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL
Sbjct: 80 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 139
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYCV 169
VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK D
Sbjct: 140 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETYSDFAVA 199
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-A 226
S+LG + A G + A + H E + +A + N G ++ + A + L A
Sbjct: 200 WSNLGCVFNATGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRA 257
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G + +
Sbjct: 258 LNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVPE 317
Query: 287 AVQAYVTALQYNPL----------LKKEDGWNTE 310
A Y TAL+ P +K+E G+ E
Sbjct: 318 AEDCYNTALRLCPTHADSLNNLANIKREQGYVEE 351
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350396796|ref|XP_003484668.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/314 (63%), Positives = 229/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MN+I QL +GLLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+
Sbjct: 32 MNEIQQLSTVGLLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLE 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAH+S+LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHYSSLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D
Sbjct: 152 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAV 211
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 212 AWSNLGCVFNAQGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 269
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 270 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVV 329
Query: 286 QAVQAYVTALQYNP 299
+A Y TAL+ P
Sbjct: 330 EAEDCYNTALRLCP 343
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340715916|ref|XP_003396453.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 1 [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/314 (63%), Positives = 229/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MN+I QL +GLLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+
Sbjct: 32 MNEIQQLSTVGLLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLE 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAH+S+LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHYSSLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D
Sbjct: 152 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAV 211
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 212 AWSNLGCVFNAQGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 269
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 270 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVV 329
Query: 286 QAVQAYVTALQYNP 299
+A Y TAL+ P
Sbjct: 330 EAEDCYNTALRLCP 343
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270004555|gb|EFA01003.1| hypothetical protein TcasGA2_TC003916 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 228/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MND+ QL +GLLELAHREYQAGDYE+AERHCMQLWRQ+ NTGVLLLLSSIHFQCR+LD
Sbjct: 32 MNDVPQLSSVGLLELAHREYQAGDYENAERHCMQLWRQDQTNTGVLLLLSSIHFQCRRLD 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAHFSTLAIKQNPLLAEAYSNLGNVYKER QLQEAL+NYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERSQLQEALDNYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAY+TALQYNPDLYCVRSDLGNLLKALGRLDEAK D
Sbjct: 152 LVAAGDMEQAVQAYITALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAV 211
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 212 AWSNLGCVFNAQGEIWLAIH-HFEKAVGLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 269
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 270 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVA 329
Query: 286 QAVQAYVTALQYNP 299
+A + Y TAL+ P
Sbjct: 330 EAEECYNTALRLCP 343
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189235894|ref|XP_967579.2| PREDICTED: similar to AGAP006254-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 196/314 (62%), Positives = 228/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MND+ QL +GLLELAHREYQAGDYE+AERHCMQLWRQ+ NTGVLLLLSSIHFQCR+LD
Sbjct: 64 MNDVPQLSSVGLLELAHREYQAGDYENAERHCMQLWRQDQTNTGVLLLLSSIHFQCRRLD 123
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAHFSTLAIKQNPLLAEAYSNLGNVYKER QLQEAL+NYRHAVRLKPDFIDGYINLAAA
Sbjct: 124 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERSQLQEALDNYRHAVRLKPDFIDGYINLAAA 183
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAY+TALQYNPDLYCVRSDLGNLLKALGRLDEAK D
Sbjct: 184 LVAAGDMEQAVQAYITALQYNPDLYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAV 243
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 244 AWSNLGCVFNAQGEIWLAIH-HFEKAVGLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 301
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 302 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVA 361
Query: 286 QAVQAYVTALQYNP 299
+A + Y TAL+ P
Sbjct: 362 EAEECYNTALRLCP 375
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328777929|ref|XP_003249419.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 197/314 (62%), Positives = 229/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MN+I QL +GLLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+
Sbjct: 32 MNEIQQLSTVGLLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLE 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAH+S+LAIKQNPLLAEAYSNLGNV+KERGQLQEALENYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHYSSLAIKQNPLLAEAYSNLGNVFKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D
Sbjct: 152 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAV 211
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 212 AWSNLGCVFNAQGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 269
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 270 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVV 329
Query: 286 QAVQAYVTALQYNP 299
+A Y TAL+ P
Sbjct: 330 EAEDCYNTALRLCP 343
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380019749|ref|XP_003693765.1| PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like isoform 2 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 197/314 (62%), Positives = 229/314 (72%), Gaps = 17/314 (5%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
MN+I QL +GLLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+
Sbjct: 32 MNEIQQLSTVGLLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLE 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAH+S+LAIKQNPLLAEAYSNLGNV+KERGQLQEALENYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHYSSLAIKQNPLLAEAYSNLGNVFKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYC 168
LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D
Sbjct: 152 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAV 211
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL- 225
S+LG + A G + A + H E + +A + N G ++ + A + L
Sbjct: 212 AWSNLGCVFNAQGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLR 269
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 270 ALNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVV 329
Query: 286 QAVQAYVTALQYNP 299
+A Y TAL+ P
Sbjct: 330 EAEDCYNTALRLCP 343
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|229577290|ref|NP_001153341.1| O-glycosyltransferase [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/323 (60%), Positives = 230/323 (71%), Gaps = 26/323 (8%)
Query: 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA 68
+GLLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+KSAH+STLA
Sbjct: 36 VGLLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLEKSAHYSTLA 95
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ
Sbjct: 96 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 155
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYCVRSDLGNLL 177
AVQAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D S+LG +
Sbjct: 156 AVQAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAVAWSNLGCVF 215
Query: 178 KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLA 234
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 216 NAQGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALNLSPNNA 273
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
+ NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G + +A + Y TA
Sbjct: 274 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTA 333
Query: 295 LQYNPL----------LKKEDGW 307
L+ P +K+E G+
Sbjct: 334 LRLCPTHADSLNNLANIKREQGY 356
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357612087|gb|EHJ67792.1| hypothetical protein KGM_21815 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/313 (61%), Positives = 225/313 (71%), Gaps = 15/313 (4%)
Query: 1 MNDIAQLG-IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD 59
M++I Q+ +GLLELAHREYQAGDY+SAE HCMQLWRQ+ NTGVLLLLSSIHFQCR+LD
Sbjct: 32 MSEIQQISTVGLLELAHREYQAGDYDSAELHCMQLWRQDGTNTGVLLLLSSIHFQCRRLD 91
Query: 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA
Sbjct: 92 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 151
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC----VRSDLGN 175
LVAAGDMEQAVQAYVTALQYNP+LYCVRSDLGNLLKALGRLDEAK Y R D
Sbjct: 152 LVAAGDMEQAVQAYVTALQYNPELYCVRSDLGNLLKALGRLDEAKACYLKAIETRPDFAV 211
Query: 176 LLKALGRLDEAKN------LHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-A 226
LG + A++ H E + +A + N G ++ + A + L A
Sbjct: 212 AWSNLGCVFNAQSEIWLAIHHFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRA 270
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
+ +P A + NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G +
Sbjct: 271 LNLSPNNAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVD 330
Query: 287 AVQAYVTALQYNP 299
A + Y TAL+ P
Sbjct: 331 AEECYNTALRLCP 343
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307173081|gb|EFN64211.1| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/303 (63%), Positives = 222/303 (73%), Gaps = 16/303 (5%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LLELAHREYQAGDYE+AERHCMQLWRQETNNTGVLLLLSSIHFQCR+L+KSAH+S+LAIK
Sbjct: 63 LLELAHREYQAGDYENAERHCMQLWRQETNNTGVLLLLSSIHFQCRRLEKSAHYSSLAIK 122
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV
Sbjct: 123 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 182
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-----------DLYCVRSDLGNLLKA 179
QAYVTALQYNPDLYCVRSDLGNLLKAL RLDEAK D S+LG + A
Sbjct: 183 QAYVTALQYNPDLYCVRSDLGNLLKALARLDEAKACYLKAIETRPDFAVAWSNLGCVFNA 242
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAEA 236
G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 243 QGEIWLAIH-HFEKAVALDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALNLSPNNAVV 300
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ NL VY E+G + A++ YR A+ L+P+F D Y NLA AL G + +A + Y TAL+
Sbjct: 301 HGNLACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVVEAEECYNTALR 360
Query: 297 YNP 299
P
Sbjct: 361 LCP 363
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 904 | ||||||
| ZFIN|ZDB-GENE-030131-9631 | 1062 | ogt.1 "O-linked N-acetylglucos | 0.318 | 0.271 | 0.605 | 3.1e-108 | |
| UNIPROTKB|F1NX56 | 1035 | OGT "Uncharacterized protein" | 0.318 | 0.278 | 0.611 | 3.9e-108 | |
| UNIPROTKB|A5D7G1 | 1036 | OGT "OGT protein" [Bos taurus | 0.318 | 0.277 | 0.611 | 1.3e-107 | |
| RGD|62060 | 1036 | Ogt "O-linked N-acetylglucosam | 0.318 | 0.277 | 0.611 | 1.3e-107 | |
| UNIPROTKB|E2QSQ5 | 1046 | OGT "Uncharacterized protein" | 0.318 | 0.275 | 0.611 | 1.3e-107 | |
| UNIPROTKB|O15294 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.318 | 0.275 | 0.611 | 1.3e-107 | |
| UNIPROTKB|F1RSV2 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.318 | 0.275 | 0.611 | 1.3e-107 | |
| UNIPROTKB|Q27HV0 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.318 | 0.275 | 0.611 | 1.3e-107 | |
| UNIPROTKB|P81436 | 1046 | OGT "UDP-N-acetylglucosamine-- | 0.318 | 0.275 | 0.611 | 1.3e-107 | |
| MGI|MGI:1339639 | 1046 | Ogt "O-linked N-acetylglucosam | 0.318 | 0.275 | 0.611 | 1.3e-107 |
| ZFIN|ZDB-GENE-030131-9631 ogt.1 "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.1e-108, Sum P(2) = 3.1e-108
Identities = 184/304 (60%), Positives = 220/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQ+GD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQSGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNP+LAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPMLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAGYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G++ +A + Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGNVSEAEECYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| UNIPROTKB|F1NX56 OGT "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 186/304 (61%), Positives = 220/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 13 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 72
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 73 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 132
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 133 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 192
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 193 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A + Y TAL
Sbjct: 251 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTAL 310
Query: 296 QYNP 299
+ P
Sbjct: 311 RLCP 314
|
|
| UNIPROTKB|A5D7G1 OGT "OGT protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 13 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 72
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 73 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 132
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 133 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 192
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 193 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 251 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 310
Query: 296 QYNP 299
+ P
Sbjct: 311 RLCP 314
|
|
| RGD|62060 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 13 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 72
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 73 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 132
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 133 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 192
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 193 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 250
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 251 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 310
Query: 296 QYNP 299
+ P
Sbjct: 311 RLCP 314
|
|
| UNIPROTKB|E2QSQ5 OGT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| UNIPROTKB|O15294 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| UNIPROTKB|F1RSV2 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| UNIPROTKB|Q27HV0 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| UNIPROTKB|P81436 OGT "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
| MGI|MGI:1339639 Ogt "O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 186/304 (61%), Positives = 219/304 (72%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
GL ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 23 GLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 82
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 142
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR-----------SDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y S+LG +
Sbjct: 143 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 202
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESAHFSTL-AIKQNPLLAE 235
A G + A + H E + +A + N G ++ + A + L A+ +P A
Sbjct: 203 AQGEIWLAIH-HFEKAVTLDPNFLDAYI-NLGNVLKEARIFDRAVAAYLRALSLSPNHAV 260
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TAL
Sbjct: 261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 320
Query: 296 QYNP 299
+ P
Sbjct: 321 RLCP 324
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9P6I2 | DUG1_SCHPO | 3, ., 4, ., 1, 3, ., - | 0.5094 | 0.2345 | 0.4453 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 904 | |||
| cd05676 | 466 | cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp | 1e-121 | |
| cd05680 | 437 | cd05680, M20_dipept_like_3, Uncharacterized M20 Di | 7e-48 | |
| cd05677 | 434 | cd05677, M20_dipept_like_DUG2_type, M20 Defective | 7e-43 | |
| pfam09110 | 109 | pfam09110, HAND, HAND | 6e-41 | |
| cd03893 | 428 | cd03893, M20_Dipept_like, M20 Dipeptidases | 9e-41 | |
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 5e-34 | |
| PRK08201 | 456 | PRK08201, PRK08201, hypothetical protein; Provisio | 2e-32 | |
| PRK06446 | 436 | PRK06446, PRK06446, hypothetical protein; Provisio | 1e-27 | |
| cd05681 | 430 | cd05681, M20_dipept_like_4, Uncharacterized M20 Di | 2e-27 | |
| PRK09104 | 464 | PRK09104, PRK09104, hypothetical protein; Validate | 4e-21 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-14 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-14 | |
| cd05678 | 466 | cd05678, M20_dipept_like_1, Uncharacterized M20 Di | 5e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-13 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-12 | |
| PRK07907 | 449 | PRK07907, PRK07907, hypothetical protein; Provisio | 2e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 8e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-09 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 9e-09 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-08 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 3e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-08 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 7e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-07 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 3e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-06 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 1e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-05 | |
| cd08011 | 390 | cd08011, M20_ArgE_DapE_like6, M20 Peptidases with | 4e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-05 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-05 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 8e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 9e-05 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 9e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-04 | |
| COG0624 | 409 | COG0624, ArgE, Acetylornithine deacetylase/Succiny | 1e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 2e-04 | |
| PRK11447 | 1157 | PRK11447, PRK11447, cellulose synthase subunit Bcs | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 2e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 2e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-04 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 4e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 5e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 5e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 5e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 8e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 9e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 9e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 9e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.001 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 0.001 | |
| pfam07687 | 107 | pfam07687, M20_dimer, Peptidase dimerisation domai | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.002 | |
| cd05682 | 451 | cd05682, M20_dipept_like_5, Uncharacterized M20 Di | 0.002 | |
| CHL00033 | 168 | CHL00033, ycf3, photosystem I assembly protein Ycf | 0.002 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.002 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.002 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.003 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 0.003 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.003 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.003 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.003 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.004 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.004 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-121
Identities = 155/322 (48%), Positives = 189/322 (58%), Gaps = 62/322 (19%)
Query: 302 KKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVL------------------------- 336
K EDGW+T+PF L E+ L+ RG+ K PVL
Sbjct: 99 KLEDGWDTDPFTLT-EKDGKLYGRGS-TDDKGPVLGWLNAIEAYQKLGQDLPVNLKFCFE 156
Query: 337 --------GLASAIES-------------ISAN----QEK----------CAVNIKIECA 361
GL IE+ IS N +K C I++E A
Sbjct: 157 GMEESGSEGLDELIEARKDTFFSDVDYVCISDNYWLGTKKPCLTYGLRGICYFFIEVEGA 216
Query: 362 SKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFD 421
KDLHSG+FGGSVHE MTDLI +M LV+ +GKILIP IY V PL + E + YEKIDFD
Sbjct: 217 DKDLHSGVFGGSVHEPMTDLIALMSSLVDSDGKILIPGIYDLVAPLTEEEWELYEKIDFD 276
Query: 422 TEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIR 481
E++R I +L +K ++LM RWRYPSLS+HGIEGAFS PG KTVIP KV+GKFSIR
Sbjct: 277 MEEYREDIGVRRLLYDNKEELLMHRWRYPSLSIHGIEGAFSEPGAKTVIPAKVIGKFSIR 336
Query: 482 IVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKY 541
+VPN P+ VEK V DYL +++ SPNK K Y+ GK W +P+HPNY A +ATK
Sbjct: 337 LVPNMDPEQVEKLVTDYLEKVFAELGSPNKLKVYMGHGGKPWVADPDHPNYKAGRKATKR 396
Query: 542 VYNVEPDLTREGGSIPITLTFE 563
V+ VEPDLTREGGSIPITLTF+
Sbjct: 397 VFGVEPDLTREGGSIPITLTFQ 418
|
Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466 |
| >gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 7e-48
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
+ I + A +DLHSGL+GG+V + L ++ L + +G+I IP Y DV PL E
Sbjct: 184 AYLEITVRGADRDLHSGLYGGAVPNPIHALARLLASLHDEDGRITIPGFYDDVRPLSAEE 243
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
+ + FD E F + L L W P+L ++GI G ++G G KTVIP
Sbjct: 244 RAAWAALPFDEEAFLAELGVSALAGEAGYTTLERLWARPTLEVNGIWGGYTGEGSKTVIP 303
Query: 472 GKVVGKFSIRIVPNQTPQ----CVEKYVLDYLNELWKARNSPN-KFKAYLLDSGKSWRTN 526
+ K S+R+VP+Q P +E +V +A P + L G+ +
Sbjct: 304 AEAHAKISMRLVPDQDPDKILELLEAHV--------RAHTPPGVTVEVTRLHGGRPYLVP 355
Query: 527 PEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
P+HP AA RA + + P REGGSIPI F+
Sbjct: 356 PDHPALQAARRALEEAFGKPPVFIREGGSIPIVGLFK 392
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437 |
| >gnl|CDD|193552 cd05677, M20_dipept_like_DUG2_type, M20 Defective in Utilization of Glutathione-type peptidases containing WD repeats | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 7e-43
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 12/203 (5%)
Query: 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQF 414
I + DLHSG+ GG++ E DLI ++G+L +P+G+ILIP Y V+P+ + EE
Sbjct: 193 TISVSSDEPDLHSGVDGGALREPTADLILLLGKLQDPDGRILIPGFYDPVKPITEEEEAR 252
Query: 415 YEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKV 474
+ I A+ T L+++WR PSL++H + SGPG TVIP +
Sbjct: 253 FRDI------ASIALIPLPTTVDS----LIAKWRKPSLTIHSVN--VSGPGNSTVIPRRA 300
Query: 475 VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVA 534
SIR+VP+Q + +++ + DYL E + SPN +L+ + W +P++P +
Sbjct: 301 SASVSIRLVPDQDLETIKQDLKDYLRECFAELKSPNHLDIEVLNEAEPWLGDPDNPAFQT 360
Query: 535 AARATKYVYNVEPDLTREGGSIP 557
A + VEP REGGSIP
Sbjct: 361 LREAVTDAWGVEPLYIREGGSIP 383
|
Peptidase M20 family, Defective in Utilization of Glutathione (DUG2) subfamily. DUG2-type proteins are metallopeptidases containing WD repeats at the N-terminus. DUG2 proteins are involved in the alternative pathway of glutathione (GSH) degradation. GSH, the major low-molecular-weight thiol compound in most eukaryotic cells, is normally degraded through the gamma-glutamyl cycle initiated by gamma-glutamyl transpeptidase. However, a novel pathway for the degradation of GSH has been characterized; it requires the participation of three genes identified in Saccharomyces cerevisiae as "defective in utilization of glutathione" genes including DUG1, DUG2, and DUG3. DUG1 encodes a probable di- or tri-peptidase identified as M20 metallopeptidase, DUG2 gene encodes a protein with a metallopeptidase domain and a large N-terminal WD40 repeat region, while DUG3 encodes a protein with a glutamine amidotransferase domain. Although dipeptides and tripeptides with a normal peptide bond, such as cys-gly or glu-cys-gly, can be hydrolyzed by the DUG1 protein, the presence of an unusual peptide bond, like in GSH, requires the participation of the DUG2 and DUG3 proteins as well. These three proteins form a GSH degradosomal complex. Length = 434 |
| >gnl|CDD|220112 pfam09110, HAND, HAND | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 6e-41
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 9/108 (8%)
Query: 805 AVDAYFKEALRTSEPKA---PKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYK 861
+VD Y+K+ L T KA PKAPR PKQ VQD QFFPPRL E+ ++E Y++K +GYK
Sbjct: 1 SVDNYYKDVLNTGGRKASKKPKAPRAPKQVNVQDHQFFPPRLKELQEKEQLYYKKKIGYK 60
Query: 862 VPKN------PELGSDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
VP + E + +K EQ+KID +EPLTEEE EK+ LL +
Sbjct: 61 VPLDDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
|
The HAND domain adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface formed by these three helices and runs perpendicular to them. The domain confers DNA and nucleosome binding properties to the protein. Length = 109 |
| >gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 9e-41
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 18/215 (8%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
V + + +HSG+FGG+ +A+T L+ ++ L + +G++ +P +Y L
Sbjct: 184 ANVTVTVRTLDHAVHSGMFGGAAPDALTALVRLLATLHDEDGRVAVPGLY---SDLPWEG 240
Query: 412 EQFYEKIDFDTEDFRT---AIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468
+ E E+FR +D +L A + W P+L++ GI+ A G
Sbjct: 241 VDYPE------EEFRAEAGVLDGVEL--AGTGSIADRLWAKPALTVIGID-APPVAGASN 291
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPE 528
+P K S+R+VP Q P+ ++ + +L K D+G+ +R + +
Sbjct: 292 AVPPSARAKLSLRLVPGQDPEEAQEALEAHLE---AHAPWGAKVTVTREDAGEPFRADTD 348
Query: 529 HPNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
P Y AA A + VEP L GGSIP+ +
Sbjct: 349 GPAYQAARAALATAWGVEPVLIGSGGSIPLISDLQ 383
|
Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 5e-34
Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 17/180 (9%)
Query: 729 ITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKI-- 786
ITDEDID I+ + E T EL+ K ++ E +++ F +D +Y F+ ED +++ K+
Sbjct: 655 ITDEDIDRIIAKGEEATAELDAKMKKFTEDAIK-FKMDDTA-ELYDFDDEDDKDENKLDF 712
Query: 787 --VPIGHWIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFF-PPRL 843
+ +WI+PPKRERK NY+ YFK+A+R P PK PR P+ P + DFQFF RL
Sbjct: 713 KKIVSDNWIDPPKRERKRNYSESEYFKQAMRQGAPAKPKEPRIPRMPQLHDFQFFNVQRL 772
Query: 844 FEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
E+ ++E V Y + + + T E + + +PLT EE EKE+LL +
Sbjct: 773 TELYEKE-------VRYLMQAHQKGQLKDTIDVAEPE---EPGDPLTAEEQEEKEQLLEE 822
|
Length = 1033 |
| >gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 2e-32
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
A+ I + A DLHSGL+GG+V A+ L+ ++ L + +G + + Y V PL E
Sbjct: 200 AALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEE 259
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
+ + + FD E + + +L + L W P+L L+G+ G F G G KTVIP
Sbjct: 260 REEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQGEGTKTVIP 319
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN-KFKAYLLDSGKSWRTNPEHP 530
+ K + R+VP+Q PQ +LD + +A + D G ++ +HP
Sbjct: 320 AEAHAKITCRLVPDQDPQ----EILDLIEAHLQAHTPAGVRVTIRRFDKGPAFVAPIDHP 375
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTF 562
AAARA + VY E TR GGSIP+ TF
Sbjct: 376 AIQAAARAYEAVYGTEAAFTRMGGSIPVVETF 407
|
Length = 456 |
| >gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-27
Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 308 NTEPFVLDF-ERRKA---LWRRGALVMMKRP--VLGLASAIESISANQEKCAVNIKIECA 361
N E F+ + KA + L RP VLG+ + V + +
Sbjct: 142 NLEDFIEKNKNKLKADSVIMEGAGLDPKGRPQIVLGVKGLL----------YVELVLRTG 191
Query: 362 SKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFD 421
+KDLHS V DL+ ++ LV+ G++LIP Y DV L + E + +K D D
Sbjct: 192 TKDLHS-SNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDID 250
Query: 422 TEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIR 481
E+ R A+ +L +D+ ++ + P+ ++ G ++G G KT++P + K R
Sbjct: 251 VEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYTGKGSKTIVPSRAFAKLDFR 310
Query: 482 IVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSG--KSWRTNPEHPNYVAAARAT 539
+VPNQ P + + + +L F ++ G RT+ A +
Sbjct: 311 LVPNQDPYKIFELLKKHL--------QKVGFNGEIIVHGFEYPVRTSVNSKVVKAMIESA 362
Query: 540 KYVYNVEP 547
K VY EP
Sbjct: 363 KRVYGTEP 370
|
Length = 436 |
| >gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
V + ++ AS DLHS V L+ + L + G+ILIP Y DV P + E
Sbjct: 180 LYVELSVKGASADLHSSY-AAVVDNPAWRLVQALASLRDEGGRILIPGFYDDVRPPTEEE 238
Query: 412 EQFYEKIDFDTEDFRTA--IDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469
++ +K+ FD E + A + P L L + P+ +++G+ ++G G KT+
Sbjct: 239 KELIDKLPFDEEALKKAFGLKRP-LDGLTGRDALEALVFEPTCNINGLYSGYTGEGSKTI 297
Query: 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH 529
+P + K R+VP+Q P+ V + +L+ +N + + L RT+ +
Sbjct: 298 LPAEATAKLDFRLVPDQDPEEVLDLLRAHLD-----KNGFSDIEVTYLLGEPPARTDLDA 352
Query: 530 PNYVAAARATKYVYNVEPDL 549
P AA K VY +P +
Sbjct: 353 PLVQAALDTAKKVYGTDPVV 372
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 430 |
| >gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 4e-21
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 356 IKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFY 415
+ I A +DLHSGLFGG+ + L I+ L + G++ +P Y VE L +
Sbjct: 212 VTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQW 271
Query: 416 EKIDFDTEDFRTAID--HPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGK 473
+ + F E F + P K ++ VL W P+ ++GI G ++G G KTVIP +
Sbjct: 272 KALGFTAEAFLGPVGLSIPAGEK-GRS-VLEQIWSRPTCEINGIWGGYTGEGFKTVIPAE 329
Query: 474 VVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN---KFKAYLLDSGKSWRTNPEHP 530
K S R+V Q P + + Y+ +AR + +F + + + P
Sbjct: 330 ASAKVSFRLVGGQDPAKIREAFRAYV----RARLPADCSVEFHDH--GGSPAIALPYDSP 383
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPI 558
AA A + L GGSIPI
Sbjct: 384 ALAAAKAALSDEWGKPAVLIGSGGSIPI 411
|
Length = 464 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-19
Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
EA NLGN+Y + G EALE Y A+ L PD D Y NLAAA G E+A++
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE----- 55
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
Y KA+E PD A A+ NLG + G+ A+ +EKA+ LDPN
Sbjct: 56 ------DYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 7e-19
Identities = 39/91 (42%), Positives = 51/91 (56%)
Query: 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136
EA NLGN+Y + G EALE Y A+ L PD D Y NLAAA G E+A++ Y A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 137 LQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
L+ +PD +LG LG+ +EA + Y
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 103
LL L +++++ D++ + A++ +P A+AY NL Y + G+ +EALE+Y A+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 104 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
L PD Y NL A G E+A++AY AL+ +P+
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-14
Identities = 69/287 (24%), Positives = 115/287 (40%), Gaps = 40/287 (13%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL LA +Y A + + +NT + L+ + ++ + + + K
Sbjct: 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
Q+P A + G++Y + A++ YR A++ P I L AL+A+G+ +AV
Sbjct: 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAV 756
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ L+ +P+ +R+ L L A D+A K+
Sbjct: 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA----------------------IKHYQ 794
Query: 191 TENIKPVTMKVQ--NAIVCN-----YGGRK-PTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
T +K NA+V N Y K P LE A A+K P + LG
Sbjct: 795 T------VVKKAPDNAVVLNNLAWLYLELKDPRALEYA---ERALKLAPNIPAILDTLGW 845
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
+ E+G+ AL R AV + P+ +LA AL+A G +A +
Sbjct: 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-14
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 31/226 (13%)
Query: 354 VNIKIECASKDLHSGLFGGSV-HEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412
+ + + A LHSG +G + A L ++ + + +G++LIP Y D PL + E+
Sbjct: 205 ITLTVYGAKVPLHSGHYGNYAPNPAFR-LARLLASMKDDDGRVLIPGYY-DGIPLSEEEK 262
Query: 413 QFYEKIDFDTEDFRTAIDHPKLTKADKT----QVLMSRWRYPSLSLHGIEGAFSGPGGKT 468
+ + D E R L + +K Q + +YPSL++ G++ ++G +T
Sbjct: 263 KALAAVPDDEESLR---KRLGLAQTEKVGRNYQEAL---QYPSLNIRGLQSGWTGDKART 316
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL--------------NELWKARNSPNKFKA 514
+IP + IR+VP P + + ++ E P
Sbjct: 317 IIPSTATAEIDIRLVPETDPDRLLDLLKKHIEAQGYHVVDGEPTAEER---LAHPKIATF 373
Query: 515 YLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTRE-GGSIPIT 559
S ++RT+ + P A + EP R GGS+PI+
Sbjct: 374 TRTGSYNAFRTDLDSPIGKWLRAALTKAFGEEPIQIRTMGGSVPIS 419
|
Peptidase M20 family, unknown dipeptidase-like subfamily 1 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 466 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-13
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
D++ + A++ +P A+AY NL Y + G+ +EALE+Y A+ L PD Y N
Sbjct: 14 GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN 73
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPS 651
L A G E+A++AY AL+ +P+
Sbjct: 74 LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-13
Identities = 64/330 (19%), Positives = 114/330 (34%), Gaps = 58/330 (17%)
Query: 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81
G + A + ++ L LL + +K+A + A + +P A A +
Sbjct: 343 GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFID------------------------------ 111
LG +G EA+ + A +L P+
Sbjct: 403 LGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462
Query: 112 ----GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ L A + GD+ +A +A+ AL PD + ++L + G D+A +
Sbjct: 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRF 522
Query: 168 --CVRSDLGNL--LKALGRLDEAKN--------------LHTENIKPVTMKVQNAIVCNY 209
+ D NL + AL L L+ + I+P Q +
Sbjct: 523 EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582
Query: 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 269
+ L A A +P EA+ LG G L +A+ +++ + L+PD
Sbjct: 583 LKKALAILNEA---ADAAPDSP---EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636
Query: 270 GYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ LA A + +A+ + AL+ P
Sbjct: 637 ALLLLADAYAVMKNYAKAITSLKRALELKP 666
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-13
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A++ +P A+AY NL Y + G+ +EALE+Y A+ L PD Y NL A G E
Sbjct: 26 ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85
Query: 286 QAVQAYVTALQYNP 299
+A++AY AL+ +P
Sbjct: 86 EALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-12
Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 45/300 (15%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LA + Q G+ + A + ++ + N +L L+ ++ + +++ + A +
Sbjct: 502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
NP E L Y +GQL++AL A PD + ++ L A +AAGD+ +AV
Sbjct: 562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621
Query: 131 QAYVTALQYNPD----------LYCVRSDLGNLLKALGR-LDEAKDLYCVRSDLGNLLKA 179
++ L PD Y V + + +L R L+ D + L LL A
Sbjct: 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
R + AK + L+ KQ+P A +
Sbjct: 682 AKRTESAKKIAKS------------------------LQ---------KQHPKAALGFEL 708
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G++Y + A++ YR A++ P I L AL+A+G+ +AV+ L+ +P
Sbjct: 709 EGDLYLRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-12
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM-EQAVQAY 133
AEA NLGN + G EA+E Y A+ L PD + Y NLA A + G E+A++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 134 VTALQYNP 141
AL+ +P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-12
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM-EQAVQAY 291
AEA NLGN + G EA+E Y A+ L PD + Y NLA A + G E+A++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 292 VTALQYNP 299
AL+ +P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-12
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM-EQAVQAY 642
AEA NLGN + G EA+E Y A+ L PD + Y NLA A + G E+A++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 643 VTALQYNP 650
AL+ +P
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-12
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+NL GD ++A++ Y KA+E PD A A+ NL + G+
Sbjct: 3 LLNLGNLYYKLGDYDEALE-----------YYEKALELDPDNADAYYNLAAAYYKLGKYE 51
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ +EKA+ LDP+ AY NLG + ++ A
Sbjct: 52 EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-12
Identities = 31/65 (47%), Positives = 39/65 (60%)
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
EA NLGN+Y + G EALE Y A+ L PD D Y NLAAA G E+A++ Y A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 295 LQYNP 299
L+ +P
Sbjct: 61 LELDP 65
|
Length = 100 |
| >gnl|CDD|236127 PRK07907, PRK07907, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 32/208 (15%)
Query: 365 LHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTED 424
+HSG FGG+ +A+T L+ ++ L + +G + + G + + +D+D E
Sbjct: 214 VHSGQFGGAAPDALTALVRLLATLHDEDGNVAVD---------GLDATEPWLGVDYDEER 264
Query: 425 FRTA---IDHPKLTKADKTQVLMSRWRYPSLSLHGI-----EGAFSGPGGKTVIPGKVVG 476
FR +D +L + W P++++ GI GA + +P
Sbjct: 265 FRADAGVLDGVELIGTGSVADRL--WAKPAITVIGIDAPPVAGASN------ALPPSARA 316
Query: 477 KFSIRIVPNQTPQCVEKYVLDYL--NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVA 534
+ S+R+ P Q + ++ +L + W A D+G+ + + P Y A
Sbjct: 317 RLSLRVAPGQDAAEAQDALVAHLEAHAPWGAH-----VTVERGDAGQPFAADASGPAYDA 371
Query: 535 AARATKYVYNVEPDLTREGGSIPITLTF 562
A A + + +P GGSIP
Sbjct: 372 ARAAMREAWGKDPVDMGMGGSIPFIAEL 399
|
Length = 449 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-11
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 54/244 (22%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++++P AEA LG +Y G A + R A+ L LA A + G +
Sbjct: 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107
Query: 128 QAVQAYVTALQYNPD-----LYCVRSDLGNLLKALGRLDEAKDLYC-----------VRS 171
Q + + D L +R G LG+L+ A+ Y +
Sbjct: 108 QVL-DELPGKTLLDDEGAAELLALR---GLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
L L A R DEA+ L E + +P
Sbjct: 164 GLAQLALAENRFDEARALIDE---------------------------------VLTADP 190
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
+A G++ G ++ AL YR A+ L+P+ I + LA L+ AG+ E+A + +
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKH 249
Query: 292 VTAL 295
AL
Sbjct: 250 ADAL 253
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 74/325 (22%), Positives = 127/325 (39%), Gaps = 46/325 (14%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
+A LG+G LELA + YE A + + L L+ + + D++
Sbjct: 133 LAYLGLGQLELAQK-----SYEQALA-------IDPRSLYAKLGLAQLALAENRFDEARA 180
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
+ +P +A G++ G ++ AL YR A+ L+P+ I + LA L+ A
Sbjct: 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA 240
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL-----GRLDEAKDLY--CVRSD---- 172
G+ E+A + L+ P+ S L + LKAL ++A++ ++S
Sbjct: 241 GEFEEAEKHADALLKKAPN-----SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
Query: 173 ------------LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA 220
LGNL +A L++ + + + + TL
Sbjct: 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP- 354
Query: 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
A+ +P A S LG Y G ++A E A L P+ L + ++
Sbjct: 355 -----ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409
Query: 281 AGDMEQAVQAYVTALQYNPLLKKED 305
GD +A+ TA Q +P L + D
Sbjct: 410 QGDPSEAIADLETAAQLDPELGRAD 434
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 22/210 (10%)
Query: 503 WKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562
A P+ A LL + NY A + K ++PD T +
Sbjct: 627 LLALQ-PDSALALLLLADAYAVMK----NYAKAITSLKRALELKPDNTE---AQIGLAQL 678
Query: 563 ECRKLDKSAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
+ KQ+P A + G++Y + A++ YR A++ P
Sbjct: 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS-SQ 737
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
I L AL+A+G+ +AV+ +LK T P+ AV + L ++ AQ +
Sbjct: 738 NAIKLHRALLASGNTAEAVKTLEA--------WLK---THPNDAVLRTALAELYLAQKDY 786
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
AI H++ V P+ NL + E
Sbjct: 787 DKAIKHYQTVVKKAPDNAVVLNNLAWLYLE 816
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-09
Identities = 69/317 (21%), Positives = 125/317 (39%), Gaps = 29/317 (9%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS 61
N A+ +G+ +L+ GD A + + LLL + + + DK+
Sbjct: 396 NAAARTQLGISKLS-----QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450
Query: 62 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121
+ K+ P A ++ LG +Y +G L +A E + A+ ++PDF NLA +
Sbjct: 451 LAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510
Query: 122 AAGDMEQAVQAYVTALQYNP----------DLYCVR---SDLGNLLKALGRLD---EAKD 165
G+ + A+Q + L +P LY + L+ L+
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570
Query: 166 LYCVRSDL--GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
L + L G L KAL L+EA + ++ + M + + + ++ +
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL--- 627
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ P A A L + Y +A+ + + A+ LKPD + I LA L+AA
Sbjct: 628 ---LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684
Query: 284 MEQAVQAYVTALQYNPL 300
E A + + + +P
Sbjct: 685 TESAKKIAKSLQKQHPK 701
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
+ AE + G Y GQL+ A ++Y A+ + P + + LA +A ++A
Sbjct: 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
L +P A G + + G I LA+ + KA++L PN +
Sbjct: 181 LIDEVLTADP-----------GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV 229
Query: 701 YINLGNVLKEARIFDRA 717
+ L +L EA F+ A
Sbjct: 230 LLALATILIEAGEFEEA 246
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-09
Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 30/194 (15%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+ D++ + +P +A G++ G ++ AL YR A+ L+P+ I +
Sbjct: 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPS----CYLKAIE--TRPDFAVAWSNL-------- 670
LA L+ AG+ E+A + L+ P+ YLKA+ + ++ A L
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292
Query: 671 ---------GCVFNAQGEIWLAIHHFEKAVSLDPNFLDA-------YINLGNVLKEARIF 714
G G + A + + + PN A + LG V +
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352
Query: 715 DRANTLFYVSSYFM 728
A L +
Sbjct: 353 SPALGLDPDDPAAL 366
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (138), Expect = 7e-09
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 35/243 (14%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAG 124
L + N LA L + G+L+EALE A+ L P+ + +NL L A G
Sbjct: 50 LELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109
Query: 125 DMEQAVQAYVTALQYNPDLYCVRS--------DLGNLLKALGRLDEAKDLYCVRSDLGNL 176
E+A++ AL +PD + +LG+ +AL ++A +L ++L
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
L ALG L EA + E ++ AEA
Sbjct: 170 LLALGALLEALGRYEEALE-------------------------LLEKALKLNPDDDAEA 204
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
NLG +Y + G+ +EALE Y A+ L PD + NLA L+ G E+A++A AL+
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264
Query: 297 YNP 299
+P
Sbjct: 265 LDP 267
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 58/281 (20%), Positives = 104/281 (37%), Gaps = 21/281 (7%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+L LA + G+ E A + L L+ + +L K+ A
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
P EA+ LG G L +A+ +++ + L+PD + LA A + +A+
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKA 179
+ AL+ PD + L LL A R + AK + G+L
Sbjct: 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715
Query: 180 LGRLDEAKNLHTENIK-----PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
A + + +K +K+ A++ + G E+ +K +P A
Sbjct: 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS--GNTA---EAVKTLEAWLKTHPNDA 770
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 275
+ L +Y + +A+++Y+ V+ PD NLA
Sbjct: 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 21/221 (9%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A+ L Y E+G L+ A EN A+ PD Y+ LA G++E+A ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
AL NP+ V ++ G L G+ ++A + +A+ L+ + +
Sbjct: 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQA---------MQQFEQAI-----EDPLYPQPAR 136
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
+ NA +C + ++ + T A++ +P E+ L +Y RGQ ++A
Sbjct: 137 SLE----NAGLCAL--KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ + + L + A A Q Y LQ
Sbjct: 191 YLERYQQTYNQTAES-LWLGIRIARALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 15/140 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A+ L Y E+G L+ A EN A+ PD Y+ LA G++E+A ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---LDAY 701
AL N P+ +N G QG+ A+ FE+A+ DP + +
Sbjct: 91 ALTLN-----------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSL 138
Query: 702 INLGNVLKEARIFDRANTLF 721
N G +A FD+A
Sbjct: 139 ENAGLCALKAGDFDKAEKYL 158
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (133), Expect = 3e-08
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
Query: 5 AQLGIGLLELAHREYQAGDYESAERHCMQ-LWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
L LL L G YE A + L + LL ++ +++
Sbjct: 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE 151
Query: 64 FSTLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAA 119
A++ +P LAEA LG + + G+ +EALE A++L PD + +NL
Sbjct: 152 LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL 211
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
+ G E+A++ Y AL+ +PD +L LL LGR +EA + +L L
Sbjct: 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYN 271
Query: 180 LGRL 183
LG
Sbjct: 272 LGLA 275
|
Length = 291 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P A+ + Y++ G+ A E+YR A+ L P+ D N A L A G E
Sbjct: 61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+Q + AL +P+ + NLG G+ A + ++A+ LDP
Sbjct: 121 EAMQQFERALA-DPAYGEPSD--------TLENLGLCALKAGQFDQAEEYLKRALELDPQ 171
Query: 697 FLDAYINLGNVLKEARIFDRANTLF 721
F A + L + +A + A
Sbjct: 172 FPPALLELARLHYKAGDYAPARLYL 196
|
Length = 250 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
NL AL GD ++A++ Y KA+E PD A A+ NL + G+ +
Sbjct: 6 LKNLGNALFKLGDYDEAIE-----------AYEKALELDPDNAEAYYNLALAYLKLGKDY 54
Query: 682 -LAIHHFEKAVSLDP 695
A+ EKA+ LDP
Sbjct: 55 EEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------PDFIDGYINLAAALVAAG 124
+P LA A +NL V + G EALE A+ L P+ NLA +A G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 125 DMEQAVQAYVTALQ 138
D ++A++ AL
Sbjct: 61 DYDEALEYLEKALA 74
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------PDFIDGYINLAAALVAAG 282
+P LA A +NL V + G EALE A+ L P+ NLA +A G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 283 DMEQAVQAYVTALQ 296
D ++A++ AL
Sbjct: 61 DYDEALEYLEKALA 74
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-08
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------PDFIDGYINLAAALVAAG 633
+P LA A +NL V + G EALE A+ L P+ NLA +A G
Sbjct: 1 HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60
Query: 634 DMEQAVQAYVTALQ 647
D ++A++ AL
Sbjct: 61 DYDEALEYLEKALA 74
|
Length = 78 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-08
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 10/153 (6%)
Query: 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL 74
A + Y AG Y+ A + L + +N L L I + K ++ A+ +P
Sbjct: 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN 372
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 134
NL + G+ QEA+ + P+ +G+ LA A G+ +A+ A
Sbjct: 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432
Query: 135 TALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
G L +A+ L A
Sbjct: 433 EGYALA----------GRLEQAIIFLMRASQQV 455
|
Length = 484 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 58/280 (20%), Positives = 101/280 (36%), Gaps = 23/280 (8%)
Query: 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHFSTLAIKQNPLLAEAY 79
GDY +AE+ + VL LL+ + K + + + AE
Sbjct: 69 LGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELL 128
Query: 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139
+ G Y GQL+ A ++Y A+ + P + + LA +A ++A L
Sbjct: 129 ALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199
+P G+LL +LG ++ A Y +A L NI +
Sbjct: 189 DPGNVDALLLKGDLLLSLGNIELALAAY----------------RKAIALRPNNIAVLLA 232
Query: 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 259
I ++ L N LA L V ++ ++A E +
Sbjct: 233 LATILIEAGEFEEAEKHADAL----LKKAPNSPLAHYLKAL--VDFQKKNYEDARETLQD 286
Query: 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
A++ P+++ + A+ G++EQA Q L+Y P
Sbjct: 287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P AY L Y++ G+L++A +++R A+ L P+ D N L G E
Sbjct: 57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDF---AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
QA+Q + +AIE P + A + N G G+ A + +A+ +
Sbjct: 117 QAMQQ-----------FEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164
Query: 694 DPNFLDAYINL 704
DP ++ + L
Sbjct: 165 DPQRPESLLEL 175
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A NLG ++ G+ A+ ++EKA+ LDP+ DAY NL + ++ A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEA 53
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA-AALVAAGD 634
L ++ P LAEA NLG + + G+ +EALE A+ L PD LA AL GD
Sbjct: 86 LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD 145
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
E+A++ Y AL+ +P + A A LG + A G A+ EKA+ L+
Sbjct: 146 YEEALELYEKALELDPELN--------ELAEALLALGALLEALGRYEEALELLEKALKLN 197
Query: 695 PN-FLDAYINLGNVLKEARIFDRA 717
P+ +A +NLG + + ++ A
Sbjct: 198 PDDDAEALLNLGLLYLKLGKYEEA 221
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 30/203 (14%)
Query: 562 FECRKLDKSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619
R ++ + L A + NP E L Y +GQL++AL A PD
Sbjct: 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601
Query: 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+ ++ L A +AAGD+ +AV S + K + +PD A+A L +
Sbjct: 602 EAWLMLGRAQLAAGDLNKAV-----------SSFKKLLALQPDSALALLLLADAYAVMKN 650
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739
AI ++A+ L P+ +A I L +L A+ + A + +
Sbjct: 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA-----------------K 693
Query: 740 RCEAKTEELNKKFEQLGESSLRD 762
+ + + FE G+ LR
Sbjct: 694 SLQKQHPKAALGFELEGDLYLRQ 716
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 13/191 (6%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLL--LSSIHFQCRKLDKSAHFSTLAI 69
+ + + L N L + L++ + D S +
Sbjct: 34 AKATGAPESSLAMRQTQGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSA 93
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
P E + G G EA+ R A RL P + + L AAL G ++A
Sbjct: 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA 153
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLK 178
+AY AL+ P+ + ++LG L G L++A+ L VR +L ++
Sbjct: 154 RRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213
Query: 179 ALGRLDEAKNL 189
G EA+++
Sbjct: 214 LQGDFREAEDI 224
|
Length = 257 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHA 102
L L + F+ D++ A++ +P AEAY NL Y + G +EALE+ A
Sbjct: 5 ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64
Query: 103 VRLKP 107
+ L P
Sbjct: 65 LELDP 69
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (115), Expect = 4e-06
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP---DFIDGYINLAAALVAA 632
LA+ +P LAEA LG E G +EALE Y A+ L P + + + L A L A
Sbjct: 122 LALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G E+A++ AL+ NP D A A NLG ++ G+ A+ ++EKA+
Sbjct: 181 GRYEEALELLEKALKLNPD----------DDAEALLNLGLLYLKLGKYEEALEYYEKALE 230
Query: 693 LDPNFLDAYINLGNVLKEARIFDRA 717
LDP+ +A NL +L E ++ A
Sbjct: 231 LDPDNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
A+A NLGN Y + G+ EALE Y A+ L P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
A+A NLGN Y + G+ EALE Y A+ L P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
A+A NLGN Y + G+ EALE Y A+ L P+
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
PD NLA L GD ++A++ AL+ + E P+ A A +NL ++
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALEL----ARELGEDHPETARALNNLARLYL 57
Query: 676 AQGEIWLAIHHFEKAVSLDPN 696
A G+ A+ + EKA++L
Sbjct: 58 ALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 56/154 (36%)
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172
+NL GD ++A++ Y AL+ +PD D Y +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--------------------NADAYY---N 39
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
L LG+ +EA + + A++ +P
Sbjct: 40 LAAAYYKLGKYEEALEDYEK---------------------------------ALELDPD 66
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
A+AY NLG Y + G+ +EALE Y A+ L P+
Sbjct: 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (113), Expect = 9e-06
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 15/187 (8%)
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP---LLAEA 587
Y A + ++PD + + +E +++ A++ +P LAEA
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169
Query: 588 YSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAAGDMEQAVQAYVTAL 646
LG + + G+ +EALE A++L PD + +NL + G E+A++
Sbjct: 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE------ 223
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
Y KA+E PD A A NL + G A+ EKA+ LDP+ + + L
Sbjct: 224 -----YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLL 278
Query: 707 VLKEARI 713
+L EA
Sbjct: 279 LLAEALE 285
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+K+A + A + +P A A + LG +G EA+ + A +L P+ +
Sbjct: 377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR-PDFAVAWSNLGCVFNAQGEIWLA 683
L + + +G ++A+ A K +E + PD A + LG ++ +G++ A
Sbjct: 437 LILSYLRSGQFDKALAA------------AKKLEKKQPDNASLHNLLGAIYLGKGDLAKA 484
Query: 684 IHHFEKAVSLDPNFLDAYINLGNV-LKEARIFD 715
FEKA+S++P+F A NL + ++E D
Sbjct: 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
AEA NLGN Y + G EALE Y A+ L P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
AEA NLGN Y + G EALE Y A+ L P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
AEA NLGN Y + G EALE Y A+ L P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKP 616
F+ D++ A++ +P AEAY NL Y + G +EALE+ A+ L P
Sbjct: 14 FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 61/266 (22%), Positives = 105/266 (39%), Gaps = 34/266 (12%)
Query: 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISA-NQEKCAVNIKIECA-S 362
DGW+ +PF + ++ RGA MK G+A+AI ++ A + N +E A
Sbjct: 87 DGWSVDPFKP-VVKDGRIYGRGA-SDMKG---GIAAAIAALEALAEAGVPPNGPVEAAFV 141
Query: 363 KDLHSGLFGGSVHEAMTDLIYIMGQLV---EPNGK--ILIPH---IYKDVEPLGDTE--- 411
D SG G+ + + + I V EP+G I I H ++ +V G
Sbjct: 142 PDEESGGETGTGY--LVEEGGIRPDYVIIAEPSGLDNIWIGHRGIVWGEVRVKGKQAHGS 199
Query: 412 -----EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWR--YPSLSLHGIEGAFSGP 464
+EK + + A+ + K++ R P+++L G G
Sbjct: 200 TPWLGINAFEKASVIALELQEAL--KPRLSSRKSKYEYEDERTANPTVTLGGEAE---GT 254
Query: 465 GGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWR 524
G ++PG R++P + + V K ++D L + ++F+ L +
Sbjct: 255 GKTNIVPGYFRFSIDRRLIPEENLEEVRKEIVDLLERAEEGI--KHRFEVKSLMIVSAEF 312
Query: 525 TNPEHPNYVAAARATKYVYNVEPDLT 550
T P+ A A + V VEP T
Sbjct: 313 TPPDSSVVEALREAIREVLGVEPRKT 338
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 34/250 (13%)
Query: 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 103
+L L + +L+ + A+ +P A L + + EA +
Sbjct: 127 LLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186
Query: 104 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
P +D + L++ G++E A+ AY A+ P+ V L +L G +EA
Sbjct: 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
Query: 164 -KDLYCVR-----SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
K + S L + LKAL +D K ++A TL
Sbjct: 247 EKHADALLKKAPNSPLAHYLKAL--VDFQKK-----------NYEDAR---------ETL 284
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ A+K P A G + G L++A + ++ P+ LA+
Sbjct: 285 QD------ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338
Query: 278 LVAAGDMEQA 287
+ G +++A
Sbjct: 339 QLRLGRVDEA 348
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 27/224 (12%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A+A L Y ++G +A +N A+ P + ++ A G+ + A ++Y
Sbjct: 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
AL P+ V ++ G L A GR +E A+ + + A
Sbjct: 95 ALSLAPNNGDVLNNYGAFLCAQGRPEE----------------AMQQFERALADPAYGEP 138
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA-- 253
T+ +N +C + E + A++ +P A L ++ + G A
Sbjct: 139 SDTL--ENLGLCALKAGQFDQAE--EYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194
Query: 254 -LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
LE Y+ + + + I +A L GD A Q Y LQ
Sbjct: 195 YLERYQQRGGAQAESLLLGIRIAKRL---GD-RAAAQRYQAQLQ 234
|
Length = 250 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A A NLG + G+ A+ ++EKA+ L+PN
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 35/130 (26%)
Query: 599 GQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYN---PSC 652
G+ EALENY A++L+ D D YI N+ + G+ ++A++ Y AL+ N PS
Sbjct: 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108
Query: 653 YLKAI-------------ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
L I D A A F+ E W ++A+ L PN
Sbjct: 109 -LNNIAVIYHKRGEKAEEAGDQDEAEAL------FDKAAEYW------KQAIRLAPN--- 152
Query: 700 AYINLGNVLK 709
YI N LK
Sbjct: 153 NYIEAQNWLK 162
|
Length = 172 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 9e-05
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
A A NLG G+ AI +EKA+ LDP+ +AY NL +
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLK 49
|
Length = 69 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 55/253 (21%), Positives = 92/253 (36%), Gaps = 42/253 (16%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----------Y--- 113
A++ NP +EA LG Y ++G A+ + A+ L P + Y
Sbjct: 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDLY--CVR 170
I A + A ++ QA + Y A Q + D Y V LG++ A A+ Y +R
Sbjct: 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLG-LGDVAMARKDYAAAERYYQQALR 413
Query: 171 SDLGN--LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
D GN ++ L L ++ K I +L ++ ++
Sbjct: 414 MDPGNTNAVRGLANLYRQQS---------PEKALAFI---------ASLSASQRRSIDDI 455
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN--LAAALVAAGDMEQ 286
+ L + + + +G+ +A E R + L P ++ LA L AG Q
Sbjct: 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQ 513
Query: 287 AVQAYVTALQYNP 299
A Q P
Sbjct: 514 ADALMRRLAQQKP 526
|
Length = 1157 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A+ L Y E+G L+ A EN A+ PD Y+ LA G++E+A ++
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRR 90
Query: 294 ALQYNP 299
AL NP
Sbjct: 91 ALTLNP 96
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 43/150 (28%)
Query: 354 VNIKIECASKDLHSG-LFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412
+ +++ K H+ + I + +L+E G +
Sbjct: 198 LWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFD----------- 246
Query: 413 QFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPG 472
L L L G + +G VIPG
Sbjct: 247 -----------------GPLGLN--------------VGLILAGPGASVNGGDKVNVIPG 275
Query: 473 KVVGKFSIRIVPNQTPQCVEKYVLDYLNEL 502
+ IR++P + V + + L +
Sbjct: 276 EAEATVDIRLLPGEDLDDVLEELEAELRAI 305
|
Length = 409 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A A NLG + G+ A+ ++EKA+ LDPN
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 64/297 (21%), Positives = 110/297 (37%), Gaps = 35/297 (11%)
Query: 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK-SAH 63
A LG+G + +A DY +AER+ Q R + NT + L+++ ++ + +K A
Sbjct: 387 AVLGLGDVAMAR-----KDYAAAERYYQQALRMDPGNTNAVRGLANL-YRQQSPEKALAF 440
Query: 64 FSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115
++L+ Q L + + + +G+ +A E R + L P ++
Sbjct: 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLT 498
Query: 116 --LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
LA L AG QA Q P+ G L R A
Sbjct: 499 YRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA---------- 548
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
L L L A+ NI+ + ++Q+ V R + + A L ++Q P
Sbjct: 549 ---LAHLNTLPRAQ--WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL-LRQQPPS 602
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290
L + ++RG A Y+ + +P D + L +A GD+ A
Sbjct: 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659
|
Length = 1157 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
AEA NLG Y + G +EALE Y A+ L P+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
AEA NLG Y + G +EALE Y A+ L P+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
AEA NLG Y + G +EALE Y A+ L P+
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 28/230 (12%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
K A A + G +G+ EAL + ++ L P YI A+ + GD ++A
Sbjct: 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384
Query: 130 VQAYVTALQYN---PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
+ + AL+ N PD+Y R+ L + +K G +A Y ++
Sbjct: 385 EEDFDKALKLNSEDPDIYYHRAQL-HFIK--GEFAQAGKDY----------------QKS 425
Query: 187 KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
+L + I +Q + G +++ A F K P + Y+ G + +
Sbjct: 426 IDLDPDFIFS---HIQLGVTQYKEGSIASSM--ATFRR-CKKNFPEAPDVYNYYGELLLD 479
Query: 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ + EA+E + A+ L+ + Y+N+ + A + Q Q ++ A
Sbjct: 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 90 GQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
G+ EALENY A++L+ D D YI N+ + G+ ++A++ Y AL+ NP
Sbjct: 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108
Query: 147 RSDLGNLLKALGR-------LDEAKDLY 167
+++ + G DEA+ L+
Sbjct: 109 LNNIAVIYHKRGEKAEEAGDQDEAEALF 136
|
Length = 172 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ +P AY L Y++ G+L++A +++R A+ L P+ D N L G E
Sbjct: 57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYE 116
Query: 128 QAVQAYVTAL--QYNPDLYCVRSDLGNLLKALGRLDEA 163
QA+Q + A+ P + G G D+A
Sbjct: 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
A AY LG +Y + G +EA E Y A+ L P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
A AY LG +Y + G +EA E Y A+ L P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
A AY LG +Y + G +EA E Y A+ L P+
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 8e-04
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKP 265
A++ +P AEAY NL Y + G +EALE+ A+ L P
Sbjct: 27 EKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 9e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
A+ + PL AEA LG +G+L EA R A+ PD
Sbjct: 23 ALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 9e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
A+ + PL AEA LG +G+L EA R A+ PD
Sbjct: 23 ALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 9e-04
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617
A+ + PL AEA LG +G+L EA R A+ PD
Sbjct: 23 ALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPD 63
|
Length = 65 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAL 96
L L+ + + D++ A++ +P A A +NL +Y G EAL
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66
Query: 97 ENYRHAVRLKPD 108
E A+ L+
Sbjct: 67 EYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A NP E G++ E + +EA+E + A+ L P+ +NLA AL+ G +
Sbjct: 335 AQPDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+A++ N YL P+ W L + G
Sbjct: 392 EAIR------ILNR--YLFND---PEDPNGWDLLAQAYAELGNR 424
|
Length = 484 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 248 GQLQEALENYRHAVRLKPDFID-GYI--NLAAALVAAGDMEQAVQAYVTALQYNP 299
G+ EALENY A++L+ D D YI N+ + G+ ++A++ Y AL+ NP
Sbjct: 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103
|
Length = 172 |
| >gnl|CDD|219515 pfam07687, M20_dimer, Peptidase dimerisation domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 447 WRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNEL 502
+ +L++ GIEG + + VIP + KF IR++P + + + K + + L +
Sbjct: 51 FPRTTLNITGIEGGTA----RNVIPAEAEAKFDIRLLPGEDLEELLKEIEEILEKE 102
|
This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the M20 family of peptidases. This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 107 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
++L +L+ LG DEA L + LE A +
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEK-----------------------ALELAR---ELGE 40
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
+P A A +NL +Y G EALE A+ L+
Sbjct: 41 DHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K A A + G +G+ EAL + ++ L P YI A+ + GD ++A
Sbjct: 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ + AL+ N PD + L + +GE A ++K++ LDP+F+
Sbjct: 385 EEDFDKALKLNSE--------DPDIYYHRAQLHFI---KGEFAQAGKDYQKSIDLDPDFI 433
Query: 699 DAYINLGNVLKEARIFDRANTLF 721
++I LG + + F
Sbjct: 434 FSHIQLGVTQYKEGSIASSMATF 456
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/61 (26%), Positives = 23/61 (37%)
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141
L G EAL A+ P + + L AL+ G + +A AL +P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 142 D 142
D
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|193557 cd05682, M20_dipept_like_5, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 44/228 (19%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVE-----PNGKIL-------IP- 398
++ ++ + +HSG G V + I+ QL++ G+IL IP
Sbjct: 194 LGGDLTVQVLDEGVHSGDASGIVPSSFR----ILRQLLDRIEDPETGEILPDELHCEIPA 249
Query: 399 HIYKD----VEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSR-WRYPSLS 453
H Y+ E LG+ +++ F + + D ++L++R WR P+LS
Sbjct: 250 HRYEQAKKAAEILGEP---VFDRFPF--------LSGVRPVTTDPVELLLNRTWR-PALS 297
Query: 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN--K 511
+ G +G S V+ + K S+R+ P E L +L + P K
Sbjct: 298 VTGADGLPSVATAGNVLRPETTLKLSLRLPPT---VDAEA-ASAALKKLLTT-DPPYGAK 352
Query: 512 FKAYLLDSGKSWRTNPEHPNYVAAA--RATKYVYNVEPDLTREGGSIP 557
+G W P ++A A +A++ + P EGGSIP
Sbjct: 353 VTFEPDGAGSGWNAPALAP-WLAKALNKASQDFFGKPPAYMGEGGSIP 399
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 451 |
| >gnl|CDD|176974 CHL00033, ycf3, photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 27/127 (21%)
Query: 598 RGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656
G+ EAL+NY A+RL+ D D YI L+ + E + AL+Y Y +A
Sbjct: 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-----HTKALEY----YFQA 98
Query: 657 IETRPDFAVAWSNLGCVFNAQGE------------IWL--AIHHFEKAVSLDPNFLDAYI 702
+E P A +N+ + + +GE W A ++++A++L P YI
Sbjct: 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG---NYI 155
Query: 703 NLGNVLK 709
N LK
Sbjct: 156 EAQNWLK 162
|
Length = 168 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALE 97
A++ +P AEAY NL + GQ EAL+
Sbjct: 5 ALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
A++ +P AEAY NL + GQ EAL+
Sbjct: 5 ALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALE 606
A++ +P AEAY NL + GQ EAL+
Sbjct: 5 ALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K +P A + L +Y + +A+++Y+ V+ PD NLA + D
Sbjct: 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-- 821
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
AL+Y +A++ P+ LG + +GE A+ KAV++ P
Sbjct: 822 ------ALEYA----ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA 871
Query: 699 DAYINLGNVLKEARIFDRANTL 720
+L L A
Sbjct: 872 AIRYHLALALLATGRKAEARKE 893
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 1/153 (0%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L +G+ A + + N+ + L+ ++ + DK+ +K+ P
Sbjct: 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAP 801
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A +NL +Y E ALE A++L P+ L LV G+ ++A+
Sbjct: 802 DNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLL 860
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
A+ P+ +R L L A GR EA+
Sbjct: 861 RKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617
P A A +NL +Y G EALE A+ L+
Sbjct: 43 PETARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 42/211 (19%), Positives = 63/211 (29%), Gaps = 45/211 (21%)
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
Q Q A AV P+ + LA AL GD + ++ + P +
Sbjct: 45 AMRQTQGAAAALGAAVLRNPEDLSIA-KLATALYLRGDADSSLAVLQKSAIAYPKDRELL 103
Query: 148 SDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKP 196
+ G G EA + + LG L LGR DEA+ + + ++
Sbjct: 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE- 162
Query: 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256
LA + +NLG RG L++A
Sbjct: 163 ----------------------------LAPNE----PSIANNLGMSLLLRGDLEDAETL 190
Query: 257 YRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
A NLA + GD +A
Sbjct: 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREA 221
|
Length = 257 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A GN +A++ Y A+ KPD + Y N AA A GD E+ V+
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTA 185
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEA 163
AL+ +PD + N LG+ +A
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADA 213
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
L G EAL A+ P + + L AL+ G + +A AL
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALA 59
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647
L G EAL A+ P + + L AL+ G + +A AL
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALA 59
|
Length = 65 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A NP E G++ E + +EA+E + A+ L P+ +NLA AL+ G +
Sbjct: 335 AQPDNPYYLEL---AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391
Query: 286 QAVQAYVTALQYNPLLKKE----DGWNT 309
+A++ N L + +GW+
Sbjct: 392 EAIR------ILNRYLFNDPEDPNGWDL 413
|
Length = 484 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 20/52 (38%), Positives = 24/52 (46%)
Query: 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
LA A + AGD ++A+ A AL P LG L GRL EA L
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALL 54
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
LA A + AGD ++A+ A AL P A A LG QG + A
Sbjct: 3 LARAALRAGDYDEALAALEAALARYP-----------LAAEALLLLGEALLRQGRLAEAA 51
Query: 685 HHFEKAVSLDPN 696
A++ DP+
Sbjct: 52 ALLRAALAADPD 63
|
Length = 65 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| KOG4626|consensus | 966 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG2002|consensus | 1018 | 100.0 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG2002|consensus | 1018 | 100.0 | ||
| PF09110 | 113 | HAND: HAND; InterPro: IPR015194 Nucleosome remodel | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 100.0 | |
| KOG0547|consensus | 606 | 99.98 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.98 | |
| KOG2076|consensus | 895 | 99.97 | ||
| KOG0547|consensus | 606 | 99.97 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| KOG0548|consensus | 539 | 99.96 | ||
| KOG1173|consensus | 611 | 99.95 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.95 | |
| KOG2003|consensus | 840 | 99.95 | ||
| KOG0495|consensus | 913 | 99.95 | ||
| KOG1155|consensus | 559 | 99.95 | ||
| KOG0548|consensus | 539 | 99.94 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1155|consensus | 559 | 99.94 | ||
| KOG1126|consensus | 638 | 99.94 | ||
| KOG1173|consensus | 611 | 99.93 | ||
| KOG1126|consensus | 638 | 99.93 | ||
| KOG2076|consensus | 895 | 99.93 | ||
| KOG2003|consensus | 840 | 99.92 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG0624|consensus | 504 | 99.92 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.91 | |
| KOG1156|consensus | 700 | 99.91 | ||
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| KOG1127|consensus | 1238 | 99.91 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 99.9 | |
| KOG4162|consensus | 799 | 99.9 | ||
| KOG0624|consensus | 504 | 99.9 | ||
| KOG1127|consensus | 1238 | 99.89 | ||
| KOG4162|consensus | 799 | 99.88 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.88 | |
| KOG1174|consensus | 564 | 99.87 | ||
| KOG1174|consensus | 564 | 99.86 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.86 | |
| KOG0495|consensus | 913 | 99.86 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.85 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.85 | |
| KOG0385|consensus | 971 | 99.84 | ||
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.82 | |
| KOG1915|consensus | 677 | 99.81 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG0550|consensus | 486 | 99.81 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.8 | |
| KOG1125|consensus | 579 | 99.8 | ||
| KOG1125|consensus | 579 | 99.8 | ||
| KOG2376|consensus | 652 | 99.79 | ||
| KOG1840|consensus | 508 | 99.79 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.79 | |
| KOG1129|consensus | 478 | 99.79 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| KOG1915|consensus | 677 | 99.78 | ||
| KOG1129|consensus | 478 | 99.78 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.77 | |
| KOG0550|consensus | 486 | 99.77 | ||
| KOG1156|consensus | 700 | 99.77 | ||
| KOG1840|consensus | 508 | 99.75 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG3785|consensus | 557 | 99.72 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.72 | |
| KOG2376|consensus | 652 | 99.69 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| KOG1130|consensus | 639 | 99.68 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| KOG2047|consensus | 835 | 99.63 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.63 | |
| KOG3785|consensus | 557 | 99.63 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.61 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.59 | |
| KOG4340|consensus | 459 | 99.58 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.55 | |
| KOG2047|consensus | 835 | 99.54 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.49 | |
| KOG1130|consensus | 639 | 99.48 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.48 | |
| KOG0553|consensus | 304 | 99.47 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.44 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.43 | |
| KOG3060|consensus | 289 | 99.43 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.41 | |
| KOG3060|consensus | 289 | 99.41 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.39 | |
| KOG4340|consensus | 459 | 99.39 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.37 | |
| KOG1128|consensus | 777 | 99.37 | ||
| KOG1128|consensus | 777 | 99.37 | ||
| KOG0553|consensus | 304 | 99.36 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.29 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.22 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.2 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.2 | |
| KOG2053|consensus | 932 | 99.19 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.16 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.06 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.04 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.03 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.01 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.0 | |
| KOG0543|consensus | 397 | 98.99 | ||
| KOG3617|consensus | 1416 | 98.99 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.95 | |
| KOG0543|consensus | 397 | 98.94 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.93 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.92 | |
| KOG3617|consensus | 1416 | 98.92 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.91 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.9 | |
| KOG1941|consensus | 518 | 98.86 | ||
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.85 | |
| KOG4648|consensus | 536 | 98.85 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.83 | |
| KOG4234|consensus | 271 | 98.83 | ||
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.79 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.79 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.78 | |
| KOG2471|consensus | 696 | 98.75 | ||
| KOG1941|consensus | 518 | 98.74 | ||
| KOG4234|consensus | 271 | 98.73 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.7 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.69 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.67 | |
| KOG2053|consensus | 932 | 98.67 | ||
| KOG3616|consensus | 1636 | 98.66 | ||
| KOG1070|consensus | 1710 | 98.63 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.63 | |
| KOG3081|consensus | 299 | 98.63 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.62 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.62 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.62 | |
| KOG3081|consensus | 299 | 98.61 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.59 | |
| KOG4648|consensus | 536 | 98.59 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.58 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.56 | |
| KOG2300|consensus | 629 | 98.55 | ||
| KOG3616|consensus | 1636 | 98.54 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.53 | |
| KOG4555|consensus | 175 | 98.53 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.52 | |
| KOG4555|consensus | 175 | 98.51 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.49 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.48 | |
| KOG1070|consensus | 1710 | 98.47 | ||
| KOG2471|consensus | 696 | 98.46 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.46 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.45 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.36 | |
| KOG2796|consensus | 366 | 98.32 | ||
| KOG2300|consensus | 629 | 98.26 | ||
| KOG1914|consensus | 656 | 98.24 | ||
| KOG2796|consensus | 366 | 98.2 | ||
| KOG4507|consensus | 886 | 98.2 | ||
| KOG1586|consensus | 288 | 98.18 | ||
| KOG0985|consensus | 1666 | 98.16 | ||
| KOG2276|consensus | 473 | 98.15 | ||
| KOG4642|consensus | 284 | 98.1 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.06 | |
| KOG4642|consensus | 284 | 98.03 | ||
| KOG1914|consensus | 656 | 98.01 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.99 | |
| KOG4507|consensus | 886 | 97.97 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.97 | |
| KOG2610|consensus | 491 | 97.95 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.93 | |
| KOG0545|consensus | 329 | 97.92 | ||
| KOG2610|consensus | 491 | 97.89 | ||
| KOG0545|consensus | 329 | 97.89 | ||
| KOG1585|consensus | 308 | 97.86 | ||
| KOG0376|consensus | 476 | 97.85 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.84 | |
| KOG1586|consensus | 288 | 97.82 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.81 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.77 | |
| KOG0376|consensus | 476 | 97.74 | ||
| KOG1585|consensus | 308 | 97.72 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.61 | |
| KOG0551|consensus | 390 | 97.5 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.48 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.47 | |
| KOG0530|consensus | 318 | 97.46 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| KOG0551|consensus | 390 | 97.44 | ||
| KOG1550|consensus | 552 | 97.39 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.36 | |
| KOG1308|consensus | 377 | 97.32 | ||
| KOG1258|consensus | 577 | 97.31 | ||
| KOG0985|consensus | 1666 | 97.3 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.25 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.23 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.21 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.18 | |
| KOG1308|consensus | 377 | 97.14 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.13 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.04 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.98 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.96 | |
| KOG1550|consensus | 552 | 96.93 | ||
| KOG0890|consensus | 2382 | 96.87 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.86 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.73 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.72 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.69 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.68 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.61 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.55 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.53 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.48 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.42 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.42 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.42 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.38 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.36 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.33 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.28 | |
| KOG3824|consensus | 472 | 96.14 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.12 | |
| KOG0530|consensus | 318 | 96.11 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.02 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.0 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.98 | |
| KOG3824|consensus | 472 | 95.95 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.95 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.94 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.85 | |
| KOG2396|consensus | 568 | 95.74 | ||
| KOG1258|consensus | 577 | 95.67 | ||
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 95.67 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.64 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.59 | |
| KOG3783|consensus | 546 | 95.58 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.55 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.51 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.48 | |
| KOG0890|consensus | 2382 | 95.4 | ||
| PRK10941 | 269 | hypothetical protein; Provisional | 95.27 | |
| KOG2041|consensus | 1189 | 95.18 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.99 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.98 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.87 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.79 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.73 | |
| KOG1839|consensus | 1236 | 94.72 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 94.66 | |
| KOG1464|consensus | 440 | 94.65 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.53 | |
| KOG1310|consensus | 758 | 94.34 | ||
| KOG2041|consensus | 1189 | 94.32 | ||
| KOG3364|consensus | 149 | 94.09 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.05 | |
| KOG3364|consensus | 149 | 94.03 | ||
| KOG1310|consensus | 758 | 93.93 | ||
| KOG1839|consensus | 1236 | 93.88 | ||
| KOG4814|consensus | 872 | 93.86 | ||
| KOG2396|consensus | 568 | 93.79 | ||
| KOG1463|consensus | 411 | 93.62 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.56 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.53 | |
| KOG4814|consensus | 872 | 93.4 | ||
| KOG3807|consensus | 556 | 93.39 | ||
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.32 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.19 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.15 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.44 | |
| KOG1464|consensus | 440 | 92.42 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.3 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 92.05 | |
| KOG2422|consensus | 665 | 91.55 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.51 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.45 | |
| KOG1538|consensus | 1081 | 91.2 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.94 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 90.61 | |
| KOG0529|consensus | 421 | 90.34 | ||
| KOG0546|consensus | 372 | 90.32 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.05 | |
| KOG1538|consensus | 1081 | 89.99 | ||
| KOG3807|consensus | 556 | 89.97 | ||
| KOG2581|consensus | 493 | 89.86 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 89.66 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.58 | |
| KOG0529|consensus | 421 | 89.52 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.95 | |
| KOG2561|consensus | 568 | 88.47 | ||
| KOG2422|consensus | 665 | 88.43 | ||
| KOG3783|consensus | 546 | 88.4 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.39 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 88.39 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 87.88 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 87.88 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 87.66 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 87.6 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 87.23 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.14 | |
| KOG0128|consensus | 881 | 86.33 | ||
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 86.26 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.22 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.91 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.21 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.22 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 82.76 | |
| KOG0546|consensus | 372 | 81.74 | ||
| KOG2581|consensus | 493 | 81.02 | ||
| KOG4279|consensus | 1226 | 81.0 | ||
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.4 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.23 | |
| KOG0276|consensus | 794 | 80.1 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-53 Score=423.30 Aligned_cols=548 Identities=38% Similarity=0.564 Sum_probs=462.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
-....+.+|...++.|+|.+|++++..+...+|.+.+.+..++.++++..+++.....-..+++.+|..++++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
...|++++|+..|+.+++++|+..++|+++|.++...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
| .+++...|..+.+|.+||.++..
T Consensus 207 Y--------------------------------------------------------lkAi~~qp~fAiawsnLg~~f~~ 230 (966)
T KOG4626|consen 207 Y--------------------------------------------------------LKAIETQPCFAIAWSNLGCVFNA 230 (966)
T ss_pred H--------------------------------------------------------HHHHhhCCceeeeehhcchHHhh
Confidence 8 69999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhh
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG 326 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~ 326 (904)
+|+...|+..|+++++++|..+++|++||.+|...+.+++|+..|.+++.+.|++
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~------------------------- 285 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH------------------------- 285 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-------------------------
Confidence 9999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCc
Q psy17306 327 ALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEP 406 (904)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 406 (904)
+.++.+++.+|..+|.
T Consensus 286 ----------------------------------------------------A~a~gNla~iYyeqG~------------ 301 (966)
T KOG4626|consen 286 ----------------------------------------------------AVAHGNLACIYYEQGL------------ 301 (966)
T ss_pred ----------------------------------------------------hhhccceEEEEecccc------------
Confidence 4444555555555544
Q ss_pred ccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCC
Q psy17306 407 LGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPN 485 (904)
Q Consensus 407 ~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (904)
++.||..|++++++ |.++++ |.++
T Consensus 302 -----------ldlAI~~Ykral~~~P~F~~A-----------y~Nl--------------------------------- 326 (966)
T KOG4626|consen 302 -----------LDLAIDTYKRALELQPNFPDA-----------YNNL--------------------------------- 326 (966)
T ss_pred -----------HHHHHHHHHHHHhcCCCchHH-----------HhHH---------------------------------
Confidence 89999999999999 999887 4433
Q ss_pred CcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHH
Q psy17306 486 QTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECR 565 (904)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (904)
...+.+.+...++...+.+++...|++++.. +++|.++..+|.+++|..+|.+
T Consensus 327 -----------------anALkd~G~V~ea~~cYnkaL~l~p~hadam----------~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 327 -----------------ANALKDKGSVTEAVDCYNKALRLCPNHADAM----------NNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred -----------------HHHHHhccchHHHHHHHHHHHHhCCccHHHH----------HHHHHHHHHhccchHHHHHHHH
Confidence 2233444556666677788899999999988 9999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 566 ~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
+++..|..+.++.+||.+|.++|++++|+.+|+.++++.|..++++.|+|..|-.+|+.+.|++
T Consensus 380 -----------al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q----- 443 (966)
T KOG4626|consen 380 -----------ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ----- 443 (966)
T ss_pred -----------HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 646 l~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
++.+++..+|..++++.+||.+|...|+..+|+..|+.+|+++|+.++++.|++.++.-..+|.+=-+.+.+..
T Consensus 444 ------~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~ 517 (966)
T KOG4626|consen 444 ------CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLV 517 (966)
T ss_pred ------HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999877766665444444333
Q ss_pred cccCC-----------h-------hhHHHHHHHHHHHHHH-HHHHHHHcCC---CCCccccccCCCcccccccCchhhhh
Q psy17306 726 YFMIT-----------D-------EDIDVILERCEAKTEE-LNKKFEQLGE---SSLRDFTLDAPTQSVYKFEGEDYREK 783 (904)
Q Consensus 726 ~~~~~-----------~-------~~~~~~l~~~~~~~~~-~~~~~~~l~~---~~~~~~~~~~~~~~~y~~~g~~~~~~ 783 (904)
++..+ + -+-...++... +-+. --.+...++. .++.+++.. ...-..+|.+.||-
T Consensus 518 sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~-k~a~~c~~~~~~~~k~pyth~~~l~~~-~~rlrIGYvSsDFg-- 593 (966)
T KOG4626|consen 518 SIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAA-KHANLCLDKVHVLGKPPYTHPDNLKVK-EGRLRIGYVSSDFG-- 593 (966)
T ss_pred HHHHHHHhhhcCCccCcccccccccchHHHHHHHH-HHhhhhHHHHHhccCCCCCChhhCCCC-cCceEEEeeccccc--
Confidence 22111 0 00011111111 1111 1122233443 344554432 13347799999994
Q ss_pred hccCCCccccCCchhhh-hhhcchhHH
Q psy17306 784 QKIVPIGHWIEPPKRER-KANYAVDAY 809 (904)
Q Consensus 784 ~~~~~~~~w~~~~~~e~-~~~~~~~~~ 809 (904)
.||..+.+.....-| +..|+|-||
T Consensus 594 --nHp~Shlmqsv~gmHdr~kveVfcY 618 (966)
T KOG4626|consen 594 --NHPTSHLMQSVPGMHDRSKVEVFCY 618 (966)
T ss_pred --CCchHHHhccCcCcCCccceEEEEE
Confidence 477777776666655 566776443
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=384.84 Aligned_cols=407 Identities=29% Similarity=0.408 Sum_probs=370.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|+.++++-..|.++...|++++|+..|+.+++..|+..++|..+|.++...|+.+.|..+|..++.++|....+...+|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++..+|+..+|..+|.++++..|..+.+|.++|-++...|+...|+..|+++++++|+..+++++||.+|...+.+++|
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~ 243 (904)
+.+| .+++...|+.+.++.++|.+
T Consensus 272 vs~Y--------------------------------------------------------~rAl~lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 272 VSCY--------------------------------------------------------LRALNLRPNHAVAHGNLACI 295 (966)
T ss_pred HHHH--------------------------------------------------------HHHHhcCCcchhhccceEEE
Confidence 8888 68899999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHH
Q psy17306 244 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW 323 (904)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~ 323 (904)
|+.+|..+-|+..|++++++.|..++++.++|.++...|+..+|..+|.+++.+.|++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h---------------------- 353 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH---------------------- 353 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccc
Q psy17306 324 RRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKD 403 (904)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 403 (904)
+++.++||.++...++
T Consensus 354 -------------------------------------------------------adam~NLgni~~E~~~--------- 369 (966)
T KOG4626|consen 354 -------------------------------------------------------ADAMNNLGNIYREQGK--------- 369 (966)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhcc---------
Confidence 5666777776655554
Q ss_pred cCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcc
Q psy17306 404 VEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRI 482 (904)
Q Consensus 404 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (904)
+++|+..|.++++. |+...+
T Consensus 370 --------------~e~A~~ly~~al~v~p~~aaa--------------------------------------------- 390 (966)
T KOG4626|consen 370 --------------IEEATRLYLKALEVFPEFAAA--------------------------------------------- 390 (966)
T ss_pred --------------chHHHHHHHHHHhhChhhhhh---------------------------------------------
Confidence 78888888888877 554433
Q ss_pred cCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHH
Q psy17306 483 VPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562 (904)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (904)
.+++|.+|.++|++++|+..
T Consensus 391 ------------------------------------------------------------~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 391 ------------------------------------------------------------HNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred ------------------------------------------------------------hhhHHHHHHhcccHHHHHHH
Confidence 48999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 642 (904)
Q Consensus 563 ~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 642 (904)
|+. ++.+.|..++++.++|..|..+|+.+.|+.+|.++|.++|..++++.|||.+|...|+..+|+.
T Consensus 411 Yke-----------alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~-- 477 (966)
T KOG4626|consen 411 YKE-----------ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ-- 477 (966)
T ss_pred HHH-----------HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH--
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.|+.+++++|+.+.++.++..++.-.-++..=-+.+.+..++
T Consensus 478 ---------sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 478 ---------SYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred ---------HHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 888999999999999999999988777666655556666555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=417.71 Aligned_cols=676 Identities=18% Similarity=0.139 Sum_probs=443.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+..+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++...|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++..+...|.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHH-HHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 165 DLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN-AIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 165 ~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
..+. ....+|.++...|++++|+..+.+.+...+..... ..........+...++...+.+++..+|.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (899)
T TIGR02917 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361 (899)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9883 34566888899999999999999876543322211 11222223455667788888899999999
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcc
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPF 312 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 312 (904)
++..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|+...........+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887632111000000
Q ss_pred cccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccC
Q psy17306 313 VLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN 392 (904)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 392 (904)
........+....................++.+....+....++........... .....++.++.++...
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP---------DFFPAAANLARIDIQE 512 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC---------CcHHHHHHHHHHHHHC
Confidence 0000001111111111111111122233333444444444444444433322111 1112233333333222
Q ss_pred CcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 393 GKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
|+ +++|+..|++++.. |....... .++..+...|......
T Consensus 513 g~-----------------------~~~A~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 513 GN-----------------------PDDAIQRFEKVLTIDPKNLRAIL----------------ALAGLYLRTGNEEEAV 553 (899)
T ss_pred CC-----------------------HHHHHHHHHHHHHhCcCcHHHHH----------------HHHHHHHHcCCHHHHH
Confidence 22 55666666666655 44332200 0111221112111111
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh-------------------------------cc
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD-------------------------------SG 520 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-------------------------------~~ 520 (904)
..+.... ...|... .....++..+...++..++...+.. +.
T Consensus 554 ~~~~~~~--~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 554 AWLEKAA--ELNPQEI------EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred HHHHHHH--HhCccch------hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111100 0111100 1112233333333333333333222 22
Q ss_pred cccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC
Q psy17306 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 600 (904)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 600 (904)
+++...|.++... ..+|.++...|++++|+..|++ ++..+|++..++..++.++...|+
T Consensus 626 ~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 626 KLLALQPDSALAL----------LLLADAYAVMKNYAKAITSLKR-----------ALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHhCCCChHHH----------HHHHHHHHHcCCHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHcCC
Confidence 2233334333333 4444555555555555555554 666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh----------------------hHHHhhh
Q psy17306 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS----------------------CYLKAIE 658 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------------~~~~~l~ 658 (904)
+++|+..++.+.+..|.++..+..+|.++...|++++|+..|++++...|+ .+.+.++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666667777777777777777777777776665542 3445555
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+.++++++...+++..+...+
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 6666677777777777777777777777777777777777777777777777776 667777777777666666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q psy17306 739 ERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 739 ~~~~~~~~~~~~~~~~l~~~ 758 (904)
+.+....++++++++.+...
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666555444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=407.03 Aligned_cols=658 Identities=19% Similarity=0.187 Sum_probs=457.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|....+++.+|..++..|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++.+++..|.
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++...|++++|+..|++++..+|+...++..+|.++...|++++|+..+.++++..|++..++..++.++...|++++|.
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence 88888899999999988888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcch--hhHHHHHHhh----------------------
Q psy17306 165 DLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTM--KVQNAIVCNY---------------------- 209 (904)
Q Consensus 165 ~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~---------------------- 209 (904)
..+. .+..++.++...|++++|+..+.+.....+. .....+...+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 429 (899)
T TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc
Confidence 7772 4555677777778888888777775542221 1111111111
Q ss_pred -----------cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 210 -----------GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 210 -----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
........++...+.+.....|.++..+..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 111223334455555556666667777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHh
Q psy17306 279 VAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (904)
...|++++|+..|++++...|.+..........+........+....................+.......+....++..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777777777777765211000000000000000011100000001111111111222222222333333322
Q ss_pred hhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchh
Q psy17306 359 ECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKA 437 (904)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~ 437 (904)
........ +.-...+..+|.++...++ ++.|+..|++++.. |..+..
T Consensus 590 ~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-----------------------~~~A~~~~~~~~~~~~~~~~~ 637 (899)
T TIGR02917 590 LNEAADAA---------PDSPEAWLMLGRAQLAAGD-----------------------LNKAVSSFKKLLALQPDSALA 637 (899)
T ss_pred HHHHHHcC---------CCCHHHHHHHHHHHHHcCC-----------------------HHHHHHHHHHHHHhCCCChHH
Confidence 22211100 0111223333333322222 77788888888776 554433
Q ss_pred hhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHH
Q psy17306 438 DKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517 (904)
Q Consensus 438 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 517 (904)
+ ..++.++...|+...+...+...+ ...|.. ......++.++...++...+...++
T Consensus 638 -----------~-----~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 638 -----------L-----LLLADAYAVMKNYAKAITSLKRAL--ELKPDN------TEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred -----------H-----HHHHHHHHHcCCHHHHHHHHHHHH--hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 111333333333322222222211 112221 1223345556666665555555443
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~ 597 (904)
.+....|.++... ..+|.++...|++++|+..|++ ++...|++ ..+..+|.++..
T Consensus 694 ---~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 694 ---SLQKQHPKAALGF----------ELEGDLYLRQKDYPAAIQAYRK-----------ALKRAPSS-QNAIKLHRALLA 748 (899)
T ss_pred ---HHHhhCcCChHHH----------HHHHHHHHHCCCHHHHHHHHHH-----------HHhhCCCc-hHHHHHHHHHHH
Confidence 4444556665554 7788888899999999999988 88888876 678889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~ 677 (904)
.|++++|+..++++++.+|+++.+++.+|.++...|++++|+. .|.++++.+|+++.++.++|+++...
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-----------~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK-----------HYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 66677778899999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHc
Q psy17306 678 GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 678 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 755 (904)
|+ .+|+..+++++.+.|+++.++..+|.++...|++++|+++|+++++..+.+..+...++.+..+.++..++.+.+
T Consensus 818 ~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 889999999999999999999999999999999999999999999999999999999999999988888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=382.71 Aligned_cols=578 Identities=15% Similarity=0.088 Sum_probs=422.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHH-------
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAY------- 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------- 79 (904)
-.+.|+.++..+...++.+.|.+.+++++..+|++++++..++.++...|+.++|...++++++.+|+++.++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 4566999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred ---------HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 80 ---------SNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 80 ---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..++++++.+|+++.++..
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 566788999999999999999999998887642 2233333445699999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh-------HHHHH----HcCCHHHHHHHHhhcCCCcchhh--H---HH---------
Q psy17306 150 LGNLLKALGRLDEAKDLYCVRSDL-------GNLLK----ALGRLDEAKNLHTENIKPVTMKV--Q---NA--------- 204 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~~~~~~l-------~~~~~----~~g~~~~A~~~~~~~~~~~~~~~--~---~~--------- 204 (904)
+|.++...|++++|+..++..... +..+. ..+....++..+...+...+... . ..
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999543221 11111 11222233333322111111000 0 00
Q ss_pred -------HHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH--------
Q psy17306 205 -------IVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------- 269 (904)
Q Consensus 205 -------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------- 269 (904)
.............+++..+++++..+|+++.++..+|.++...|++++|+.+|+++++.+|++..
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 00001112334445556666666666666666666666666666666666666666666655432
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhh
Q psy17306 270 ------GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIE 343 (904)
Q Consensus 270 ------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (904)
....+|.++...|++++|+..|+++++.+|++
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------------------------------------------ 384 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------------------------------------------ 384 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------------------------------------
Confidence 11233555566666666666666666666655
Q ss_pred hhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHH
Q psy17306 344 SISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTE 423 (904)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 423 (904)
..++..+|.++...|+ +++|+.
T Consensus 385 -----------------------------------~~a~~~Lg~~~~~~g~-----------------------~~eA~~ 406 (1157)
T PRK11447 385 -----------------------------------SYAVLGLGDVAMARKD-----------------------YAAAER 406 (1157)
T ss_pred -----------------------------------HHHHHHHHHHHHHCCC-----------------------HHHHHH
Confidence 2233344444433333 889999
Q ss_pred HHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHH
Q psy17306 424 DFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNEL 502 (904)
Q Consensus 424 ~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 502 (904)
.|++++.. |+.... ...++.+
T Consensus 407 ~y~~aL~~~p~~~~a----------------------------------------------------------~~~L~~l 428 (1157)
T PRK11447 407 YYQQALRMDPGNTNA----------------------------------------------------------VRGLANL 428 (1157)
T ss_pred HHHHHHHhCCCCHHH----------------------------------------------------------HHHHHHH
Confidence 99999988 665543 1223333
Q ss_pred HHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC
Q psy17306 503 WKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP 582 (904)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p 582 (904)
+.. .+.+++..++..+.... +...... ........+..+|..+...|++++|+..|++ ++..+|
T Consensus 429 ~~~-~~~~~A~~~l~~l~~~~---~~~~~~~-~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~-----------Al~~~P 492 (1157)
T PRK11447 429 YRQ-QSPEKALAFIASLSASQ---RRSIDDI-ERSLQNDRLAQQAEALENQGKWAQAAELQRQ-----------RLALDP 492 (1157)
T ss_pred HHh-cCHHHHHHHHHhCCHHH---HHHHHHH-HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCC
Confidence 322 23444444443322111 1000000 0000123457788999999999999999999 999999
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN------------- 649 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 649 (904)
+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|..+...|++++|+..++++....
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999887643211
Q ss_pred ----------------hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 650 ----------------PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 650 ----------------~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
.+.....+..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.+|...|+
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 0112334557899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 714 FDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 714 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
+++|+++|++++...+++......++.+....+++.++.+.+...
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999998888888888999998888888887766544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=361.42 Aligned_cols=565 Identities=14% Similarity=0.046 Sum_probs=413.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------------HHHHHHHHhhcCHHHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVL----------------LLLSSIHFQCRKLDKSAHFSTLA 68 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~la~~~~~~g~~~~A~~~~~~a 68 (904)
|....++...+..+...|++++|...++++++.+|+++.+. +.+|.++...|++++|+..|+++
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44567789999999999999999999999999999987764 56678899999999999999999
Q ss_pred HhcCcccHH-HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH-
Q psy17306 69 IKQNPLLAE-AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV- 146 (904)
Q Consensus 69 l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 146 (904)
+..+|.+.. +......+....|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...+....+
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa 218 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAA 218 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHH
Confidence 999888754 222333344456999999999999999999999999999999999999999999999998765433211
Q ss_pred --HHHH--------------HHHHHHc---CChHHHHHHHH-----------HHHhhHHHHHHcCCHHHHHHHHhhcCCC
Q psy17306 147 --RSDL--------------GNLLKAL---GRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAKNLHTENIKP 196 (904)
Q Consensus 147 --~~~l--------------a~~~~~~---~~~~~A~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 196 (904)
+... ....... .....|...+. ....+|..+...|++++|+..+++++..
T Consensus 219 ~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~ 298 (1157)
T PRK11447 219 QLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA 298 (1157)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1100 0000000 11222323221 1123477888899999999999887764
Q ss_pred cc--hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH--------------HHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17306 197 VT--MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE--------------AYSNLGNVYKERGQLQEALENYRHA 260 (904)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~a 260 (904)
.+ ......+.. ......+..++...+++++..+|++.. ....+|.++...|++++|+..|+++
T Consensus 299 ~P~~~~a~~~Lg~-~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 299 NPKDSEALGALGQ-AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 222223322 223446677888888899998886542 2235588899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhh
Q psy17306 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340 (904)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (904)
+..+|+++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-------------------------------------- 419 (1157)
T PRK11447 378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-------------------------------------- 419 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--------------------------------------
Confidence 999999999999999999999999999999999999999881
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhh
Q psy17306 341 AIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDF 420 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
..+..++.++.. ...++
T Consensus 420 ---------------------------------------~a~~~L~~l~~~------------------------~~~~~ 436 (1157)
T PRK11447 420 ---------------------------------------NAVRGLANLYRQ------------------------QSPEK 436 (1157)
T ss_pred ---------------------------------------HHHHHHHHHHHh------------------------cCHHH
Confidence 011111111100 00344
Q ss_pred hHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 421 DTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 421 A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
|+..++.+... +..... .........+..+
T Consensus 437 A~~~l~~l~~~~~~~~~~-------------------------------------------------~~~~l~~~~~~~~ 467 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDD-------------------------------------------------IERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHhCCHHHHHHHHH-------------------------------------------------HHHHhhhhHHHHH
Confidence 44444432211 000000 0000000112234
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
+..+...++...+ +..+.++++.+|+++.+. ..+|.++...|++++|+..+++ ++.
T Consensus 468 a~~~~~~g~~~eA---~~~~~~Al~~~P~~~~~~----------~~LA~~~~~~G~~~~A~~~l~~-----------al~ 523 (1157)
T PRK11447 468 AEALENQGKWAQA---AELQRQRLALDPGSVWLT----------YRLAQDLRQAGQRSQADALMRR-----------LAQ 523 (1157)
T ss_pred HHHHHHCCCHHHH---HHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHH-----------HHH
Confidence 4445555544444 444566777888887766 8888888899999999999988 788
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HhhCCCcH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHA----------------------------------------VRLKPDFI 619 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------------------------------l~~~p~~~ 619 (904)
.+|+++.+++.+|..+...+++++|+..++++ ++.+|.++
T Consensus 524 ~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~ 603 (1157)
T PRK11447 524 QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPST 603 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCc
Confidence 88888887777777777777777776665542 23478888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.++..+|.++...|++++|+. .|.++++.+|+++.++..+|.++...|++++|++.|+++++..|+++.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~-----------~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARA-----------AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 899999999999999999999 777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCChh------hHHHHHHHHHHHHHHHHHHHHHc
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITDE------DIDVILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~l 755 (904)
++..+|.++...|++++|+++|++++...+++. .+...++......++..+++..+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999998765432 23333455565555555555444
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=326.25 Aligned_cols=579 Identities=17% Similarity=0.197 Sum_probs=378.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL--DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 101 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (904)
+..|..+|..+-.++-.....+...+..+...|+. +.|...|..+++.+|+|..+++..|.+.+..|+|..|+.+|++
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44444455544444433333333333333333332 4555555555555555555555555555555555555555555
Q ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC---hHHHHHHH----------
Q psy17306 102 AVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR---LDEAKDLY---------- 167 (904)
Q Consensus 102 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~---------- 167 (904)
++.++|.. ++..+.+|.|++++|+.+.|+..|+++++++|.++.++..||.+-....+ +..++..+
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n 269 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN 269 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC
Confidence 55555443 33444555555555555555555555555555555555555544443332 22233322
Q ss_pred -HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 168 -CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 168 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
.+...++..++..|+|..+..+...++. .....+..++.++++|++|..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~------------------------------~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIK------------------------------NTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHH------------------------------hhhhhHHHHHHHHHHHHHHHh
Confidence 2344445555555555555555442211 112233446778888888888
Q ss_pred hCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHh
Q psy17306 247 RGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRR 325 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 325 (904)
+|+|++|..+|.+++..+|++ .-.++++|+.++..|+++.|+.+|+++++..|++++ .
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e-----------------t---- 378 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE-----------------T---- 378 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH-----------------H----
Confidence 888888888888888888887 677888888888888888888888888888888832 0
Q ss_pred hhhhcccccccchhhhhhhhhhhh----hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccc
Q psy17306 326 GALVMMKRPVLGLASAIESISANQ----EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIY 401 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 401 (904)
...++.++... ...+.+..+...... ..+...+++..+++++....
T Consensus 379 -------------m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~---------~~~~d~~a~l~laql~e~~d-------- 428 (1018)
T KOG2002|consen 379 -------------MKILGCLYAHSAKKQEKRDKASNVLGKVLE---------QTPVDSEAWLELAQLLEQTD-------- 428 (1018)
T ss_pred -------------HHHHHhHHHhhhhhhHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHhcC--------
Confidence 01111111111 111111111111110 11223444445555443221
Q ss_pred cccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchh
Q psy17306 402 KDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSI 480 (904)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (904)
.-.++..|..++.. -.
T Consensus 429 ----------------~~~sL~~~~~A~d~L~~----------------------------------------------- 445 (1018)
T KOG2002|consen 429 ----------------PWASLDAYGNALDILES----------------------------------------------- 445 (1018)
T ss_pred ----------------hHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 11123444444322 00
Q ss_pred cccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccc--cCCCC---cchHHHHHHHHHHHhhCchhHhhcCC
Q psy17306 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWR--TNPEH---PNYVAAARATKYVYNVEPDLTREGGS 555 (904)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~ 555 (904)
........++..++.+....+..+.+...+..+...+. .+++. +.+ ..-+++|.+....++
T Consensus 446 ------~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l--------t~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 446 ------KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL--------TLKYNLARLLEELHD 511 (1018)
T ss_pred ------cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh--------HHHHHHHHHHHhhhh
Confidence 00012234567888888888998888888877766533 23332 221 234899999999999
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 635 (904)
++.|.+.|.. .+..+|....++..+|......++..+|...++.++..+..++.++..+|.+++...++
T Consensus 512 ~~~A~e~Yk~-----------Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 512 TEVAEEMYKS-----------ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred hhHHHHHHHH-----------HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 9999999999 99999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC------------CCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ------------GEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 636 ~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
..|.+-|+.+++.. . .-+++.++..||+++... +.+++|++.|.++|..+|.|..+-.+
T Consensus 581 ~~a~k~f~~i~~~~-------~--~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANG 651 (1018)
T KOG2002|consen 581 KPAKKKFETILKKT-------S--TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANG 651 (1018)
T ss_pred cccccHHHHHHhhh-------c--cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccc
Confidence 99999666555421 1 115778899999988753 56899999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhh
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYRE 782 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~ 782 (904)
+|.|+...|++.+|+.+|.++.+...+..++..++++|+...+++..+++.+... ++.|. ..++..|..++|+.+..
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~-lkkf~-~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC-LKKFY-KKNRSEVLHYLARAWYE 728 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH-HHHhc-ccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998888999999999999999999999988766 55554 35566799999855544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.56 Aligned_cols=435 Identities=18% Similarity=0.190 Sum_probs=346.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||...|++++|+..++++++++|++..+++.+|.+|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4667889999999999999999999999999996 778999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
..+|++++|+..|..+...++........+..... ...+......+++..|.+...+..++..+... ....+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 279 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRPAG 279 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcchhh
Confidence 99999999999999888776654432222211111 13556667777788888777777676655322 11111111
Q ss_pred H-----------HHHHhhHHHH---HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---
Q psy17306 167 Y-----------CVRSDLGNLL---KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--- 229 (904)
Q Consensus 167 ~-----------~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 229 (904)
+ .....++... ...+.+++|+..|+ +++..
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~---------------------------------~al~~~~~ 326 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE---------------------------------KALDLGKL 326 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH---------------------------------HHHhcCCC
Confidence 1 0111111111 22355666666665 55543
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNT 309 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 309 (904)
.|....++..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|+++++.+|+++
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~------- 399 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP------- 399 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------
Confidence 5777888999999999999999999999999999999999999999999999999999999999998888761
Q ss_pred CcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccc
Q psy17306 310 EPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLV 389 (904)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 389 (904)
T Consensus 400 -------------------------------------------------------------------------------- 399 (615)
T TIGR00990 400 -------------------------------------------------------------------------------- 399 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccc
Q psy17306 390 EPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 469 (904)
T Consensus 400 -------------------------------------------------------------------------------- 399 (615)
T TIGR00990 400 -------------------------------------------------------------------------------- 399 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh
Q psy17306 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL 549 (904)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (904)
.++..+|.+
T Consensus 400 -----------------------------------------------------------------------~~~~~lg~~ 408 (615)
T TIGR00990 400 -----------------------------------------------------------------------DIYYHRAQL 408 (615)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 123677888
Q ss_pred HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy17306 550 TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629 (904)
Q Consensus 550 ~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 629 (904)
+...|++++|+..|++ ++..+|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++
T Consensus 409 ~~~~g~~~~A~~~~~k-----------al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQK-----------SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELL 477 (615)
T ss_pred HHHcCCHHHHHHHHHH-----------HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG-CVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
..+|++++|+..|++++.+.|+.- ....+ ...+.+.+ .++...|++++|+..|++++.++|++..++..+|.++
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~----~~~~~-~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETK----PMYMN-VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccc----ccccc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999999996666665544310 00011 11223333 3444579999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHhhcccCChhhH
Q psy17306 709 KEARIFDRANTLFYVSSYFMITDEDI 734 (904)
Q Consensus 709 ~~~g~~~~A~~~~~~a~~~~~~~~~~ 734 (904)
..+|++++|+.+|++++++..+..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHccCHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999988765553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=323.36 Aligned_cols=598 Identities=14% Similarity=0.047 Sum_probs=411.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|+..|++++|+..++++++.+|.+...+..++.+
T Consensus 43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 3566888999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH----------------------------------------HHHcCCH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAA----------------------------------------LVAAGDM 126 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~----------------------------------------~~~~g~~ 126 (904)
+++++|+..|++++..+|++.+++..++.. |..+|+|
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 999999999999999999987776665554 3344555
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHH--------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLY--------CVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
++|+..+.++++..|.+......++.+|.. +++ +++..++ ..+..++..+...|+.++|...+++.-...
T Consensus 199 ~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 199 SQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 555555555555555555555555555554 244 4444443 133345566666677777766666532211
Q ss_pred ch----hhHHHHHHhhcCC-----CcchHH--------H------------hhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 198 TM----KVQNAIVCNYGGR-----KPTTLE--------S------------AHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 198 ~~----~~~~~~~~~~~~~-----~~~~~~--------a------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
.. ......+...... ...... . ....++.....|.++. ....-......+
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~ 356 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM-LEERYAVSVATR 356 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH-HHHHHhhccccC
Confidence 11 1111111111111 000000 0 0011223334444432 111122223446
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHH-Hhhh
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW-RRGA 327 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~-~~~~ 327 (904)
.+.+|........+..|.+..++..++......|++++|...++.+....++. . + ...+. +.+.
T Consensus 357 ~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--------~----~~~l~~~l~~ 421 (987)
T PRK09782 357 NKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA---R--------L----SQTLMARLAS 421 (987)
T ss_pred chhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc---c--------c----CHHHHHHHHH
Confidence 77777777777777779999999999999999999999999999998763322 0 0 00000 1111
Q ss_pred hhcccccccchhhh---------------hhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH--HHHHHHHhhcccc
Q psy17306 328 LVMMKRPVLGLASA---------------IESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA--MTDLIYIMGQLVE 390 (904)
Q Consensus 328 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lg~~~~ 390 (904)
+............+ .+........+........ ..+. ...+++.+|.++.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-------------~~p~~~~~~a~~~LG~~l~ 488 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG-------------DMSPSYDAAAWNRLAKCYR 488 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc-------------cCCCCCCHHHHHHHHHHHH
Confidence 11111110000000 0000000111111111110 0011 3445555555443
Q ss_pred cCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCccc
Q psy17306 391 PNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469 (904)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 469 (904)
. + +.++|+..|.+++.. |+...
T Consensus 489 ~-~-----------------------~~~eAi~a~~~Al~~~Pd~~~--------------------------------- 511 (987)
T PRK09782 489 D-T-----------------------LPGVALYAWLQAEQRQPDAWQ--------------------------------- 511 (987)
T ss_pred h-C-----------------------CcHHHHHHHHHHHHhCCchHH---------------------------------
Confidence 2 1 156788888887776 43210
Q ss_pred ccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh
Q psy17306 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL 549 (904)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (904)
...++......++.+.+..++. ++....|.+ ..+ ..+|.+
T Consensus 512 --------------------------~L~lA~al~~~Gr~eeAi~~~r---ka~~~~p~~-~a~----------~~la~a 551 (987)
T PRK09782 512 --------------------------HRAVAYQAYQVEDYATALAAWQ---KISLHDMSN-EDL----------LAAANT 551 (987)
T ss_pred --------------------------HHHHHHHHHHCCCHHHHHHHHH---HHhccCCCc-HHH----------HHHHHH
Confidence 1123333445566666665554 344444443 233 677889
Q ss_pred HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy17306 550 TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629 (904)
Q Consensus 550 ~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 629 (904)
+...|++++|+.++++ ++..+|.....+..++......|++++|+..|+++++++|+ +.++.++|.++
T Consensus 552 ll~~Gd~~eA~~~l~q-----------AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 552 AQAAGNGAARDRWLQQ-----------AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred HHHCCCHHHHHHHHHH-----------HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 9999999999999999 99999998888888888778889999999999999999997 89999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.+.|++++|+. .+.+++..+|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 620 ~~lG~~deA~~-----------~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 620 RQRHNVPAAVS-----------DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999 7778888999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 710 EARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 710 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.+|++++|+.+|++++...|+...+....+....+-..+..+++.+...
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888888888788777765443
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=310.44 Aligned_cols=594 Identities=18% Similarity=0.181 Sum_probs=409.0
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDY--ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYK 87 (904)
Q Consensus 11 l~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 87 (904)
++..+..++..|+. +.|...|..+++..|++..+++..|.+.+..|+|..|+.+|.+++.++|.. +.....+|.|+.
T Consensus 131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW 210 (1018)
T ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence 44555556666655 888889999999999999899999999999999999999999998888863 556778888999
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++|+.+.|+..|+++++++|.++.++..||.+-.... .+..++..+.++...+|.+|.++..|+..++..|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 9999999999999999999988888888888876654 4677888888999999999999999999999999998887
Q ss_pred HHH--------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH-H-HHhhcCCCcchHHHhhHHHHHhh
Q psy17306 165 DLY--------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-I-VCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 165 ~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
.+. +.++.+|..+..+|++++|..+|.+++...+...... . +....-...+...+..++++++.
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 776 3577888999999999999998875554333221100 0 01111122333444444555555
Q ss_pred cCchhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 229 QNPLLAEAYSNLGNVYKERG----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
..|++.+....+|.+|...+ ..+.|..+..++++..|.+..+|..++.++....-+. ++.+|.+++..-...
T Consensus 371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~--- 446 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESK--- 446 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHc---
Confidence 55555555555555555443 3445555555555555555555555555554333222 255555554322111
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh-hHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH-EAMTDLIY 383 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 383 (904)
....-....++++.+....+.+..+...+..+..........+.. .......|
T Consensus 447 --------------------------~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 447 --------------------------GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred --------------------------CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 011122333444444444444444444333332221100000000 00123345
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFS 462 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 462 (904)
+++.+....+. .+.|.+.|..++.. |..... |.
T Consensus 501 Nlarl~E~l~~-----------------------~~~A~e~Yk~Ilkehp~YId~-----------yl------------ 534 (1018)
T KOG2002|consen 501 NLARLLEELHD-----------------------TEVAEEMYKSILKEHPGYIDA-----------YL------------ 534 (1018)
T ss_pred HHHHHHHhhhh-----------------------hhHHHHHHHHHHHHCchhHHH-----------HH------------
Confidence 55554433222 67888999999887 776655 11
Q ss_pred CCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHH
Q psy17306 463 GPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYV 542 (904)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (904)
.++.+.. +.....++...+..++..+..+|.++
T Consensus 535 -----------------------------------Rl~~ma~---~k~~~~ea~~~lk~~l~~d~~np~ar--------- 567 (1018)
T KOG2002|consen 535 -----------------------------------RLGCMAR---DKNNLYEASLLLKDALNIDSSNPNAR--------- 567 (1018)
T ss_pred -----------------------------------HhhHHHH---hccCcHHHHHHHHHHHhcccCCcHHH---------
Confidence 1111111 22223344444566777778888877
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH------------cCCHHHHHHHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE------------RGQLQEALENYRH 610 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~------------~g~~~~A~~~~~~ 610 (904)
..+|..+.....+..|-.-|...++. .... .++.+...||+++.. .+.+++|+++|.+
T Consensus 568 -sl~G~~~l~k~~~~~a~k~f~~i~~~--------~~~~-~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 568 -SLLGNLHLKKSEWKPAKKKFETILKK--------TSTK-TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -HHHHHHHHhhhhhcccccHHHHHHhh--------hccC-CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 88999999999999999887772221 1111 467788889998743 4468899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
+|+.+|.+..+-+.+|.++...|++.+|.. .|.++.+.-.+.+.+|.|+|.||..+|+|..|++.|+.+
T Consensus 638 vL~~dpkN~yAANGIgiVLA~kg~~~~A~d-----------IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 638 VLRNDPKNMYAANGIGIVLAEKGRFSEARD-----------IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHhcCcchhhhccchhhhhhhccCchHHHH-----------HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 555554544567789999999999999999999999999
Q ss_pred HhcC--cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 691 VSLD--PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 691 l~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
++.. .+++.++..||.++...|.+.+|.+...+++...|.+..+.++++....++...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 9983 457999999999999999999999999999999999999999988887766443
|
|
| >PF09110 HAND: HAND; InterPro: IPR015194 Nucleosome remodelling is an energy-dependent process that alters histone-DNA interactions within nucleosomes, thereby rendering nucleosomal DNA accessible to regulatory factors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=250.52 Aligned_cols=99 Identities=57% Similarity=0.946 Sum_probs=69.9
Q ss_pred chhHHHHHHHhcCCCCC-----CCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCC--------cc
Q psy17306 805 AVDAYFKEALRTSEPKA-----PKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELG--------SD 871 (904)
Q Consensus 805 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 871 (904)
|||+||++||+++.++. |++|||||++||+|||||||||+||+|||++||+|+||||||+.+..+ .+
T Consensus 1 SVD~YYkdvl~~g~~~~~~~~~pk~Pr~PK~~~~~DfQFfPprL~eL~EkE~~~y~K~i~yk~~~~d~~~~~~~~~~~~~ 80 (113)
T PF09110_consen 1 SVDNYYKDVLRTGGKKPKKQNQPKAPRPPKQPNIQDFQFFPPRLKELQEKEQLYYKKKIGYKVPLDDGKDSYEEEEDEEE 80 (113)
T ss_dssp -HHHHHHHH------SS-------S---TTS--GGGGGS--HHHHHHHHHHHHHHHHHCT----CCCHTTTS--SSSTTC
T ss_pred ChHHHHHHHHccCCCCCccccCCCCCCCCCCCCCCccccCChHHHHHHHHHHHHHHHHhCCCCCcccccccccccccccc
Confidence 79999999999866643 999999999999999999999999999999999999999999997432 44
Q ss_pred hHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 872 ATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
...++++||++||||+||||||+++|++|++|
T Consensus 81 ~e~~~~~eq~~Idna~pLTEEE~~~Ke~Ll~e 112 (113)
T PF09110_consen 81 REAKRKLEQEKIDNAEPLTEEEEAEKEKLLSE 112 (113)
T ss_dssp HHHHHHHHHHHHHT-SSS-HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccccCCCCCHHHHHHHHHHHhc
Confidence 55688999999999999999999999999986
|
The ATPases involved belong to the SWI2/SNF2 subfamily of DEAD/H-helicases, which contain a conserved ATPase domain characterised by seven motifs. Proteins within this family differ with regard to domain organisation, their associated proteins and the remodelling complex in which they reside. The ATPase ISWI is a member of this family. ISWI can be divided into two regions: an N-terminal region that contains the SWI2/SNF2 ATPase domain, and a C-terminal region that is responsible for substrate recognition. The C-terminal region contains 12 alpha-helices and can be divided into three domains and a spacer region: a HAND domain (named because its 4-helical structure resembles an open hand), a SANT domain (c-Myb DNA-binding like), a spacer helix, and a SLIDE domain (SANT-like but with several insertions). This entry represents the HAND domain, which adopts a secondary structure consisting of four alpha helices, three of which (H2, H3, H4) form an L-like configuration. Helix H2 runs antiparallel to helices H3 and H4, packing closely against helix H4, whilst helix H1 reposes in the concave surface formed by these three helices and runs perpendicular to them. This domain confers DNA and nucleosome binding properties to the protein []. ; GO: 0031491 nucleosome binding, 0043044 ATP-dependent chromatin remodeling, 0016585 chromatin remodeling complex; PDB: 1OFC_X 2Y9Y_A 2Y9Z_A 2NOG_A. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=312.92 Aligned_cols=506 Identities=15% Similarity=0.024 Sum_probs=348.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH--
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL-- 82 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 82 (904)
|....+++.++..+...|++++|+..++++++.+|.+...+..++.+ +++++|+..|+++++.+|++..++..+
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 45577789999999999999999999999999999998888888777 899999999999999988865544333
Q ss_pred --------------------------------------HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Q psy17306 83 --------------------------------------GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-A 123 (904)
Q Consensus 83 --------------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 123 (904)
+.+|..+|+|++|+..+.++++.+|.+...+..++.+|.. +
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred HhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Confidence 4556778999999999999999999999999999999998 5
Q ss_pred CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH------------------------------------
Q psy17306 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------------------------------------ 167 (904)
Q Consensus 124 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~------------------------------------ 167 (904)
++ ++++.+++..++ +++.++..++..|...|+.++|...+
T Consensus 231 ~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 231 LD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred CH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 77 888888765333 67889999999999999999999888
Q ss_pred ----------------------------------------------------------------------HHHHhhHHHH
Q psy17306 168 ----------------------------------------------------------------------CVRSDLGNLL 177 (904)
Q Consensus 168 ----------------------------------------------------------------------~~~~~l~~~~ 177 (904)
+....++...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0111223333
Q ss_pred HHcCCHHHHHHHHhhcCCC-cchh----hHHHHHHhhcCCCcchHHHhhHHHHHhhcCch--hHHHHHHHH------HHH
Q psy17306 178 KALGRLDEAKNLHTENIKP-VTMK----VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL--LAEAYSNLG------NVY 244 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg------~~~ 244 (904)
...|++++|..++...... .... ....+...+. .+|. .+.-...+| .-.
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE------------------SHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH------------------hCCcccchHHHHHhccccccchhH
Confidence 4445555555555554431 1000 0000000000 0000 000000000 000
Q ss_pred HHhCCHHH---HHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHH
Q psy17306 245 KERGQLQE---ALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERR 319 (904)
Q Consensus 245 ~~~g~~~~---A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (904)
.-.|+..+ +...+.+++...|. ++.+++.+|.++.. +++.+|+..+.+++...|+..
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~----------------- 510 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW----------------- 510 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----------------
Confidence 11333322 22333333333344 44555555555544 444445555555554444330
Q ss_pred HHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccc
Q psy17306 320 KALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPH 399 (904)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~ 399 (904)
....++..+...|+
T Consensus 511 ------------------------------------------------------~~L~lA~al~~~Gr------------ 524 (987)
T PRK09782 511 ------------------------------------------------------QHRAVAYQAYQVED------------ 524 (987)
T ss_pred ------------------------------------------------------HHHHHHHHHHHCCC------------
Confidence 00011111112222
Q ss_pred cccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccch
Q psy17306 400 IYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFS 479 (904)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (904)
+++|+..|++++..|.....
T Consensus 525 ------------------~eeAi~~~rka~~~~p~~~a------------------------------------------ 544 (987)
T PRK09782 525 ------------------YATALAAWQKISLHDMSNED------------------------------------------ 544 (987)
T ss_pred ------------------HHHHHHHHHHHhccCCCcHH------------------------------------------
Confidence 44444444444433111110
Q ss_pred hcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHH
Q psy17306 480 IRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPIT 559 (904)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 559 (904)
...++.+....++...+..++. +++...|.+.... ..++......|++++|
T Consensus 545 ----------------~~~la~all~~Gd~~eA~~~l~---qAL~l~P~~~~l~----------~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 545 ----------------LLAAANTAQAAGNGAARDRWLQ---QAEQRGLGDNALY----------WWLHAQRYIPGQPELA 595 (987)
T ss_pred ----------------HHHHHHHHHHCCCHHHHHHHHH---HHHhcCCccHHHH----------HHHHHHHHhCCCHHHH
Confidence 0122233333334433333333 2233445443333 3445555567999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy17306 560 LTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639 (904)
Q Consensus 560 ~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 639 (904)
+..|++ ++..+|+ +.++.++|.++...|++++|+..|++++.++|+++.++.++|.++...|++++|+
T Consensus 596 l~~~~~-----------AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 596 LNDLTR-----------SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHH-----------HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999 9999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHH
Q psy17306 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANT 719 (904)
Q Consensus 640 ~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 719 (904)
. .+.++++.+|+++.+++++|.++..+|++++|+.+|+++++++|+++.+....|.+.....+++.|.+
T Consensus 664 ~-----------~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 664 E-----------MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred H-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 9 77788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCChh
Q psy17306 720 LFYVSSYFMITDE 732 (904)
Q Consensus 720 ~~~~a~~~~~~~~ 732 (904)
.+++.....++.-
T Consensus 733 ~~~r~~~~~~~~~ 745 (987)
T PRK09782 733 EVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhhcCccch
Confidence 9999998887543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=312.15 Aligned_cols=429 Identities=15% Similarity=0.127 Sum_probs=331.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+..+..+|..++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..++..+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345778899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
.+|++++|+..|..+...++.+......+...+........+.. .+...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-----------------------~l~~~~~~~~~~~ 262 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKE-----------------------ILETKPENLPSVT 262 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHH-----------------------HHhcCCCCCCCHH
Confidence 99999999999988877765443221111111111000111111 1111100000000
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhh---CCCCHHHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK---ERGQLQEALENYRHAVRL---KPDFIDGYINLA 275 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~la 275 (904)
......... .. ......+......++.....+..+|..+. ..++|++|+..|++++.. .|....++..+|
T Consensus 263 ~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 263 FVGNYLQSF-RP---KPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred HHHHHHHHc-cC---CcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 000000000 00 00001112333444544455555555443 347899999999999986 477788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHH
Q psy17306 276 AALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVN 355 (904)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (904)
.++..+|++++|+..|++++..+|+..
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~----------------------------------------------------- 365 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVT----------------------------------------------------- 365 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH-----------------------------------------------------
Confidence 999999999999999999999988761
Q ss_pred HHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcc
Q psy17306 356 IKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLT 435 (904)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~ 435 (904)
T Consensus 366 -------------------------------------------------------------------------------- 365 (615)
T TIGR00990 366 -------------------------------------------------------------------------------- 365 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHH
Q psy17306 436 KADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAY 515 (904)
Q Consensus 436 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 515 (904)
T Consensus 366 -------------------------------------------------------------------------------- 365 (615)
T TIGR00990 366 -------------------------------------------------------------------------------- 365 (615)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHH
Q psy17306 516 LLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 595 (904)
Q Consensus 516 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~ 595 (904)
..|..+|.++...|++++|+..|++ ++..+|+++.+++.+|.++
T Consensus 366 -------------------------~~~~~la~~~~~~g~~~eA~~~~~~-----------al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 366 -------------------------QSYIKRASMNLELGDPDKAEEDFDK-----------ALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred -------------------------HHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHH
Confidence 1236677788889999999999999 9999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~ 675 (904)
...|++++|+.+|+++++++|++..++.++|.++..+|++++|+. .+.+++...|+++.++..+|.++.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-----------~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA-----------TFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 666677788999999999999999
Q ss_pred hCCCHHHHHHHHHHHHhcCcCcHHHH------HHHHHHH-HHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 676 AQGEIWLAIHHFEKAVSLDPNFLDAY------INLGNVL-KEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 676 ~~g~~~~A~~~~~~al~~~p~~~~a~------~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
.+|++++|+..|+++++++|.+...+ .+.+.++ ...|++++|+.+|++++...|++......++.+....+++
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 99999999999999999998754332 3333333 4479999999999999999998888888999999999999
Q ss_pred HHHHHHcCCC
Q psy17306 749 NKKFEQLGES 758 (904)
Q Consensus 749 ~~~~~~l~~~ 758 (904)
++++..+...
T Consensus 559 ~eAi~~~e~A 568 (615)
T TIGR00990 559 DEALKLFERA 568 (615)
T ss_pred HHHHHHHHHH
Confidence 9998776544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-30 Score=289.78 Aligned_cols=132 Identities=13% Similarity=0.034 Sum_probs=82.1
Q ss_pred hhCchhHhhcCChhH----HHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 544 NVEPDLTREGGSIPI----TLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~----A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
..+|.++...|++++ |+..|++ ++..+|+++.++..+|.++...|++++|+..++++++++|+++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~-----------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~ 318 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRH-----------ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP 318 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHH-----------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 334444445555543 4555555 6666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
.++.++|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~-----------~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASD-----------EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666666666666666666 4444445555555555556666666666666666666666666654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-29 Score=290.13 Aligned_cols=421 Identities=14% Similarity=0.067 Sum_probs=342.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
...-.-..+....|++++|+..+.++...+|..+.++..+|.++...|++++|+..++++++.+|.++.++..+|.++..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455667788999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
.|++++|+..+++++..+|+++. +..+|.++...|++++|+..++++++.+|++..++..++.++...+..++|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999888887771
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
....... ....+..++....+...++......+
T Consensus 175 ~~~~~p~-----------------------------------------------~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 175 DANLTPA-----------------------------------------------EKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred hCCCCHH-----------------------------------------------HHHHHHHHHHHHHHHhhcccccChhH
Confidence 0000000 00111111211222222222222334
Q ss_pred CH---HHHHHHHHHHHhhCCCCHHH-------HHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHH
Q psy17306 249 QL---QEALENYRHAVRLKPDFIDG-------YIN-LAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFE 317 (904)
Q Consensus 249 ~~---~~A~~~~~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 317 (904)
++ ++|+..++.+++..|.++.. ... ++ .+...|++++|+..|+++++..+..|.
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~-------------- 272 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPP-------------- 272 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCH--------------
Confidence 45 78899999988764443322 222 33 345778999999999998876543310
Q ss_pred HHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccc
Q psy17306 318 RRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILI 397 (904)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 397 (904)
T Consensus 273 -------------------------------------------------------------------------------- 272 (765)
T PRK10049 273 -------------------------------------------------------------------------------- 272 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCccccc
Q psy17306 398 PHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGK 477 (904)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (904)
T Consensus 273 -------------------------------------------------------------------------------- 272 (765)
T PRK10049 273 -------------------------------------------------------------------------------- 272 (765)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChh
Q psy17306 478 FSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIP 557 (904)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 557 (904)
+ +...+|.++...|+++
T Consensus 273 ---------------------------------------------------~------------a~~~la~~yl~~g~~e 289 (765)
T PRK10049 273 ---------------------------------------------------W------------AQRWVASAYLKLHQPE 289 (765)
T ss_pred ---------------------------------------------------H------------HHHHHHHHHHhcCCcH
Confidence 0 0022366788899999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------c
Q psy17306 558 ITLTFECRKLDKSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---------------F 618 (904)
Q Consensus 558 ~A~~~~~~~l~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~ 618 (904)
+|+..|++ ++..+|.+ ......++.++...|++++|+..++++....|. .
T Consensus 290 ~A~~~l~~-----------~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 290 KAQSILTE-----------LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHHHH-----------HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 99999999 88877765 456778888899999999999999999998763 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
..++..+|.++...|++++|++ .+.+++...|+++.++..+|.++...|++++|+..++++++++|+++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~-----------~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEM-----------RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 4577899999999999999999 77777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
.+++.+|.++...|++++|...+++++...|++..+...
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999987755543
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-29 Score=245.19 Aligned_cols=189 Identities=21% Similarity=0.206 Sum_probs=156.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
|+..|.+++-.+++++|+.-|++ ++.++|+++.++..++.+.+++++++++...|+.+.+..|+.++.+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~K-----------ai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy 465 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQK-----------AISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVY 465 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH-----------HhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 47778888888999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN-AQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
...|.++..++++++|++.|.+++++.|..-.-.+ ++..+.+-|.+.. -.+++..|+..+++|+++||.+..++
T Consensus 466 ~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v-----~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 466 NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV-----NAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc-----cchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 99999999999999999966666554443111001 3333444443332 24899999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 747 (904)
..||.+..++|+.++|+++|+++.....+..+....+.-++....+
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~aeAAraq 586 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSLAEAARAQ 586 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998877766666555555554433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-29 Score=281.80 Aligned_cols=363 Identities=14% Similarity=0.047 Sum_probs=310.2
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
+..-....+..+...|++++|+..++.++...|.++.++..+|.+....|++++|+..+++++..+|+++.++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34455666777788899999999999999989998888888888888899999999999999999999888888888888
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
...|++++|+..+ .+++..+|+++
T Consensus 121 ~~~g~~~~Ai~~l--------------------------------------------------------~~Al~l~P~~~ 144 (656)
T PRK15174 121 LKSKQYATVADLA--------------------------------------------------------EQAWLAFSGNS 144 (656)
T ss_pred HHcCCHHHHHHHH--------------------------------------------------------HHHHHhCCCcH
Confidence 8888888888877 67888888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVL 314 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 314 (904)
.++..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++++...|....
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------- 212 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------- 212 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch-----------
Confidence 99999999999999999999999999999999888887764 478899999999999998877653300
Q ss_pred cHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCc
Q psy17306 315 DFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGK 394 (904)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 394 (904)
T Consensus 213 -------------------------------------------------------------------------------- 212 (656)
T PRK15174 213 -------------------------------------------------------------------------------- 212 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcc
Q psy17306 395 ILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKV 474 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (904)
T Consensus 213 -------------------------------------------------------------------------------- 212 (656)
T PRK15174 213 -------------------------------------------------------------------------------- 212 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcC
Q psy17306 475 VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554 (904)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 554 (904)
.....++.++...|
T Consensus 213 ------------------------------------------------------------------~~~~~l~~~l~~~g 226 (656)
T PRK15174 213 ------------------------------------------------------------------ESAGLAVDTLCAVG 226 (656)
T ss_pred ------------------------------------------------------------------hHHHHHHHHHHHCC
Confidence 00023345566889
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE----ALENYRHAVRLKPDFIDGYINLAAALV 630 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~lg~~~~ 630 (904)
++++|+..+++ ++..+|+++.+++.+|.++...|++++ |+..|+++++++|+++.++.++|.++.
T Consensus 227 ~~~eA~~~~~~-----------al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 227 KYQEAIQTGES-----------ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI 295 (656)
T ss_pred CHHHHHHHHHH-----------HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999986 899999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy17306 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710 (904)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 710 (904)
..|++++|+. .+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 296 ~~g~~~eA~~-----------~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 296 RTGQNEKAIP-----------LLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 9999999999 67777788999999999999999999999999999999999999999888889999999
Q ss_pred hcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 711 ARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 711 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.|++++|+..|++++...|+... ..+......+.++++..+..
T Consensus 365 ~G~~deA~~~l~~al~~~P~~~~-----~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 365 AGKTSEAESVFEHYIQARASHLP-----QSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred CCCHHHHHHHHHHHHHhChhhch-----hhHHHHHHHHHHHHHhcCCc
Confidence 99999999999999998876432 22223445556666555433
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-25 Score=239.13 Aligned_cols=642 Identities=15% Similarity=0.139 Sum_probs=389.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+...+.++..|..++..|++++|..++.++++++|.++.+|..+|.+|-.+|+.+++...+-.|--++|++...|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHHcCC
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-----YCVRSDLGNLLKALGR 159 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~ 159 (904)
...++|++.+|.-+|.+|++.+|.+.......+.+|.++|+...|...|.+++...|.. ...-...+..+...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999932 1223344666777777
Q ss_pred hHHHHHHHH-------------HHHhhHHHHHHcCCHHHHHHHHhhcCC----------------------------Ccc
Q psy17306 160 LDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHTENIK----------------------------PVT 198 (904)
Q Consensus 160 ~~~A~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------~~~ 198 (904)
-+.|.+.+. ....++.++.....++.|......... ...
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 788887773 444567888888888888877654322 000
Q ss_pred hhhH--HHHHHhhcCCCcchHHHhhHHHHHhhc-CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q psy17306 199 MKVQ--NAIVCNYGGRKPTTLESAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINL 274 (904)
Q Consensus 199 ~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 274 (904)
.... ...++....+.....+++..+...-.. ..+++..+..++.++...|++.+|+.+|..+....+. +..+|+.+
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 0000 111122223333333443322222121 2355788999999999999999999999998887543 46799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
|.||..+|.+++|++.|++++...|++. +....+..+....+..+.
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~----------------------------------D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNL----------------------------------DARITLASLYQQLGNHEK 501 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCch----------------------------------hhhhhHHHHHHhcCCHHH
Confidence 9999999999999999999999999982 222233333333444444
Q ss_pred HHHhhhccccccccCCCcc-------hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHH
Q psy17306 355 NIKIECASKDLHSGLFGGS-------VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRT 427 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 427 (904)
++................. ......+.+...|.... | ++.+......
T Consensus 502 alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~-----------------------f---i~t~~~Lv~~ 555 (895)
T KOG2076|consen 502 ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE-----------------------F---INTASTLVDD 555 (895)
T ss_pred HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH-----------------------H---HHHHHHHHHH
Confidence 4333332111110000011 11222333333333210 1 1111111111
Q ss_pred hhc---C-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCccccc---chhcccCCCcchhhHhhhHHHHH
Q psy17306 428 AID---H-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGK---FSIRIVPNQTPQCVEKYVLDYLN 500 (904)
Q Consensus 428 ~l~---~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~ 500 (904)
.+. . |+...............+..-.+..+.......++.....+..... .........-...++ +...+.
T Consensus 556 ~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe--l~~e~i 633 (895)
T KOG2076|consen 556 FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE--LFRELI 633 (895)
T ss_pred HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH--HHHHHH
Confidence 111 1 2222211111111111111111111111111111111111111110 000001111111111 111111
Q ss_pred HHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhh-----------
Q psy17306 501 ELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDK----------- 569 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~----------- 569 (904)
......+...++......+.........+ .....+. +....+....+++..|..+.+..+..
T Consensus 634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~-~~~k~l~------~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 634 LSLAKLQRVQEALSVVFTALEAYIFFQDS-EIRKELQ------FLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccH-HHHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 12222233333333333333332222221 1111111 22222334456666666665542211
Q ss_pred ----h-------------hhHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 570 ----S-------------AHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 570 ----a-------------~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
. ..++..+...+|.+ +.....-|..+...+.+.-|+..|-++...+|++|-.-..+|..+..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 0 00111122233433 44445567777888889999999999999999998877777766654
Q ss_pred c--CC--------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc----
Q psy17306 632 A--GD--------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---- 697 (904)
Q Consensus 632 ~--g~--------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 697 (904)
+ ++ .-+++.++.+..+ +....+.-++.+|+|.+|...|=..-|+.+|+++|.+.|..
T Consensus 787 ~a~qr~v~~Rh~~i~qG~afL~RY~~---------lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 787 LALQRRVSNRHAQIAQGFAFLKRYKE---------LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH---------hhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 3 22 1123332222211 11222467899999999999999999999999999997543
Q ss_pred --------HHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 698 --------LDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 698 --------~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
-.+.+||..+|...|+...|.+++.+-
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 468999999999999999999988764
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=229.55 Aligned_cols=422 Identities=20% Similarity=0.175 Sum_probs=284.4
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
..+.++=.+|..+++.|+|++|+++|..++...|+.+..+.+++-||...|+|++.++...++++++|+...+++.++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 45777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHhcCCCh-----
Q psy17306 86 YKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDM----------------EQAVQAYVTALQYNPDL----- 143 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~----------------~~A~~~~~~al~~~p~~----- 143 (904)
+..+|++.+|+....-..-.. -.+......+-+++-.+|.- ..-+..|-....-+|..
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999999988765433221 11111111111111111110 11222232332222211
Q ss_pred -hhHHHHHHHH----HHH-cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 144 -YCVRSDLGNL----LKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 144 -~~~~~~la~~----~~~-~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
....-.+... +.. ...|..|...+.............+..+.-+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l------------------------------ 322 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL------------------------------ 322 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH------------------------------
Confidence 1111122221 211 1245566555533333222222222221111
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
...+.++...|..++-.|++-.|...|+++|.++|.+...+..+|.+|...++.++-...|.++..+
T Consensus 323 -------------e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l 389 (606)
T KOG0547|consen 323 -------------EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL 389 (606)
T ss_pred -------------HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc
Confidence 1124455555666666666666666666666666665555666666666666666666666666666
Q ss_pred CCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH
Q psy17306 298 NPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA 377 (904)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (904)
+|.++
T Consensus 390 dp~n~--------------------------------------------------------------------------- 394 (606)
T KOG0547|consen 390 DPENP--------------------------------------------------------------------------- 394 (606)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 66652
Q ss_pred HHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccc
Q psy17306 378 MTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHG 456 (904)
Q Consensus 378 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~ 456 (904)
++|+..|++. ...+++++|+..|++++.+ |++.-
T Consensus 395 --dvYyHRgQm~-----------------------flL~q~e~A~aDF~Kai~L~pe~~~-------------------- 429 (606)
T KOG0547|consen 395 --DVYYHRGQMR-----------------------FLLQQYEEAIADFQKAISLDPENAY-------------------- 429 (606)
T ss_pred --chhHhHHHHH-----------------------HHHHHHHHHHHHHHHHhhcChhhhH--------------------
Confidence 1122222211 1222255555555555555 33321
Q ss_pred ccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHH
Q psy17306 457 IEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAA 536 (904)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 536 (904)
T Consensus 430 -------------------------------------------------------------------------------- 429 (606)
T KOG0547|consen 430 -------------------------------------------------------------------------------- 429 (606)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 537 RATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
.|..++.+.++++++.+++..|+. ++...|+.++++...|.++..+++++.|++.|.+++.+.|
T Consensus 430 -----~~iQl~~a~Yr~~k~~~~m~~Fee-----------~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 430 -----AYIQLCCALYRQHKIAESMKTFEE-----------AKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 235667777888899999999999 9999999999999999999999999999999999999999
Q ss_pred C------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 617 D------FIDGYINLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 617 ~------~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
. ++..+...|.+..+ .+++..|++ .+.++++++|..-.++..||.+..++|+.++|+++|++
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~-----------Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWKEDINQAEN-----------LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccccccchhhhhhhHhhhchhhhHHHHHH-----------HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9 67777777765543 478888888 77788888999999999999999999999999999999
Q ss_pred HHhcCcCc
Q psy17306 690 AVSLDPNF 697 (904)
Q Consensus 690 al~~~p~~ 697 (904)
++.+...-
T Consensus 563 sa~lArt~ 570 (606)
T KOG0547|consen 563 SAQLARTE 570 (606)
T ss_pred HHHHHHhH
Confidence 99885443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=269.47 Aligned_cols=438 Identities=14% Similarity=0.059 Sum_probs=325.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 28 ERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 28 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
+..+++ -...|-++....-...+....|+.++|+..+.++...+|....++..+|.++...|++++|+..|++++..+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4456677777777778888889999999999988887888888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
.++.++..+|.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l-------------------- 139 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM-------------------- 139 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH--------------------
Confidence 98888889999999999999999999999999998888 888888888888888888877
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++...|+++.++..+|.++...+..++|+..++++.. .|+.
T Consensus 140 ------------------------------------~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 140 ------------------------------------TQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred ------------------------------------HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 688888888888888888888888888888888887665 5441
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhh
Q psy17306 268 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISA 347 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (904)
.... +...+....+-. ..+...
T Consensus 183 ~~~l-----------~~~~~~~~~r~~--~~~~~~--------------------------------------------- 204 (765)
T PRK10049 183 KRDL-----------EADAAAELVRLS--FMPTRS--------------------------------------------- 204 (765)
T ss_pred HHHH-----------HHHHHHHHHHhh--cccccC---------------------------------------------
Confidence 0000 000000000000 000000
Q ss_pred hhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHH
Q psy17306 348 NQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRT 427 (904)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 427 (904)
....+...+.|+..++.
T Consensus 205 ---------------------------------------------------------------~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 205 ---------------------------------------------------------------EKERYAIADRALAQYDA 221 (765)
T ss_pred ---------------------------------------------------------------hhHHHHHHHHHHHHHHH
Confidence 00000002345555555
Q ss_pred hhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHh
Q psy17306 428 AIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKAR 506 (904)
Q Consensus 428 ~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (904)
++.. |..+..
T Consensus 222 ll~~~~~~p~~--------------------------------------------------------------------- 232 (765)
T PRK10049 222 LEALWHDNPDA--------------------------------------------------------------------- 232 (765)
T ss_pred HHhhcccCCcc---------------------------------------------------------------------
Confidence 5443 222211
Q ss_pred cChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHh-hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch-
Q psy17306 507 NSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYN-VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL- 584 (904)
Q Consensus 507 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~- 584 (904)
.+... .+.. .++.+ ...|++++|+..|++ ++...|..
T Consensus 233 ----------------------~~~~~-------~a~~d~l~~L-l~~g~~~eA~~~~~~-----------ll~~~~~~P 271 (765)
T PRK10049 233 ----------------------TADYQ-------RARIDRLGAL-LARDRYKDVISEYQR-----------LKAEGQIIP 271 (765)
T ss_pred ----------------------chHHH-------HHHHHHHHHH-HHhhhHHHHHHHHHH-----------hhccCCCCC
Confidence 00000 0011 13333 466899999999999 77775322
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhH--HHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCY--LKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~l~ 658 (904)
..+...+|.++...|++++|+..|+++++.+|.+ ......++.++...|++++|+..++++....|... .....
T Consensus 272 ~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~ 351 (765)
T PRK10049 272 PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT 351 (765)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence 2234446999999999999999999999988876 45678888899999999999998888887766311 00123
Q ss_pred cCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 659 TRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 659 ~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
..|++ ..++..+|.++...|++++|++.+++++...|.++.++..+|.++...|++++|++.+++++...|++..+..
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 34554 4678899999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q psy17306 737 ILERCEAKTEELNKKFEQL 755 (904)
Q Consensus 737 ~l~~~~~~~~~~~~~~~~l 755 (904)
..+......+++.++...+
T Consensus 432 ~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 8888888777777665544
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=230.92 Aligned_cols=447 Identities=21% Similarity=0.251 Sum_probs=285.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
..|...+..|+|+.|+.+|..++.++|.|...+.+...+|..+|+|++|+..-.+.++++|+++..|..+|..+.-+|+|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH---HHHHhh-----HHHHHHcCCHHHHHHHHhhcCCCc-
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY---CVRSDL-----GNLLKALGRLDEAKNLHTENIKPV- 197 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~- 197 (904)
++|+..|.+.|+.+|++.....+++.++... +. +...| ..+..+ .........+..-+..+++.-..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 6666666666666666666666665555111 10 01111 000000 011111111111111111100000
Q ss_pred ----chhhHHHHHHhhcC----------------CCc-----chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 198 ----TMKVQNAIVCNYGG----------------RKP-----TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 198 ----~~~~~~~~~~~~~~----------------~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
.............. ... .....++. ................+|...+...++..
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d-~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIED-NTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccch-hHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00000000000000 000 00000000 00000011224556789999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhccc
Q psy17306 253 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMK 332 (904)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 332 (904)
|+.+|..+++++ .+...+.+.+.+|+..|.+.+.+....++++.....-
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r------------------------------ 291 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR------------------------------ 291 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH------------------------------
Confidence 999999999999 8899999999999999999999999999877655430
Q ss_pred ccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHH
Q psy17306 333 RPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412 (904)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
.....++.++..+|..+
T Consensus 292 ----------------------------------------ad~klIak~~~r~g~a~----------------------- 308 (539)
T KOG0548|consen 292 ----------------------------------------ADYKLIAKALARLGNAY----------------------- 308 (539)
T ss_pred ----------------------------------------HHHHHHHHHHHHhhhhh-----------------------
Confidence 01112334444444433
Q ss_pred HHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhH
Q psy17306 413 QFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVE 492 (904)
Q Consensus 413 ~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (904)
...+.++.++..|.+++..
T Consensus 309 ~k~~~~~~ai~~~~kaLte------------------------------------------------------------- 327 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTE------------------------------------------------------------- 327 (539)
T ss_pred hhHHhHHHHHHHHHHHhhh-------------------------------------------------------------
Confidence 1123366777777776543
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
..-.++.......++++.....
T Consensus 328 ---------------------------------------------------~Rt~~~ls~lk~~Ek~~k~~e~------- 349 (539)
T KOG0548|consen 328 ---------------------------------------------------HRTPDLLSKLKEAEKALKEAER------- 349 (539)
T ss_pred ---------------------------------------------------hcCHHHHHHHHHHHHHHHHHHH-------
Confidence 1112233344455566666655
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
..-.+|.-+.--...|..++..|+|..|+..|.++|..+|+++..|.|.|.||..+|.+..|+. .
T Consensus 350 ----~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~-----------D 414 (539)
T KOG0548|consen 350 ----KAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK-----------D 414 (539)
T ss_pred ----HHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH-----------H
Confidence 5556777777777889999999999999999999999999999999999999999999999999 8
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
...+++++|+...+|..-|.++..+.+|++|++.|+++++.+|++..+...+..|...+.......++.+++.
T Consensus 415 a~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 415 AKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 8888889999999999999999999999999999999999999999999999999988777777777777743
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-25 Score=221.11 Aligned_cols=490 Identities=13% Similarity=0.071 Sum_probs=365.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+..+-+-+..+.+|.-|+-+-+++.... .+|.-.+.+|.+++-.|++.+|....+.- .+...+..+.+..+.++....
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHH
Confidence 3444556778899999999999998877 78888999999999999999998888765 556677889999999999999
Q ss_pred cHHHHHHHHHHHH------hcCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 91 QLQEALENYRHAV------RLKPDF-------------------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 91 ~~~~A~~~~~~al------~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
+|++|+..+.+.- .-+|.+ ....+..|.+|..+.+.++|...|.+|+..++.+.+
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~E 176 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFE 176 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHH
Confidence 9999999888331 111111 224567788899999999999999999999999988
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH-HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL-DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
+...+........+ +-...+ ..+--.. ..+.. +.-...|+-........... .... +
T Consensus 177 a~~~lvs~~mlt~~--Ee~~ll---~~l~~a~-~~~ed~e~l~~lyel~~~k~~n~~~~----~r~~------------~ 234 (611)
T KOG1173|consen 177 AFEKLVSAHMLTAQ--EEFELL---ESLDLAM-LTKEDVERLEILYELKLCKNRNEESL----TRNE------------D 234 (611)
T ss_pred HHHHHHHHHhcchh--HHHHHH---hcccHHh-hhhhHHHHHHHHHHhhhhhhcccccc----ccCc------------h
Confidence 87776555443221 111111 0000000 00111 11111111000000000000 0000 0
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
..+..-.++.......+..++..++|.+..+.++..++.+|-+...+...-.++...|+..+-...-.+..+..|+. +
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~--a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK--A 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--C
Confidence 11122234567788888888899999999999999999988887766544448888888888877788888888887 2
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYI 384 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (904)
..|. .++..|+.
T Consensus 313 ~sW~--------------------------------------------------------------------aVg~YYl~ 324 (611)
T KOG1173|consen 313 LSWF--------------------------------------------------------------------AVGCYYLM 324 (611)
T ss_pred cchh--------------------------------------------------------------------hHHHHHHH
Confidence 2221 12222333
Q ss_pred hhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 385 MGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 385 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+|. +.+|...|.++..+ |.+..
T Consensus 325 i~k------------------------------~seARry~SKat~lD~~fgp--------------------------- 347 (611)
T KOG1173|consen 325 IGK------------------------------YSEARRYFSKATTLDPTFGP--------------------------- 347 (611)
T ss_pred hcC------------------------------cHHHHHHHHHHhhcCccccH---------------------------
Confidence 333 77788888887776 44332
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
+|
T Consensus 348 ------------------------------------------------------------------------------aW 349 (611)
T KOG1173|consen 348 ------------------------------------------------------------------------------AW 349 (611)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 34
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|..+...|..++|+..|.. |-+..|........+|.-|...++++.|...|.+|+.+.|.++-.+.
T Consensus 350 l~fghsfa~e~EhdQAmaaY~t-----------Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFT-----------AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHH-----------HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 7788889999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
.+|.+.+..+.|.+|..+|+.++..- .....-.+.....+.+||.++.+++.+++|+.+|+++|.+.|.++.++..
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~i----k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVI----KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHh----hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence 99999999999999999999988532 22333334456679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
+|.+|..+|+++.|++.|.+++.+.|++.-+...++.+...
T Consensus 495 ig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888888766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-24 Score=240.21 Aligned_cols=474 Identities=16% Similarity=0.080 Sum_probs=356.0
Q ss_pred HhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHH
Q psy17306 35 WRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114 (904)
Q Consensus 35 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 114 (904)
.-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++.-.|.....+.
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34578889999999999999999999999999999999998655558888888999999999999999944444455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 115 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l--------------------------- 159 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA--------------------------- 159 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH---------------------------
Confidence 56889999999999999999999999999999999999999999998888887
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
.++...+|..... ..++.++...++..+|+..++++++.+|++..++..+
T Consensus 160 -----------------------------~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 160 -----------------------------TELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred -----------------------------HHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5777888875554 5566666667888789999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
..++...|-...|.+...+ .|+.+....+ ...+..
T Consensus 210 ~~~l~~~~~~~~a~~l~~~----~p~~f~~~~~------~~l~~~----------------------------------- 244 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKE----NPNLVSAEHY------RQLERD----------------------------------- 244 (822)
T ss_pred HHHHHHcCCcHHHHHHHHh----CccccCHHHH------HHHHHH-----------------------------------
Confidence 9999999999888866554 4543110000 000000
Q ss_pred HHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CC
Q psy17306 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PK 433 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~ 433 (904)
..+. ....+..... ....-....+.|+..++..+.. +.
T Consensus 245 ----------------------~~a~-~vr~a~~~~~------------------~~~~r~~~~d~ala~~~~l~~~~~~ 283 (822)
T PRK14574 245 ----------------------AAAE-QVRMAVLPTR------------------SETERFDIADKALADYQNLLTRWGK 283 (822)
T ss_pred ----------------------HHHH-HHhhcccccc------------------cchhhHHHHHHHHHHHHHHHhhccC
Confidence 0000 0000000000 0001112267788888887775 44
Q ss_pred cchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHH
Q psy17306 434 LTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFK 513 (904)
Q Consensus 434 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 513 (904)
.+.. . ..+.....+.+..+ ...+...
T Consensus 284 ~p~~-------------------------------------------------~-~~~~~~~~Drl~aL----~~r~r~~ 309 (822)
T PRK14574 284 DPEA-------------------------------------------------Q-ADYQRARIDRLGAL----LVRHQTA 309 (822)
T ss_pred CCcc-------------------------------------------------c-hHHHHHHHHHHHHH----HHhhhHH
Confidence 3322 0 00111112222222 2223344
Q ss_pred HHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC------CchHHH
Q psy17306 514 AYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN------PLLAEA 587 (904)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~------p~~~~~ 587 (904)
++++.+..+......-|... ....|+.|...++.++|+.+|+. ++... |.....
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~---------~~a~adayl~~~~P~kA~~l~~~-----------~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYA---------RRWAASAYIDRRLPEKAAPILSS-----------LYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHH---------HHHHHHHHHhcCCcHHHHHHHHH-----------HhhccccccCCCcchHH
Confidence 44444444443332223222 36688999999999999999999 66654 223344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLK---------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
...|-.++...+++++|....++..+.. |+...+...++.++...|++.+|++ .
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~-----------~ 438 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK-----------K 438 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH-----------H
Confidence 5778889999999999999999999843 4456788899999999999999999 7
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+++.+...|.++..+..+|.++...|++.+|...++.++.++|.+..+...+|.++..+|+|.+|.....+.++..|++.
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hHHH
Q psy17306 733 DIDV 736 (904)
Q Consensus 733 ~~~~ 736 (904)
.+..
T Consensus 519 ~~~~ 522 (822)
T PRK14574 519 PSQE 522 (822)
T ss_pred hHHH
Confidence 6654
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-25 Score=213.69 Aligned_cols=468 Identities=19% Similarity=0.179 Sum_probs=333.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-----cHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWR--QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-----LAEAY 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 79 (904)
.-..++.+|..|-...-+.+|+..|+-+++ ..|+....-..+|.++++..+|.+|+++|+.++..-|. ...++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 345688999999999999999999988775 46777778888999999999999999999999998775 34578
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCChhh
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------------NPDLYC 145 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~ 145 (904)
.++|..+.+.|.|+.|+..|+.+++..|+.. +-+++..|++..|+-++..+.|.+.+.+ +|++.-
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 8899999999999999999999999999854 4566778999999999999999999876 122111
Q ss_pred HHHHHH-HHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH----HHHHHhhcCCCcchHHHh
Q psy17306 146 VRSDLG-NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ----NAIVCNYGGRKPTTLESA 220 (904)
Q Consensus 146 ~~~~la-~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~ 220 (904)
.-..+- ..+....+-.+ .+-++++..-.+.+.++..... .+.+..
T Consensus 359 l~eai~nd~lk~~ek~~k------------------a~aek~i~ta~kiiapvi~~~fa~g~dwcle~------------ 408 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENK------------------ADAEKAIITAAKIIAPVIAPDFAAGCDWCLES------------ 408 (840)
T ss_pred HHHHHhhHHHHHHHHhhh------------------hhHHHHHHHHHHHhccccccchhcccHHHHHH------------
Confidence 111110 11111111111 1112222222222222211100 000000
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Q psy17306 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAA--GDMEQAVQAYVTALQY 297 (904)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 297 (904)
-++....|-..+.-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.+|..+++.+ .++.+|..+...++.+
T Consensus 409 ---lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~ 485 (840)
T KOG2003|consen 409 ---LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI 485 (840)
T ss_pred ---HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc
Confidence 01111222223344556667777888888887776554443322 23445555555553 3677777777777776
Q ss_pred CCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhH
Q psy17306 298 NPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEA 377 (904)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (904)
+.-+
T Consensus 486 dryn---------------------------------------------------------------------------- 489 (840)
T KOG2003|consen 486 DRYN---------------------------------------------------------------------------- 489 (840)
T ss_pred cccC----------------------------------------------------------------------------
Confidence 6655
Q ss_pred HHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccc
Q psy17306 378 MTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHG 456 (904)
Q Consensus 378 ~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~ 456 (904)
+.++.+.|.....+|. +++|.+.|+.++.. .+.
T Consensus 490 -~~a~~nkgn~~f~ngd-----------------------~dka~~~ykeal~ndasc---------------------- 523 (840)
T KOG2003|consen 490 -AAALTNKGNIAFANGD-----------------------LDKAAEFYKEALNNDASC---------------------- 523 (840)
T ss_pred -HHHhhcCCceeeecCc-----------------------HHHHHHHHHHHHcCchHH----------------------
Confidence 2222333333333333 66677777766654 100
Q ss_pred ccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHH
Q psy17306 457 IEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAA 536 (904)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 536 (904)
T Consensus 524 -------------------------------------------------------------------------------- 523 (840)
T KOG2003|consen 524 -------------------------------------------------------------------------------- 523 (840)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 537 RATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 537 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
..+++++|..+..+|+.++|+.+|-+ .-.+--+++.+++.++.+|..+.+..+|++++.++..+-|
T Consensus 524 ---~ealfniglt~e~~~~ldeald~f~k-----------lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 524 ---TEALFNIGLTAEALGNLDEALDCFLK-----------LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred ---HHHHHHhcccHHHhcCHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 12348889999999999999999988 5555566789999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+++.++..||.+|-+.|+..+|.+ ++-.....-|.+.+..-.||..|....-+++|+.+|++|--+.|+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq-----------~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQ-----------CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhh-----------hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999998 666667788888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 697 FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
.......++.|+.+.|+|.+|.+.|+..-...|.+-+..
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 888888899999999999999999998887777765443
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-22 Score=206.94 Aligned_cols=181 Identities=18% Similarity=0.099 Sum_probs=148.3
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..+|.++.+.++.+.|...|.. .+...|.++-.|..++.+-...|+.-.|...++++.-.+|.+...|.
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~-----------G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQ-----------GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHh-----------ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHH
Confidence 7777777777777777777777 77777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChh-------------------hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPS-------------------CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
....+-.+.|+.+.|.....+||+..|+ .+..+++.-.+++.++...|..+....++++|.
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777764 344555566678889999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 685 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
+.|.+++.++|++.++|..+-..+...|.-++-.++|.+.....|.....-
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 999999999999999999999999999999999999999998888765443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-23 Score=204.77 Aligned_cols=381 Identities=17% Similarity=0.120 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVY 86 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 86 (904)
-.++..|.++...|..+.|++.+..++...|-+-.+|..++.+... ++.....+.--| .+...-+.++.++
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 3466777788888888888888888887778777777777765432 223333332223 3445556677778
Q ss_pred HHhCcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
....+.++++.-++..+.. .|.+...-...|.+.....|+++|+..|+...+.+|-..+-.-.+.+++.-..+-.+ +.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk-Ls 316 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK-LS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH-HH
Confidence 7778888888888888887 688787888888888899999999999999998888766555555555544333211 11
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ ...+..++.-.++....+|+.|.
T Consensus 317 ~L-------------------------------------------------------A~~v~~idKyR~ETCCiIaNYYS 341 (559)
T KOG1155|consen 317 YL-------------------------------------------------------AQNVSNIDKYRPETCCIIANYYS 341 (559)
T ss_pred HH-------------------------------------------------------HHHHHHhccCCccceeeehhHHH
Confidence 11 03455666667888899999999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHh
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRR 325 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~ 325 (904)
..++.++|+.+|+++++++|....+|..+|.-|..+++...|++.|++|++++|.+.
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy----------------------- 398 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY----------------------- 398 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----------------------
Confidence 999999999999999999999999999999999999999999999999999999871
Q ss_pred hhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccC
Q psy17306 326 GALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVE 405 (904)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 405 (904)
T Consensus 399 -------------------------------------------------------------------------------- 398 (559)
T KOG1155|consen 399 -------------------------------------------------------------------------------- 398 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCC
Q psy17306 406 PLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPN 485 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (904)
T Consensus 399 -------------------------------------------------------------------------------- 398 (559)
T KOG1155|consen 399 -------------------------------------------------------------------------------- 398 (559)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHH
Q psy17306 486 QTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECR 565 (904)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 565 (904)
.+|+.+|+.|.-.+...=|+-+|++
T Consensus 399 -------------------------------------------------------RAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 399 -------------------------------------------------------RAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred -------------------------------------------------------HHHhhhhHHHHHhcchHHHHHHHHH
Confidence 2357788888888888899999999
Q ss_pred HhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 566 ~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
++...|+++..|..||.||.+.++.++|+.+|.+++.....+..++..||.+|.++++.++|..+|++.
T Consensus 424 -----------A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 424 -----------ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred -----------HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888999999999999999999999999988
Q ss_pred HhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 646 l~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
++. ....-...|+...+...|+.-+.+.+++++|..+..+++.-++...++..-+-
T Consensus 493 v~~----~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlR 548 (559)
T KOG1155|consen 493 VEV----SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLR 548 (559)
T ss_pred HHH----HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 873 33334567778888888999999999999999999999998776655544333
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=216.08 Aligned_cols=416 Identities=22% Similarity=0.249 Sum_probs=306.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
..+-.+|...+..|+|+.|+.+|..++.++|.+...+.....+|...|+|++|++--.+.++++|.-+..|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHHHHHhcCCChh
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD------------------------MEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~al~~~p~~~ 144 (904)
+|+|++|+..|.+.|+.+|++...+.+++.++..... .+.+.....+.+..+|.+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999999999999999999999988822200 0111122222222233222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHH----------------------------------------------HHHHhhHHHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLY----------------------------------------------CVRSDLGNLLK 178 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~----------------------------------------------~~~~~l~~~~~ 178 (904)
..+..--. ...+...+ .....+|....
T Consensus 163 ~~~l~d~r-------~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 163 KLYLNDPR-------LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcccccHH-------HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 11111000 00000000 12223344444
Q ss_pred HcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 179 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
...+++.|+. .+..++.++ .+...+.+.+-+++..|.+.+.+....
T Consensus 236 kkk~f~~a~q---------------------------------~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~ 281 (539)
T KOG0548|consen 236 KKKDFETAIQ---------------------------------HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCE 281 (539)
T ss_pred HhhhHHHHHH---------------------------------HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchH
Confidence 4444444444 445888888 888999999999999999999999999
Q ss_pred HHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcc
Q psy17306 259 HAVRLKPDF-------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMM 331 (904)
Q Consensus 259 ~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 331 (904)
.+++..... ..+...+|..+...++++.|+.+|.+++.......
T Consensus 282 ~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~----------------------------- 332 (539)
T KOG0548|consen 282 KAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD----------------------------- 332 (539)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH-----------------------------
Confidence 988775433 23445567788889999999999999886554320
Q ss_pred cccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccH
Q psy17306 332 KRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
.
T Consensus 333 -------------~------------------------------------------------------------------ 333 (539)
T KOG0548|consen 333 -------------L------------------------------------------------------------------ 333 (539)
T ss_pred -------------H------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhh
Q psy17306 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCV 491 (904)
Q Consensus 412 ~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (904)
..-.+..++++.......-.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~------------------------------------------------------------ 353 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYI------------------------------------------------------------ 353 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhh------------------------------------------------------------
Confidence 00001122222222221111
Q ss_pred HhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhh
Q psy17306 492 EKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSA 571 (904)
Q Consensus 492 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~ 571 (904)
+|+-.. --...|..++..|+|..|+..|.+
T Consensus 354 ----------------------------------~pe~A~----------e~r~kGne~Fk~gdy~~Av~~Yte------ 383 (539)
T KOG0548|consen 354 ----------------------------------NPEKAE----------EEREKGNEAFKKGDYPEAVKHYTE------ 383 (539)
T ss_pred ----------------------------------ChhHHH----------HHHHHHHHHHhccCHHHHHHHHHH------
Confidence 111111 114558899999999999999999
Q ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 572 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+|..+|+++.+|.++|.||..+|++..|+...+.+++++|++..+|.+.|.++..+.+|++|++
T Consensus 384 -----AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle----------- 447 (539)
T KOG0548|consen 384 -----AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE----------- 447 (539)
T ss_pred -----HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.|.++++.+|++..+...+..|...+.......+..++++ .+|+-..+
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~-~dpev~~i 495 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM-ADPEVQAI 495 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc-cCHHHHHH
Confidence 6667777888888898899888887655555566666632 34543333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-22 Score=227.37 Aligned_cols=457 Identities=12% Similarity=-0.002 Sum_probs=336.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|......+..+...++.|++..|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 55677889999999999999999999999999999996555588888899999999999999999444455556666688
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
++..+|++++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...++..+|+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL 189 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986654 66677776778887788
Q ss_pred HHH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH-------Hhhc--------CCCcchHH
Q psy17306 165 DLY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV-------CNYG--------GRKPTTLE 218 (904)
Q Consensus 165 ~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~--------~~~~~~~~ 218 (904)
..+ +....+.......|-...|.++..+.-+.........+. .... ++......
T Consensus 190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 190 QASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 888 355666778888888888888887655433322211111 0000 11123334
Q ss_pred HhhHHHHHhh---cCchh----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 219 SAHFSTLAIK---QNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 219 a~~~~~~~~~---~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
++..++..+. ..|.. ..+..-.-.++...|++.+++..|+...... |--..+....|..|...+++++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4555555554 33321 2223334445566677777777777755443 22334666677777777777777777
Q ss_pred HHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCC
Q psy17306 291 YVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLF 370 (904)
Q Consensus 291 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
|++++...|....
T Consensus 350 ~~~~~~~~~~~~~------------------------------------------------------------------- 362 (822)
T PRK14574 350 LSSLYYSDGKTFR------------------------------------------------------------------- 362 (822)
T ss_pred HHHHhhccccccC-------------------------------------------------------------------
Confidence 7777655432100
Q ss_pred CcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccC
Q psy17306 371 GGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYP 450 (904)
Q Consensus 371 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~ 450 (904)
T Consensus 363 -------------------------------------------------------------------------------- 362 (822)
T PRK14574 363 -------------------------------------------------------------------------------- 362 (822)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCc
Q psy17306 451 SLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHP 530 (904)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 530 (904)
.|.+.
T Consensus 363 ---------------------------------------------------------------------------~~~~~ 367 (822)
T PRK14574 363 ---------------------------------------------------------------------------NSDDL 367 (822)
T ss_pred ---------------------------------------------------------------------------CCcch
Confidence 00000
Q ss_pred chHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhH---HH-HHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHF---ST-LAIKQNPLLAEAYSNLGNVYKERGQLQEALE 606 (904)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~---~~-~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 606 (904)
.....+.-.+...+++++|..+.++..+..--. +. ..-.-+|+...+...++.++...|++.+|++
T Consensus 368 ----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 368 ----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 000223344566777788877777722210000 00 0001245566788899999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.+++.+...|.++..+..+|.++...|.+.+|.+ .++.+..++|++..+...+|.++..+|++.+|...
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~-----------~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ-----------ELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999 67777788999999999999999999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGN 706 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~ 706 (904)
..++++..|+++... .|..
T Consensus 507 ~~~l~~~~Pe~~~~~-~l~r 525 (822)
T PRK14574 507 TDDVISRSPEDIPSQ-ELDR 525 (822)
T ss_pred HHHHHhhCCCchhHH-HHHH
Confidence 999999999998554 3444
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-23 Score=202.20 Aligned_cols=441 Identities=16% Similarity=0.140 Sum_probs=297.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----C
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR--------------QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----N 72 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~ 72 (904)
.+.+|..++....++.|.-.++.... ......+-...+-.-..........+..+.+-++. .
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~~~~~ 160 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESKHCGG 160 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHHHhcc
Confidence 46677788888888877766665421 12222111111111112222223334444443332 2
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHH
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDL 150 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 150 (904)
..++..++..|.++.+.|....|+..|..++...|-+-.+|..|+.+... ++........-| .+.-.-..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHH
Confidence 34578889999999999999999999999999999999999988877643 233333333334 334445567
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ- 229 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 229 (904)
+.++....+.++++.-+ +.....
T Consensus 234 ~~a~~el~q~~e~~~k~--------------------------------------------------------e~l~~~g 257 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKK--------------------------------------------------------ERLSSVG 257 (559)
T ss_pred HHHHHHHHHHHHHHHHH--------------------------------------------------------HHHHhcc
Confidence 77777777888887666 233333
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNT 309 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 309 (904)
-|.....-...|.+.....++++|+..|+...+.+|-..+-.-....+++-.++-.+-.-.-+.+..++.-.++
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~E------ 331 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPE------ 331 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcc------
Confidence 56666666777888888888888888888888888876666666666666655544444444555554433311
Q ss_pred CcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccc
Q psy17306 310 EPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLV 389 (904)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 389 (904)
+...+|+-+
T Consensus 332 -----------------------------------------------------------------------TCCiIaNYY 340 (559)
T KOG1155|consen 332 -----------------------------------------------------------------------TCCIIANYY 340 (559)
T ss_pred -----------------------------------------------------------------------ceeeehhHH
Confidence 000011101
Q ss_pred ccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcc
Q psy17306 390 EPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468 (904)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 468 (904)
+...+.+.|+..|++++++ |+..
T Consensus 341 -----------------------Slr~eHEKAv~YFkRALkLNp~~~--------------------------------- 364 (559)
T KOG1155|consen 341 -----------------------SLRSEHEKAVMYFKRALKLNPKYL--------------------------------- 364 (559)
T ss_pred -----------------------HHHHhHHHHHHHHHHHHhcCcchh---------------------------------
Confidence 2223355566666655555 3222
Q ss_pred cccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCch
Q psy17306 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPD 548 (904)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 548 (904)
.+|..+|.
T Consensus 365 ------------------------------------------------------------------------~aWTLmGH 372 (559)
T KOG1155|consen 365 ------------------------------------------------------------------------SAWTLMGH 372 (559)
T ss_pred ------------------------------------------------------------------------HHHHHhhH
Confidence 13477888
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
-|....+...|+..|++ +++++|.+-.+|+.+|..|..++.+.=|+-+|++|++..|+++..|..||.|
T Consensus 373 EyvEmKNt~AAi~sYRr-----------Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRR-----------AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred HHHHhcccHHHHHHHHH-----------HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 88888888888888888 8888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-------cCcCcHHHH
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS-------LDPNFLDAY 701 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~ 701 (904)
|.+.++.++|++ +|.+++.....+..++..||.+|.++++.++|..+|++.++ ++|+...+.
T Consensus 442 Y~kl~~~~eAiK-----------Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 442 YEKLNRLEEAIK-----------CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred HHHhccHHHHHH-----------HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 888888888888 66677777767778888888888888888888888888888 467677777
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERC 741 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 741 (904)
.-|+.-+.+.+++++|..+-..++.-.+.-+.....+..+
T Consensus 511 ~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 511 LFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 7788888888888888888877777644334333333333
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-25 Score=225.88 Aligned_cols=169 Identities=20% Similarity=0.233 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHH--hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 77 EAYSNLGNVYKE--RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 77 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
..+..+|..|.. +-+..+|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-++.|-.....-.+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 345555555544 445678888888866667777788888888888888888888888888888886544433333333
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
..+.+-- ++..+ . +..+..+|+.|
T Consensus 398 WHLq~~v-~Ls~L-----------------------a--------------------------------q~Li~~~~~sP 421 (638)
T KOG1126|consen 398 WHLQDEV-ALSYL-----------------------A--------------------------------QDLIDTDPNSP 421 (638)
T ss_pred HHHHhhH-HHHHH-----------------------H--------------------------------HHHHhhCCCCc
Confidence 3332211 01111 0 34555566666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.|..+|++|.-+++++.|+++|++|+.++|....++..+|.-+....+++.|..+|++++..+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 6666666666666666666666666666666666666666666666666666666666665555544
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=209.84 Aligned_cols=407 Identities=19% Similarity=0.207 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH------HhcCcc-------
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA------IKQNPL------- 74 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~------- 74 (904)
....+-+|+.++..|++..|......- ..+..+....+..+.++....++++|..++.+. +..+|.
T Consensus 49 p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~ 127 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLE 127 (611)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceec
Confidence 455678899999999999998877654 556677889999999999999999999988733 111111
Q ss_pred ------------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----------------C
Q psy17306 75 ------------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-----------------D 125 (904)
Q Consensus 75 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~ 125 (904)
.....+.+|.+|....+.++|...|.+++..++.+.+++..+-..++-.- .
T Consensus 128 ~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 128 LNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 12356788999999999999999999999999887776655543332211 1
Q ss_pred HHHHHHHHHHHH----------hcCC--------ChhhHHHHHHHHHHHcCChHHHHHHHHHHH------------hhHH
Q psy17306 126 MEQAVQAYVTAL----------QYNP--------DLYCVRSDLGNLLKALGRLDEAKDLYCVRS------------DLGN 175 (904)
Q Consensus 126 ~~~A~~~~~~al----------~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------~l~~ 175 (904)
..+=++.+-++. ..+| ++++.....+..+...+++.+..+..+... .+|
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia- 286 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA- 286 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-
Confidence 111111111111 1122 346778888999999999999888772211 122
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 255 (904)
.+...|+..+-.- .-.+.+...|..+..|+.+|..|...|++++|..
T Consensus 287 ~l~el~~~n~Lf~---------------------------------lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 287 CLYELGKSNKLFL---------------------------------LSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HHHHhcccchHHH---------------------------------HHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 2223332222111 1137778889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccc
Q psy17306 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPV 335 (904)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 335 (904)
+|.++..++|....+|...|.++...|..++|+..|..|-++.|..-.
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-------------------------------- 381 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-------------------------------- 381 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--------------------------------
Confidence 999999999999999999999999999999999999999888887600
Q ss_pred cchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHH
Q psy17306 336 LGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFY 415 (904)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (904)
T Consensus 382 -------------------------------------------------------------------------------- 381 (611)
T KOG1173|consen 382 -------------------------------------------------------------------------------- 381 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhh
Q psy17306 416 EKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYV 495 (904)
Q Consensus 416 ~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (904)
T Consensus 382 -------------------------------------------------------------------------------- 381 (611)
T KOG1173|consen 382 -------------------------------------------------------------------------------- 381 (611)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHH
Q psy17306 496 LDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFST 575 (904)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~ 575 (904)
-..-+|.-|...++++.|..+|.+
T Consensus 382 ----------------------------------------------P~LYlgmey~~t~n~kLAe~Ff~~---------- 405 (611)
T KOG1173|consen 382 ----------------------------------------------PSLYLGMEYMRTNNLKLAEKFFKQ---------- 405 (611)
T ss_pred ----------------------------------------------hHHHHHHHHHHhccHHHHHHHHHH----------
Confidence 014466777788999999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----PD---FIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 576 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
++.+.|.++..+..+|.+.+..+.|.+|..+|+.++..- +. ....+.|||.++.+++.+++|+.
T Consensus 406 -A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~-------- 476 (611)
T KOG1173|consen 406 -ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID-------- 476 (611)
T ss_pred -HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH--------
Confidence 999999999999999999999999999999999999432 22 34578999999999999999999
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.+++++...|.++.++..+|.+|..+|+++.|++.|.++|.++|++..+-.-|+.+..
T Consensus 477 ---~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 477 ---YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred ---HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999999999999888877775543
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=219.86 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHH
Q psy17306 111 DGYINLAAALVA--AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 111 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~ 188 (904)
..+..+|..|.. +-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F--------------------- 376 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIF--------------------- 376 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 345566666554 456789999999976777777788889999999999999998888
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 268 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (904)
+.+-...|......-....++..+.+--+--...+..+..+|+.|
T Consensus 377 -----------------------------------~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sP 421 (638)
T KOG1126|consen 377 -----------------------------------SLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSP 421 (638)
T ss_pred -----------------------------------HHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence 455555665444444445555555444444445566778899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhh
Q psy17306 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISAN 348 (904)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (904)
.+|..+|.||..+++++.|+++|+++++++|...
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa---------------------------------------------- 455 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA---------------------------------------------- 455 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----------------------------------------------
Confidence 9999999999999999999999999999999770
Q ss_pred hhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHh
Q psy17306 349 QEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTA 428 (904)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 428 (904)
T Consensus 456 -------------------------------------------------------------------------------- 455 (638)
T KOG1126|consen 456 -------------------------------------------------------------------------------- 455 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcC
Q psy17306 429 IDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNS 508 (904)
Q Consensus 429 l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 508 (904)
T Consensus 456 -------------------------------------------------------------------------------- 455 (638)
T KOG1126|consen 456 -------------------------------------------------------------------------------- 455 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHH
Q psy17306 509 PNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588 (904)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~ 588 (904)
.+|..+|.-+.....++.|...|+. ++..+|.+..+|
T Consensus 456 --------------------------------YayTLlGhE~~~~ee~d~a~~~fr~-----------Al~~~~rhYnAw 492 (638)
T KOG1126|consen 456 --------------------------------YAYTLLGHESIATEEFDKAMKSFRK-----------ALGVDPRHYNAW 492 (638)
T ss_pred --------------------------------hhhhhcCChhhhhHHHHhHHHHHHh-----------hhcCCchhhHHH
Confidence 1236667777778889999999999 999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+. .+++|+.++|.++...+
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~-----------~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ-----------LYEKAIHLDPKNPLCKY 561 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH-----------HHHHHHhcCCCCchhHH
Confidence 9999999999999999999999999999999999999999999999999999 77788889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhh
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDED 733 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 733 (904)
..|.++...+++++|+..+++.-++-|+...+++.+|.+|.+.|+.+.|+..|-=|.+..|...+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999887665
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-21 Score=206.78 Aligned_cols=646 Identities=17% Similarity=0.098 Sum_probs=368.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
-|....+++.+|.+|-+.|+.+++...+-.+-..+|++.+.|..++....++|.+++|.-+|.++++.+|.+....+..+
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCC----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDF----I-DGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKA 156 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~----~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 156 (904)
.+|.++|+...|...|.+++...|.. . ..-...+..+...++-+.|++.++.++.... ...+-+..++.++..
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 99999999999999999999999832 1 2233446777788888999999999988322 223456677777877
Q ss_pred cCChHHHHHHHH---------------------------------------H-HHhhHHHHHHcCCHHHHHHHHhhcCC-
Q psy17306 157 LGRLDEAKDLYC---------------------------------------V-RSDLGNLLKALGRLDEAKNLHTENIK- 195 (904)
Q Consensus 157 ~~~~~~A~~~~~---------------------------------------~-~~~l~~~~~~~g~~~~A~~~~~~~~~- 195 (904)
..+++.|..... + ...++.+..+.++..+++..+...-.
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 777777766650 1 11222222333333333333221111
Q ss_pred -CcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17306 196 -PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (904)
+........-+.......+....++.++..+....+ .+..+|+.+|.+|..+|.+++|+.+|++++...|++.++...
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~ 488 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARIT 488 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhh
Confidence 000000000011111222333344444445544443 336799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhh
Q psy17306 274 LAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCA 353 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (904)
|+.++..+|++++|.+.++....-++.+.+...|....-+. ......+...+.... -+-.....+.......-.+.
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~-~~r~d~l~~~gk~E~---fi~t~~~Lv~~~~~~~~~f~ 564 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL-AHRCDILFQVGKREE---FINTASTLVDDFLKKRYIFP 564 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH-HHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999874443333333333211111 000000111110000 00000000000000000000
Q ss_pred HHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCccccc--ccccccCcc-cccH----------HHHHHHHhh
Q psy17306 354 VNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIP--HIYKDVEPL-GDTE----------EQFYEKIDF 420 (904)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~--~~~~~~~~~-~~~~----------~~~~~~~~~ 420 (904)
...+-......-......+.....+..+....+......+....+ ......+.+ ...| ..-.+++++
T Consensus 565 ~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 565 RNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred hHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000000000000000111111222222211111100000000000 000000100 0111 111233666
Q ss_pred hHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccC-CCcchhhHhhhHHHH
Q psy17306 421 DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVP-NQTPQCVEKYVLDYL 499 (904)
Q Consensus 421 A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 499 (904)
|......++..+.+.......-.+. ..++..++. ....+...+.+-.-+.. ......+. ..+
T Consensus 645 Al~vv~~a~~~~~f~~~~~~~k~l~--------~~~l~~s~~-----~~d~~~a~~~lR~~i~~~~~~~~~~q----~~l 707 (895)
T KOG2076|consen 645 ALSVVFTALEAYIFFQDSEIRKELQ--------FLGLKASLY-----ARDPGDAFSYLRSVITQFQFYLDVYQ----LNL 707 (895)
T ss_pred HHHHHHHHHhhhhhhccHHHHHHHH--------HHHHHHHHh-----cCCHHHHHHHHHHHHHHHhhhhhhHH----HHH
Confidence 6666666665522221111000000 000000000 00000000000000000 00000000 011
Q ss_pred HH-HHHHhcChhHHHHHHHhcccccccCCCC-cchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 500 NE-LWKARNSPNKFKAYLLDSGKSWRTNPEH-PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 500 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
-. .+.......+-.-++.....+...+|++ +... ...|...+..+.+.-|+..|.+ +
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~----------~i~gh~~~~~~s~~~Al~~y~r-----------a 766 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLA----------LIYGHNLFVNASFKHALQEYMR-----------A 766 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccee----------eeechhHhhccchHHHHHHHHH-----------H
Confidence 11 2222223333334444444566667766 4444 7788899999999999999999 9
Q ss_pred HHhCCchHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 578 IKQNPLLAEAYSNLGNVYKERG----------QLQEALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTA 645 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 645 (904)
...+|++|-.-..+|..+..+. ..-+++..+.+..++... .-++.+|+|.+|...|-..-|+.+|+++
T Consensus 767 ~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999987777777664332 234566666666655433 6789999999999999999999999999
Q ss_pred HhhChhhHHHhhhcC-cchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 646 LQYNPSCYLKAIETR-PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 646 l~~~~~~~~~~l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
|...|-....--..+ .-.-.+-+||..+|...|+...|...+.+-+
T Consensus 847 L~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 847 LEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 988763221100000 1124678999999999999999999988754
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=199.19 Aligned_cols=509 Identities=17% Similarity=0.197 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQ------------ETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 69 (904)
...++....+.-..|++.+|++-...+=+. -|. ...+++.++.-|.....+.+|+..|+-.+
T Consensus 149 v~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiiv 228 (840)
T KOG2003|consen 149 VMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIV 228 (840)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhh
Confidence 344566666667788888888766554111 122 24578889999998999999999999887
Q ss_pred h--cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 70 K--QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 70 ~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
+ ..|+....-.++|.++++..+|.+|+.+|+-++..-|.. ...+.++|..+.+.|.|+.|+..|+.+.+..|+
T Consensus 229 knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn 308 (840)
T KOG2003|consen 229 KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPN 308 (840)
T ss_pred cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCcc
Confidence 6 467777788899999999999999999999999887764 457888999999999999999999999999997
Q ss_pred hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhH-----HHHHHcCCH-HHHHHHHhhcCCCcchhhHHHHHHhh-cCCCcc
Q psy17306 143 LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG-----NLLKALGRL-DEAKNLHTENIKPVTMKVQNAIVCNY-GGRKPT 215 (904)
Q Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~-----~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 215 (904)
.. +-++|..+++..|+-++-.+.|..+..+- .-|.+..+- +. .++.++++ ...+..+ ..+...
T Consensus 309 ~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~--~ll~eai~-------nd~lk~~ek~~ka~ 378 (840)
T KOG2003|consen 309 FI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD--NLLNEAIK-------NDHLKNMEKENKAD 378 (840)
T ss_pred HH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch--HHHHHHHh-------hHHHHHHHHhhhhh
Confidence 65 44566778888888877777663333221 001110000 00 00000000 0011111 112223
Q ss_pred hHHHhhHHHHHh--hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 216 TLESAHFSTLAI--KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 216 ~~~a~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
..+++....+.+ -+.|+.+..+-+.-.+. +|..+. |-..+.-.+.+-.+.++|+++.|++.+.-
T Consensus 379 aek~i~ta~kiiapvi~~~fa~g~dwcle~l-------k~s~~~-------~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 379 AEKAIITAAKIIAPVIAPDFAAGCDWCLESL-------KASQHA-------ELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred HHHHHHHHHHHhccccccchhcccHHHHHHH-------HHhhhh-------hhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 333333222222 12222221111111111 111111 12223445667788999999999998876
Q ss_pred HHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcc
Q psy17306 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGS 373 (904)
Q Consensus 294 al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (904)
.-+.+..... .
T Consensus 445 ~~~kdnk~~s---------------------------------------------------------------------a 455 (840)
T KOG2003|consen 445 FEKKDNKTAS---------------------------------------------------------------------A 455 (840)
T ss_pred HHhccchhhH---------------------------------------------------------------------H
Confidence 6554443300 0
Q ss_pred hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccc
Q psy17306 374 VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLS 453 (904)
Q Consensus 374 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~ 453 (904)
.-.++..+++..|-
T Consensus 456 aa~nl~~l~flqgg------------------------------------------------------------------ 469 (840)
T KOG2003|consen 456 AANNLCALRFLQGG------------------------------------------------------------------ 469 (840)
T ss_pred HhhhhHHHHHHhcc------------------------------------------------------------------
Confidence 00011111111111
Q ss_pred cccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchH
Q psy17306 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYV 533 (904)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (904)
.+..++..|.+. ++..+.-++..
T Consensus 470 -----------------------------------------------------k~~~~aqqyad~---aln~dryn~~a- 492 (840)
T KOG2003|consen 470 -----------------------------------------------------KDFADAQQYADI---ALNIDRYNAAA- 492 (840)
T ss_pred -----------------------------------------------------cchhHHHHHHHH---HhcccccCHHH-
Confidence 011111111111 11122222222
Q ss_pred HHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 534 AAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 613 (904)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (904)
..+.|.+.+..|++++|.+.|++ ++..+..+..+++++|..+..+|+.++|+++|-+.-.
T Consensus 493 ---------~~nkgn~~f~ngd~dka~~~yke-----------al~ndasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 493 ---------LTNKGNIAFANGDLDKAAEFYKE-----------ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred ---------hhcCCceeeecCcHHHHHHHHHH-----------HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 37889999999999999999999 9999999999999999999999999999999999988
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+--++...++.++.+|..+.+..+|++ .+.++..+-|++|.++..||.+|-+.|+-.+|..++-.....
T Consensus 553 il~nn~evl~qianiye~led~aqaie-----------~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 553 ILLNNAEVLVQIANIYELLEDPAQAIE-----------LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred HHHhhHHHHHHHHHHHHHhhCHHHHHH-----------HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 888899999999999999999999999 777888899999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFT 764 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 764 (904)
.|-+.+....||..|....-+++|+.+|+++.-+.|+.......++.|..+++.+.++++.+... -++|+
T Consensus 622 fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfp 691 (840)
T KOG2003|consen 622 FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFP 691 (840)
T ss_pred cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999988776 45554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=215.85 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLA 117 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 117 (904)
....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44566678888888999999999999999999888889999999999999999999999888754322 24678889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------------------ 164 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA------------------------------ 164 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH------------------------------
Confidence 99999999999999999999888888888888888888888888888777
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 272 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 272 (904)
.+++...|.. ...+..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 165 --------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 218 (389)
T PRK11788 165 --------------------------ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI 218 (389)
T ss_pred --------------------------HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence 2333333322 345678999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 273 NLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|.++...|++++|+..+++++...|.+
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 99999999999999999999999877654
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=185.15 Aligned_cols=220 Identities=20% Similarity=0.264 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
+|.+++-.+.+|.-++..|++..|+..|..+++.+|++..+++.+|.+|+.+|+-.-|+..+.+++++.|+...+.+..|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
.+++++|.+++|...|+.++..+|++. ++...++.+-.... .......+...|+...|+.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~-----------l~~ql~s~~~~GD~~~ai~~i~--- 179 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV-----------LVQQLKSASGSGDCQNAIEMIT--- 179 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH-----------HHHHHHHHhcCCchhhHHHHHH---
Confidence 999999999999999999999999653 33333333222211 1222233445667777766664
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
..+++.|-++..+...+.+|...|+...|+.-++.+-++..++.+.++.+
T Consensus 180 ------------------------------~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 180 ------------------------------HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred ------------------------------HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.+++..|+.+.++...+.+++++|++
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 999999999999999999999999998
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=214.34 Aligned_cols=238 Identities=17% Similarity=0.157 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLG 83 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la 83 (904)
....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3456677999999999999999999999999999999999999999999999999999999885432 236789999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh-----HHHHHHHHHHHcC
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC-----VRSDLGNLLKALG 158 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~~ 158 (904)
.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|.+.. .+..+|.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998876532 3456666777777
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (904)
++++|+..+ .+++...|+...++.
T Consensus 195 ~~~~A~~~~--------------------------------------------------------~~al~~~p~~~~~~~ 218 (389)
T PRK11788 195 DLDAARALL--------------------------------------------------------KKALAADPQCVRASI 218 (389)
T ss_pred CHHHHHHHH--------------------------------------------------------HHHHhHCcCCHHHHH
Confidence 777776666 577778888899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 239 NLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 239 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|.++...|++++|+..|++++..+|.+ ..++..++.++...|++++|+..++++++..|+.
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999998876 4567889999999999999999999998887755
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-20 Score=222.26 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=146.0
Q ss_pred HHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHH
Q psy17306 499 LNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAI 578 (904)
Q Consensus 499 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al 578 (904)
+-..|...++.+.+...++. . +.+.. +|+.+...|...|+.++|+..|++ ..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~---~----~~d~~----------s~n~lI~~~~~~G~~~~A~~lf~~-----------M~ 581 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNS---H----EKDVV----------SWNILLTGYVAHGKGSMAVELFNR-----------MV 581 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHh---c----CCChh----------hHHHHHHHHHHcCCHHHHHHHHHH-----------HH
Confidence 44455555666665555433 2 22222 458888899999999999999998 55
Q ss_pred Hh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhH
Q psy17306 579 KQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCY 653 (904)
Q Consensus 579 ~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 653 (904)
+. .|+ ..++..+-..+.+.|.+++|...|+.+.+. .|+ ...|..+..++.+.|++++|.+.++
T Consensus 582 ~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~---------- 649 (857)
T PLN03077 582 ESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFIN---------- 649 (857)
T ss_pred HcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHH----------
Confidence 43 454 445666667788999999999999999854 344 5789999999999999999999544
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 654 LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 654 ~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
+. ...|+ +.+|..|-..+...|+.+.|....+++++++|+++..+..++.+|...|+|++|.++.+...+...
T Consensus 650 -~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 650 -KM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred -HC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 32 24555 567888888888899999999999999999999999999999999999999999999888766543
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-20 Score=187.55 Aligned_cols=489 Identities=18% Similarity=0.182 Sum_probs=339.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
+|.-..++|..+.-.+..++|...++..+.+++..|.+++.+...|..+...|+-++|..+.+.++..++....+|..+|
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 55667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++...++|++|+.+|+.|+.+.|++...+..++....++++++.......+.++..|..-..|...+..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-------------------hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 164 KDLYCVRSD-------------------LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 164 ~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
...++.... ........|.+++|++.+..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-------------------------------- 210 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-------------------------------- 210 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh--------------------------------
Confidence 888732211 12333344444444443321
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV-QAYVTALQYNPLLKK 303 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 303 (904)
.-..--+........|.++..++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-+..|...
T Consensus 211 -~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e- 288 (700)
T KOG1156|consen 211 -NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE- 288 (700)
T ss_pred -hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-
Confidence 111111223455567899999999999999999999999999999988888886333344444 55555555555441
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
........++.++.............+...+..+...+..++....+..
T Consensus 289 -~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~------------------------------ 337 (700)
T KOG1156|consen 289 -CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA------------------------------ 337 (700)
T ss_pred -cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH------------------------------
Confidence 1111111111112222222222222222222222222222111111100
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+ ++.-+..|...+.-
T Consensus 338 ------------------------------~---le~Lvt~y~~~L~~-------------------------------- 352 (700)
T KOG1156|consen 338 ------------------------------F---LEKLVTSYQHSLSG-------------------------------- 352 (700)
T ss_pred ------------------------------H---HHHHHHHHHhhccc--------------------------------
Confidence 0 00001111111100
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.-..++.+....+-...+.+.+
T Consensus 353 ----------------------------------------------------------~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 353 ----------------------------------------------------------TGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred ----------------------------------------------------------ccCCCcccccccCCchHHHHHH
Confidence 0000000000000001123466
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..++..+...|+++.|..+... ++...|..++.+...|+++...|+.++|...+..+.+++-.+...-.
T Consensus 375 y~laqh~D~~g~~~~A~~yId~-----------AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDL-----------AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHH-----------HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 8888999999999999999999 99999999999999999999999999999999999999866655555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN--LGCVFNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~~~p 695 (904)
.-|.-..+.++.++|.+...+--...-+ ++..=.+.--.|+. -|.+|.++|++..|++-|..+-....
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~----~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFG----AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccc----hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6788888999999999955532221100 00000001113333 47889999999999988887766633
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=247.58 Aligned_cols=174 Identities=40% Similarity=0.711 Sum_probs=143.1
Q ss_pred HHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhhhh----ccCCCccc
Q psy17306 717 ANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQ----KIVPIGHW 792 (904)
Q Consensus 717 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~~~----~~~~~~~w 792 (904)
|..+| +..+..++++++..++.+.+.++.+++.+++.++..++ .|+++ ...++|.|.|++|...+ +......|
T Consensus 644 a~~~f-~~~~~~~~~~did~il~~~~~~~~~~~~~~~~~~~~~~-~f~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 720 (1033)
T PLN03142 644 AEMVF-SSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAI-KFKMD-DTAELYDFDDEDDKDENKLDFKKIVSDNW 720 (1033)
T ss_pred hHHhh-hccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHhchhhh-ccccc-CCcceeeecCccccchhhhhHhhhccccc
Confidence 34444 33345678999999999999999999999999998877 58775 35689999999887643 11122359
Q ss_pred cCCchhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCC-chhHhHHHHHHHHHHhhcCccCCCCCCCCcc
Q psy17306 793 IEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFP-PRLFEILDQEIYYFRKTVGYKVPKNPELGSD 871 (904)
Q Consensus 793 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 871 (904)
|+|++|||+.+|+||.||+++|+++.++.|++||+||+++|+|||||| +||.||+|+|++||.+.+ .+ ++.
T Consensus 721 ~~~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~-----~~---~~~ 792 (1033)
T PLN03142 721 IDPPKRERKRNYSESEYFKQAMRQGAPAKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAH-----QK---GQL 792 (1033)
T ss_pred cccchhhhhcccchhHHHHHHHhcCCcccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccc-----cC---Cch
Confidence 999999999999999999999998778889999999999999999999 599999999999997643 22 112
Q ss_pred hHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 872 ATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
.. .+ .+|++||+++|||+||+++|++|+++
T Consensus 793 ~~-~~-~~~~~~~~~~~lt~~e~~~k~~l~~~ 822 (1033)
T PLN03142 793 KD-TI-DVAEPEEPGDPLTAEEQEEKEQLLEE 822 (1033)
T ss_pred hh-hh-hhccccccCCCCCHHHHHHHHHHHhc
Confidence 11 22 37999999999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-20 Score=216.06 Aligned_cols=449 Identities=14% Similarity=0.084 Sum_probs=349.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQET--NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNV 85 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 85 (904)
.+......+...|++++|+..|+.+....| .+...+..+...+...++++.|..++..+.+. .| +..++..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 455566778889999999999999876543 35678888889999999999999999988774 45 47888999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHcCChHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~ 164 (904)
|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999998753 3 4678999999999999999999999999876432 3456677777888889888888
Q ss_pred HHHH------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 165 DLYC------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 165 ~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
.++. .+..+...|.+.|++++|..+|++. .+.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m------------------------------------~~~ 288 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------------------------------------PEK 288 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC------------------------------------CCC
Confidence 7762 3455677888888888888888632 223
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCc
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEP 311 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 311 (904)
+..+|..+...|.+.|++++|+..|++..... .-+..++..+..++.+.|++++|.+.+..+++......
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d--------- 359 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--------- 359 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC---------
Confidence 46778888888888888888888888876643 22456788888888888888888888888877542220
Q ss_pred ccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccccc
Q psy17306 312 FVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEP 391 (904)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 391 (904)
..+...+.+.|...|.
T Consensus 360 ------------------------------------------------------------~~~~~~Li~~y~k~G~---- 375 (697)
T PLN03081 360 ------------------------------------------------------------IVANTALVDLYSKWGR---- 375 (697)
T ss_pred ------------------------------------------------------------eeehHHHHHHHHHCCC----
Confidence 0122333333333333
Q ss_pred CCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 392 NGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
++.|...|+++...
T Consensus 376 --------------------------~~~A~~vf~~m~~~---------------------------------------- 389 (697)
T PLN03081 376 --------------------------MEDARNVFDRMPRK---------------------------------------- 389 (697)
T ss_pred --------------------------HHHHHHHHHhCCCC----------------------------------------
Confidence 45555555543211
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR 551 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (904)
+. .+|+.+...|.
T Consensus 390 ---------------------------------------------------------d~----------~t~n~lI~~y~ 402 (697)
T PLN03081 390 ---------------------------------------------------------NL----------ISWNALIAGYG 402 (697)
T ss_pred ---------------------------------------------------------Ce----------eeHHHHHHHHH
Confidence 11 13588888999
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAA 627 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~ 627 (904)
..|+.++|++.|++ .... .|+ ..++..+...+...|..++|.+.|+.+.+..+ .+...|..+..
T Consensus 403 ~~G~~~~A~~lf~~-----------M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 403 NHGRGTKAVEMFER-----------MIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred HcCCHHHHHHHHHH-----------HHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 99999999999999 5443 454 56788888899999999999999999986432 23568999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
++.+.|++++|.+.++ +. ...|+ ...|..+...+...|+.+.|...+++.+++.|++...|..++.+
T Consensus 471 ~l~r~G~~~eA~~~~~-----------~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 471 LLGREGLLDEAYAMIR-----------RA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred HHHhcCCHHHHHHHHH-----------HC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 9999999999999443 32 23454 46799999999999999999999999999999999999999999
Q ss_pred HHHhcchhHHHHHHHHhhcccC
Q psy17306 708 LKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 708 ~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
|...|++++|.++++...+...
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998876653
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=208.68 Aligned_cols=551 Identities=14% Similarity=0.088 Sum_probs=356.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--------------------cHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL--------------------LAEAYSN 81 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------~~~~~~~ 81 (904)
+....|..+|+.++..+|.+ ....|.+......|..|...+......+-+ -....+.
T Consensus 382 ~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~ 458 (1238)
T KOG1127|consen 382 SILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLEC 458 (1238)
T ss_pred HHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHH
Confidence 33445566666666666654 444555555566666666665555544311 1111111
Q ss_pred HHHHH-----HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 82 LGNVY-----KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 82 la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
.+..+ +..++...|+..|-++++++|..+.++..+|.+|....+...|.++|.+|.++|+.+..+.-..+..|..
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence 11111 2345578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHH-------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 157 LGRLDEAKDLY-------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 157 ~~~~~~A~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...++.|.... ..|...|..|...++...|+..+
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f--------------------------------- 585 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF--------------------------------- 585 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH---------------------------------
Confidence 99999998876 24445666666666666666666
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+..+.+..+.+...+|+|.+|+..+...+.......
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~- 664 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER- 664 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-
Confidence 4888999999999999999999999999999999999999999999999999999999999999999999887554330
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
. ....++.++.
T Consensus 665 -~--------------------------------------------------------------------~q~gLaE~~i 675 (1238)
T KOG1127|consen 665 -T--------------------------------------------------------------------GQNGLAESVI 675 (1238)
T ss_pred -H--------------------------------------------------------------------hhhhHHHHHH
Confidence 0 0001111111
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhh------cccCccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSR------WRYPSLSLHGI 457 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~------~~y~~~~~~~~ 457 (904)
.+.......|-.. .-..-++.+++.|.-++.+...... -....++. +.-.++.-..+
T Consensus 676 r~akd~~~~gf~~----------------kavd~~eksie~f~~~l~h~~~~~~-~~Wi~asdac~~f~q~e~~~vn~h~ 738 (1238)
T KOG1127|consen 676 RDAKDSAITGFQK----------------KAVDFFEKSIESFIVSLIHSLQSDR-LQWIVASDACYIFSQEEPSIVNMHY 738 (1238)
T ss_pred HHHHHHHHHHHhh----------------hhhHHHHHHHHHHHHHHHHhhhhhH-HHHHHHhHHHHHHHHhcccchHHHH
Confidence 1111110000000 0000022222222222221000000 00000000 00000000000
Q ss_pred cccccC----CCCccccc------CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCC
Q psy17306 458 EGAFSG----PGGKTVIP------GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP 527 (904)
Q Consensus 458 ~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 527 (904)
..++.+ .+...... ......+.+... ..+.-.-...++........-......++..+.+++++..
T Consensus 739 l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~----~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a 814 (1238)
T KOG1127|consen 739 LIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH----MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA 814 (1238)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc----cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Confidence 011100 00000000 000000011111 1111111222233233333333334577788888889988
Q ss_pred CCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 528 EHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 607 (904)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 607 (904)
++...| +.+|.+ ...|.+.-|.-.|-+ .+...|.+...|.|+|.++....+++-|...
T Consensus 815 nn~~~W----------naLGVl-sg~gnva~aQHCfIk-----------s~~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 815 NNEGLW----------NALGVL-SGIGNVACAQHCFIK-----------SRFSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred ccHHHH----------HHHHHh-hccchhhhhhhhhhh-----------hhhccccchhheeccceeEEecccHHHhhHH
Confidence 888888 777877 555777777777777 8889999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhhChh----------------------------------
Q psy17306 608 YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT--ALQYNPS---------------------------------- 651 (904)
Q Consensus 608 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~--al~~~~~---------------------------------- 651 (904)
|.++..++|.+...|...+.+....|+.-++...|.. .+.+...
T Consensus 873 f~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 9999999999999999999999999988888887766 2322210
Q ss_pred --hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 652 --CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 652 --~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
...+.+..+|+...++...|....+++.+..|.+.+.+.+.+ ...++.+--+.|++++..|+++.|...+
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 345566679999999999999999999999999999998776 2233446677777877777777665544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-19 Score=210.04 Aligned_cols=281 Identities=13% Similarity=0.054 Sum_probs=189.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 88 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 88 (904)
+......+...|++++|...|....... +.+...+..+...+...+..+.|...+..+++..+. +......+-..|.+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 4556677889999999999999887742 345556666667777788888888888888776543 34455666677788
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC------------------------
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--NPD------------------------ 142 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------------------------ 142 (904)
.|+.+.|...|++.. +.+..+|..+...|.+.|++++|+..|.++... .|+
T Consensus 134 ~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 134 FGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 888888888887754 335667888888888888888888888887642 343
Q ss_pred ----------hhhHHHHHHHHHHHcCChHHHHHHHH--------HHHhhHHHHHHcCCHHHHHHHHhhcCCC--cchhhH
Q psy17306 143 ----------LYCVRSDLGNLLKALGRLDEAKDLYC--------VRSDLGNLLKALGRLDEAKNLHTENIKP--VTMKVQ 202 (904)
Q Consensus 143 ----------~~~~~~~la~~~~~~~~~~~A~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 202 (904)
+...+..+...|.+.|++++|..+|+ .+..+...|.+.|++++|+.++.+.... .+....
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 22345566677777888888888773 5667777788888888888888764321 111111
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 281 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (904)
...+..-.........+.+.+....+.. +.+..++..+...|.+.|++++|...|++... .+..+|..+...|.+.
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhC
Confidence 1111111112223333333333333221 22466777888888888888888888887532 3456788888888888
Q ss_pred CCHHHHHHHHHHHHhh
Q psy17306 282 GDMEQAVQAYVTALQY 297 (904)
Q Consensus 282 g~~~~A~~~~~~al~~ 297 (904)
|++++|++.|++..+.
T Consensus 368 g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 368 GLPDKALETYALMEQD 383 (857)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888877554
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-20 Score=195.47 Aligned_cols=139 Identities=28% Similarity=0.313 Sum_probs=111.7
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+|...+..+...+..++|..++.+ +-..+|..+..|+..|.++...|++.+|.+.|..++.++|+++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~E-----------a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLE-----------ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHH-----------HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 4557777888888888888888887 77888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
+...+|.++...|+..-|.. ...+..+++.+|.++++|+.+|.++.++|+.++|.++|+-|+++++.+|.
T Consensus 720 s~~Ala~~lle~G~~~la~~---------~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEK---------RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHhCCcchHHH---------HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 88888888888886554444 00455666788888888888888888888888888888888888776653
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-20 Score=177.77 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|.-..-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|+..|+-.-|+.-+.+++++.|+...+...+|.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFI---DGYI------------NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
+++++|.+++|...|.+++..+|++. ++.. .....+...|+...|+......+++.|-+...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999999999999652 2222 22334556799999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc
Q psy17306 150 LGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 229 (904)
.+.+|...|....|+..+ ..+.++
T Consensus 195 Rakc~i~~~e~k~AI~Dl--------------------------------------------------------k~askL 218 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDL--------------------------------------------------------KQASKL 218 (504)
T ss_pred HHHHHHhcCcHHHHHHHH--------------------------------------------------------HHHHhc
Confidence 999999999999998887 566777
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 271 (904)
..++.+.++.++.+++..|+.+.++...+..++++|++-..+
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 888899999999999999999999999999999999976543
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-19 Score=188.97 Aligned_cols=549 Identities=14% Similarity=0.156 Sum_probs=351.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--cHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL--LAEAYSNL 82 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 82 (904)
+.++.++-.+|.+|....+...|..+|+++.+.||.++++.-..+..|.+..+++.|....-.+-+..|- ....|..+
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 3456666667777766667777777777777777777777777777777777777777665555555543 23456668
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
|..|...++...|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.++..++|.+.-..+..+.+.+..|.|.+
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH------------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH-----HH--------HhhcC
Q psy17306 163 AKDLY------------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-----IV--------CNYGG 211 (904)
Q Consensus 163 A~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~--------~~~~~ 211 (904)
|+..+ +....++..+...|-..+|...+++.+.......... .. ..+..
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 99888 2333444445555656666666665443211110000 00 00000
Q ss_pred CCcc-------------------------hHHHhhHHHHHhhcCchhHHHHHHHHHHHHH--------hCCHHHHHHHHH
Q psy17306 212 RKPT-------------------------TLESAHFSTLAIKQNPLLAEAYSNLGNVYKE--------RGQLQEALENYR 258 (904)
Q Consensus 212 ~~~~-------------------------~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~g~~~~A~~~~~ 258 (904)
...+ ..-+.+++-..+..- ..+..|+++|..|++ ..+...|+.++.
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 0000 000111111111111 125678888888776 223347888899
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccch
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGL 338 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (904)
+++++..++...|..||.+ ...|++.-|..+|-+.+...|.. ...|
T Consensus 808 kaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~--~~~W------------------------------- 853 (1238)
T KOG1127|consen 808 KAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTC--HCQW------------------------------- 853 (1238)
T ss_pred HHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccc--hhhe-------------------------------
Confidence 9999888888889888887 55588888888888888888877 2333
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHH
Q psy17306 339 ASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKI 418 (904)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (904)
.++|.+.-...+ +
T Consensus 854 --------------------------------------------~NlgvL~l~n~d-----------------------~ 866 (1238)
T KOG1127|consen 854 --------------------------------------------LNLGVLVLENQD-----------------------F 866 (1238)
T ss_pred --------------------------------------------eccceeEEeccc-----------------------H
Confidence 333333322211 5
Q ss_pred hhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHH
Q psy17306 419 DFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLD 497 (904)
Q Consensus 419 ~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (904)
+.|-..|.++..+ |.+... + +|.++ ...
T Consensus 867 E~A~~af~~~qSLdP~nl~~-----------W-------lG~Al---------------------------------i~e 895 (1238)
T KOG1127|consen 867 EHAEPAFSSVQSLDPLNLVQ-----------W-------LGEAL---------------------------------IPE 895 (1238)
T ss_pred HHhhHHHHhhhhcCchhhHH-----------H-------HHHHH---------------------------------hHH
Confidence 5566666666666 544432 0 00000 000
Q ss_pred HHHHHHHHhcChhHHHHHHHhccccccc---CCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRT---NPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFS 574 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~ 574 (904)
. .++....+..+.-.... ...-+... -|..-.......|++++-+...++. ..|.-..
T Consensus 896 a----------vG~ii~~~~lfaHs~el~~~~gka~~f~--------Yw~c~te~h~~Ng~~e~~I~t~~ki-~sAs~al 956 (1238)
T KOG1127|consen 896 A----------VGRIIERLILFAHSDELCSKEGKAKKFQ--------YWLCATEIHLQNGNIEESINTARKI-SSASLAL 956 (1238)
T ss_pred H----------HHHHHHHHHHHHhhHHhhccccccchhh--------HHHHHHHHHHhccchHHHHHHhhhh-hhhHHHH
Confidence 0 01111111111110000 11111111 2244455566677777777666652 2223333
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 575 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
.+.+..+|+...++...|.....++.+..|.+.+.+++.+ ...+..+--+.|.+++..|.++.|...+...
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~--- 1033 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE--- 1033 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc---
Confidence 4467789999999999999999999999999999998865 2334457788999999999999887732210
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc---HHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---LDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
....+.-. .......+-.++++++.+.|++|+.+..+. +......+.+....+..+.|...+-++.
T Consensus 1034 ---------~~evdEdi--~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1034 ---------WMEVDEDI--RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred ---------chhHHHHH--hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 00000001 111222266899999999999999995443 4566777788888889999999888888
Q ss_pred cccCChhhHHHHHH
Q psy17306 726 YFMITDEDIDVILE 739 (904)
Q Consensus 726 ~~~~~~~~~~~~l~ 739 (904)
...+.+......+.
T Consensus 1103 ~ls~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1103 SLSKVQASSLLPLP 1116 (1238)
T ss_pred HhCccchhhHHHHH
Confidence 77665444444433
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-19 Score=185.77 Aligned_cols=436 Identities=19% Similarity=0.170 Sum_probs=312.4
Q ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CChhhHHHHHH
Q psy17306 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN--PDLYCVRSDLG 151 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 151 (904)
+++..|-.+...+...|++..+.+.|++++...-...+.|+.++.++...|.-..|+..++..+... |+++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5677888899999999999999999999998877788899999999999999999999999999988 77776666665
Q ss_pred HHH-HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC----------CCcchHHHh
Q psy17306 152 NLL-KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG----------RKPTTLESA 220 (904)
Q Consensus 152 ~~~-~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~a~ 220 (904)
.++ .+.+..++++.+. .+|+..+........+.....+...+.. +.....+++
T Consensus 401 klc~e~l~~~eegldYA----------------~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYA----------------QKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred HHHHhchhhhhhHHHHH----------------HHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 554 4567788888777 3333333222222222222222222211 112234667
Q ss_pred hHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
..++++++.+|.++.+.+.++.-|..+++.+.|..+.++++++ ..+++.+|..++.++...+++.+|+...+.++...|
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 8889999999999999999999999999999999999999999 567789999999999999999999999999999999
Q ss_pred CcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHH
Q psy17306 300 LLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMT 379 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
++..-- + +.++.
T Consensus 545 ~N~~l~--------------------------------------~---------------------------~~~~i--- 556 (799)
T KOG4162|consen 545 DNHVLM--------------------------------------D---------------------------GKIHI--- 556 (799)
T ss_pred hhhhhc--------------------------------------h---------------------------hhhhh---
Confidence 871100 0 00000
Q ss_pred HHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccc
Q psy17306 380 DLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEG 459 (904)
Q Consensus 380 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~ 459 (904)
....+..++++......+.
T Consensus 557 --------------------------------~~~~~~~e~~l~t~~~~L~----------------------------- 575 (799)
T KOG4162|consen 557 --------------------------------ELTFNDREEALDTCIHKLA----------------------------- 575 (799)
T ss_pred --------------------------------hhhcccHHHHHHHHHHHHH-----------------------------
Confidence 0000112222222222222
Q ss_pred cccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHH
Q psy17306 460 AFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARAT 539 (904)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (904)
+|......... ++ -
T Consensus 576 ------------------------------------------~we~~~~~q~~---~~---------------------~ 589 (799)
T KOG4162|consen 576 ------------------------------------------LWEAEYGVQQT---LD---------------------E 589 (799)
T ss_pred ------------------------------------------HHHhhhhHhhh---hh---------------------h
Confidence 22211100000 00 0
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHH----------HHHhCCch-----HHHHHHHHHHHHHcCCHHHH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTL----------AIKQNPLL-----AEAYSNLGNVYKERGQLQEA 604 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~----------al~~~p~~-----~~~~~~lg~~~~~~g~~~~A 604 (904)
+......+......++..+|+..++.....+..-... .....|.. ...|...|..+...++.++|
T Consensus 590 g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 590 GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 0001122222222233333333333322211100000 01112221 34788899999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHH
Q psy17306 605 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 605 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
..++.++-.+.|..+..|+..|.++...|++.+|.+ .|..++.++|+++.+...+|.++...|+...|.
T Consensus 670 ~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~-----------af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 670 RSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE-----------AFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH-----------HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 999999999999999999999999999999999999 888888899999999999999999999988888
Q ss_pred H--HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 685 H--HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 685 ~--~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
. .+..++++||.++++|+.+|.++..+|+.++|.++|..++....++
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8 9999999999999999999999999999999999999998876543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=195.36 Aligned_cols=253 Identities=14% Similarity=0.103 Sum_probs=174.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
++..-..+.+.|++++|+++|+.+...+.- +...+..+...+...|..++|..+++.... | +..+|..+-.++..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 344445566889999999999998776532 334444556677788999999999887654 4 46788888888999
Q ss_pred hCcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKP-DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
.|++++|...|.++.+... .+...+..+..+|.+.|+.++|.+.|+++.+... .+...|..+...|.+.|++++|..+
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999888653 3467888999999999999999999999987643 2577888999999999999999888
Q ss_pred HH------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 167 YC------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 167 ~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
|. .+..+...+.+.|++++|..++.+... ......|+ .
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~-----------------------------~~~gi~PD-~ 579 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA-----------------------------ETHPIDPD-H 579 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------------hcCCCCCc-H
Confidence 82 344455555555666666555542110 00112232 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
..+..+...|.+.|++++|...|+.+.+.+ +.+...|..+...|.+.|++++|+..|.++.+
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455555556666666666666666655543 33445566666666666666666666665554
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-18 Score=168.31 Aligned_cols=384 Identities=16% Similarity=0.102 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---------------
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN--------------- 72 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------- 72 (904)
...-...+..+...|+-+.|+.......... ..+.+...++..+...++-.++.-.+...+...
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4455677888888899999888766553221 235566666666666555444444444433322
Q ss_pred ----------------cccHHH---HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 73 ----------------PLLAEA---YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133 (904)
Q Consensus 73 ----------------p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 133 (904)
|..++. ....+.++....-+..+..++-.-...-|++...+..+|.|++..|++++|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 222221 1233444444444555556666666677888888888999999999999999999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCC
Q psy17306 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRK 213 (904)
Q Consensus 134 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (904)
+++..++|.+....-..|.++...|++++-..+.
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~---------------------------------------------- 289 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM---------------------------------------------- 289 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH----------------------------------------------
Confidence 9998889988888888888888888887655444
Q ss_pred cchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 214 PTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
...+........-|+--|.+.+..+++..|+.+-++++..+|.+..++...|.++..+|+.++|+-.|+.
T Consensus 290 ----------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 290 ----------DYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred ----------HHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 2444455455667777888888889999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcc
Q psy17306 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGS 373 (904)
Q Consensus 294 al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (904)
+..+.|..-
T Consensus 360 Aq~Lap~rL----------------------------------------------------------------------- 368 (564)
T KOG1174|consen 360 AQMLAPYRL----------------------------------------------------------------------- 368 (564)
T ss_pred HHhcchhhH-----------------------------------------------------------------------
Confidence 988887550
Q ss_pred hhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccc
Q psy17306 374 VHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLS 453 (904)
Q Consensus 374 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~ 453 (904)
T Consensus 369 -------------------------------------------------------------------------------- 368 (564)
T KOG1174|consen 369 -------------------------------------------------------------------------------- 368 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchH
Q psy17306 454 LHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYV 533 (904)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 533 (904)
T Consensus 369 -------------------------------------------------------------------------------- 368 (564)
T KOG1174|consen 369 -------------------------------------------------------------------------------- 368 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHH-HHH-HHcCCHHHHHHHHHHH
Q psy17306 534 AAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLG-NVY-KERGQLQEALENYRHA 611 (904)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg-~~~-~~~g~~~~A~~~~~~a 611 (904)
.+|..+-..|...|++.+|.-.... ++..-|.++.++..+| .++ ..-.--++|.+.++++
T Consensus 369 -------~~Y~GL~hsYLA~~~~kEA~~~An~-----------~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 369 -------EIYRGLFHSYLAQKRFKEANALANW-----------TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred -------HHHHHHHHHHHhhchHHHHHHHHHH-----------HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 1223444556677888888888888 8888888888888886 333 3444568899999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 612 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 612 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+.++|....+-..++.++...|++.+++..+++.|. ..|+ ...+..||.++.....+.+|+++|..||
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----------~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----------IFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----------hccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999995555554 4443 3578889999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~ 709 (904)
.+||++..+..++-.+-.
T Consensus 499 r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 499 RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred hcCccchHHHHHHHHHHh
Confidence 999999888776655443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-17 Score=162.47 Aligned_cols=200 Identities=17% Similarity=0.116 Sum_probs=169.1
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
++..++.-..++++.+|.+.+.. ...|.++...++.++|+-.|+. ++...|..-+.|-.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~al----------ilKG~lL~~~~R~~~A~IaFR~-----------Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEAL----------ILKGRLLIALERHTQAVIAFRT-----------AQMLAPYRLEIYRG 373 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHH----------HhccHHHHhccchHHHHHHHHH-----------HHhcchhhHHHHHH
Confidence 34444455556666677666555 8899999999999999999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA-AALVAA-GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
|-.+|...|.+.+|...-+.++..-|.++.++..+| .++... .--++|.+ .+++++.++|....+..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk-----------f~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK-----------FAEKSLKINPIYTPAVN 442 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH-----------HHHhhhccCCccHHHHH
Confidence 999999999999999999999999999999998887 555443 34577888 66677778888889999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.++.++...|.++.++..+++.|...|+ ...+..||.++...+.+.+|.+.|..++.++|++......+.+.++
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 9999999999999999999999999885 4788999999999999999999999999999998877666555553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-18 Score=197.48 Aligned_cols=444 Identities=13% Similarity=0.076 Sum_probs=338.4
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAA 119 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 119 (904)
.|..+...+...|++++|+..|+.+....+ .+..++..+..++...++++.|...+..+... .| +..++..+..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLM 167 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 566777788899999999999999876532 35778888999999999999999999988875 35 47788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHH------------HhhHHHHHHcCCHHHHH
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR------------SDLGNLLKALGRLDEAK 187 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------~~l~~~~~~~g~~~~A~ 187 (904)
|.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+.+|... ..+...+...|....+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999998754 3 4667889999999999999999988322 22223333444444444
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC-chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 266 (904)
.++. ...+.. ..+..++..+...|.+.|++++|...|++.. +.
T Consensus 245 ~l~~---------------------------------~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~ 288 (697)
T PLN03081 245 QLHC---------------------------------CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK 288 (697)
T ss_pred HHHH---------------------------------HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC
Confidence 4332 222211 2246678889999999999999999998763 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhh
Q psy17306 267 FIDGYINLAAALVAAGDMEQAVQAYVTALQYN--PLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIES 344 (904)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 344 (904)
+..+|..+...|.+.|++++|+..|++..+.. |+.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~------------------------------------------- 325 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ------------------------------------------- 325 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------------------------------------------
Confidence 68899999999999999999999999987643 322
Q ss_pred hhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHH
Q psy17306 345 ISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTED 424 (904)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 424 (904)
..+..+..++..+|. ++.|.+.
T Consensus 326 ----------------------------~t~~~ll~a~~~~g~------------------------------~~~a~~i 347 (697)
T PLN03081 326 ----------------------------FTFSIMIRIFSRLAL------------------------------LEHAKQA 347 (697)
T ss_pred ----------------------------HHHHHHHHHHHhccc------------------------------hHHHHHH
Confidence 122222333333333 5566666
Q ss_pred HHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHH
Q psy17306 425 FRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWK 504 (904)
Q Consensus 425 ~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (904)
+..+++..-
T Consensus 348 ~~~m~~~g~----------------------------------------------------------------------- 356 (697)
T PLN03081 348 HAGLIRTGF----------------------------------------------------------------------- 356 (697)
T ss_pred HHHHHHhCC-----------------------------------------------------------------------
Confidence 666554400
Q ss_pred HhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch
Q psy17306 505 ARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL 584 (904)
Q Consensus 505 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~ 584 (904)
+.+. .+++.+...|.+.|++++|...|++ ..+ .+
T Consensus 357 ----------------------~~d~----------~~~~~Li~~y~k~G~~~~A~~vf~~-----------m~~---~d 390 (697)
T PLN03081 357 ----------------------PLDI----------VANTALVDLYSKWGRMEDARNVFDR-----------MPR---KN 390 (697)
T ss_pred ----------------------CCCe----------eehHHHHHHHHHCCCHHHHHHHHHh-----------CCC---CC
Confidence 0011 1247788899999999999999998 432 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
..+|..+...|...|+.++|++.|+++.+. .|+ ..++..+...+...|..++|.++|+.+.+. ....|+
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~--------~g~~p~ 461 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN--------HRIKPR 461 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh--------cCCCCC
Confidence 678999999999999999999999999875 455 677889999999999999999977755431 123343
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...|..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++..+..|++......+..++
T Consensus 462 -~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 462 -AMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred -ccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 357889999999999999999999875 3344 4667999999999999999999999999999988877888888899
Q ss_pred HHHHHHHHHHHHcCC
Q psy17306 743 AKTEELNKKFEQLGE 757 (904)
Q Consensus 743 ~~~~~~~~~~~~l~~ 757 (904)
.+.++++++.+-+..
T Consensus 539 ~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 539 NSSGRQAEAAKVVET 553 (697)
T ss_pred HhCCCHHHHHHHHHH
Confidence 888888888665443
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-17 Score=172.19 Aligned_cols=401 Identities=16% Similarity=0.098 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
-+.|+..|..+-..|-.-.+..+...++...- +.-..|..-+..+...+.++-|..+|..+++..|.....|...+.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~ 558 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 46788889999888998888888888877543 345678888888889999999999999999999998889988888
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
.-..-|..++-...+++++...|.....|...+..++..|+...|...+.++++.+|++.++|..-..+.....+++.|.
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 88888999999999999999999988899999999999999999999999999999999999998889999999999998
Q ss_pred HHH----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 165 DLY----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 165 ~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
.+| ++++..+.....+++.++|+.+++ .+++..|+..
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE---------------------------------e~lk~fp~f~ 685 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE---------------------------------EALKSFPDFH 685 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH---------------------------------HHHHhCCchH
Confidence 888 122222333333333333333332 3444444444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVL 314 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 314 (904)
..|..+|.++.+.++.+.|...|...++..|..+..|..++.+-.+.|..-.|...++++.-.+|++
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~------------- 752 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN------------- 752 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc-------------
Confidence 4444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred cHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCc
Q psy17306 315 DFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGK 394 (904)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 394 (904)
T Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T KOG0495|consen 753 -------------------------------------------------------------------------------- 752 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcc
Q psy17306 395 ILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKV 474 (904)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (904)
T Consensus 753 -------------------------------------------------------------------------------- 752 (913)
T KOG0495|consen 753 -------------------------------------------------------------------------------- 752 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcC
Q psy17306 475 VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554 (904)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 554 (904)
+..+ ......-.+.|
T Consensus 753 -------------------------------------------------------~~lw----------le~Ir~ElR~g 767 (913)
T KOG0495|consen 753 -------------------------------------------------------ALLW----------LESIRMELRAG 767 (913)
T ss_pred -------------------------------------------------------chhH----------HHHHHHHHHcC
Confidence 3333 44444555677
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 634 (904)
..+.|.....+ +++..|++...|..--...-.-++-..+ ..|++....++..+...|.++....+
T Consensus 768 n~~~a~~lmak-----------ALQecp~sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 768 NKEQAELLMAK-----------ALQECPSSGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred CHHHHHHHHHH-----------HHHhCCccchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHH
Confidence 88888888888 8888888877777665555554553333 44455556677888888888888888
Q ss_pred HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 635 ~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
+++|.+ .|.++++.+|++.++|...-..+...|.-+.-.+.|.+.....|.+...|....
T Consensus 833 ~~kar~-----------Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 833 IEKARE-----------WFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHH-----------HHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 888888 777777888888888888888888888888888888888888888877765543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-17 Score=187.93 Aligned_cols=208 Identities=11% Similarity=0.076 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
++..++..+...++ ...+..+-..+.+.|++++|+.+|+.+...+. .+...+..+...+...|..++|...|+....
T Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKRK-SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCCC-chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 34444444433333 33444444556688999999999999887643 3444555666778888999999999887654
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 105 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 105 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
| +...|..+-.++...|++++|...+.++.+... .+...+..+...|.+.|+.++|..+|
T Consensus 435 --p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf---------------- 495 (1060)
T PLN03218 435 --P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF---------------- 495 (1060)
T ss_pred --C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH----------------
Confidence 4 467888888899999999999999999987643 34677888888999999998888887
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 261 (904)
...... .| +...|..+...|.+.|++++|+..|..+.
T Consensus 496 ----------------------------------------~eM~~~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 496 ----------------------------------------HEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred ----------------------------------------HHHHHcCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 122221 22 35666677777777777777777777765
Q ss_pred hhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 262 RLK--PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 262 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
... |+ ..+|..+...+.+.|++++|.+.|.++..
T Consensus 535 ~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 535 SKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 432 33 55677777777777777777777777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=197.30 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=118.2
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.....++...++++++...+.+ +.... +.++..|..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEK-----------LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHH-----------HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHH-----------HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 4445567788999999999888 55544 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+..+++++...|+++++.+ .+.......|+++..|..+|.++..+|++++|+.+|++++..+|+++.++
T Consensus 183 ~~~l~~~li~~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEARE-----------ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHH-----------HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHHHHHHHHCCChHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 9999999999999999888 44444444577778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.++|.++...|+.++|..++++++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988753
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-21 Score=200.66 Aligned_cols=140 Identities=71% Similarity=1.100 Sum_probs=126.3
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccCCCcccccccCchhhhhhccCCCccccCCchhhhhhhcc
Q psy17306 726 YFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIGHWIEPPKRERKANYA 805 (904)
Q Consensus 726 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~w~~~~~~e~~~~~~ 805 (904)
++..++ ++..++.+...++.+.+.+...++.++++.|.+ .++|.|.|+||+.++... .|++|+++||+.+
T Consensus 654 es~~~d-Did~il~~~e~kt~e~~~~~~~~~~~~~~~~~~----~~~y~~eG~d~~ek~~~~---~wiep~krerk~~-- 723 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEEKTAELNAKEAKLGESDLRNFGM----ISVYNFEGEDYKEKQSLF---KWIEPPKRERKAN-- 723 (971)
T ss_pred ccccch-hHHHHHHhhhhhccCcchHHHhhCcchhhhcCc----ceeeccCCcchhhhhhhh---hhcCCchhhhhhh--
Confidence 334444 999999999999999999999999999999875 589999999999876543 3999999999876
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCCcchHHHHHHHHhhhhc
Q psy17306 806 VDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKIDE 885 (904)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (904)
|.||+++++.+.+ ||++|+++||||||++|+||+|+|+.||+|++ ||.+|++
T Consensus 724 -d~y~r~~l~~g~~-------~P~~~~~~d~qf~p~~L~el~~kei~~~~k~~--------------------e~~kin~ 775 (971)
T KOG0385|consen 724 -DAYFREALRVGEP-------PPKQPEVQDFQFFPKRLFELLEKEIEYYRKTI--------------------EQKKINN 775 (971)
T ss_pred -hhHHHHHHhcCCC-------CCCCccccccccCcHHHHHHHHHHHHHHHHHH--------------------HHHhccC
Confidence 8999999998544 79999999999999999999999999999997 8999999
Q ss_pred cCCCCHHHHHHHHHHhhc
Q psy17306 886 SEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~ 903 (904)
++|||.||+++|++|++|
T Consensus 776 ~~~lt~ee~~~k~~ll~~ 793 (971)
T KOG0385|consen 776 AEPLTQEEEEEKEELLSQ 793 (971)
T ss_pred CCCCCcHHHhhhhhhhhc
Confidence 999999999999999986
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=180.25 Aligned_cols=140 Identities=16% Similarity=0.031 Sum_probs=115.6
Q ss_pred HHHhCC----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 577 AIKQNP----LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY--INLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 577 al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+....| +++..+..+|..+...|++++|.+.++++++..|++.... ..........++.+.+++
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~---------- 320 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK---------- 320 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH----------
Confidence 444455 5788999999999999999999999999999999987532 223333344577888888
Q ss_pred hhHHHhhhcCcchH--HHHHHHHHHHHhCCCHHHHHHHHH--HHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 651 SCYLKAIETRPDFA--VAWSNLGCVFNAQGEIWLAIHHFE--KAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 651 ~~~~~~l~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
.++++++.+|+++ ..+..+|+++.+.|++++|.++|+ ++++.+|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 321 -~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 321 -LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777778899999 889999999999999999999999 68888897766 55999999999999999999999866
Q ss_pred cc
Q psy17306 727 FM 728 (904)
Q Consensus 727 ~~ 728 (904)
..
T Consensus 399 ~~ 400 (409)
T TIGR00540 399 LM 400 (409)
T ss_pred HH
Confidence 43
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=154.81 Aligned_cols=212 Identities=19% Similarity=0.152 Sum_probs=189.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
+....+.+.+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++..++.+.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 83 GNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
|..++.+|++++|...|++++.. .|..+.++.++|.|..+.|+.+.|...|+++++++|+++.....++..++..|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 99999999999999999999975 3556789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
..|...+ ++.....+-.+..+...
T Consensus 190 ~~Ar~~~--------------------------------------------------------~~~~~~~~~~A~sL~L~ 213 (250)
T COG3063 190 APARLYL--------------------------------------------------------ERYQQRGGAQAESLLLG 213 (250)
T ss_pred hHHHHHH--------------------------------------------------------HHHHhcccccHHHHHHH
Confidence 9998877 33444444556777777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
..+-...|+-+.|-.+=.+.....|.....
T Consensus 214 iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 214 IRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 777888899888888877777788887654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-18 Score=192.38 Aligned_cols=230 Identities=14% Similarity=0.012 Sum_probs=200.5
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHhcCcccHHH
Q psy17306 11 LLELAHREYQA---GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC---------RKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 11 l~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
++..|...+.. +++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45556554433 4578999999999999999999999999887744 34899999999999999999999
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877766776777788
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-CchhHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ-NPLLAEAY 237 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 237 (904)
++++|+..+ ++++.. .|+++..+
T Consensus 421 ~~eeA~~~~--------------------------------------------------------~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 421 GIDDAIRLG--------------------------------------------------------DELRSQHLQDNPILL 444 (553)
T ss_pred CHHHHHHHH--------------------------------------------------------HHHHHhccccCHHHH
Confidence 888887777 466655 47788899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..+|.++...|++++|...+.++....|....++..++..|...|+ +|...+++.++..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 9999999999999999999999998999999999999999998884 7777777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-17 Score=174.57 Aligned_cols=203 Identities=13% Similarity=0.025 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-DGYINLAAALV 121 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 121 (904)
......|.+.+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|+.. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34456677888889999999999999888888788888889999999999999999999988888875 46666788999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
..|+++.|...+++.++..|+++.++..++.++...|++++|...+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l---------------------------------- 210 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII---------------------------------- 210 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999998888777
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC----CCHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLA-EAYSNLGNVYKERGQLQEALENYRHAVRLKP----DFIDGYIN 273 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~ 273 (904)
.+..+. ++... .............+..+++...+.++....| +++..+..
T Consensus 211 ----------------------~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~ 268 (409)
T TIGR00540 211 ----------------------DNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA 268 (409)
T ss_pred ----------------------HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH
Confidence 222222 22221 1111222222444555666778888888777 58999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 274 LAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++..+...|++++|...++++++..|++
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999988
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-14 Score=142.90 Aligned_cols=471 Identities=12% Similarity=0.165 Sum_probs=334.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 89 (904)
.++.-|.--..++++..|..+|+++|..+..+...|...+.+-++.....-|..++++++.+-|.-...|+.....--.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 35566666677888999999999999999888999999999999999999999999999999999888999888888889
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH-
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC- 168 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~- 168 (904)
|+...|.+.|++-+...|+ ..+|......-...+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|..+|.
T Consensus 155 gNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999998887 567777777778888899999999999888875 6778888888888888888877772
Q ss_pred -------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh--
Q psy17306 169 -------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-- 233 (904)
Q Consensus 169 -------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 233 (904)
.....+..-..+..++.|..+|+ -++..-|.+
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk---------------------------------yAld~~pk~ra 279 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK---------------------------------YALDHIPKGRA 279 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHhcCcccH
Confidence 22223333444445555555554 444444433
Q ss_pred HHHHHHHHHHHHHhCC---HHHHH-----HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccccc
Q psy17306 234 AEAYSNLGNVYKERGQ---LQEAL-----ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKED 305 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~---~~~A~-----~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 305 (904)
-..+..+-..--+-|+ .++++ -.|++.+..+|.+.++|+.+-.+....|+.+.-.+.|++++...|...+..
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 1222222222222233 23333 347788888999999999999999999999999999999998877652222
Q ss_pred CCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHh
Q psy17306 306 GWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIM 385 (904)
Q Consensus 306 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (904)
.|. +.. |..+
T Consensus 360 ~W~----------------RYI------------------------------------------------------YLWi 369 (677)
T KOG1915|consen 360 YWR----------------RYI------------------------------------------------------YLWI 369 (677)
T ss_pred HHH----------------HHH------------------------------------------------------HHHH
Confidence 221 100 0000
Q ss_pred hcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCC
Q psy17306 386 GQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPG 465 (904)
Q Consensus 386 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 465 (904)
.- .+|..+
T Consensus 370 nY-----------------------------------alyeEl------------------------------------- 377 (677)
T KOG1915|consen 370 NY-----------------------------------ALYEEL------------------------------------- 377 (677)
T ss_pred HH-----------------------------------HHHHHH-------------------------------------
Confidence 00 001000
Q ss_pred CcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhh
Q psy17306 466 GKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNV 545 (904)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (904)
...+....-+.+..++.+-|...-.. +.+|..
T Consensus 378 ------------------------------------------e~ed~ertr~vyq~~l~lIPHkkFtF------aKiWlm 409 (677)
T KOG1915|consen 378 ------------------------------------------EAEDVERTRQVYQACLDLIPHKKFTF------AKIWLM 409 (677)
T ss_pred ------------------------------------------HhhhHHHHHHHHHHHHhhcCcccchH------HHHHHH
Confidence 00111112222334444555443332 467788
Q ss_pred CchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 546 EPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
.+.....+.+...|...+.. ++...|.+- ..-..-.+-.++++++.....|++-|+-.|.+..+|...
T Consensus 410 yA~feIRq~~l~~ARkiLG~-----------AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGN-----------AIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHcccHHHHHHHHH-----------HhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 89999999999999999999 999998743 333444556678999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA-VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 626 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
|.+-..+|+.+.|...|+-|++... -+.| ..|-..-..-...|.+++|...|++.|+..+... +|...
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~----------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPA----------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcc----------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 9999999999999996666554210 1112 2334444555678999999999999999987655 66666
Q ss_pred HHHHH-----Hhc-----------chhHHHHHHHHhhccc
Q psy17306 705 GNVLK-----EAR-----------IFDRANTLFYVSSYFM 728 (904)
Q Consensus 705 a~~~~-----~~g-----------~~~~A~~~~~~a~~~~ 728 (904)
|..-. ..| +...|..+|.+|....
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 66554 444 5667777887776544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=186.10 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
.+|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5577777777777777777554433 366666777777777777777777777777777766666666666666 5667
Q ss_pred CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH
Q psy17306 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA 204 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 204 (904)
++++|+..++++.+..+ ++..+..+..++...++++++...+
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l------------------------------------- 133 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELL------------------------------------- 133 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHH-------------------------------------
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHH-------------------------------------
Confidence 77777777766665543 3444555555566666666555555
Q ss_pred HHHhhcCCCcchHHHhhHHHHHhh--cCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17306 205 IVCNYGGRKPTTLESAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282 (904)
Q Consensus 205 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (904)
.++.. ..+.++..+..+|.++.+.|++++|+..|+++++.+|+++.+...++.++...|
T Consensus 134 -------------------~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 134 -------------------EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -------------------HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC
T ss_pred -------------------HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 12111 123455666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCC
Q psy17306 283 DMEQAVQAYVTALQYNP 299 (904)
Q Consensus 283 ~~~~A~~~~~~al~~~p 299 (904)
+++++...+....+..|
T Consensus 195 ~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHHHHHHHHHHHH-H
T ss_pred ChHHHHHHHHHHHHHCc
Confidence 66665555555544433
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=165.78 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=88.8
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+...|.-.++.|++..|.+.|.. +|.++|++ +..|.++|.+..++|+..+|+..++.+++++|..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yte-----------al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTE-----------ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHH-----------hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 46778888999999999999999 99999975 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
..++...|.|+..+++|++|++.|+++++...
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998888887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=171.43 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=168.5
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQET----NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566889999999996444 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~ 176 (904)
..|+++++++|++..++.++|.++...|++++|++.++++++.+|+++... ....+....+++++|+..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l--------- 188 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENL--------- 188 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHH---------
Confidence 999999999999999999999999999999999999999999999987321 1122334456677776666
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHH--H
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA--L 254 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A--~ 254 (904)
.+.....+. ..+. .+.+....|++..+ +
T Consensus 189 -----------------------------------------------~~~~~~~~~--~~~~-~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 189 -----------------------------------------------KQRYEKLDK--EQWG-WNIVEFYLGKISEETLM 218 (296)
T ss_pred -----------------------------------------------HHHHhhCCc--cccH-HHHHHHHccCCCHHHHH
Confidence 122222111 1111 24444455555333 2
Q ss_pred HHHH----HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 255 ENYR----HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 255 ~~~~----~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..+. ...++.|....+|+.+|.++...|++++|+.+|+++++.+|.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222 2234456667788888888888888888888888888888644
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=176.91 Aligned_cols=234 Identities=19% Similarity=0.250 Sum_probs=202.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
|..|..+++.|+..+|+-.|+.+++.+|.++++|..||.+....++-..|+..++++++++|+|..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHcCChHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYIN-------LAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~ 162 (904)
-.+|+.++.+-+...|........ ..........+..-.+.|-.+....| .++++...||.+|...|.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999998887654221110 00011111223445566667777777 678899999999999999998
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|+.+| +.++..+|++...|..||-
T Consensus 449 aiDcf--------------------------------------------------------~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 449 AVDCF--------------------------------------------------------EAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred HHHHH--------------------------------------------------------HHHHhcCCchHHHHHHhhH
Confidence 88888 7899999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+....+..+|+..|++|+++.|..+.+++++|.++..+|.|.+|+.+|-.+|.+.+..
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998875
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=171.17 Aligned_cols=253 Identities=19% Similarity=0.207 Sum_probs=193.3
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
+.++..+|.++++|..||.+....++-..|+..++++++++|++..++..||.+|...|.-.+|..++.+-+...|...
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~- 387 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYV- 387 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccch-
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999998887651
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
|....
T Consensus 388 ---~l~~a------------------------------------------------------------------------ 392 (579)
T KOG1125|consen 388 ---HLVSA------------------------------------------------------------------------ 392 (579)
T ss_pred ---hcccc------------------------------------------------------------------------
Confidence 00000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
..+.....
T Consensus 393 ----------------------------------------------~~~~~~~~-------------------------- 400 (579)
T KOG1125|consen 393 ----------------------------------------------GENEDFEN-------------------------- 400 (579)
T ss_pred ----------------------------------------------CccccccC--------------------------
Confidence 00000000
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCC--CCcchHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP--EHPNYVAAARATKY 541 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 541 (904)
.. ...+........+.|..+....| .+|++.
T Consensus 401 -----------------------~~----------------s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ-------- 433 (579)
T KOG1125|consen 401 -----------------------TK----------------SFLDSSHLAHIQELFLEAARQLPTKIDPDVQ-------- 433 (579)
T ss_pred -----------------------Cc----------------CCCCHHHHHHHHHHHHHHHHhCCCCCChhHH--------
Confidence 00 00011111222333445555566 567766
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+|.+|...|+|++|+.+|+. ++..+|++...|..||.++....+.++|+..|++|+++.|.+..+
T Consensus 434 --~~LGVLy~ls~efdraiDcf~~-----------AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 434 --SGLGVLYNLSGEFDRAVDCFEA-----------ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred --hhhHHHHhcchHHHHHHHHHHH-----------HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
++|||..++.+|.|.+|+++|-.+|.+.+......-...+ +-.+|-.|-.++..+++.+.+..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~-se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMA-SENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcc-hHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999888888765431111000111 23567666667777777664443
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-15 Score=153.64 Aligned_cols=478 Identities=14% Similarity=0.053 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+++..-..+...|+|++|++...+++...|++..+......+..+.++|++|+...+.-...... ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 567777788889999999999999999999999999999999999999999999655543322222 2233789999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
++..++|+.+++ ..++.+..+....|.+++++|+|++|+..|+..++.+.++.+.......+-.... -.+. .
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~~-~-- 163 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQVQ-L-- 163 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhHH-H--
Confidence 999999999998 4566667788899999999999999999999998887766544332221111000 0000 0
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHHHHHHHHHHh
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYSNLGNVYKER 247 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~ 247 (904)
.+.+...|. +.+.+++.+.++...
T Consensus 164 -------------------------------------------------------~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 164 -------------------------------------------------------LQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred -------------------------------------------------------HHhccCCCcchHHHHHHHHHHHHhc
Confidence 133344444 678899999999999
Q ss_pred CCHHHHHHHHHHHHhhC-------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcc
Q psy17306 248 GQLQEALENYRHAVRLK-------PD--------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPF 312 (904)
Q Consensus 248 g~~~~A~~~~~~al~~~-------p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 312 (904)
|+|.+|++.+++++++. .. -..+...++.++..+|+.++|...|...++.+|.+..
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~--------- 259 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP--------- 259 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch---------
Confidence 99999999999995541 11 1247788999999999999999999999999987721
Q ss_pred cccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccC
Q psy17306 313 VLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN 392 (904)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 392 (904)
..++..--.........+.....+.............. ...-.+.....++.+.+.+...
T Consensus 260 ------~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~-------------l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 260 ------SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL-------------LSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred ------HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000000000000000000000000000000000000 0000000000111111100000
Q ss_pred CcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccC
Q psy17306 393 GKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPG 472 (904)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 472 (904)
........+-...
T Consensus 320 -------------------------tnk~~q~r~~~a~------------------------------------------ 332 (652)
T KOG2376|consen 320 -------------------------TNKMDQVRELSAS------------------------------------------ 332 (652)
T ss_pred -------------------------hhhHHHHHHHHHh------------------------------------------
Confidence 0000000010111
Q ss_pred cccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhh
Q psy17306 473 KVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTRE 552 (904)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (904)
+.+..|.... .+ .........
T Consensus 333 ----------------------------------------------------lp~~~p~~~~------~~-ll~~~t~~~ 353 (652)
T KOG2376|consen 333 ----------------------------------------------------LPGMSPESLF------PI-LLQEATKVR 353 (652)
T ss_pred ----------------------------------------------------CCccCchHHH------HH-HHHHHHHHH
Confidence 1111111110 00 111111112
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYIN 624 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~ 624 (904)
...+..|.+.+.. ....+|.. ..+.+.++.+...+|+++.|++.+...+.. --..|.+-..
T Consensus 354 ~~~~~ka~e~L~~-----------~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a 422 (652)
T KOG2376|consen 354 EKKHKKAIELLLQ-----------FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA 422 (652)
T ss_pred HHHHhhhHHHHHH-----------HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH
Confidence 2245666666666 77778876 678888999999999999999999944322 1123445556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
+-.++...++.+.|...+.+++. .+.......+..-..+..++....+.|+-++|...+++.++.+|++.++...+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~----~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIK----WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHH----HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 66677888888889898888887 66665555555555667777788888999999999999999999999999999
Q ss_pred HHHHHHhcchhHHHHHH
Q psy17306 705 GNVLKEARIFDRANTLF 721 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~ 721 (904)
..+|... +.+.|..+=
T Consensus 499 V~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHhc-CHHHHHHHh
Confidence 9998765 455665553
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-16 Score=166.32 Aligned_cols=178 Identities=18% Similarity=0.218 Sum_probs=149.6
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------ 614 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 614 (904)
.++.+++.+|...|++++|..++++++++..+. .....|.-+..+.+++.++...+++++|+.++++++++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 345888888899999999999999966655441 23345667788999999999999999999999999987
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 615 --KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 615 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+|.-+..+.+||.+|..+|++++|.+.|++|+.+..+ .. ..++.....+.++|..|.+.+++.+|...|..+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~----~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE----LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh----cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 2344678999999999999999999999999985432 22 2356667889999999999999999999999999
Q ss_pred hc-------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 692 SL-------DPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 692 ~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+ +|+....+.|||.+|..+|++++|+++-.+++
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88 56667889999999999999999999987776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-17 Score=168.15 Aligned_cols=223 Identities=16% Similarity=0.067 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
..+..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+...|++++|+..|+++++.+|+++.... ...+....+++++|+..+.++....+.. .+. .+.+....|+...+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~- 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEET- 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHH-
Confidence 99999999999999999999999874222 2233456789999999998877553322 221 345555566664431
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ +.+...+ .......|..+++|+.+|.++.
T Consensus 217 ~~----------------~~~~~~~---------------------------------~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 217 LM----------------ERLKAGA---------------------------------TDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HH----------------HHHHhcC---------------------------------CCcHHHHHHHHHHHHHHHHHHH
Confidence 22 1111111 1334556777899999999999
Q ss_pred HhCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcC
Q psy17306 246 ERGQLQEALENYRHAVRLKP-DFIDGYINLAAALVAAG 282 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 282 (904)
..|++++|+.+|++++..+| +.++..+.+..+....+
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999996 66666665555544433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-17 Score=181.11 Aligned_cols=201 Identities=15% Similarity=0.020 Sum_probs=157.2
Q ss_pred HHHHHHHHHh---hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHhcCCCCHHH
Q psy17306 45 LLLLSSIHFQ---CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER---------GQLQEALENYRHAVRLKPDFIDG 112 (904)
Q Consensus 45 ~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~ 112 (904)
++..|...+. .+.+++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 4445544332 34567888888888888888888888888877643 33788888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhh
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE 192 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 192 (904)
+..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~------------------------- 395 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI------------------------- 395 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH-------------------------
Confidence 8888888888888888888888888888888888888888888888888887777
Q ss_pred cCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCCHHHH
Q psy17306 193 NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGY 271 (904)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 271 (904)
++++..+|.++..+..++.+++..|++++|+..+++++... |+++.++
T Consensus 396 -------------------------------~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 396 -------------------------------NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred -------------------------------HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHH
Confidence 67778888877766666767777888888888888887764 6777778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 272 INLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..+|.++...|++++|...+.++....|..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 888888888888888888887766555544
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=157.42 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=159.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcC---c-------ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 50 SIHFQCRKLDKSAHFSTLAIKQN---P-------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
.+++..+|...|-......++.+ | .+.+.-..+|.||+.+|.+.+|...++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 35666677777766555554431 1 13445567899999999999999999999988764 7888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
|....++..|+..+.+.+...|.+...+...++++..+++.++|.++|
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY-------------------------------- 313 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY-------------------------------- 313 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH--------------------------------
Confidence 999999999999999999999999988999999998888888888888
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+++.+|.+.++.-.+|..|+--++.+-|+.+|++.+.+...+++.+.++|.|..
T Consensus 314 ------------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 314 ------------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred ------------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 67888888888888888888888999999999999999999889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC
Q psy17306 280 AAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p 299 (904)
..++++-++..|++++....
T Consensus 370 yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred hhcchhhhHHHHHHHHhhcc
Confidence 88999988888888886544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-16 Score=165.77 Aligned_cols=288 Identities=16% Similarity=0.095 Sum_probs=229.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhcCcccHHHH-HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLL-SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAY-SNLGN 84 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~ 84 (904)
.+...+..|...+..|++++|.+...+.-+..+ ++..++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456678899999999999999988877655433 34554544 6666999999999999999999999975443 45599
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH--------HHHHHHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR--------SDLGNLLKA 156 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--------~~la~~~~~ 156 (904)
++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++... ..+......
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988766543322 222221222
Q ss_pred cCChHHHHHHH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH
Q psy17306 157 LGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225 (904)
Q Consensus 157 ~~~~~~A~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 225 (904)
..+.+.....+ .....++..+...|+.++|...+.+.++.. ............ ..++..+++...++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l-~~~~~~~al~~~e~ 319 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL-KTNNPEQLEKVLRQ 319 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc-cCCChHHHHHHHHH
Confidence 22222222222 356677999999999999999999988733 333322222222 22667788888999
Q ss_pred HhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 226 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.++.+|+++..+..+|.++...+++++|..+|+++++..|++. .+..++.++..+|+.++|..+|++++...
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999954 46789999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-16 Score=164.68 Aligned_cols=204 Identities=12% Similarity=0.022 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-YINLAAALV 121 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 121 (904)
...+..|.+.+..|++++|.+.+.+.-+..+.....+...+.+....|+++.|..++.++.+.+|+...+ ....+.++.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456677788889999999988888766543333344444666699999999999999999999998543 345599999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
..|++++|+..++++.+.+|+++.++..++.+|...|++++|...+...
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l------------------------------- 213 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM------------------------------- 213 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999998877100
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE-----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (904)
.+....++.... ++..+........+-+.....++..-...|+++.+...++.
T Consensus 214 ----------------------~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 214 ----------------------AKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred ----------------------HHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 011111222111 22222222223333444445555544556789999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p 299 (904)
.+...|+.++|...++++++..+
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~~~ 294 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKRQY 294 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999998544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.7e-17 Score=162.46 Aligned_cols=203 Identities=22% Similarity=0.231 Sum_probs=162.2
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 121 VAAGDMEQAVQAYVTALQYN--PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
...|++++|+..+++++... |.....+..+|.++...|++++|...+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------------------------------- 158 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL------------------------------- 158 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH-------------------------------
Confidence 88888888888888887643 344567777888888888888888777
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.+++..+|.++..+..+|.++...|++++|+..+++++...|.++..+..++.++
T Consensus 159 -------------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 159 -------------------------TRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred -------------------------HHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5666777777778888888888888888888888888888777788888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCC
Q psy17306 279 VAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p 299 (904)
...|+.++|..+.+.+....|
T Consensus 214 ~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHhhHHHHHHHHHHHHhhCc
Confidence 888888888888777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-14 Score=141.15 Aligned_cols=421 Identities=15% Similarity=0.117 Sum_probs=263.8
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 64 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
-|+..+..+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|...+++|+.+-|.-
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 44455555555666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 144 YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...|+....+-..+|+...|.++|
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqif-------------------------------------------------------- 164 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIF-------------------------------------------------------- 164 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHH--------------------------------------------------------
Confidence 777777777777777777777777
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
++-+...|+ ..+|......-.+.+..+.|...|++.+-.+|+ ...|...+..-.+.|+..-|...|+++++...+...
T Consensus 165 erW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 344455554 345555555555555666666666665555554 455555666666666666666666666655544310
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
. ..++.
T Consensus 243 ~--------------------------------------------------------------------------e~lfv 248 (677)
T KOG1915|consen 243 A--------------------------------------------------------------------------EILFV 248 (677)
T ss_pred H--------------------------------------------------------------------------HHHHH
Confidence 0 00000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCcccccccccccc
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFS 462 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 462 (904)
..+. ...-.+.++.|.-.|+-++.. |+....
T Consensus 249 aFA~-----------------------fEe~qkE~ERar~iykyAld~~pk~rae------------------------- 280 (677)
T KOG1915|consen 249 AFAE-----------------------FEERQKEYERARFIYKYALDHIPKGRAE------------------------- 280 (677)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHHHhcCcccHH-------------------------
Confidence 0000 001111244444445555444 332211
Q ss_pred CCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHH-----HhcccccccCCCCcchHHHHH
Q psy17306 463 GPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYL-----LDSGKSWRTNPEHPNYVAAAR 537 (904)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~ 537 (904)
.+...+...-...|+.....+++ -++...++.+|-+-+.+
T Consensus 281 -------------------------------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW---- 325 (677)
T KOG1915|consen 281 -------------------------------ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW---- 325 (677)
T ss_pred -------------------------------HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH----
Confidence 00001111111222222222222 24556777888888887
Q ss_pred HHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH---------HHHHHHHH-HHHcCCHHHHHHH
Q psy17306 538 ATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE---------AYSNLGNV-YKERGQLQEALEN 607 (904)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~---------~~~~lg~~-~~~~g~~~~A~~~ 607 (904)
...-.+-...|+.+.-.+.|++ ++...|.... .|.+.+.. -....+.+.+.+.
T Consensus 326 ------fdylrL~e~~g~~~~Ire~yEr-----------AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 326 ------FDYLRLEESVGDKDRIRETYER-----------AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred ------HHHHHHHHhcCCHHHHHHHHHH-----------HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666667778999999999999 8887775332 23332211 1356789999999
Q ss_pred HHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHH
Q psy17306 608 YRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683 (904)
Q Consensus 608 ~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A 683 (904)
|+.+|++-|.. +..|...|....++.+...|.+ .+..++...|.+ ..+-..-.+-.++++++..
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk-----------iLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK-----------ILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH-----------HHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 99999998863 5688888999999999999999 555555555543 2333334445567778888
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 684 IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 684 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
...|++-|+-.|.+..+|...|.+-..+|+.+.|..+|.-|++..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 888888888888888888888888888888888888887777654
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=156.98 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=214.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
.+.|.+|++.|-+.+|.+.++..++..|. ++.+..++.+|.+..+...|+..+...++..|.+...+...++++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 46899999999999999999999988775 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
+++|+++|+.+++.+|.+.++..-+|.-|+-.++++.|+.+|++.+++.-.+++.+.++|.|+...++++-++..|
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf---- 381 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF---- 381 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH----
Confidence 9999999999999999999998889999999999999999999999999999999999999999999998888877
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhHHHHHHHHHHHHHhC
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g 248 (904)
++++.. ....+++|+++|.+....|
T Consensus 382 ----------------------------------------------------~RAlstat~~~~aaDvWYNlg~vaV~iG 409 (478)
T KOG1129|consen 382 ----------------------------------------------------QRALSTATQPGQAADVWYNLGFVAVTIG 409 (478)
T ss_pred ----------------------------------------------------HHHHhhccCcchhhhhhhccceeEEecc
Confidence 233322 2234789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
++.-|..+|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+..
T Consensus 410 D~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 410 DFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred chHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 999999999999999999999999999999999999999999999999999884
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=144.19 Aligned_cols=205 Identities=20% Similarity=0.156 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
..+...+|.-|+..|++..|...++++++++|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 122 AAGDMEQAVQAYVTALQY--NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
.+|++++|...|++++.. .|.....+.++|.|-.+.|+++.|...|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l-------------------------------- 162 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL-------------------------------- 162 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH--------------------------------
Confidence 999999999999999874 3455688999999999999999999888
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
++++..+|+.+.....++..++..|+|..|..++++.....+-....+.....+-.
T Consensus 163 ------------------------~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak 218 (250)
T COG3063 163 ------------------------KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAK 218 (250)
T ss_pred ------------------------HHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999888888888888888999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
..|+-+.+-++=.+.-+..|..+
T Consensus 219 ~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 219 RLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999888889999873
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-16 Score=160.55 Aligned_cols=207 Identities=19% Similarity=0.198 Sum_probs=190.0
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
+.+..+..++.+|..++..|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
|.++...|++++|+..|++++... |.....+..+|.++...|++++|...+.+++..+|++..++..++.++...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999999864 556778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
++|...+ ++++...|.++..+..+
T Consensus 186 ~~A~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 209 (234)
T TIGR02521 186 KDARAYL--------------------------------------------------------ERYQQTYNQTAESLWLG 209 (234)
T ss_pred HHHHHHH--------------------------------------------------------HHHHHhCCCCHHHHHHH
Confidence 9998888 56666678888889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCC
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKP 265 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p 265 (904)
+.++...|+.++|..+.+.+....|
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999999888766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-17 Score=157.58 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=158.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---- 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 619 (904)
..-+.++...|++++|...--. .++.++.+..+++..|.++...++.+.|+..|+++|.++|++.
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~-----------ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~ 241 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAID-----------ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKS 241 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHH-----------HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHh
Confidence 5567778889999999998888 8999999999999999999999999999999999999999864
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 620 --------DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 620 --------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
..+-.-|.-.++.|++.+|.+.|..+|.++|+ ....++..|.++|.+..++|+..+|+...+.|+
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-------NKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 35667788899999999999966666666664 122357789999999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTE 746 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 746 (904)
++||....++...|.|+..+++|++|++.|+++.....+ ..+...+......+.
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998766 555555555554443
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-15 Score=152.23 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
...++..+.-.+..++|.+.++..+.+++..|..++++.+.|..+..+|+-++|..+...++..++.+..+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34566666667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
...+|++|+++|+.|+.++|+|..++..++.+..++++++.....-
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr---------------------------------- 132 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR---------------------------------- 132 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH----------------------------------
Confidence 9999999999999999999999999999999998888887665544
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---CCC-----HHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDF-----IDGYIN 273 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~ 273 (904)
...++..|.....|...+..+...|++..|....+...+.. |+. ......
T Consensus 133 ----------------------~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly 190 (700)
T KOG1156|consen 133 ----------------------NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY 190 (700)
T ss_pred ----------------------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 46778888888889999999999999999988887776654 322 223444
Q ss_pred HHHHHHHcCCHHHHHHHH
Q psy17306 274 LAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 274 la~~~~~~g~~~~A~~~~ 291 (904)
...+....|.+++|.+.+
T Consensus 191 ~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHcccHHHHHHHH
Confidence 455555666655555443
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=165.94 Aligned_cols=249 Identities=25% Similarity=0.312 Sum_probs=208.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 71 (904)
..|.....+..+|..|...|+|+.|+..++.+++. .|.-......+|.+|...+++++|+.+|++++.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34777888888999999999999999999999987 4554555666999999999999999999999975
Q ss_pred -----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 72 -----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 72 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
+|..+.++.+||.+|...|++++|..++++++++. |.-...+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778899999999999999999999999999873 33455788899999999999999999999987
Q ss_pred cC--------CChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 139 YN--------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 139 ~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
+. |.-+..+.+||.+|...|++++|.+++ .+|+...++.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~----------------k~ai~~~~~~----------------- 400 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY----------------KKAIQILREL----------------- 400 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH----------------HHHHHHHHhc-----------------
Confidence 72 233567888999999999999888888 6666665532
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCC
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~ 283 (904)
....++.....+..+|..+.+.+++.+|...|.+++.+ +|+....+.+|+.+|..+|+
T Consensus 401 ---------------~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 401 ---------------LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred ---------------ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 22335556778899999999999999999999998876 35666789999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q psy17306 284 MEQAVQAYVTALQYNP 299 (904)
Q Consensus 284 ~~~A~~~~~~al~~~p 299 (904)
+++|+++.++++....
T Consensus 466 ~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 466 YEAAEELEEKVLNARE 481 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-16 Score=156.99 Aligned_cols=242 Identities=13% Similarity=0.049 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
..++-..-.++...+.+++|+..+.+++..+|.+..+|...+.++...| ++++++..+++++..+|++..+|..++.++
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 3344333334667889999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred HHhCcH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC---hH
Q psy17306 87 KERGQL--QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR---LD 161 (904)
Q Consensus 87 ~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~ 161 (904)
...|+. ++++.++.++++.+|.+..+|..++.++...|++++|++.+.++++.+|.+..+|...+.++...+. ++
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 999874 7889999999999999999999999999999999999999999999999999999999988776532 21
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
. ..++++ .+..+++..+|++..+|..++
T Consensus 197 ~-------------------~~e~el---------------------------------~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 197 A-------------------MRDSEL---------------------------------KYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred c-------------------cHHHHH---------------------------------HHHHHHHHhCCCCcCHHHHHH
Confidence 0 001122 222588999999999999999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCC
Q psy17306 242 NVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG------------------DMEQAVQAYVTALQYNP 299 (904)
Q Consensus 242 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p 299 (904)
.++.. .++..+|+..+.+++...|.++.++..|+.++.... ..++|..++...-+.+|
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 99988 456778999999999999999999999999998643 23668888887765565
Q ss_pred Cc
Q psy17306 300 LL 301 (904)
Q Consensus 300 ~~ 301 (904)
-.
T Consensus 305 ir 306 (320)
T PLN02789 305 MR 306 (320)
T ss_pred HH
Confidence 43
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-14 Score=136.04 Aligned_cols=233 Identities=16% Similarity=0.178 Sum_probs=178.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-----LAEAYSNLGNVY 86 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~ 86 (904)
+-.|.-++-..+.++|++.|..+++.+|...++.+.+|.++.+.|..+.|+.+-+..++ .|+ ...+...+|.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 44667777888899999999999999999999999999999999999999988877665 343 345788889999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-----hHHHHHHHHHHHcCChH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-----CVRSDLGNLLKALGRLD 161 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~ 161 (904)
+..|-++.|...|....+...--..++..+..+|....+|++|++..++..++.+... ..+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999888776655677888888999999999999999998888877642 22333333333334444
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
.|+..+ .+++..+|....+-..+|
T Consensus 198 ~A~~~l--------------------------------------------------------~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 198 RARELL--------------------------------------------------------KKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHH--------------------------------------------------------HHHHhhCccceehhhhhh
Confidence 443333 477777888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++....|+|..|++.++.+++.+|+. +.+...|..+|..+|+.++.+..+.++.+..++.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 88888888888888888888887775 3566777788888888888888888777766655
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-13 Score=129.67 Aligned_cols=441 Identities=15% Similarity=0.081 Sum_probs=269.1
Q ss_pred HHhhcCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 130 (904)
+....+|..|+.+++-....+... ...-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.++|-|++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 445678888888888776654443 3566778888888899999988888888776666778888888888888888888
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 131 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
..-.++ |+++-....+-.+-.+.++-++-....
T Consensus 112 ~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh------------------------------------------- 144 (557)
T KOG3785|consen 112 SIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFH------------------------------------------- 144 (557)
T ss_pred HHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHH-------------------------------------------
Confidence 776654 555544444444445555544433322
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
..+. +..+-...++.+++..-.|.+|++.|.+++..+|+....-..++.||.++.-++-+.+.
T Consensus 145 --------------~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 145 --------------SSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred --------------HHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 1111 11244556777777777888888888888888888777778888888888888888888
Q ss_pred HHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCC
Q psy17306 291 YVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLF 370 (904)
Q Consensus 291 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (904)
+.-.++..|+++-+. ...
T Consensus 208 l~vYL~q~pdStiA~------------NLk-------------------------------------------------- 225 (557)
T KOG3785|consen 208 LKVYLRQFPDSTIAK------------NLK-------------------------------------------------- 225 (557)
T ss_pred HHHHHHhCCCcHHHH------------HHH--------------------------------------------------
Confidence 888888888772000 000
Q ss_pred CcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC--CCcchhhhHHHHhhhcc
Q psy17306 371 GGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH--PKLTKADKTQVLMSRWR 448 (904)
Q Consensus 371 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--p~~~~~~~~~~~~~~~~ 448 (904)
+.-.+.+-. |+ .|.......... .+.+.. ..+-++
T Consensus 226 --------acn~fRl~n-----gr-------------------------~ae~E~k~ladN~~~~~~f~----~~l~rH- 262 (557)
T KOG3785|consen 226 --------ACNLFRLIN-----GR-------------------------TAEDEKKELADNIDQEYPFI----EYLCRH- 262 (557)
T ss_pred --------HHHHhhhhc-----cc-------------------------hhHHHHHHHHhcccccchhH----HHHHHc-
Confidence 000000000 00 000000000000 000000 000000
Q ss_pred cCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCC
Q psy17306 449 YPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPE 528 (904)
Q Consensus 449 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 528 (904)
++ +..+.| +.+++.-|.
T Consensus 263 --NL-------VvFrng------------------------------------------------------EgALqVLP~ 279 (557)
T KOG3785|consen 263 --NL-------VVFRNG------------------------------------------------------EGALQVLPS 279 (557)
T ss_pred --Ce-------EEEeCC------------------------------------------------------ccHHHhchH
Confidence 00 000000 000011111
Q ss_pred CcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 529 HPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 608 (904)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 608 (904)
- ...+..+..++...|..+++..+|+..... .+|..|.-+...|.++...|+--...++.
T Consensus 280 L------~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd--------------l~PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 280 L------MKHIPEARLNLIIYYLNQNDVQEAISLCKD--------------LDPTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred H------HhhChHhhhhheeeecccccHHHHHHHHhh--------------cCCCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 0 011122338888899999999999988776 79999999999999999998765554444
Q ss_pred HHHH---hh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC
Q psy17306 609 RHAV---RL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679 (904)
Q Consensus 609 ~~al---~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~ 679 (904)
+-+- ++ .-+.......++.+++-..++++.+.++...- ..--++....++++.++...|+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-----------sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-----------SYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhcCcchhhhHHHHHHHHhcC
Confidence 4333 22 12233456777888888888999888554222 2334455678999999999999
Q ss_pred HHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH---HHHHHHc
Q psy17306 680 IWLAIHHFEKAVSLDP-NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL---NKKFEQL 755 (904)
Q Consensus 680 ~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~l 755 (904)
+.+|.+.|-+.-..+- +...-...||.||...|..+-|-++|-+.-... +.-.+...++...-+.+++ .+++..+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~-e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS-ERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999988766553 334556789999999999999999986653322 1223334444433445554 3444444
Q ss_pred C
Q psy17306 756 G 756 (904)
Q Consensus 756 ~ 756 (904)
+
T Consensus 488 E 488 (557)
T KOG3785|consen 488 E 488 (557)
T ss_pred H
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-15 Score=152.84 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=118.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---C
Q psy17306 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---G 633 (904)
Q Consensus 557 ~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g 633 (904)
++++.++.+ +++.+|.+..+|..+|.++...|++++|++.+.++|+.+|.+..+|+.++.+.... |
T Consensus 125 ~~el~~~~k-----------al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 125 NKELEFTRK-----------ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHHHHHH-----------HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence 556777777 99999999999999999999999999999999999999999999999999998876 3
Q ss_pred CH----HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 634 DM----EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 634 ~~----~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
.+ ++++. ...+++..+|++..+|+.++.++.. +++..+|+..+.+++..+|.++.++..|+
T Consensus 194 ~~~~~~e~el~-----------y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 194 GLEAMRDSELK-----------YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLL 262 (320)
T ss_pred cccccHHHHHH-----------HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHH
Confidence 33 24444 6678889999999999999999988 45678899999999999999999999999
Q ss_pred HHHHHh
Q psy17306 706 NVLKEA 711 (904)
Q Consensus 706 ~~~~~~ 711 (904)
.+|...
T Consensus 263 d~~~~~ 268 (320)
T PLN02789 263 DLLCEG 268 (320)
T ss_pred HHHHhh
Confidence 999864
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-12 Score=133.76 Aligned_cols=481 Identities=14% Similarity=0.051 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++.-...+...|+|++|.....+.+...|++..+....-.++.+.++|++|+...+.-....-. ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 445555567778899999999999999999999999999999999999999999554442221111 1223788999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
++..++|+..++ ..++.+..+....|.+++++|+|++|..+|
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY----------------------------------- 133 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIY----------------------------------- 133 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHH-----------------------------------
Confidence 999999999998 456666678888899999999999888888
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVAA 281 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 281 (904)
+...+.+.++.+........-.. --..+- ..+.....|. ..+.+++.+.++...
T Consensus 134 ---------------------~~L~kn~~dd~d~~~r~nl~a~~--a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 134 ---------------------QHLAKNNSDDQDEERRANLLAVA--AALQVQ--LLQSVPEVPEDSYELLYNTACILIEN 188 (652)
T ss_pred ---------------------HHHHhcCCchHHHHHHHHHHHHH--HhhhHH--HHHhccCCCcchHHHHHHHHHHHHhc
Confidence 34444444443332222211111 001111 2333444444 677899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhc
Q psy17306 282 GDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECA 361 (904)
Q Consensus 282 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (904)
|+|.+|++.+++++++........... .+.+...+
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~----------------------------------------eEeie~el----- 223 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTN----------------------------------------EEEIEEEL----- 223 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccc----------------------------------------hhhHHHHH-----
Confidence 999999999999976654331000000 00000000
Q ss_pred cccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhH
Q psy17306 362 SKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKT 440 (904)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~ 440 (904)
...+..++-++..+|+ -.+|...|...+.. |.....
T Consensus 224 ----------~~IrvQlayVlQ~~Gq------------------------------t~ea~~iy~~~i~~~~~D~~~--- 260 (652)
T KOG2376|consen 224 ----------NPIRVQLAYVLQLQGQ------------------------------TAEASSIYVDIIKRNPADEPS--- 260 (652)
T ss_pred ----------HHHHHHHHHHHHHhcc------------------------------hHHHHHHHHHHHHhcCCCchH---
Confidence 0122333344444444 67889999999887 332211
Q ss_pred HHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcc
Q psy17306 441 QVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSG 520 (904)
Q Consensus 441 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 520 (904)
..+. -+++.....-..+ ++...-.........+...+...-.
T Consensus 261 -~Av~---~NNLva~~~d~~~----------------------~d~~~l~~k~~~~~~l~~~~l~~Ls------------ 302 (652)
T KOG2376|consen 261 -LAVA---VNNLVALSKDQNY----------------------FDGDLLKSKKSQVFKLAEFLLSKLS------------ 302 (652)
T ss_pred -HHHH---hcchhhhcccccc----------------------CchHHHHHHHHHHHHhHHHHHHHHH------------
Confidence 0000 1111000000000 0000000000000111111111000
Q ss_pred cccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC
Q psy17306 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 600 (904)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 600 (904)
-.....++.+.+.+..-.+.-+.+.+.... .-...|.....-........+...
T Consensus 303 ---------------~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-----------lp~~~p~~~~~~ll~~~t~~~~~~ 356 (652)
T KOG2376|consen 303 ---------------KKQKQAIYRNNALLALFTNKMDQVRELSAS-----------LPGMSPESLFPILLQEATKVREKK 356 (652)
T ss_pred ---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-----------CCccCchHHHHHHHHHHHHHHHHH
Confidence 011112334555554444544444444333 223334433333333444444447
Q ss_pred HHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC
Q psy17306 601 LQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~ 679 (904)
+.+|++.+....+-+|.. ..+...++.+...+|+++.|++.+...+....+. +..--+.|.+-..+-..+.+.++
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss----~~~~~~~P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS----ILEAKHLPGTVGAIVALYYKIKD 432 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh----hhhhccChhHHHHHHHHHHhccC
Confidence 899999999999999987 6788899999999999999999887554321111 11122234444555556667666
Q ss_pred HHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 680 IWLAIHHFEKAVS-------LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 680 ~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.+-|...+.+|+. -.+..-..+..++..-.+.|+-++|...++..+...+.+.++...+-..+.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5555555555544 455556677788888888899999999999999998887776655544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-13 Score=130.32 Aligned_cols=274 Identities=17% Similarity=0.180 Sum_probs=212.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCC
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 195 (904)
.|.-+.-.++.++|+..|..+++.+|...++...||.++.+.|..+.|+.+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiH---------------------------- 92 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIH---------------------------- 92 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHH----------------------------
Confidence 3444555667777777777777777777777777777777777776666665
Q ss_pred CcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-----hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-----LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
+.+-..|+ ...+...||.-|+..|-++.|...|........--..+
T Consensus 93 -----------------------------Q~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 93 -----------------------------QTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred -----------------------------HHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 33333332 24577889999999999999999999988766666779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhh
Q psy17306 271 YINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350 (904)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (904)
+..|..+|....++++|++.-++..++.+...
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~------------------------------------------------ 175 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTY------------------------------------------------ 175 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc------------------------------------------------
Confidence 99999999999999999999999999888761
Q ss_pred hhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhc
Q psy17306 351 KCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAID 430 (904)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 430 (904)
...
T Consensus 176 ------------------------~~e----------------------------------------------------- 178 (389)
T COG2956 176 ------------------------RVE----------------------------------------------------- 178 (389)
T ss_pred ------------------------hhH-----------------------------------------------------
Confidence 000
Q ss_pred CCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChh
Q psy17306 431 HPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN 510 (904)
Q Consensus 431 ~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 510 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (389)
T COG2956 179 -------------------------------------------------------------------------------- 178 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
++.-|..++..+....+.+.|+..+.+ +++.+|.+..+-..
T Consensus 179 ----------------------------IAqfyCELAq~~~~~~~~d~A~~~l~k-----------Alqa~~~cvRAsi~ 219 (389)
T COG2956 179 ----------------------------IAQFYCELAQQALASSDVDRARELLKK-----------ALQADKKCVRASII 219 (389)
T ss_pred ----------------------------HHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHhhCccceehhhh
Confidence 112346666667777888899999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN 669 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~ 669 (904)
+|.++...|+|+.|++.++.+++.+|+. +.+...|..+|...|+.++.+.++.++.+ ..++ +.+-..
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-----------~~~g-~~~~l~ 287 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-----------TNTG-ADAELM 287 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------ccCC-ccHHHH
Confidence 9999999999999999999999999986 56888999999999999999995555444 4333 345556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 670 LGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 670 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
++..-....-.+.|..+..+-+...|+--..+.
T Consensus 288 l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 288 LADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred HHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 666666677778999999999999997544443
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-15 Score=143.45 Aligned_cols=300 Identities=21% Similarity=0.224 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGW 307 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 307 (904)
..+|..||.+|+.+++|++|+++-..-+.+ .-..+.+--+||.++.-+|.|++|+.++.+-+.+....
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL------ 128 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL------ 128 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH------
Confidence 457788999999999999999986543332 12234566789999999999999999999888665433
Q ss_pred CCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhc
Q psy17306 308 NTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQ 387 (904)
Q Consensus 308 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 387 (904)
.....-+.++|++|.
T Consensus 129 -----------------------------------------------------------------gDrv~e~RAlYNlgn 143 (639)
T KOG1130|consen 129 -----------------------------------------------------------------GDRVLESRALYNLGN 143 (639)
T ss_pred -----------------------------------------------------------------hHHHhhhHHHhhhhh
Confidence 022234678999999
Q ss_pred ccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhhhHHHHhhhcccCccccccccccccCCCC
Q psy17306 388 LVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGG 466 (904)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 466 (904)
+|...|+..-......+...+. .....++.|.+.|..-+++ ....+
T Consensus 144 vYhakGk~~g~~~pee~g~f~~---ev~~al~~Av~fy~eNL~l~~~lgD------------------------------ 190 (639)
T KOG1130|consen 144 VYHAKGKCTGLEAPEEKGAFNA---EVTSALENAVKFYMENLELSEKLGD------------------------------ 190 (639)
T ss_pred hhhhcccccCCCChhhcccccH---HHHHHHHHHHHHHHHHHHHHHHhhh------------------------------
Confidence 9998888644433333322222 2223355566666555443 11100
Q ss_pred cccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhC
Q psy17306 467 KTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVE 546 (904)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 546 (904)
....+.+|.++
T Consensus 191 ---------------------------------------------------------------------r~aqGRa~GnL 201 (639)
T KOG1130|consen 191 ---------------------------------------------------------------------RLAQGRAYGNL 201 (639)
T ss_pred ---------------------------------------------------------------------HHhhcchhccc
Confidence 01224567999
Q ss_pred chhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CcHH
Q psy17306 547 PDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----P--DFID 620 (904)
Q Consensus 547 ~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p--~~~~ 620 (904)
|..|+-.|+|+.|+...+..+.++.++-.++-+ -.++.++|+++.-.|+++.|+++|++.+.+. . ..+.
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae-----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE-----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH-----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 999999999999999999988888777665543 4689999999999999999999999987652 2 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----Cc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-----DP 695 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p 695 (904)
..+.||..|.-..++++||.++++-|.+. +.+........+++.||.++-.+|..++|+.+.++.+++ ||
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIA-----qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIA-----QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 78899999999999999999999988643 334445566789999999999999999999999998887 34
Q ss_pred C-cHHHHHHHHHHHHHhcchhH
Q psy17306 696 N-FLDAYINLGNVLKEARIFDR 716 (904)
Q Consensus 696 ~-~~~a~~~la~~~~~~g~~~~ 716 (904)
. -..+..|+...-...|..+.
T Consensus 352 sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 352 SGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred chhhhhhhhhHHHHHHhCCCcc
Confidence 3 45678888888888886554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=132.38 Aligned_cols=122 Identities=16% Similarity=0.110 Sum_probs=113.3
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
+++.+|++ ++.+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+. .|.++
T Consensus 19 al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-----------~y~~A 84 (144)
T PRK15359 19 LLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN-----------FYGHA 84 (144)
T ss_pred HHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH-----------HHHHH
Confidence 89999875 66789999999999999999999999999999999999999999999999999 77788
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+..+|+++.+++++|.++...|++++|+..|++++.+.|+++..+.++|.+....+
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998876543
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-10 Score=118.57 Aligned_cols=524 Identities=15% Similarity=0.141 Sum_probs=329.1
Q ss_pred cCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--h------cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 21 AGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQ--C------RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 21 ~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
.|.+ .+-.-+|+++++.-|.+..+|+..-..-.. . ..|+.--.+|++++-.-..-+..|.........+|+
T Consensus 38 ~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~ 117 (835)
T KOG2047|consen 38 AGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGL 117 (835)
T ss_pred ccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcch
Confidence 3444 334457888888888888777765422211 1 124444556666665444456677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH--
Q psy17306 92 LQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-- 167 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-- 167 (904)
...-...|.+++..-|-. ..+|-..-......|-++-++..|++-++.+|... ......+...+++++|.+.+
T Consensus 118 iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~ 194 (835)
T KOG2047|consen 118 ITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLAT 194 (835)
T ss_pred HHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHH
Confidence 888888888888766542 23444444444556666677777777777777653 23344455566666665555
Q ss_pred ------------------------------------------------------HHHHhhHHHHHHcCCHHHHHHHHhhc
Q psy17306 168 ------------------------------------------------------CVRSDLGNLLKALGRLDEAKNLHTEN 193 (904)
Q Consensus 168 ------------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 193 (904)
..|..|+..|.+.|.+++|..+|+++
T Consensus 195 vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 195 VLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 37888999999999999999999998
Q ss_pred CCCcchh-hH---------------HHHHH-h--hcCCCcch---HHHhhHHHH------------HhhcCchhHHHHHH
Q psy17306 194 IKPVTMK-VQ---------------NAIVC-N--YGGRKPTT---LESAHFSTL------------AIKQNPLLAEAYSN 239 (904)
Q Consensus 194 ~~~~~~~-~~---------------~~~~~-~--~~~~~~~~---~~a~~~~~~------------~~~~~~~~~~~~~~ 239 (904)
+.....- -. ...+. . ......+. .-....++. ++..+|.+...|..
T Consensus 275 i~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 275 IQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred HHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 7633210 00 00000 0 01111110 111112222 34556666666665
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCccc
Q psy17306 240 LGNVYKERGQLQEALENYRHAVRL-KPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313 (904)
Q Consensus 240 lg~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 313 (904)
... +..|+..+-+..|..|+.. +|.. ...|..+|..|...|+.+.|...|+++.+..-..
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~------------ 420 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT------------ 420 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc------------
Confidence 544 4478899999999998864 5543 3588999999999999999999999998754332
Q ss_pred ccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCC
Q psy17306 314 LDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNG 393 (904)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 393 (904)
..+++..+..-|...
T Consensus 421 -------------------------------------------------------------v~dLa~vw~~waemE---- 435 (835)
T KOG2047|consen 421 -------------------------------------------------------------VEDLAEVWCAWAEME---- 435 (835)
T ss_pred -------------------------------------------------------------hHHHHHHHHHHHHHH----
Confidence 223333333333321
Q ss_pred cccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCc
Q psy17306 394 KILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGK 473 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 473 (904)
.-.+.++.|....+++...|..+.. ..|.+.
T Consensus 436 -------------------lrh~~~~~Al~lm~~A~~vP~~~~~---------~~yd~~--------------------- 466 (835)
T KOG2047|consen 436 -------------------LRHENFEAALKLMRRATHVPTNPEL---------EYYDNS--------------------- 466 (835)
T ss_pred -------------------HhhhhHHHHHHHHHhhhcCCCchhh---------hhhcCC---------------------
Confidence 1123378888888888888665431 001000
Q ss_pred ccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc
Q psy17306 474 VVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG 553 (904)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (904)
......+..-..+|...+++....
T Consensus 467 --------------------------------------------------------~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 467 --------------------------------------------------------EPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred --------------------------------------------------------CcHHHHHHHhHHHHHHHHHHHHHh
Confidence 011111222224567777777888
Q ss_pred CChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHH-
Q psy17306 554 GSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALV- 630 (904)
Q Consensus 554 ~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~- 630 (904)
|-++.....|.+ .+.+.--.|....|.|..+....-+++|.+.|++.+.+. |...+.|+..-....
T Consensus 491 gtfestk~vYdr-----------iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 491 GTFESTKAVYDR-----------IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred ccHHHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 888888888888 888777778889999999999999999999999999985 555666654433322
Q ss_pred H--cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 631 A--AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 631 ~--~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+ -...+.|...|++||+..|..+.+ ..+...+..-...|--..|+..|++|-..-+. .-.+.+=.+|
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aK---------tiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~ 628 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAK---------TIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIY 628 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHH
Confidence 2 237899999888888766543322 34566677777789999999999998766332 2222222333
Q ss_pred HHhc----chhHHHHHHHHhhcccCChhhHHHHH--HHHHHHHHHHHHHHH
Q psy17306 709 KEAR----IFDRANTLFYVSSYFMITDEDIDVIL--ERCEAKTEELNKKFE 753 (904)
Q Consensus 709 ~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~ 753 (904)
...- -...-.++|++++++.|+.......+ +..+.++++...+-+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARa 679 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARA 679 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 2211 12334678888888888765554443 455556666655543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-13 Score=142.66 Aligned_cols=177 Identities=18% Similarity=0.062 Sum_probs=136.3
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHH
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRS 148 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 148 (904)
+|+.+.++..+|.++...|+++.|...+.++....|.+ .......+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888888888888888888888888887776644 345667788888888888888888888888888876655
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhh
Q psy17306 149 DLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 149 ~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
. +..+...|....+.... ...+ .....
T Consensus 82 ~-~~~~~~~~~~~~~~~~~-------------------~~~l---------------------------------~~~~~ 108 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHV-------------------ARVL---------------------------------PLWAP 108 (355)
T ss_pred H-hHHHHHhcccccCchhH-------------------HHHH---------------------------------hccCc
Confidence 4 44444444332221111 1111 12335
Q ss_pred cCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|........+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 5677778888899999999999999999999999999999999999999999999999999999998877643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=125.14 Aligned_cols=151 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNN-TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
-+....+|..|+.+++-.+..+... .....++|.|++..|+|++|+..|+-+...+..++..+.+++.|++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 3566788999999888776554443 356778899999999999999999988887767788999999999999999999
Q ss_pred HHHHHHHHhc--------------C------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 96 LENYRHAVRL--------------K------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 96 ~~~~~~al~~--------------~------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
...-.++-+. + .+..+-...+|.+++..-.|.+|+..|.+++.-+|+.......
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 8776654221 1 1112334556667777778888888888888888888777888
Q ss_pred HHHHHHHcCChHHHHHHH
Q psy17306 150 LGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 150 la~~~~~~~~~~~A~~~~ 167 (904)
++.+|.++.-++-+.+++
T Consensus 191 ~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVL 208 (557)
T ss_pred HHHHHHhcchhhhHHHHH
Confidence 888888888777776655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-14 Score=139.29 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=154.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH---
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA---EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID--- 111 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 111 (904)
++..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445788999999999999999999999999999988765 57899999999999999999999999999988765
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 112 GYINLAAALVAA--------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 112 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
+++.+|.++... |++++|++.+++++..+|++..++..+..+....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~-------------------------- 162 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR-------------------------- 162 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH--------------------------
Confidence 688899999876 7899999999999999999865543332221100
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.........+|.+++..|++.+|+..|++++..
T Consensus 163 -----------------------------------------------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 163 -----------------------------------------------NRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001223457888899999999999999999998
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 264 KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 264 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.|+. +.+++.+|.++..+|++++|+.+++.+....|+
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7654 579999999999999999999998888776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-11 Score=131.65 Aligned_cols=251 Identities=19% Similarity=0.159 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
++.++..+.++...|++++|+++++.....-++....+-..|.++...|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45677788888888888888888888777777778888888888888888888888888888888888888888887773
Q ss_pred HhC-----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 88 ERG-----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ-AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 88 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
... +.+.-...|++.....|....+. .+...+..-..+.. +..++...+.. ..|..+..+-.+|....+..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence 332 45666777777777777643322 11111211122332 33334444432 34555556655554222211
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh-HHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-AEAYSNL 240 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l 240 (904)
-...++ .-+...+..... .... .......|.. ..+++.+
T Consensus 161 ~i~~l~--------------------~~~~~~l~~~~~-----------~~~~---------~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 161 IIESLV--------------------EEYVNSLESNGS-----------FSNG---------DDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred HHHHHH--------------------HHHHHhhcccCC-----------CCCc---------cccccCCchHHHHHHHHH
Confidence 111111 000000000000 0000 0000112222 4567889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+..|...|++++|+.+.+++|+..|..++.+...|.++...|++.+|.+.++.+-.+++.+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 9999999999999999999999999999999999999999999999999999999988877
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-12 Score=139.08 Aligned_cols=295 Identities=14% Similarity=0.020 Sum_probs=218.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
|+.+.+++.+|..+...|+++.|...+.++.+..|.+ .+..+..+.++...|++++|...++++++.+|++..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 6788899999999999999999999999988877754 5667788999999999999999999999999999877775
Q ss_pred HHHHHHHhCcHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 82 LGNVYKERGQLQEALENYRHAV----RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
+..+...|++..+.....+++ ..+|....++..+|.++...|++++|+..++++++++|+++.++..+|.++...
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 656655555444444444444 456777778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH---------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcc--hhhH---HH-H-HHhh-cCCCc
Q psy17306 158 GRLDEAKDLYC---------------VRSDLGNLLKALGRLDEAKNLHTENIKPVT--MKVQ---NA-I-VCNY-GGRKP 214 (904)
Q Consensus 158 ~~~~~A~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~-~-~~~~-~~~~~ 214 (904)
|++++|+..+. .+..++.++...|++++|+..+++.+.... .... .. . .... .....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 99999999883 233578899999999999999998753322 1111 11 1 1111 11111
Q ss_pred chHHHhhHH-HHHhhcC--chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcC
Q psy17306 215 TTLESAHFS-TLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAG 282 (904)
Q Consensus 215 ~~~~a~~~~-~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g 282 (904)
........+ ....... +.........+.++...|+.++|...++........ ........+.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 111111111 1111111 112233346788889999999999999887654322 2456678899999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q psy17306 283 DMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 283 ~~~~A~~~~~~al~~~p~ 300 (904)
++++|+..+..++.....
T Consensus 322 ~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 322 NYATALELLGPVRDDLAR 339 (355)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=128.53 Aligned_cols=127 Identities=15% Similarity=0.083 Sum_probs=119.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 28 ERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 28 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999999885 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
.++.+++.+|.++...|++++|+..|++++++.|+++..+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888776543
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-12 Score=118.28 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=142.5
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
.+..+|..|++++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 56677888888888888888887888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHHhcCCC-hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC
Q psy17306 133 YVTALQYNPD-LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211 (904)
Q Consensus 133 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (904)
...+... |. .......-+-+....+++..+..+
T Consensus 101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsL--------------------------------------------- 134 (459)
T KOG4340|consen 101 AFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSL--------------------------------------------- 134 (459)
T ss_pred HHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHH---------------------------------------------
Confidence 7665432 21 112222233334444444443322
Q ss_pred CCcchHHHhhHHHHHhhcCc--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 212 RKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (904)
++.-| +++....+.|.+.++.|+++.|++-|+.+++...-++..-++++.++++.|++..|++
T Consensus 135 ---------------veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 135 ---------------VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred ---------------HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 23334 5678889999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHhhC
Q psy17306 290 AYVTALQYN 298 (904)
Q Consensus 290 ~~~~al~~~ 298 (904)
+..+.++..
T Consensus 200 ~iSEIieRG 208 (459)
T KOG4340|consen 200 HISEIIERG 208 (459)
T ss_pred HHHHHHHhh
Confidence 888777543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=137.30 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=148.2
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHH---
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAE--- 77 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 77 (904)
.+..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 356688999999999999999999999999999999876 68899999999999999999999999999998665
Q ss_pred HHHHHHHHHHHh--------CcHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q psy17306 78 AYSNLGNVYKER--------GQLQEALENYRHAVRLKPDFIDGY-----------------INLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 78 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~ 132 (904)
+++.+|.++... |++++|+..|++++..+|++..++ ..+|.++...|++.+|+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 799999999886 899999999999999999986432 3678889999999999999
Q ss_pred HHHHHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 133 YVTALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 133 ~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
+++++...|+. +.++..+|.++...|++++|..++
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999997764 578999999999999999998877
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=128.05 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH-Hh
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NA 676 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~-~~ 676 (904)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+. .|.+++.++|+++.++..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~-----------a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL-----------AYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999999999 78888889999999999999975 67
Q ss_pred CCC--HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 677 QGE--IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 677 ~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.|+ +++|...++++++.+|+++.+++++|.++...|++++|+.+|+++++..+.+.+-...+
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 787 59999999999999999999999999999999999999999999999998766555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-11 Score=118.56 Aligned_cols=288 Identities=17% Similarity=0.100 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 86 (904)
+......|..-+..|+|.+|.....+.-+..+...-++..-+...-.+|+++.|-.++.++-+..++ .......++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4556677888889999999999999988777777778888888999999999999999999998443 456788899999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh---HHHHHH--HHHHHcCChH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC---VRSDLG--NLLKALGRLD 161 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la--~~~~~~~~~~ 161 (904)
...|+++.|.....++++..|.++.+......+|...|+|......+.+.-+..--+.+ -+-..+ .++...++-.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999998888765332211 111111 1112222222
Q ss_pred HHHH---HH-----------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHh
Q psy17306 162 EAKD---LY-----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227 (904)
Q Consensus 162 ~A~~---~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 227 (904)
.+.. +. .....++.-+...|+.++|..+..++++........... -.-+..+...-+...++.+
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~--~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI--PRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH--hhcCCCCchHHHHHHHHHH
Confidence 2222 11 355567888899999999999999988754433321111 1223445555666667999
Q ss_pred hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
+..|+++..+..+|..+++.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+..+|.+.++.++...
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877 6678999999999999999999999998554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-11 Score=130.89 Aligned_cols=133 Identities=21% Similarity=0.183 Sum_probs=114.8
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
++++.++..|...|++++|+.+.++ +|...|..++.+...|.++.+.|++.+|.+.++.+-++++.+-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~-----------aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDK-----------AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 4678899999999999999999999 99999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.....+..+++.|+.++|.+.+..-...+ . +|. ..+.....|.+|.+.|++..|+..|..+.+.
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~--------~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTRED--------V-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCC--------C-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999999655322211 1 121 1334456799999999999999999999988
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-09 Score=110.11 Aligned_cols=595 Identities=13% Similarity=0.100 Sum_probs=350.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------CcHHHHHHHHHH
Q psy17306 31 CMQLWRQETNNTGVLLLLSSIHFQCRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------GQLQEALENYRH 101 (904)
Q Consensus 31 ~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~ 101 (904)
|+.-+-.+|.+...|...... ..|.. .+-.-+|+++++.-|.+...|+..-..-..+ ..|..--.+|++
T Consensus 16 fEeEilRnp~svk~W~RYIe~--k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er 93 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEH--KAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFER 93 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHH--HccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHH
Confidence 444455677777777665443 34443 4456789999999999888887655333221 246677788888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHcCChHHHHHHHHHHHhh------
Q psy17306 102 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKALGRLDEAKDLYCVRSDL------ 173 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l------ 173 (904)
++..--+.+..|.........+|+...-...|.+++..-|- +..+|-..-......+-++-++..|+.+..+
T Consensus 94 ~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e 173 (835)
T KOG2047|consen 94 CLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE 173 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH
Confidence 88877778889999999999999999999999999988773 3456766777777788888888888655443
Q ss_pred --HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHH
Q psy17306 174 --GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 174 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 251 (904)
...+...+++++|.+.+...+.... -..+..+.+...|..+.....+.-+.-
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~--------------------------f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDE--------------------------FVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchh--------------------------hhhhcccchhhHHHHHHHHHHhCcchh
Confidence 5677788888888888876554221 112223344445555544444332222
Q ss_pred HH---HHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhh
Q psy17306 252 EA---LENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGA 327 (904)
Q Consensus 252 ~A---~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 327 (904)
.. -..++..+...++. ...|..||..|.+.|.++.|...|++++..--.. ..+..-++....+.....
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv--------rDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV--------RDFTQIFDAYAQFEESCV 299 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh--------hhHHHHHHHHHHHHHHHH
Confidence 21 12344444444443 3467777777777777777777777777543322 001111111111111111
Q ss_pred hhcccc--cccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccC
Q psy17306 328 LVMMKR--PVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVE 405 (904)
Q Consensus 328 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 405 (904)
...|.. ...+....-. +....++..-..+..-..-............+.
T Consensus 300 ~~~me~a~~~~~n~ed~~-----------------------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~ 350 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDV-----------------------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVE 350 (835)
T ss_pred HHHHhhhhhcccChhhhh-----------------------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHH
Confidence 111100 0000000000 000011110000000000000000000000000
Q ss_pred cccccHHHHHHHHhhhHHHHHHhhcC--CCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhccc
Q psy17306 406 PLGDTEEQFYEKIDFDTEDFRTAIDH--PKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIV 483 (904)
Q Consensus 406 ~~~~~~~~~~~~~~~A~~~~~~~l~~--p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (904)
.+-.-...+.....+-+..|..++.. |..+.. ..+
T Consensus 351 eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G------------------s~~------------------------- 387 (835)
T KOG2047|consen 351 EWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG------------------SPG------------------------- 387 (835)
T ss_pred HHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC------------------Chh-------------------------
Confidence 00001111112255667777777765 443321 001
Q ss_pred CCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHH
Q psy17306 484 PNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563 (904)
Q Consensus 484 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 563 (904)
.+-..++.+|...++...+...++++.++--. ....++.+|..-|..-....+++.|+.+.
T Consensus 388 ----------~Lw~~faklYe~~~~l~~aRvifeka~~V~y~---------~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 388 ----------TLWVEFAKLYENNGDLDDARVIFEKATKVPYK---------TVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred ----------hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc---------chHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12235677777777777777776655443221 12234567788899999999999999999
Q ss_pred HHHhhhhhhHH-HHHHHhCC------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q psy17306 564 CRKLDKSAHFS-TLAIKQNP------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636 (904)
Q Consensus 564 ~~~l~~a~~~~-~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 636 (904)
+++...-..-. ...-...| .+...|...+......|-++.....|++++.+.--.|..-.|.|..+....-++
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHH
Confidence 88322110000 00000011 235678889999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHh
Q psy17306 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF---NAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEA 711 (904)
Q Consensus 637 ~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~ 711 (904)
+|.+.|++.+.+.+ -|+..+.|...-..+ +.--..+.|...|++||+.-|.. -.++...+.+-.+.
T Consensus 529 esFk~YErgI~LFk---------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 529 ESFKAYERGISLFK---------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHHHHHHcCCccCC---------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 99996666655331 355556665543332 33457899999999999997732 23456667777888
Q ss_pred cchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH----------HHHHHHHcCCCCCcc
Q psy17306 712 RIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE----------LNKKFEQLGESSLRD 762 (904)
Q Consensus 712 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~l~~~~~~~ 762 (904)
|--..|+.+|+++-.... .++-..+...+..+.++ +.++++.+.....+.
T Consensus 600 GLar~amsiyerat~~v~-~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 600 GLARHAMSIYERATSAVK-EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred hHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 999999999999866543 44444455555444332 677777765554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=143.87 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=136.0
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.....|.++.++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+. .++++
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~-----------~~~~~ 146 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRA-----------EIELY 146 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHH-----------HHHHH
Confidence 3445788899999999999999999999999999999999999999999999999999999999 78888
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+..+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++.++|.++...|+.++|...|+++++...+
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999987654
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-13 Score=129.20 Aligned_cols=266 Identities=21% Similarity=0.241 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------CcccHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNN----TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPLLAE 77 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 77 (904)
+..+-..|..+++.|++...+.+|+.+++....+ ..++..+|..|+..++|++|+++-.--+.+ .-..+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3456678899999999999999999999987765 457888999999999999999876544332 223455
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKP------DFIDGYINLAAALVAAGD--------------------MEQAVQ 131 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~ 131 (904)
+--++|.++...|.|++|+.+..+-+.+.. ....+++++|.+|...|+ ++.|++
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 677899999999999999999988876532 235689999999998775 344555
Q ss_pred HHHHHHhcCCC------hhhHHHHHHHHHHHcCChHHHHHHH-----------------HHHHhhHHHHHHcCCHHHHHH
Q psy17306 132 AYVTALQYNPD------LYCVRSDLGNLLKALGRLDEAKDLY-----------------CVRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 132 ~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~-----------------~~~~~l~~~~~~~g~~~~A~~ 188 (904)
+|..-+++... ...++-+||..|+-+|+++.|+... ++..++|..+.-.|+++.|++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130|consen 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHH
Confidence 55555554222 1356778899999999999998876 366778999999999999999
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC----
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---- 264 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 264 (904)
.|+..+. + ...+......+...+.||..|.-..++.+||.++++-+.+.
T Consensus 257 hYK~tl~---------L------------------Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~ 309 (639)
T KOG1130|consen 257 HYKLTLN---------L------------------AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE 309 (639)
T ss_pred HHHHHHH---------H------------------HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985332 0 01122233446788999999999999999999999987763
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 265 --PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 265 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.....++..||..+...|..++|+.+.+..++....
T Consensus 310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 234568899999999999999999999988876543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=123.98 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHhCc--HHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY-KERGQ--LQEALE 97 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 97 (904)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455577778888888888888888888888888888888888888888888888888888888864 56666 488888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 88888888888888888888888888888888888888888877654
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=122.19 Aligned_cols=129 Identities=30% Similarity=0.369 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
++-+-.-|.-+...++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++ .+..++.++|...
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVk-----------Dce~Al~iDp~ys 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVK-----------DCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHH-----------HHHHHHhcChHHH
Confidence 45677788889999999999999999999999999999999999999999999999 8888889999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh---HHHHHHHHh
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD---RANTLFYVS 724 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~A~~~~~~a 724 (904)
.+|..||.+|..+|++++|++.|+|||+++|++.....+|..+-.+++... .+...+.-+
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 999999999999999999999999999999999999999999988887766 444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=117.37 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=82.3
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.|++++..+|++..+.+.+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALK-----------LFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666667777776777777666 44555555666666677777777666777777777
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|++++..+|.++..++.+|.++...|++++|+..|++++...|++.........+.
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 77776777776777777777777777777777777777666665555444444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-12 Score=141.33 Aligned_cols=239 Identities=9% Similarity=-0.030 Sum_probs=144.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH-----------------HHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE-----------------NYR 100 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-----------------~~~ 100 (904)
+|.+..++..++..+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.+|.. ++.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 444444555555555455555555555555555555544555555554444444444433 333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++..... .+...
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---~~i~~ 182 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---RFIKK 182 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---HHHhh
Confidence 333334444578888888888888888888888888888888888888888888888 88888887732222 25555
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
+++..+..+..+.+...+..... -....++.... .......+.-+=..|...++|++++.+++
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 56666666555432211111100 00000111111 11224455555577788888999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.+++.+|.+..+...++.+|. +.|.. ...++..+++.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s 284 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS 284 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh
Confidence 999999999999999998887 44443 45555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=115.39 Aligned_cols=140 Identities=24% Similarity=0.263 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 106 (904)
+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|+|.+|+..+.++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333444444455555555 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 107 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
|++..+|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-09 Score=107.57 Aligned_cols=205 Identities=14% Similarity=0.011 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-FIDGYINLAAALVA 122 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 122 (904)
....-|..-+..|+|.+|.+...+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ ........+.....
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 33445667778899999999999998888887888888889999999999999999999998444 35678889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
.|+++.|.....++++..|.++.+.....++|...|++.+...++....
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~------------------------------- 214 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR------------------------------- 214 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999988877761110
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH--HHHhCCHHHH---HHHHHHHHhhCCCCHHHHHHHHHH
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV--YKERGQLQEA---LENYRHAVRLKPDFIDGYINLAAA 277 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~ 277 (904)
+.-..++....-+-..+.. +-...+-..+ ..+.+..-..-..++.....++.-
T Consensus 215 ----------------------ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 215 ----------------------KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred ----------------------HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 1111111111111111111 1111111111 123333222233557788888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 278 LVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+...|++++|.+..+.+++..-+.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccCh
Confidence 999999999999999999876554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=112.06 Aligned_cols=122 Identities=12% Similarity=0.021 Sum_probs=107.7
Q ss_pred HHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 611 AVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 611 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
...+. ++..+..+.+|..+...|++++|.. .|+-....+|.++..|++||.++..+|++++|+..|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~-----------~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~ 94 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAAR-----------LFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGR 94 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34566 7788999999999999999999999 77777789999999999999999999999999999999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 690 AVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 690 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
|+.++|++|.+++++|.|+...|+.+.|.+.|+.++....+.+.-..+..++..
T Consensus 95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence 999999999999999999999999999999999999877544444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-12 Score=117.15 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=154.3
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
....+|++..+ .+++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+. .+.++
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~-----------~~rkA 126 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVS-----------VLRKA 126 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHH-----------HHHHH
Confidence 67789999999 9999999999999999999999999999999999899999999999999999 88888
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
...+|+++.+|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.|+++.|..++..+....+.+..+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17306 737 ILERCEAKTEELNKKF 752 (904)
Q Consensus 737 ~l~~~~~~~~~~~~~~ 752 (904)
+++......+++..+-
T Consensus 207 NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 207 NLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHhhcCChHHHH
Confidence 9999998888776663
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=133.84 Aligned_cols=238 Identities=16% Similarity=0.001 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHh
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 89 (904)
+-..|..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 345556677788888888766554111 11223445566677777888776666654310 1112334556777888888
Q ss_pred CcHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-----hHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-----CVRSDLGNLLK 155 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 155 (904)
|++++|...+.++....+. .......+|.++...|++++|...+++++...+... .+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 9999999888887654221 123455677888889999999999999887544321 23344555555
Q ss_pred HcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHH
Q psy17306 156 ALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235 (904)
Q Consensus 156 ~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (904)
..|++++|...+ .+|+.... . .........
T Consensus 503 ~~G~~~~A~~~~----------------~~al~~~~---------------------------------~-~g~~~~~~~ 532 (903)
T PRK04841 503 CKGELARALAMM----------------QQTEQMAR---------------------------------Q-HDVYHYALW 532 (903)
T ss_pred HcCCHHHHHHHH----------------HHHHHHHh---------------------------------h-hcchHHHHH
Confidence 666666665555 22222211 0 011111234
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 236 AYSNLGNVYKERGQLQEALENYRHAVRLKP-----D---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 236 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
++..+|.++...|++++|...+++++.... . ....+..+|.++...|++++|...+.+++....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 667788888999999999999888887521 1 123455678888888999999888888876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-11 Score=135.17 Aligned_cols=174 Identities=12% Similarity=0.013 Sum_probs=119.2
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
+..+|.+|.+.|+.++|...|++ +++.+|+++.++.++|..|... +.++|++++.+|+..
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer-----------~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWER-----------LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHH-----------HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 37778888888888888888888 8888888888888888888887 888888888888776
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH------hhhc---CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLK------AIET---RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~l~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+...+++.++.+...+.+..+|+.+.- .+.. .......+.-+=..|...++|++++..++.+|+.
T Consensus 179 ------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 179 ------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred ------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 555567777777666666665541111 1111 1123344555558888999999999999999999
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
+|.|..+...++.+|...=.-..=.+-|-+..++...+..+...+...+
T Consensus 253 ~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fe 301 (906)
T PRK14720 253 DNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFE 301 (906)
T ss_pred CCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHH
Confidence 9999999999999998332111122222233333333345555555444
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-11 Score=108.56 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=170.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 20 QAGDYESAERHCMQLWRQETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
...+.++-+++...++...+. .-.++-....+....|+.+-|..++++.....|++.......|..+...|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 355677778887777654433 23344455666778899999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy17306 94 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173 (904)
Q Consensus 94 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l 173 (904)
+|+++|+..++-+|.+..++...-.+...+|+.-+|++.+...++..+.+.++|..++.+|...|++.+|.-++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl------ 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL------ 177 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH------
Confidence 99999999999999998888888888888999999999999999999999999999999999999998888777
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC---CH
Q psy17306 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QL 250 (904)
Q Consensus 174 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~ 250 (904)
++.+-..|.++..+..+|.+++-.| ++
T Consensus 178 --------------------------------------------------EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 178 --------------------------------------------------EELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred --------------------------------------------------HHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 6888889999999999999888766 56
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 251 QEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
.-|.++|.++++++|.+..+++++-.+-.
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 77899999999999988888877665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-12 Score=113.65 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=113.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC
Q psy17306 29 RHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108 (904)
Q Consensus 29 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 108 (904)
..+++++..+|++..+.+.+|.+++..|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH
Q psy17306 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147 (904)
Q Consensus 109 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 147 (904)
++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999886543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-11 Score=109.79 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=159.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
+|.....+....|+.+.|..++.+ .-...|++..+.-.-|..+...|++++|+++|+..++-+|.+..+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~-----------L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~ 122 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQ-----------LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI 122 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHH-----------HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH
Confidence 345556666778888889888888 777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+-+.--+...+|+.-+|++ .+...++.-+.+.++|..++.+|...|+|++|.-++++.+-+.|.++-.+
T Consensus 123 ~KRKlAilka~GK~l~aIk-----------~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f 191 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIK-----------ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYF 191 (289)
T ss_pred HHHHHHHHHHcCCcHHHHH-----------HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHH
Confidence 9999999999999999999 66666677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---chhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEAR---IFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 702 ~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
..+|.++.-+| +..-|.++|.+++++.+.+-.....+-.|-..+.+.
T Consensus 192 ~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 192 QRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 99999988776 678899999999999885544444444444444433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-09 Score=128.65 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=122.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---H
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---I 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 619 (904)
..+|.++...|++++|...+.+.+..+. ... +....++..+|.++...|++++|...+.++..+.+.. .
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLS-------NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhh-------ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4567778888999999999988333211 011 2235677789999999999999999999998763321 1
Q ss_pred HHHH----HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-
Q psy17306 620 DGYI----NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD- 694 (904)
Q Consensus 620 ~a~~----~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 694 (904)
.... .....+...|+.+.|...+.......+ .........+..+|.++...|++++|+..+++++...
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-------~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-------ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111 122445567899999885544332110 0000012235689999999999999999999999872
Q ss_pred -----cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 695 -----PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 695 -----p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+....++..+|.++...|+.++|...++++++......
T Consensus 723 ~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 723 SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 23356788999999999999999999999998775443
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-10 Score=106.03 Aligned_cols=188 Identities=14% Similarity=0.025 Sum_probs=156.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
+.+..+|..|++++..-.+..|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~ 177 (904)
........+.-...+...-+.+.+..+++..+....++.-. .+......+.|-+..+.|+++.|.+-|
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkF---------- 167 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKF---------- 167 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHH----------
Confidence 88776543222234455556677778888888777665421 245677788888888889988888877
Q ss_pred HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17306 178 KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
+.+++...-.+..-++++.++++.|+++.|+++.
T Consensus 168 ----------------------------------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 168 ----------------------------------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred ----------------------------------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 5677777777888899999999999999999988
Q ss_pred HHHHhh
Q psy17306 258 RHAVRL 263 (904)
Q Consensus 258 ~~al~~ 263 (904)
...++.
T Consensus 202 SEIieR 207 (459)
T KOG4340|consen 202 SEIIER 207 (459)
T ss_pred HHHHHh
Confidence 877764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=136.11 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHH
Q psy17306 496 LDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFST 575 (904)
Q Consensus 496 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~ 575 (904)
+..+..+....+...+..+.+.......+..|.+++.. .++|.+....|.+++|...++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~La~i~~~~g~~~ea~~~l~~---------- 111 (694)
T PRK15179 52 LQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQ----------VLVARALEAAHRSDEGLAVWRG---------- 111 (694)
T ss_pred HHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHH----------HHHHHHHHHcCCcHHHHHHHHH----------
Confidence 33444444555555666666666666667777776666 9999999999999999999999
Q ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 576 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
+++..|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|++++|+. .|++
T Consensus 112 -~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~-----------~y~~ 179 (694)
T PRK15179 112 -IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA-----------CFER 179 (694)
T ss_pred -HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH-----------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 7777
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
++..+|+++.++.++|.++...|+.++|...|++|++....-...
T Consensus 180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 778899999999999999999999999999999999996544444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=106.28 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=104.3
Q ss_pred HHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 577 AIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 577 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
...+. ++..+..+.+|..+...|++++|...|+-+..++|.++..|++||.++..+|++++|+. .|.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~-----------aY~~ 94 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY-----------AYGR 94 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH-----------HHHH
Confidence 44466 77889999999999999999999999999999999999999999999999999999999 8888
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---cCcHHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD---PNFLDAY 701 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~ 701 (904)
++.++|+++.+++++|.|+...|+.+.|.+.|+.|+... |.+....
T Consensus 95 A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~ 143 (157)
T PRK15363 95 AAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILR 143 (157)
T ss_pred HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 889999999999999999999999999999999999985 4444433
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=128.80 Aligned_cols=228 Identities=18% Similarity=0.150 Sum_probs=205.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
-+|..+..-..+|..+...|-...|+.+|++. +.|-....||...|+..+|..+..+-++ .|+++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34666777888999999999999999999986 5677788999999999999999999999 66779999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
|.+.....-|++|.+.++.. +..+...+|......+++.++.++++..++++|-....|+.+|-+..+.+++..
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 99988887778887777663 345777788888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|...| ...+..+|++.++|.+++.
T Consensus 538 av~aF--------------------------------------------------------~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 538 AVKAF--------------------------------------------------------HRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred HHHHH--------------------------------------------------------HHHhhcCCCchhhhhhhhH
Confidence 99888 6889999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|.+.++-.+|...++++++.+-++...|.+...+....|.+++|++.|.+.+.+....
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999876655
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-11 Score=128.53 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
+...+|......++++++..+++..++++|-....|+++|.+..+.++++.|.+ +|..++.++|++..+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~-----------aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK-----------AFHRCVTLEPDNAEA 555 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH-----------HHHHHhhcCCCchhh
Confidence 444445544555566666666666666666666666666666666666666666 555555555666666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
|+|++.+|.+.|+..+|-..+++|++.+-++..+|-|.-.+....|.+++|++.+.+.++..
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666655555666666666666666666666665555443
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=117.15 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
++-+..-|.-++..++|.+|+..|.+||+++|+++..|.+++.+|.++|.++.|++.++.++.++|....+|..+|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
.+|++++|++.|+++++++|++...+..|..+-...+...
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999888888888777777665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=111.02 Aligned_cols=130 Identities=19% Similarity=0.159 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
.|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++..+|.+.+++++.++|..+...+.+|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.++.+.|++.+|+..++..+..+|+++..|..|++.|..+|+..++....
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999999999999999999999999999987775544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=109.88 Aligned_cols=78 Identities=21% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM-EQAVQAYVTALQYNPLL 301 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~ 301 (904)
+......+.++..+..++.+++.+|+|++|...+++++..+|.+++++.+++.+...+|+. +.+.+++.+....+|++
T Consensus 191 ~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 191 EELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 4666666778889999999999999999999999999999999999999999999999998 66777888888889988
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=119.57 Aligned_cols=114 Identities=23% Similarity=0.200 Sum_probs=99.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
+...|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.+++.++|+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~-----------~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVA-----------DANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCcCCHHHH
Confidence 45667888888999999999999999999999999999999999999999999 6777777888888999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+.+|.++..+|++++|+..|+++++++|+++.+...++.|...+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888866663
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=119.49 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+...|..++..|+|++|+..|.++++.+|.++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
++++|+..|++++.++|+++.+...++.|.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555555555555555555555544444443
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-06 Score=90.71 Aligned_cols=235 Identities=16% Similarity=0.088 Sum_probs=174.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
-....+++.+|...+.++++..|+...+....|.++.+.|+.++|..+++..-...+++..++..+-.||..+|++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34678999999999999999999999999999999999999999998888877778888889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHcCChHHHHH-HHHHHHhhH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC-VRSDLGNLLKALGRLDEAKD-LYCVRSDLG 174 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~-~~~~~~~l~ 174 (904)
.+|++++..+|. .+.+..+-.+|.+-+.|.+-.+.--+..+..|+++- .|..+..+.......++... .+ ..
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~---l~-- 171 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL---LA-- 171 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh---HH--
Confidence 999999999999 888888889999999988877777677777888764 44455555555544444433 11 00
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC-ch--hHHHHHHHHHHHHHhCCHH
Q psy17306 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN-PL--LAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~lg~~~~~~g~~~ 251 (904)
-|.... ++.+... +- .++. ...-.++..+|+++
T Consensus 172 ----------LA~~m~---------------------------------~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 172 ----------LAEKMV---------------------------------QKLLEKKGKIESEAEI-ILYLLILELQGKYQ 207 (932)
T ss_pred ----------HHHHHH---------------------------------HHHhccCCccchHHHH-HHHHHHHHhcccHH
Confidence 111111 1222222 11 1122 22234566788999
Q ss_pred HHHHHHHH-HHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 252 EALENYRH-AVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 252 ~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+|...+.. ..+. .+.+.......+..+...+++.+-.+...+++...+++
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 99999843 3333 34444555566778888999999999999999988876
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=110.53 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=138.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|.++...|++++|+..+.+ . .+.++......++...++++.|.+.++.+-+.+.+..-+..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~-----------~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qL 169 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHK-----------G-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQL 169 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTT-----------T-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHc-----------c-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5566778889999999987776 2 45677777888999999999999999999999988877777
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 624 NLAAALVAAG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 624 ~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
..+++....| ++.+|.-.|+ +.....|.++..++.++.++..+|++++|.+.+++++..+|++++++
T Consensus 170 a~awv~l~~g~e~~~~A~y~f~-----------El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 170 AEAWVNLATGGEKYQDAFYIFE-----------ELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHH-----------HHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHH-----------HHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 7788887777 5899999555 44444566788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcch-hHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIF-DRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFE 753 (904)
Q Consensus 702 ~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (904)
.|++.+...+|+. +.+.+++.+.....|+.+-+ .....+...++....
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~----~~~~~~~~~FD~~~~ 287 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV----KDLAEKEAEFDRAVA 287 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 9999999999999 55677777777777664433 333344444554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.2e-09 Score=105.16 Aligned_cols=139 Identities=17% Similarity=0.024 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+|....++|..+..+...|++++|+..++..+...|+|+..+...+.++...++..+|.+ .+++++..+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e-----------~~~kal~l~ 370 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIE-----------RLKKALALD 370 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-----------HHHHHHhcC
Confidence 467788999999999999999999999999999999999999999999999999999999 777778888
Q ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
|+.+..+.++|.++.+.|++.+|+..++..+..+|+++..|..||..|..+|+..+|...+-........
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9889999999999999999999999999999999999999999999999999988888877666555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-08 Score=97.37 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHH
Q psy17306 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGY 113 (904)
Q Consensus 40 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 113 (904)
..+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.++++.+++++|+..|++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778888999999999999999999999998876554 4889999999999999999999999998876 4578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCChhh---HHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 114 INLAAALVAAG---------------D---MEQAVQAYVTALQYNPDLYC---VRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 114 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
+.+|.++...+ | ..+|+..|++.++..|++.- +...+..+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~------------------ 171 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK------------------ 171 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH------------------
Confidence 88888765443 1 24678888899999888642 111111111
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
..-+.--+.+|..|.+.|.|..
T Consensus 172 ----------------------------------------------------------~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 172 ----------------------------------------------------------DRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHcCchHH
Confidence 1113334567888888889988
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 253 ALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTA 294 (904)
Q Consensus 253 A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (904)
|+.-++.+++..|+. .+++..++.+|..+|..++|..+....
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999988887765 468888888888899888887766543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-09 Score=98.88 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|+++.|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46789999999999999999999999999998875 6789999999999999999999999999998874 56899
Q ss_pred HHHHHHHHhC-----------cHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHH
Q psy17306 81 NLGNVYKERG-----------QLQEALENYRHAVRLKPDFIDG-----------------YINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 81 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~ 132 (904)
.+|.+++.+. ...+|+..|+..+...|++..+ -+.+|..|.+.|.+..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999977653 3458999999999999987432 24568889999999999999
Q ss_pred HHHHHhcCCChh---hHHHHHHHHHHHcCChHHHH
Q psy17306 133 YVTALQYNPDLY---CVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 133 ~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~ 164 (904)
++.+++..|+.. .++..++..|..+|..+.|.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999874 67888899999999887543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=99.41 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
....++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45678999999999999999999999999999987654 4899999999999999999999999998764 67899
Q ss_pred HHHHHHHHhC------------------cHHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCC
Q psy17306 81 NLGNVYKERG------------------QLQEALENYRHAVRLKPDFID---G--------------YINLAAALVAAGD 125 (904)
Q Consensus 81 ~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~---~--------------~~~la~~~~~~g~ 125 (904)
.+|.++...+ ...+|+..|++.++..|+..- + -+.+|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9998865543 135788999999999998732 1 2356788999999
Q ss_pred HHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 126 MEQAVQAYVTALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 126 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
|..|+.-++.+++..|+. .+++..++..|...|..++|....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999999999998876 578889999999999999987765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.2e-09 Score=99.68 Aligned_cols=122 Identities=18% Similarity=0.082 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC---cHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QLQEALENYR 100 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 100 (904)
.+.-+.-++.-+..+|++++.|..||.+|+..|+++.|...|.+++++.|+++..+..+|.+++.+. ...++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566777788889999999999999999999999999999999999999999999999999987764 4678999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
+++..+|.+..+...+|..++..|+|.+|+..|+..+...|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-09 Score=93.13 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAY 79 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 79 (904)
..+...+..+......++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345667788888888999999999999999999988 5678889999999999999999999999977553 4688
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
+.+|.++...|++++|+..++. +...+..+.++..+|.++...|++++|+..|++++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999999976 34445557788899999999999999999999875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.2e-09 Score=99.68 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG- 678 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g- 678 (904)
..+.-+.-++.-+..+|++..-|..||.+|+.+|++..|.. .|.+++++.|+++..+..+|.++..+.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~-----------AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALL-----------AYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 35566667777788888888888888888888888888888 777777788888888888888776653
Q ss_pred --CHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHH
Q psy17306 679 --EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILER 740 (904)
Q Consensus 679 --~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 740 (904)
...+|...|++++..||.++.+.+.||..++..|++.+|...|+..+++.|.+..-...+.+
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 35688889999999999999999999999999999999999999999888765544444333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-08 Score=94.24 Aligned_cols=175 Identities=18% Similarity=0.221 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH---HHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYI 114 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 114 (904)
.+..++..|..++..|+|.+|+..|++++...|. ...+.+.+|.+++..|++++|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4678889999999999999999999999988765 467889999999999999999999999999988764 5788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 115 NLAAALVAAG-----------DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 115 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
.+|.++.... ...+|+..|+..+...|++.-+-. |...+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l---------------- 133 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRL---------------- 133 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHH----------------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHH----------------
Confidence 8888876543 234788888888888888643211 11100
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
..+...-+.--+.+|..|.+.|.|..|+..++.+++.
T Consensus 134 -------------------------------------------~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 134 -------------------------------------------AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0111112344566889999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHHcCCHHHHH
Q psy17306 264 KPDFI---DGYINLAAALVAAGDMEQAV 288 (904)
Q Consensus 264 ~p~~~---~~~~~la~~~~~~g~~~~A~ 288 (904)
.|+.. .++..++.++..+|..+.|.
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88875 57888899999999888543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-09 Score=92.37 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
+..++.+|..+...|++++|+..|.++++.+|++ +.+++.+|.++...|++++|+..|++++ ...|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~p 70 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-----------KKYP 70 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------HHCC
Confidence 3567778888888888888888888888877765 4577788888888888888888444433 3333
Q ss_pred c---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 662 D---FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 662 ~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+ .+.+++.+|.++...|++++|+..++++++..|++..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 3 356778888888888888888888888888888776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-09 Score=98.36 Aligned_cols=99 Identities=25% Similarity=0.352 Sum_probs=84.2
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 657 (904)
++..+.+++.+|.++...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+. .+.+++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----------~~~~al 99 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-----------YYHQAL 99 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHH
Confidence 44567789999999999999999999999999987663 4689999999999999999999 666666
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
...|+++.++..+|.++...|+...|...+.++
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHH
Confidence 778888999999999999999865555444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-09 Score=91.16 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNL 82 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 82 (904)
+.++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 345555555555555555555555555555543 3455555555555555555555555555554442 3455555
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
|.++...|++++|+..+++++...|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555555555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=96.04 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=86.0
Q ss_pred HHHhCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 577 AIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 577 al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+..++. ...+++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 25 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~----------- 93 (168)
T CHL00033 25 ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE----------- 93 (168)
T ss_pred hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-----------
Confidence 3334443 36788999999999999999999999999987763 4589999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHH-------hCCCHH-------HHHHHHHHHHhcCcCc
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFN-------AQGEIW-------LAIHHFEKAVSLDPNF 697 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~ 697 (904)
.+.+++..+|.....+.++|.++. ..|+++ +|+..|++++..+|.+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555666667777888888888888 666665 4455555556666644
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=84.56 Aligned_cols=67 Identities=37% Similarity=0.450 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc-chhHHHHHHHHhhcccC
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR-IFDRANTLFYVSSYFMI 729 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~a~~~~~ 729 (904)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.|+++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 89999999999998765
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-08 Score=94.94 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17306 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 40 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 116 (904)
..+.+++.+|..+...|++++|+.+|+++++..|+ ...++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34556677777777777777777777777765543 245677777777777777777777777777777777777777
Q ss_pred HHHHHHcCC--------------HHHHHHHHHHHHhcCCCh
Q psy17306 117 AAALVAAGD--------------MEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 117 a~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 143 (904)
|.++...|+ +++|++++++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 777766665 677888888888888876
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=102.56 Aligned_cols=119 Identities=27% Similarity=0.317 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----F-----------IDGYINLAAALVAAGDMEQAVQAYVTALQYN 649 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 649 (904)
+...-..|..+++.|+|..|...|++++..-+. + ..++.|++.|+.++++|.+|+.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~--------- 278 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIE--------- 278 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH---------
Confidence 345567889999999999999999999876321 1 1244445555555555555554
Q ss_pred hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 650 ~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
.+.++++.+|+++.++|..|.++..+|+++.|+..|++|++++|+|-.+...|..+..+..++
T Consensus 279 --~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 279 --SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred --HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555555555555555555555555544444444444444433
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.8e-06 Score=87.37 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
...+-.+|.++.++|.|..|.+-|.+|=
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4578899999999999999988888763
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-08 Score=101.65 Aligned_cols=158 Identities=15% Similarity=0.057 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHhcCcc
Q psy17306 10 GLLELAHREYQAGD---YESAERHCMQLW---RQETNNTGVLLLLSSIHFQC---------RKLDKSAHFSTLAIKQNPL 74 (904)
Q Consensus 10 ~l~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 74 (904)
.++.+|...+..+. ...|+.+|.+++ ..+|..+.++..++.|++.. .+..+|.+..+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 45778887776665 467889999999 99999999999999998855 2456889999999999999
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHH-
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL- 153 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~- 153 (904)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|++.++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875443322222
Q ss_pred HHHcCChHHHHHHH
Q psy17306 154 LKALGRLDEAKDLY 167 (904)
Q Consensus 154 ~~~~~~~~~A~~~~ 167 (904)
.+-....++|+.+|
T Consensus 417 ~~~~~~~~~~~~~~ 430 (458)
T PRK11906 417 MYVPNPLKNNIKLY 430 (458)
T ss_pred HHcCCchhhhHHHH
Confidence 33345566666666
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=83.49 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 695 (904)
++.+|..+|.++...|++++|+. .|.++++.+|+++.+|+++|.++..+| ++++|++.|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~-----------~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIE-----------YFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHH-----------HHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999 777778889999999999999999999 79999999999999998
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=95.43 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=104.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNN--TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQL 92 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~ 92 (904)
++-.+.|..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+ .+.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 444556777778887776666654 677899999999999999999999999988665 346899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCChh
Q psy17306 93 QEALENYRHAVRLKPDFIDGYINLAAALV-------AAGDME-------QAVQAYVTALQYNPDLY 144 (904)
Q Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 144 (904)
++|+..+++++.++|.....+..+|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999989998888 777766 55666667777787653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=85.67 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++..|..|-+.|-+.-|.--|.+++.+.|.-+.++..+|..+...|+|+.|.+.|...++++|.+.-++.+.|..++-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCChh
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~ 144 (904)
-|++.-|.+.+.+-.+.+|++|
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCCh
Confidence 5555555555555555555543
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=101.73 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD--------FAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
...-..|..+++.|+|..|...|++++..-. ..-..+++ ...++.|++.|+.++++|.+|+...+++|
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~----~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLE----YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhh----ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445678999999999999999999887432 11111111 23578999999999999999999999999
Q ss_pred hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
.++|+|+.++|..|.++..+|+++.|+..|++++...|++..+..-+..|..+..+++.+-
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877663
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=100.82 Aligned_cols=151 Identities=17% Similarity=0.044 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHH---HhCCchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAI---KQNPLLAEAYSNLGNVYKER---------GQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|+.+|.+ ++ ..+|+.+.++-.++.|+... ....+|.+..+++++++|.++.++.
T Consensus 274 ~~~Al~lf~r-----------a~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~ 342 (458)
T PRK11906 274 IYRAMTIFDR-----------LQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILA 342 (458)
T ss_pred HHHHHHHHHH-----------HhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4556666666 99 89999999999999998654 2456899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
.+|.+....++++.|+. .|++++.++|+.+.+|+..|+++...|+.++|++.++++++++|....+-.-
T Consensus 343 ~~g~~~~~~~~~~~a~~-----------~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 343 IMGLITGLSGQAKVSHI-----------LFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred HHHHHHHhhcchhhHHH-----------HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 99999999999999999 7888888999999999999999999999999999999999999987655443
Q ss_pred HHHH-HHHhcchhHHHHHHHHhhccc
Q psy17306 704 LGNV-LKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 704 la~~-~~~~g~~~~A~~~~~~a~~~~ 728 (904)
--.+ ..-....++|+..|.+--++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 412 KECVDMYVPNPLKNNIKLYYKETESE 437 (458)
T ss_pred HHHHHHHcCCchhhhHHHHhhccccc
Confidence 3333 334456788998887765544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-08 Score=88.19 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=98.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch---HHHHH
Q psy17306 595 YKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF---AVAWS 668 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~---~~a~~ 668 (904)
....++...+...++..++.+|+. ..+.+.+|.++...|++++|+..|+.++. ..|+. +.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-----------~~~d~~l~~~a~l 89 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-----------NAPDPELKPLARL 89 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------hCCCHHHHHHHHH
Confidence 336789999999999999999988 45788899999999999999996655554 33332 56788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.||.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999976 34455568889999999999999999999999874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=88.18 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=98.9
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 115 (904)
...++..+..+..|.-++..|++++|...|+-....+|.++..++.||.|+..+++|++|+..|..+..++++++.+.+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34555677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.|.|++.+|+.+.|+.+|..++. .|.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999999998 45544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-09 Score=85.35 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
+|+|+.|+.+++++++.+|. +...++.+|.+++..|++++|+.++++ .+.+|.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555555555555555553 234444455555555555555555555 445555555555555555555555555555
Q ss_pred HHH
Q psy17306 99 YRH 101 (904)
Q Consensus 99 ~~~ 101 (904)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=85.81 Aligned_cols=97 Identities=45% Similarity=0.657 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+. .+.+++...|.+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----------~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE-----------DYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhCCCcchhHH
Confidence 44555555555555555555555555555555555555555555555555555 3333333444444555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 695 (904)
..+|.++...|++++|...+.+++..+|
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 5555555555555555555555555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=85.21 Aligned_cols=97 Identities=35% Similarity=0.577 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcCC
Q psy17306 125 DMEQAVQAYVTALQYNP 141 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p 141 (904)
++++|...+.++++.+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=107.19 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHhc--Cc
Q psy17306 7 LGIGLLELAHREYQAGD---YESAERHCMQLWRQETNNTGVLLLLSSIHFQCR--------KLDKSAHFSTLAIKQ--NP 73 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p 73 (904)
.+-.++.+|..++..++ +..|+.+|+++++.+|+++.++..++.++.... +...+.....+++.. +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45567888888887666 889999999999999999999998888776542 345666667776664 77
Q ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
..+.++..+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77889999999999999999999999999999994 789999999999999999999999999999999874
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-06 Score=92.81 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHH------HHhc----------------------CcC---cHHHHHHHHHHHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEK------AVSL----------------------DPN---FLDAYINLGNVLKE 710 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~~----------------------~p~---~~~a~~~la~~~~~ 710 (904)
.+|..+..-+..+....+|++|+..+-. |+++ .|+ ...++..+|.++.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 3577788888889999999999887554 4444 111 24578899999999
Q ss_pred hcchhHHHHHHHHhh
Q psy17306 711 ARIFDRANTLFYVSS 725 (904)
Q Consensus 711 ~g~~~~A~~~~~~a~ 725 (904)
+|.|..|-+-|.+|-
T Consensus 1158 QG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAG 1172 (1416)
T ss_pred ccchHHHHHHHhhhh
Confidence 999999988887663
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=88.42 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=97.2
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
+..+.++..+..+..|.-++..|++++|.. .|+-..-.+|.++..|..||.|+..+|+|++|+..|..+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~-----------~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAET-----------FFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677889999999999999999999 666666789999999999999999999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 691 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
..+++++|...++.|.||..+|+.+.|..+|..+.+.
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999883
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-09 Score=84.57 Aligned_cols=81 Identities=23% Similarity=0.342 Sum_probs=69.8
Q ss_pred hcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 55 CRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
.|+++.|+.+++++++.+|. +...++.+|.|+++.|+|++|+..+++ ...+|.++...+.+|.|+..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68899999999999998884 566788899999999999999999999 888888888888889999999999999999
Q ss_pred HHHH
Q psy17306 133 YVTA 136 (904)
Q Consensus 133 ~~~a 136 (904)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-06 Score=85.33 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=123.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP----LLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-- 615 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 615 (904)
++..+|.++....++++|+-+..++++.... +..+. ....+++.++..+..+|....|.++.+.+.++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s-----~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNS-----YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh-----cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3466777777788888888887774443221 11111 124578899999999999999999999998872
Q ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-----HHHH
Q psy17306 616 ----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-----AIHH 686 (904)
Q Consensus 616 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-----A~~~ 686 (904)
|-.......+|.+|...|+.+.|...|+++.....+ +...-....++...+.++....-..+ |++.
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-----~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-----LGDRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 344567788999999999999999999988865432 11222335667777777665544444 8888
Q ss_pred HHHHHhcCcC------cHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 687 FEKAVSLDPN------FLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 687 ~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
-++++++... --..+..++.+|..+|.-++=...+..+-
T Consensus 314 n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 314 NTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 8888887433 24567889999999988888777776654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=77.99 Aligned_cols=64 Identities=34% Similarity=0.547 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
.+|..+...|++++|+. .|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~-----------~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIA-----------AFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHH-----------HHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45666666666666666 55555556666666666666666666666666666666666666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=77.63 Aligned_cols=63 Identities=25% Similarity=0.469 Sum_probs=37.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455566666666666666666666666666666666666666666666666666666666654
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-09 Score=100.44 Aligned_cols=219 Identities=14% Similarity=0.038 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 124 (904)
+-..|.-|+.+|+|++|+.+|.+++..+|.|+..+.+++.+|++++.|..|...+..++.++.....+|...|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH-------------H---HHHhhHHHHHHcCCHHHHHH
Q psy17306 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-------------C---VRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 125 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-------------~---~~~~l~~~~~~~g~~~~A~~ 188 (904)
...+|.+.++.++++.|++.+..-.++.+-. ..++.-.. . ..-.-|..+...|.++.++.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence 6666666666666666665444333332221 11111110 0 01112334444455555444
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 268 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 268 (904)
.+...+. ....+.....+ +..+.+..+++.|+.-..+++..+|...
T Consensus 256 ~~~~~~A---------------------------------~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~ 301 (536)
T KOG4648|consen 256 DVVSPRA---------------------------------TIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPM 301 (536)
T ss_pred Eeecccc---------------------------------ccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcC
Confidence 4432111 11111111112 4556666788889988888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
......+.+-.-.|...++...++.++.+.|.+
T Consensus 302 ~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 302 PDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred cccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 666667777777788888999999999988877
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.2e-08 Score=105.49 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=106.8
Q ss_pred ccCCCCcchHHHHHHHHHHHhhCchhHhhcCC---hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-
Q psy17306 524 RTNPEHPNYVAAARATKYVYNVEPDLTREGGS---IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG- 599 (904)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 599 (904)
...|.++..+ -++..|..+...++ ...|+.+|++ +++.+|+++.++-.++.++....
T Consensus 331 ~~~~~~~~Ay--------~~~lrg~~~~~~~~~~~~~~A~~lle~-----------Ai~ldP~~a~a~A~la~~~~~~~~ 391 (517)
T PRK10153 331 QGLPHQGAAL--------TLFYQAHHYLNSGDAKSLNKASDLLEE-----------ILKSEPDFTYAQAEKALADIVRHS 391 (517)
T ss_pred ccCCCCHHHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHHHh
Confidence 3455555555 23455555544433 6778888888 99999999999999988875542
Q ss_pred -------CHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 600 -------QLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 600 -------~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
+...+.+...+++.+ +|..+.++..+|..+...|++++|.. .+++++.++|+ ..+|..+
T Consensus 392 ~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~-----------~l~rAl~L~ps-~~a~~~l 459 (517)
T PRK10153 392 QQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQ-----------AINKAIDLEMS-WLNYVLL 459 (517)
T ss_pred cCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHHcCCC-HHHHHHH
Confidence 234556666666554 66677788888888888888888888 66666667774 6788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 671 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
|.++...|++++|++.|++|+.++|.++.
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 88888888888888888888888888775
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=94.25 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 584 LAEAYSNLGNVY-KERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 584 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
....++..|..+ ...|++++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..| .
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--------~ 212 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--------K 212 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------C
Confidence 356677777766 56799999999999999999998 57999999999999999999996665554433 2
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+|..+.+++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 566789999999999999999999999999999999887553
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.9e-08 Score=85.76 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=102.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
=|.-++..|+|++|..-|..||++.|+...+ .....|.+.|.+..+++.++.|+....+|++++|.+..++...
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTE------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHH------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3555666677777777666666666654432 1245688899999999999999999999999999999999999
Q ss_pred HHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHH--------HHHHHHHHcCCCCCccccc
Q psy17306 705 GNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTE--------ELNKKFEQLGESSLRDFTL 765 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~l~~~~~~~~~~ 765 (904)
|.+|.++..+++|++-|++.+++.|........+.+...+++ +.-.++..+|...+.+|++
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGl 243 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGL 243 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 999999999999999999999999987766655554443333 3344555666666777765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=97.04 Aligned_cols=180 Identities=16% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---- 615 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 615 (904)
+..|...|..|...+++++|...|.++.+ +..+ .......+..+...|.++... ++++|+.+|++++.+.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~----~~~~-~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD----CYEK-LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH----HHHH-TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH----HHHH-cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 35678889999999999999999999322 2221 111123456778888887766 9999999999999872
Q ss_pred -CC-cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 616 -PD-FIDGYINLAAALVAA-GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 616 -p~-~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
|. -..++..+|.+|... |++++|+++|++|++ .|... ...-.....+..+|.++...|+|++|++.|+++..
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~----~y~~e-~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE----LYEQE-GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH----HHHHT-T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHC-CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 245889999999999 999999999999997 44332 11122346788999999999999999999999987
Q ss_pred cCcC-------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 693 LDPN-------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 693 ~~p~-------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..-+ ....+...+.|+...|+...|...|++.....|+
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6321 1245677888999999999999999999887764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=95.86 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=127.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-----CC-CHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQN-----PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PD-FIDGYI 114 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~ 114 (904)
..|.+|...|++++|..+|.++.... +. .+.++...+.++.+. ++++|+.+|++++.+. |. -..++.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34788888999999999999987642 22 344666666666555 9999999999999873 11 145788
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 115 NLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 115 ~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
.+|.+|... |++++|+++|++|+.+.... ..++..+|.++...|+|++|+..|
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~-------------------- 178 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY-------------------- 178 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH--------------------
Confidence 999999998 99999999999998763211 234455555555555555555555
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc---CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 264 (904)
++... ..+.. .......++..+.+++..|++..|...+++....+
T Consensus 179 ---e~~~~-----------------------------~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 179 ---EEVAK-----------------------------KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp ---HHHHH-----------------------------TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred ---HHHHH-----------------------------HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 32110 00000 11223456677889999999999999999999988
Q ss_pred CCCH-----HHHHHHHHHHH--HcCCHHHHHHHHHHHHhhCC
Q psy17306 265 PDFI-----DGYINLAAALV--AAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 265 p~~~-----~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p 299 (904)
|... .....+-.++. ....+++|+.-|.+.-++++
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 7543 23344444443 23457777777766555443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9e-06 Score=82.49 Aligned_cols=224 Identities=37% Similarity=0.466 Sum_probs=188.1
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETN--NTGVLLLLSSIHFQCRKLDKSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 47778888888888887776 378888899999999999999999999987 67888899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPD---LYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
..+.+++...+.........+. ++...|+++.|...+.+++..+|. ........+..+...++++.++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----- 190 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL----- 190 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH-----
Confidence 9999999988877666666666 899999999999999999887763 3444555555555566666666555
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHHHHHHHHHHhCCHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~ 251 (904)
.+.+...+. ....+..++..+...+++.
T Consensus 191 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 191 ---------------------------------------------------EKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred ---------------------------------------------------HHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 466666777 6888999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999987788888888888778899999999999999886
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.2e-07 Score=79.87 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
.+..++.+|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCChHHHHHHH
Q psy17306 155 KALGRLDEAKDLY 167 (904)
Q Consensus 155 ~~~~~~~~A~~~~ 167 (904)
.--|++.-|.+.+
T Consensus 144 YY~gR~~LAq~d~ 156 (297)
T COG4785 144 YYGGRYKLAQDDL 156 (297)
T ss_pred eecCchHhhHHHH
Confidence 8888888887666
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=92.74 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHHHHH-HhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---HHHHH
Q psy17306 42 TGVLLLLSSIH-FQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYI 114 (904)
Q Consensus 42 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 114 (904)
....+..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444443 34456666666666666655554 3456666666666666666666666666555442 45555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 115 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.+|.++..+|++++|+..|+++++..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666666666666666666666666666554
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.1e-05 Score=76.81 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH--------------------HHHhhHHH
Q psy17306 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC--------------------VRSDLGNL 176 (904)
Q Consensus 117 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~--------------------~~~~l~~~ 176 (904)
-..+.++.+..-+..-.+.+..+..+.+.+....+..++..|++..|.+.+. .++++|-+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3444555566666666666666666677778888888889999999988881 35678888
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 256 (904)
+...|.|.-+..+|.+++......... .+.... ...-......+..++.|..+...|++-.|..+
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~----g~~~~~-----------~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRN----GLKPAK-----------TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhc----cCCCCc-----------ceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 888888888888887665411100000 000000 00000113467899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 257 YRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
|.++......+|..|+.++.|.+.
T Consensus 358 f~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 358 FQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-06 Score=84.97 Aligned_cols=268 Identities=19% Similarity=0.251 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC----c--ccH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQN----P--LLA 76 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~ 76 (904)
..+...+..|..++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.|++++.+--..+... . ...
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999987654432 344445667888899988877655444431 1 135
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hh
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL------YC 145 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 145 (904)
.++.+++..+...-++.+++.+-+..+.+.... ..+...+|.++..++.++++++.|+.++++..++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 688899999999999999999998888874333 3567779999999999999999999999874433 25
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH---------------------HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLYC---------------------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA 204 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 204 (904)
++..||.++....++++|.-+.. ..+.++..+...|....|.+..+++.+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla------- 236 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA------- 236 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-------
Confidence 78899999999999999876652 44556677777777777777776533200
Q ss_pred HHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q psy17306 205 IVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAAL 278 (904)
Q Consensus 205 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 278 (904)
-.....+..+.....+|.+|...|+.+.|..-|+.+...... ...++...+.++
T Consensus 237 --------------------l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 237 --------------------LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL 296 (518)
T ss_pred --------------------HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 111223445677888999999999999999999999876321 234666666666
Q ss_pred HHcCCHHH-----HHHHHHHHHhhCCC
Q psy17306 279 VAAGDMEQ-----AVQAYVTALQYNPL 300 (904)
Q Consensus 279 ~~~g~~~~-----A~~~~~~al~~~p~ 300 (904)
....-..+ |++.-.+++++...
T Consensus 297 ~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 297 ETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHH
Confidence 65544444 77777777766543
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=83.33 Aligned_cols=118 Identities=24% Similarity=0.269 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+..+-.-|+-++..|+|++|..-|..||.+.|..+ ..|.+.|.+...++.++.|+. .+.+++++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~-----------dcsKaiel 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE-----------DCSKAIEL 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH-----------HHHhhHhc
Confidence 34456678888999999999999999999998754 478899999999999999999 88888899
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+|.+-.++...+.+|.++..+++|++.|.+.++.+|....+.-..+.+--....
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999999988877766665444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-07 Score=77.36 Aligned_cols=96 Identities=24% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.+++.+|.++...|+.++|+..|++++...++. ..+++.+|..+..+|++++|+.. +++.+...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~-----------L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL-----------LEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHHCCC
Confidence 356666666777777777777777776654332 34666666666666666666663 3333333344
Q ss_pred ---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 663 ---FAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 663 ---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
+..+...++.++...|+.++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555666666666666666666666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-05 Score=81.74 Aligned_cols=203 Identities=31% Similarity=0.334 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH-
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWR--QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN- 84 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~- 84 (904)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45677888899999999999999999987 688889999999999999999999999999999988877666666666
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHcCCh
Q psy17306 85 VYKERGQLQEALENYRHAVRLKP---DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 160 (904)
++...|+++.|...|.+++...| .........+..+...++++.|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 89999999999999999998777 35666777777788999999999999999999999 688888888888888888
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
..|...+ ..++...|.....+..+
T Consensus 219 ~~a~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 219 EEALEYY--------------------------------------------------------EKALELDPDNAEALYNL 242 (291)
T ss_pred HHHHHHH--------------------------------------------------------HHHHhhCcccHHHHhhH
Confidence 8777777 46666666666777778
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhCCC
Q psy17306 241 GNVYKERGQLQEALENYRHAVRLKPD 266 (904)
Q Consensus 241 g~~~~~~g~~~~A~~~~~~al~~~p~ 266 (904)
+..+...+.++++...+.+++...|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888777899999999999999887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.4e-07 Score=94.54 Aligned_cols=151 Identities=15% Similarity=0.118 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTG--VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
.++..+..++..|.--.+-.... .|+... ..-.+..+....++++.|+..+++..+.+|+ +...++.++.
T Consensus 140 ~fi~~~~~~~~~G~~lG~~~~i~-----~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l 211 (395)
T PF09295_consen 140 NFIKLFPKLFERGWKLGSDPEIQ-----VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL 211 (395)
T ss_pred HHHHHHHHHhhcccccCCCCccC-----CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence 35666666666665443322111 133222 2223344455667888888888888887765 5566788888
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
..++-.+|++.+.+++...|.+...+...+..+...++++.|+...++++...|++...|..|+.+|...|+++.|+..+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred H
Q psy17306 168 C 168 (904)
Q Consensus 168 ~ 168 (904)
+
T Consensus 292 N 292 (395)
T PF09295_consen 292 N 292 (395)
T ss_pred h
Confidence 4
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=78.08 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETN---NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSN 81 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 81 (904)
+..++..|...+..|+|.+|++.|+.+....|. ...+.+.+|.+|+..|++++|+..+++.++++|++ ..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 567889999999999999999999999888776 46788889999999999999999999999988875 457888
Q ss_pred HHHHHHHhCc
Q psy17306 82 LGNVYKERGQ 91 (904)
Q Consensus 82 la~~~~~~g~ 91 (904)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8888887765
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0015 Score=72.43 Aligned_cols=188 Identities=15% Similarity=0.097 Sum_probs=133.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
.+|+..-+....|..+++.|+.++|..+++..-...+++...+-.+-.+|...|++++|..+|++++..+|+ -..++.+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 457777788899999999999999998888777777788889999999999999999999999999999999 8888888
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCC---------HHHHHHHHHHHHhcC-CChh-hHHHHH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV-AAGD---------MEQAVQAYVTALQYN-PDLY-CVRSDL 150 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~---------~~~A~~~~~~al~~~-p~~~-~~~~~l 150 (904)
=.+|.+.+.|.+=.+.--+..+..|.++..+.....+.. .... ..-|....++.++.. +-.. .-....
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 889999888877666666666677887654433333333 2222 234556666666655 2111 112233
Q ss_pred HHHHHHcCChHHHHHHHH-------------HHHhhHHHHHHcCCHHHHHHHHh
Q psy17306 151 GNLLKALGRLDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 191 (904)
-.++..+|++++|.+.+. ....-...+...+++.+-.++..
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 356667888888888872 11123445555666665555554
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0005 Score=73.65 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=54.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--------------------cCcccHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK--------------------QNPLLAEA 78 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~~ 78 (904)
...|+|+.|..+++. +...|+....|..++.+.+..|+.--|..+|...-. +..+-...
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f 533 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF 533 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH
Confidence 568999999887765 567888778888888888888887777776653311 11222345
Q ss_pred HHHHHHHHHHhCcHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENY 99 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~ 99 (904)
|..++.+...-.+|.+|...|
T Consensus 534 ykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 534 YKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 556666666666677666665
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-06 Score=94.12 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-NPLL----AEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
+..+-|++.+..+|++.-.|...-...+..++.++|.+.+++|+.. ++.. ...|..+-+....-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3456678888889999999999888889999999999999999874 4432 2244444444444466677788888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
+|.+... ....+..|..+|...+.+++|.++++.+++........|..++..+.+..+-+.|..++
T Consensus 1522 RAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL------------- 1587 (1710)
T KOG1070|consen 1522 RACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL------------- 1587 (1710)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH-------------
Confidence 8887642 35678888899999999999999999999988878889999999998888877777777
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch--hHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYR 258 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~ 258 (904)
.+++..-|. +.......|.+-++.|+.+.+...|+
T Consensus 1588 -------------------------------------------~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1588 -------------------------------------------KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred -------------------------------------------HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence 466666665 67788889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
-.+..+|...+.|.-+...-.+.|+.+.+...|++++.+.-
T Consensus 1625 gll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1625 GLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999997654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-08 Score=76.75 Aligned_cols=74 Identities=28% Similarity=0.404 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
|+...++.++|.+|..+|++++|+.+|++++++ ....-..+|..+.++.++|.++..+|++++|+++|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI----EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788999999999999999999999999973 22222234566889999999999999999999999999986
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-07 Score=76.79 Aligned_cols=100 Identities=21% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC--
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-- 696 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 696 (904)
+.+++.+|+++-..|+.++|+..|++++....+ .+....++..+|.++..+|++++|+..+++++...|+
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLS--------GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 357899999999999999999977776653321 3344679999999999999999999999999999888
Q ss_pred -cHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 697 -FLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 697 -~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
+..+...++.++...|++++|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999999999999999987765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-05 Score=75.09 Aligned_cols=220 Identities=19% Similarity=0.131 Sum_probs=127.9
Q ss_pred hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC---CCCHH-----HHHHHHHHHHHcCC
Q psy17306 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDFID-----GYINLAAALVAAGD 125 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~-----~~~~la~~~~~~g~ 125 (904)
..|+.+.|..+.+++-...|.-++++...-...+..|+|+.|++..+...... ++..+ .+...+.... .-+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCC
Confidence 34555555555555555555554444444444445555555555544433221 11110 1111111111 123
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHH
Q psy17306 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAI 205 (904)
Q Consensus 126 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 205 (904)
...|...-.++.++.|+...+-..-+..+...|+..++ -.+++.+-+. .++.....
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg-----------------------~~ilE~aWK~-ePHP~ia~ 300 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG-----------------------SKILETAWKA-EPHPDIAL 300 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh-----------------------hhHHHHHHhc-CCChHHHH
Confidence 44455555555555555544444455555555555444 4444433221 12223333
Q ss_pred HHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCH
Q psy17306 206 VCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-GDM 284 (904)
Q Consensus 206 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~ 284 (904)
.+......+.....++-..+.....|++.+....++..-+..|++..|..--+.+....|. ..++..++.+-... |+-
T Consensus 301 lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDq 379 (531)
T COG3898 301 LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQ 379 (531)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCch
Confidence 3333344444455555556788889999999999999999999999999999999999987 55677788887755 999
Q ss_pred HHHHHHHHHHHhhCC
Q psy17306 285 EQAVQAYVTALQYNP 299 (904)
Q Consensus 285 ~~A~~~~~~al~~~p 299 (904)
.++..++-++++.-.
T Consensus 380 g~vR~wlAqav~APr 394 (531)
T COG3898 380 GKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999997533
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-05 Score=73.45 Aligned_cols=256 Identities=9% Similarity=0.018 Sum_probs=159.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
-.+.++..|+|..++....+.-... ...+....+.+.|...|++..-+......- .....+...++.....-++-+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 3456677888888887766654333 667777777888888887765554443322 122345555666655556655
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 94 EALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 94 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
.-+....+.+.. ...+...+..-|.++..-|++++|.+..... .+.++...-..++.+..+.+-|...+
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~l---- 160 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKEL---- 160 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 555555444433 2233345555667778888888888877663 33444444555666666666665555
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH---HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV---CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
++..+.........+. ...........++.-.|+..-...|..+......+.+++.+|
T Consensus 161 -------------------k~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 161 -------------------KKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred -------------------HHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 2211111111111111 111122223444555556666766777888888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCc
Q psy17306 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ-AYVTALQYNPLL 301 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~ 301 (904)
+|++|...++.++..++++++++.++..+-...|...++.. ...+.....|.+
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999888888888766654 445555666776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.5e-07 Score=92.10 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=110.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
-.+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++ .+.+++..+|.++..+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~-----------ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIR-----------LLNEALKENPQDSELLN 238 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHH-----------HHHHHHHhCCCCHHHHH
Confidence 34455666778999999999999998876 55668999999999999999 66677778888899999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
..+..+...++++.|+...++++.+.|++...|+.|+.+|..+|+++.|+-.++.+--..
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999999998887654433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-07 Score=81.26 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC
Q psy17306 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM---EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~ 677 (904)
++.|.+.++.....+|.+++.+++.|.++..+.++ .++.+.++.++. -|++++.++|+...+++++|.+|..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAis----K~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS----KFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH----HHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH----HHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999887654 568888888887 78888888898888888888888776
Q ss_pred CC-----------HHHHHHHHHHHHhcCcCcHHH
Q psy17306 678 GE-----------IWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 678 g~-----------~~~A~~~~~~al~~~p~~~~a 700 (904)
+. |++|..+|++|...+|++...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 53 566666666666666665443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.2e-06 Score=77.40 Aligned_cols=161 Identities=21% Similarity=0.195 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYS 80 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 80 (904)
-+..|+..|...++.|++++|+..|+.+....|.+ ..+...++.++++.+++++|+..+++.+.+.|++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35679999999999999999999999999988864 5789999999999999999999999999997764 55788
Q ss_pred HHHHHHHHh--------CcHHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 81 NLGNVYKER--------GQLQEALENYRHAVRLKPDFID---G--------------YINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 81 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~---~--------------~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
..|.+++.. .-..+|+..|+..+...|++.- + =..+|..|.+.|.+-.|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 888887643 2246788999999999988631 1 13568889999999999999999
Q ss_pred HHhcCCCh---hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 136 ALQYNPDL---YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 136 al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
+++..|+. .+++..+..+|..+|-.++|...-
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99987765 467788888888888888886554
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-05 Score=72.36 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=128.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..-|.++...|++++|+..... -.+.++...--.|+.++.+.+-|....+++.+++.+ ..+.
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~----------------~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLt 173 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL----------------GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLT 173 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHH
Confidence 5567788899999999987765 223444455556788888999999999999998766 3444
Q ss_pred HHHHHHHH--cC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 624 NLAAALVA--AG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 624 ~lg~~~~~--~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.||..+.. .| ++.+|.- .|+..-+.-|-.+..+..++.|+..+|++++|...++.+|..++++|+
T Consensus 174 QLA~awv~la~ggek~qdAfy-----------ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFY-----------IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred HHHHHHHHHhccchhhhhHHH-----------HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 45554443 33 5777777 555555555667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhh-cccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSS-YFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
++.|+-.+-...|...++.+-+-..+ ...|+. ....+...+-.+++...
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h----~~vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH----PFVKHLNEKEAEFDRLV 292 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH
Confidence 99999999999999888766554443 333332 23344444444554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=72.53 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
+..|++++|+..|++++..+|++.++++.+|.+++..|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666667777776666666666666666666666677777766666666666666655555554
|
... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-08 Score=94.91 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=93.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|+-|+++|.|++|+.+|.+ ++..+|.++..+.+.|.+|.++..+..|...+..++.++..+..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~-----------~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYST-----------AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhh-----------hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 6789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+.|.+-..+|...+|.+.++.+|.+.|+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999999999999998884
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=71.69 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456677777777777777777777777777777777777777777777777777766655555543
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=75.75 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=59.6
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----C---cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL----D---PNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~---p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+|+.+.++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.++..+|++++|+++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4677889999999999999999999999999987 2 334778999999999999999999999999864
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=82.86 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGN 84 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 84 (904)
++..|..++..|+|..|...|...++..|++ +.++++||.+++.+|+++.|...|..+++..|. .+++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666667777777777777766666653 456666666666666666666666666665443 3556666666
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDG 112 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 112 (904)
+...+|+.++|...|+++++..|....+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666666666666666666665544
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0017 Score=66.77 Aligned_cols=176 Identities=13% Similarity=0.007 Sum_probs=121.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL-------LAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
+..+..+-.-.|++.+|++......+ .....|. .+..++.+|.-....+.++.|...|..+.++-
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~--------w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKN--------WCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--------HHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 45566677778999999987776222 2223343 35678888888888999999999999999874
Q ss_pred CC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 616 PD-F--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 616 p~-~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
.. + +.+-.++|.+|.+.|+-+.--+..+. +.|.. ...+...-..+.+++-.|...+.++++.+|...+.+.|+
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 33 3 33557899999998876654442221 11100 000000001245788889999999999999999999999
Q ss_pred cCcC------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 693 LDPN------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 693 ~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
...- .+-.+.-||.+..-.|+..++.+..+-++.....
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 8511 1334667888999999999999999888776544
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0025 Score=68.53 Aligned_cols=140 Identities=16% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHH------Hhc----CcccH-HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLA------IKQ----NPLLA-EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 115 (904)
..|.++-+..++++|+++|++. +++ .|... ..--.-|.-+...|+++.|+..|-.+- ....
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~k 737 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIK 737 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHH
Confidence 3344444555566666665532 221 22211 112233555566677777777665531 2223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH---HHHhhHHHHHHcCCHHHHHHHHhh
Q psy17306 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC---VRSDLGNLLKALGRLDEAKNLHTE 192 (904)
Q Consensus 116 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 192 (904)
..........|.+|+..++....... ....+-.++.-|...|+++.|.++|. ....-..+|.+.|++++|..+-.+
T Consensus 738 aieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHH
Confidence 33344455667777777665543322 23456677888999999999998882 444556677778888888777765
Q ss_pred cCC
Q psy17306 193 NIK 195 (904)
Q Consensus 193 ~~~ 195 (904)
...
T Consensus 817 ~~~ 819 (1636)
T KOG3616|consen 817 CHG 819 (1636)
T ss_pred hcC
Confidence 444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00042 Score=69.00 Aligned_cols=202 Identities=16% Similarity=0.091 Sum_probs=141.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHc
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAA 123 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 123 (904)
..|.+..-.|+-..|.+.-.++-++-.. .+.++..-++.-.-.|+++.|.+-|+.++. +|.. .-.+..|-.-....
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 3455666778888888888777644222 355666777788888999999999988774 3332 11222222233468
Q ss_pred CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHH
Q psy17306 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN 203 (904)
Q Consensus 124 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 203 (904)
|+.+.|+.+-+++-..-|.-+.++...-...+..|+|+.|+++.+ .....
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd----------------~~~~~-------------- 217 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD----------------AQRAA-------------- 217 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH----------------HHHHH--------------
Confidence 999999999999999999888888777778888899988888771 11000
Q ss_pred HHHHhhcCCCcchHHHhhHHHHHhhcC---chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 204 AIVCNYGGRKPTTLESAHFSTLAIKQN---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 204 ~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
+.++.+ ......+...+.... ..+...|...-.++.++.|+...+-..-+..+++
T Consensus 218 ---------------------~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 218 ---------------------KVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred ---------------------HhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 011000 011222222233222 2457889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q psy17306 281 AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 281 ~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+..++-.+++.+.+..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ccchhhhhhHHHHHHhcCCCh
Confidence 999999999999999988855
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-06 Score=68.76 Aligned_cols=103 Identities=27% Similarity=0.288 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.+-..|......|+.+.|++.|.+++.+.|..+.+|+|.+..+.-+|+.++|+..+++++++.... .-....+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-------trtacqa 117 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-------TRTACQA 117 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------chHHHHH
Confidence 455668888899999999999999999999999999999999999999999999666666543221 1123568
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+...|.+|..+|+.+.|...|+.|-++...
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 899999999999999999999999988543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-06 Score=81.97 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
-.|+.|.-+...|+|..|...|..-++..|++ +.++++||.+++.+|++++|...|..+.+..| .+|.-
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P--------~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP--------KSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC--------CCCCC
Confidence 37888999999999999999999999999886 57999999999999999999997775555333 36777
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+++++.||.+...+|+.++|...|+++++..|..+.+...
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8999999999999999999999999999999998776543
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.8e-06 Score=68.15 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=99.8
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-- 618 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 618 (904)
..+...|......|+.+.|++.|.+ ++...|..+.+|++.+..+.-+|+.++|++.+++++++..+.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~q-----------al~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQ-----------ALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH-----------HHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 3446678888999999999999999 999999999999999999999999999999999999996443
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh-HHHhhhcCcchHHHHHHHHHHH
Q psy17306 619 --IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC-YLKAIETRPDFAVAWSNLGCVF 674 (904)
Q Consensus 619 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~p~~~~a~~~lg~~~ 674 (904)
-.++...|.+|..+|+-+.|...|+.+-++.... -.+.+.++|--+-.--.|+.++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f 171 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF 171 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3578899999999999999999888887766542 2345566775444434444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-05 Score=72.25 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH---HHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID---GYI 114 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 114 (904)
.+.-++.-|...+..|++++|...|+.+...+|.. ..+...++.++++.+++++|+..+++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988764 568899999999999999999999999999888754 577
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCH
Q psy17306 115 NLAAALVAA--------GDMEQAVQAYVTALQYNPDLYCV---RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183 (904)
Q Consensus 115 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~ 183 (904)
..|.+++.. .-..+|+..|+..+...|++.-+ ...+..+--
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d---------------------------- 164 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND---------------------------- 164 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH----------------------------
Confidence 777776643 22457888888899999987422 222111111
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 184 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.-+..-..+|+.|.+.|.+..|+..++.+++.
T Consensus 165 ------------------------------------------------~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 165 ------------------------------------------------ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 11333456778888888888888888888887
Q ss_pred CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 264 KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 264 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 197 y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 197 YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 6554 3577777888888888888776554444444544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.5e-07 Score=70.16 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
+|+..+++++|+.++++++..+|.++..+..+|.++..+|++.+|+..|+++++..|+++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3444444444444444444444444444444444444444444444444444444444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.7e-07 Score=70.49 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
.+|...+++++|++ .+.+++..+|+++..|..+|.++..+|++.+|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~-----------~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALE-----------VLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHH-----------HHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 44555555555555 444444455555555555555555555555555555555555555554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=69.57 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=122.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
...+.=|++.+.....+.+...|. ....+.+|......|++.+|...|++++. +...++..+..+++..+..+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 334444566666666666666665 45678899999999999999999999886 4556788899999999999999999
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 96 LENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 96 ~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+++..+.+|. .++....+|.++...|++.+|...|+.++...|+ +.+....+..+.++|+..++...+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999998875 4778899999999999999999999999998886 667778888889999888887665
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.5e-05 Score=86.81 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=184.4
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ-ETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
.|+.+..|+.--...++.++.++|.++.+++|.. ++. -..+|..+-++...-|.-+.-.+.|++|.+... ....
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHH
Confidence 4666777887777888999999999999999874 443 234566666666666777788899999988643 2568
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKA 156 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 156 (904)
+..|..+|...+++++|.+.++..++........|..+|..++..++-+.|...+.+|++.-|. +.......|.+-++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999999998888899999999999999999999999999999998 67777888888888
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHH
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (904)
.|+.+.+..+| +..+...|...+.
T Consensus 1613 ~GDaeRGRtlf--------------------------------------------------------Egll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1613 YGDAERGRTLF--------------------------------------------------------EGLLSAYPKRTDL 1636 (1710)
T ss_pred cCCchhhHHHH--------------------------------------------------------HHHHhhCccchhH
Confidence 88888888877 6778889999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHc
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLK--PDFIDGYINLAAALVAA 281 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 281 (904)
|.-+...-.++|+.+.+...|++++.+. |.....++..-.-|.+.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999864 55555555555555544
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-05 Score=76.67 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcCcc--------cHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA-IKQNPL--------LAEAYSN 81 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~ 81 (904)
.......+++..+...+....+-++.+..+.+.+++..+..++..|++.+|.+.+... +...|. ...+|.+
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 3445556667777777777777777777778888888888888888888888877654 222222 3446778
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhc---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRL---------K---------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
+|.++++.|.|.-+..+|.++++- . ......+++.|..|...|++-.|.++|.++......+
T Consensus 289 lGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred cceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888851 1 1234577888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHH
Q psy17306 144 YCVRSDLGNLLKA 156 (904)
Q Consensus 144 ~~~~~~la~~~~~ 156 (904)
|..|..++.++..
T Consensus 369 PrlWLRlAEcCim 381 (696)
T KOG2471|consen 369 PRLWLRLAECCIM 381 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=93.03 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=66.9
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH---HHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA---YINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+.+|+++.+|+++|.+|..+|++++|+..|++|++++|+++.+ ++|+|.+|..+|+.++|+.+|+++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999865 999999999999999999999999986
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-07 Score=90.92 Aligned_cols=82 Identities=26% Similarity=0.322 Sum_probs=71.5
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.+|+++.+|+++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+..++++++..+..|. .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~-~ 148 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS-T 148 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH-H
Confidence 589999999999999999999999999999999999999854 999999999999999999999999987443443 2
Q ss_pred hhcCcc
Q psy17306 657 IETRPD 662 (904)
Q Consensus 657 l~~~p~ 662 (904)
+..+|+
T Consensus 149 i~~Dpd 154 (453)
T PLN03098 149 ILNDPD 154 (453)
T ss_pred HHhCcc
Confidence 344553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-06 Score=71.54 Aligned_cols=109 Identities=24% Similarity=0.278 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
.+..++.-|......|+|++|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++-++++|. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------H 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C
Confidence 46789999999999999999999999999988764 568999999999999999999977766655554 5
Q ss_pred cchHHHHHHHHHHHHhCCC---------------HHHHHHHHHHHHhcCcCcHHH
Q psy17306 661 PDFAVAWSNLGCVFNAQGE---------------IWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a 700 (904)
|+.+.+++..|.+++.+.. ..+|...|++.+...|++..+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6678899999999999876 888999999999988887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-05 Score=66.20 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVR-LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLL 154 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 154 (904)
-.+.+|..+...|++.+|...|++++. +.-.++..+..++...+..+++.+|...+++..+.+|.. ++....+++++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 344455555555555555555555543 233344445555555555555555555555555544432 33333444444
Q ss_pred HHcCChHHHHHHH
Q psy17306 155 KALGRLDEAKDLY 167 (904)
Q Consensus 155 ~~~~~~~~A~~~~ 167 (904)
...|++.+|...|
T Consensus 171 aa~g~~a~Aesaf 183 (251)
T COG4700 171 AAQGKYADAESAF 183 (251)
T ss_pred HhcCCchhHHHHH
Confidence 4444444443333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-06 Score=74.00 Aligned_cols=97 Identities=22% Similarity=0.333 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 556 IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 556 ~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
|+.|.+.++. ....+|.+++.+++-|.++..+.+ +++|+.-|+.+|.++|+..++++++
T Consensus 7 FE~ark~aea-----------~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 7 FEHARKKAEA-----------AYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHH-----------HHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHH-----------HHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3455555555 788999999999999998876643 5778889999999999999999999
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 626 AAALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 626 g~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
|.+|..++ +..+|..+|+++.+ +|++++..+|++....
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~----~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATE----YFQKAVDEDPNNELYR 117 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH----HHHHHHhcCCCcHHHH
Confidence 99998875 56688899999998 9999999999985433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0047 Score=63.24 Aligned_cols=129 Identities=12% Similarity=-0.037 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNT-----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
+..+|..+..++++.+|..+|.++.+...+.+ +++..+..-.+-.++.+.-...+...-+..|..+....-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 56788999999999999999999977655443 3333444445556677777777766667788888888899999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC----CCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 86 YKERGQLQEALENYRHAVRLK----PDF-----------IDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~----p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.++.+.|.+|++.+......- |.. ...-...|.++...|++.++...+++.+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999999999999887665541 111 111234678899999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.9e-05 Score=69.22 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
..+.+.+..++...|.|.-.+..+.+.++.+ |..+.....||.+.++.|+.+.|..+|+..-+.. ..+..-...
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-----~kL~~~q~~ 251 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-----QKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----hhhhccchh
Confidence 3467788889999999999999999999998 6678888899999999999999999887554311 112223344
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
-.+..+.+.+|.-..++..|...|.+.+..||.++.+..+-|.|+.-.|+..+|++..+.++...|.+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 56778889999999999999999999999999999999999999999999999999999999998864
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0086 Score=61.77 Aligned_cols=207 Identities=13% Similarity=0.006 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHH
Q psy17306 495 VLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFS 574 (904)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~ 574 (904)
++..+.-+-...++...+.+.+.+........|...-.. ..-..+...+|......+.++.|...|..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr---~~~~~ih~LlGlys~sv~~~enAe~hf~~--------- 392 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR---AHEAQIHMLLGLYSHSVNCYENAEFHFIE--------- 392 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH---HhHHHHHHHHhhHhhhcchHHHHHHHHHH---------
Confidence 445556666677888888888877777777777632111 22234557888888888999999999988
Q ss_pred HHHHHhCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------HHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 575 TLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----------IDGYINLAAALVAAGDMEQAVQA 641 (904)
Q Consensus 575 ~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~ 641 (904)
+.+.... -+.+-.++|.+|.+.|+-+. .|+-.-.+.|.+ ..+++-.|...+.++++.||...
T Consensus 393 --a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 393 --ATKLTESIDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRF 467 (629)
T ss_pred --HHHhhhHHHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4443221 24566789999999877544 333333345542 34677888889999999999998
Q ss_pred HHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---cCcHHHHHHH---HHHHHHhcc--
Q psy17306 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD---PNFLDAYINL---GNVLKEARI-- 713 (904)
Q Consensus 642 ~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~l---a~~~~~~g~-- 713 (904)
..+.|++.. +-..+--.+-.+..||.+....|+..++.+..+-++++. |+.+.-++.. -.++...|+
T Consensus 468 l~e~Lkman-----aed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 468 LRETLKMAN-----AEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred HHHHHhhcc-----hhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcch
Confidence 888887541 112222234567788999999999999999999998883 5555544443 345566666
Q ss_pred hhHHHHHHHH
Q psy17306 714 FDRANTLFYV 723 (904)
Q Consensus 714 ~~~A~~~~~~ 723 (904)
.+...+.|++
T Consensus 543 ~~~e~e~~~~ 552 (629)
T KOG2300|consen 543 NEMENEAFRK 552 (629)
T ss_pred hhHHHHHHHH
Confidence 5555555543
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.01 Score=62.14 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 584 LAEAYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+...++.++.--...-+ ++..-+.+++++.+...++ -+|.++-..-.+..-...|...|.++-+. ..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~---------~r 397 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED---------KR 397 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc---------cC
Confidence 44455555554443333 7778888888888754433 35666666666666677888855544331 11
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
.+....+...+-. |...++..-|...|+-.|...++.+..-......+...++-..|...|++++.+...
T Consensus 398 ~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 398 TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 2333333333322 456799999999999999999999999999999999999999999999999998444
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-05 Score=71.51 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----C--cccHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----N--PLLAEAY 79 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~ 79 (904)
.+...+..+..+...|.|.-.+..+.++++.+ |..+.....+|.+.++.||.+.|..+|+++-+. + ..+..+.
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34556677888889999999999999999988 568888999999999999999999999966442 1 2345677
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+.+.++...+++..|...|.+++..+|.++.+-.+.|.|..-+|+..+|++..+.++...|..
T Consensus 256 ~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 256 MNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 7888899999999999999999999999999999999999999999999999999999999975
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0015 Score=68.49 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 592 GNVYKERGQLQEALENYRHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
|..+...|+...|+.++..++-..|... ....+|+.++...|-..+|-.+ +.+++.+....+..++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~-----------l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKL-----------LLQALAINSSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHH-----------HHHHHhhcccCchHHHhc
Confidence 3444567999999999999999988743 4688999999999988999994 445555556667889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 671 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
|+++..+.+.+.|++.|+.|+.++|+++.+-..|-.+-+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999998887777665
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00043 Score=63.96 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=114.4
Q ss_pred hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHH
Q psy17306 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDME 127 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~ 127 (904)
-.+++++|.++|.++- ..|...++|..|=..|.++-... .+....+...+.||. .+++.
T Consensus 26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence 3457888888777663 34444455555555555554431 112345555556654 45888
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc-CCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL-GRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 128 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
+|+.++++++++..+ +|++..|.... ..+|.+|... .++++|+..|+++.+-.
T Consensus 91 eAv~cL~~aieIyt~--------------~Grf~~aAk~~---~~iaEiyEsdl~d~ekaI~~YE~Aae~y--------- 144 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTD--------------MGRFTMAAKHH---IEIAEIYESDLQDFEKAIAHYEQAAEYY--------- 144 (288)
T ss_pred HHHHHHHHHHHHHHh--------------hhHHHHHHhhh---hhHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Confidence 899888888876433 33333332222 2333333322 44444444444221100
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHH
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-------DGYINLAAALV 279 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~ 279 (904)
+.-+.....-..+...+..-...++|.+|+..|++.....-++. +.++.-|.|+.
T Consensus 145 ------------------k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 145 ------------------KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred ------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 11111222234566677777889999999999999887655543 34566788898
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
...+.-.+...+++....+|...
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCccc
Confidence 88998889999999999999873
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.016 Score=65.11 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+.+..|..+|.+..+.|...+|++.|-++ +++..+.....+-.+.|.|++-+.++.-+-+.....
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 34788999999999999999999988775 677888888888889999999998888777655443
|
|
| >KOG2276|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-06 Score=84.87 Aligned_cols=206 Identities=56% Similarity=0.980 Sum_probs=174.4
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
+.+...+.+...+.+++++.+++.+|..+.++...++.+...++++.+|.+++.+.++.......++.++..++.|..+.
T Consensus 212 G~~yf~i~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~t 291 (473)
T KOG2276|consen 212 GVIYFQIEVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEAT 291 (473)
T ss_pred cceeEEEEEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccc
Confidence 44455566677789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
.....+..++...++.||+|++++++++-.+++..|..+....+....+++++.|....+.....+..++...|..++.+
T Consensus 292 g~~~l~~~~k~~~l~~rWryPSLsihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~ 371 (473)
T KOG2276|consen 292 GSQMLPTDDKKRILMHRWRYPSLSIHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSP 371 (473)
T ss_pred cccccccCchHHHhhhhcccCccceecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87555555778899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCC
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS 555 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 555 (904)
++..-.......-.-.+|+++.....-+.+..+|..--..-..-|.
T Consensus 372 N~l~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gvePd~~ReGgS 417 (473)
T KOG2276|consen 372 NKLKVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVEPDFTREGGS 417 (473)
T ss_pred CceEEeecCCCCceecCCCchhHHHHHHHHHHhhCCCCCccccCCc
Confidence 8777666666666677888887775555555555444443333333
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.9e-05 Score=70.89 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+-..|..++....|..|+..|.+++..+|..+..+...+.|+++..+++.+.....++++++|+.+.+++.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhCcHHHHHHHHHHHHhc
Q psy17306 87 KERGQLQEALENYRHAVRL 105 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~ 105 (904)
+....|++|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 6666666666666666443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.06 E-value=8e-06 Score=55.87 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
|.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999999863
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-05 Score=71.69 Aligned_cols=94 Identities=21% Similarity=0.220 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS 668 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~ 668 (904)
-.-|..++....|..|+.+|.++|.++|..+..+.+.+.++++..+++.+.. ...++++++|+.+.+++
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~-----------dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEE-----------DCRRALQLDPNLVKAHY 82 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhh-----------hHHHHHhcChHHHHHHH
Confidence 3445666677788999999999999999988999999999999999999988 88888889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 669 NLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 669 ~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+|.+......+++|+..+.+|..+
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999776
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.031 Score=58.82 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=87.3
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 32 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
++-++.+|.+.++|+.+..-+..+ .+++....|++.+...|..+.+|.......+..++|+.-...|.+++..--+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 566788999999999998877666 8999999999999999999999999999999999999999999999865322 33
Q ss_pred HHH-HHHHHHHHcCCHHHHHHH----HHHHH---hcCCChhhHHHHHHHHHH
Q psy17306 112 GYI-NLAAALVAAGDMEQAVQA----YVTAL---QYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 112 ~~~-~la~~~~~~g~~~~A~~~----~~~al---~~~p~~~~~~~~la~~~~ 155 (904)
.|. .+..+-...|+...+... |+-++ ..++....+|...+..+.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 332 233333344444443333 33222 236666677777666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.2e-06 Score=52.58 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=20.7
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 718 (904)
|++|++++|+++.++++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00022 Score=74.47 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=85.3
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q psy17306 13 ELAHRE-YQAGDYESAERHCMQLWRQETNNT--GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 13 ~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 89 (904)
..|..| ...|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..|+...|....-++.+|.++.+.
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml 296 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML 296 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence 344444 468999999999999998877643 47889999999999999999999999998888777799999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~ 111 (904)
|.+...+.+|..+.+.+|....
T Consensus 297 ~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 297 GEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred hhhhhhhhhhhhhhccCcchhH
Confidence 9999999999999999887543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=54.40 Aligned_cols=44 Identities=32% Similarity=0.416 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
+.+++.+|.+|...|++++|++.|+++++.+|+++.++..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999998853
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0013 Score=64.22 Aligned_cols=125 Identities=16% Similarity=0.004 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-CCCC---HHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF---IDGYINLAA 118 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~ 118 (904)
+-...-+.+....|++.+|-...++.++..|.+..++..--.+++..|+...-...+++++.. +|+. .-+.-.++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 445555667788999999999999999999999999988889999999999999999999887 6655 445566788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
++...|-|++|.+..+++++++|.+.-+....+.++...|++.++.+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 8899999999999999999999999999999999999999999998887
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.8e-06 Score=51.33 Aligned_cols=33 Identities=36% Similarity=0.667 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 639 (904)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367788888888888888888888888887775
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00029 Score=65.42 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFI----------DGYINLAAALVAAGDMEQAVQAYVTAL 646 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al 646 (904)
..++...|+-++..|+|.+|...|+.|+.. .|..+ ..+.|.+.|+...|+|-++++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle------ 251 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE------ 251 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH------
Confidence 457788899999999999999999998754 35443 356777777777777777777
Q ss_pred hhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 647 ~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.....+..+|.+..+|+..|.++...=+..+|...|.++|+++|.-..+
T Consensus 252 -----h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 -----HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred -----HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 6666667777777888888887777777778888888888887765443
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00032 Score=68.22 Aligned_cols=157 Identities=11% Similarity=-0.065 Sum_probs=132.1
Q ss_pred chhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCc---HHHH
Q psy17306 547 PDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDF---IDGY 622 (904)
Q Consensus 547 ~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~a~ 622 (904)
+.+....|++.+|...+.+ .+...|.+.-++..--.+++..|+...-...+++++-. +|+. ....
T Consensus 110 aai~~~~g~~h~a~~~wdk-----------lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDK-----------LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHH-----------HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3445677889999999999 99999999999888888999999999999999999987 6665 4556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC----cH
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----FL 698 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~ 698 (904)
-.++..+...|-|++|.+ ...++++++|.+..+...++.++...|++.++.+...+.-..-.. ..
T Consensus 179 GmyaFgL~E~g~y~dAEk-----------~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas 247 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEK-----------QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS 247 (491)
T ss_pred HHHHhhHHHhccchhHHH-----------HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh
Confidence 677888999999999999 788888999999999999999999999999999999876554211 13
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.-|.+-|.++.+.+.++.|+++|..-.
T Consensus 248 HNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 248 HNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 346778999999999999999996543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=68.05 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCH----------HHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWR--------QETNNT----------GVLLLLSSIHFQCRKLDKSAHFSTLAI 69 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al 69 (904)
...+-+.|+.++..|+|.+|...|..++. ..|..+ ..+.+...|++..|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44677899999999999999999988853 234332 244455555566666666666666666
Q ss_pred hcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 70 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
..+|.|..+++..|.+....-+.++|...|.++++++|...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 66666666666666666555556666666666666655543
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0033 Score=58.75 Aligned_cols=123 Identities=22% Similarity=0.214 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-----CCCHHHH
Q psy17306 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL------AEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGY 113 (904)
Q Consensus 45 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 113 (904)
+..-+.+|...++|++|..++.++++-..++ +.++-..|.....+..+.++..+|+++..+. |+.+..-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 3344566677777777777777777543332 2345566666677777777777777777652 4433333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+-=....-++++|+..|++++.+-..+ .+.+...++++.+..++++|...+
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 333444445667788888888877653222 244556677777777777776666
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.1e-05 Score=78.86 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=106.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+-+.-.+.-+.++.|+. .+.++++++|+.+..+.+.+.++.+.+++..|+..+.+|++++|....+|+.
T Consensus 9 ~ean~~l~~~~fd~avd-----------lysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~r 77 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVD-----------LYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVR 77 (476)
T ss_pred hHHhhhcccchHHHHHH-----------HHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeee
Confidence 44566677788999999 7778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 704 LGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 704 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
.|.+....+++.+|...|++.....|++.++...+..|...+.+..-.
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe 125 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE 125 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999888765433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.2e-05 Score=49.53 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=59.25 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC-----cc-cHHHHHHHHHHHHHhCcHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN-----PL-LAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A 95 (904)
+.+++|.++|.++ |++|....+|..|-..|-++-..+ .. .+..+...+.||. .++..+|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 4677777777666 455555566666666666655431 11 2345555555654 4599999
Q ss_pred HHHHHHHHhcCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHH
Q psy17306 96 LENYRHAVRLKPDFID------GYINLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~ 162 (904)
+.++++++++..+... .+..+|.+|..- .++++|+.+|+++-+..... -..+...+..-...++
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq--- 169 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ--- 169 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH---
Confidence 9999999988655433 355788888764 88999999999987654322 1223333333334444
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|.+|+.+|++.....-. ...++-. --..++.-|.
T Consensus 170 --------------------Y~~Ai~iyeqva~~s~~------------------------n~LLKys--~KdyflkAgL 203 (288)
T KOG1586|consen 170 --------------------YSKAIDIYEQVARSSLD------------------------NNLLKYS--AKDYFLKAGL 203 (288)
T ss_pred --------------------HHHHHHHHHHHHHHhcc------------------------chHHHhH--HHHHHHHHHH
Confidence 45555555431110000 0011110 1234556677
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDG 270 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 270 (904)
+++...+.-.+...+++..+++|...+.
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 8888788888888899999999986553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0018 Score=67.45 Aligned_cols=140 Identities=13% Similarity=0.193 Sum_probs=96.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
-...++..++..-++...++++.+|+.+.++..++.-. ..-..+|..+++++++.... .+.........|..-+
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~----~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEA----SLGKSQFLQHHGHFWE 248 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHH----hhchhhhhhcccchhh
Confidence 34456788888888888889999998888888777532 23457788888888765332 1111111112221111
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 95 ALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 95 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.....+. ...+...+|.|.+++|+.++|++.++..++.+|. +..++.+|..++...+.+.++..++
T Consensus 249 -------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 249 -------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred -------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111111 1446678999999999999999999999988775 4578899999999999999988777
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0084 Score=61.87 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---hCcHHHHHHHHHHHH-hcCCCCHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ----NPLLAEAYSNLGNVYKE---RGQLQEALENYRHAV-RLKPDFIDG 112 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~ 112 (904)
++++...+-.+|....+|+.-+.+.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5677778888899999999999999887665 44567788899999998 999999999999954 556778999
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH-HHHHHHHhhHHHHHHcCC
Q psy17306 113 YINLAAALVA---------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK-DLYCVRSDLGNLLKALGR 182 (904)
Q Consensus 113 ~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~l~~~~~~~g~ 182 (904)
+..+|.+|-. ....++|+.+|.++.+++|+. -.-.+++.++...|...+.. +.-.....+.....+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg- 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG- 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc-
Confidence 9999999853 234789999999999999654 44456666666666533332 22211111111111111
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy17306 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262 (904)
Q Consensus 183 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 262 (904)
....-.+...+-.++.+..-.|++++|+..+++++.
T Consensus 298 --------------------------------------------~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 298 --------------------------------------------SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred --------------------------------------------cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 111223345556677888889999999999999999
Q ss_pred hCCCCHH
Q psy17306 263 LKPDFID 269 (904)
Q Consensus 263 ~~p~~~~ 269 (904)
..|....
T Consensus 334 l~~~~W~ 340 (374)
T PF13281_consen 334 LKPPAWE 340 (374)
T ss_pred cCCcchh
Confidence 8766543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00077 Score=68.56 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
+|+.......+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566667777777889999999999987666678899999999666 5666669999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 89 RGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.|+.+.|...|++++..-|... ..|......-...|+.+...+..+++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866654 5777778888888999999999999998888743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.9e-05 Score=77.74 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
..+...+..++|+.|+..|.++|+++|+++..+.+++.++.+.+++..|+..+.++++.+|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
.+|...|+....+.|+++.+...+..+-.
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 77777777777777777766666655543
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0051 Score=57.56 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=117.9
Q ss_pred HHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
.-+..|....+++++...+..+.+..+.+.+.-... .+|...+.+......+.++..+|+++.. .+.+
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA-------KayEqaamLake~~klsEvvdl~eKAs~----lY~E- 103 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA-------KAYEQAAMLAKELSKLSEVVDLYEKASE----LYVE- 103 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHH-
Confidence 445566677777777777766555555444332222 4556666666677777777777777221 1110
Q ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.-.|+.+..-...+-=....-++++|+..|++++.+-... .+.+...+.++.+..++++|-..+.+-..
T Consensus 104 -~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~---- 178 (308)
T KOG1585|consen 104 -CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGV---- 178 (308)
T ss_pred -hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhh----
Confidence 1133333333333333344567888888888887763221 23455667777778888887776555432
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL----DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
....+..-|+...++...-.+|....+|..|..+|+..-++ .|++..+..+|-..| ..|+.++...+.
T Consensus 179 -~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 179 -AADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred -HHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 11112333444455666666666677888888888887776 455566666665544 355666555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.4e-05 Score=47.86 Aligned_cols=34 Identities=47% Similarity=0.623 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0027 Score=64.62 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777777888888888876555567777777777666 4555558888888888888777777777777777
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh---
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL--- 233 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 233 (904)
.++.+.|..+| ++++..-+..
T Consensus 83 ~~d~~~aR~lf--------------------------------------------------------er~i~~l~~~~~~ 106 (280)
T PF05843_consen 83 LNDINNARALF--------------------------------------------------------ERAISSLPKEKQS 106 (280)
T ss_dssp TT-HHHHHHHH--------------------------------------------------------HHHCCTSSCHHHC
T ss_pred hCcHHHHHHHH--------------------------------------------------------HHHHHhcCchhHH
Confidence 77776666666 3444333332
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
...|......-...|+.+...++.+++.+..|..
T Consensus 107 ~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 107 KKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 2566667777777788888888888888877763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0029 Score=61.53 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH--HHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG--NVYK 87 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~ 87 (904)
.-+..+......|++.+|...|..++...|.+.++...++.++...|+.+.|...+...-....... .....+ ..+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999988876432222211 111112 2222
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHcCChHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
+.....+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..++.+- .+..+...+-.++...|.-+.+.
T Consensus 215 qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 215 QAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3222222 2345566778999999999999999999999999999999888754 34567777777777777555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=46.75 Aligned_cols=34 Identities=56% Similarity=0.845 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00086 Score=65.54 Aligned_cols=102 Identities=22% Similarity=0.252 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ---NPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 117 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 117 (904)
+..+-.-|+-|+...+|..|..+|.+.|+. +|+ ++..|.++|.+.+..|+|..|+....+++.++|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 556667889999999999999999999986 343 5678889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 118 AALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 118 ~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.|++.+.++++|+.+.+..+.++-+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999988776544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00027 Score=45.19 Aligned_cols=34 Identities=38% Similarity=0.664 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+.+|+.+|.++...|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578888888888888888888888888888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=65.75 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=94.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc------------Ccc-
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET------------RPD- 662 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~------------~p~- 662 (904)
.+..+...-++.-++|++++|+.+++|..|+.=. ..-..+|.++|+++++.....+++.-.. .+.
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 4456677777777778888887777777666421 2335667777777776555433332111 111
Q ss_pred -hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 663 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN--FLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 663 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
...+-..+|.|..++|+.++|++.|+..++..|. +..++.+|..++...+.+.++...+.+--+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1345678999999999999999999999998775 5679999999999999999999999886543
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.014 Score=56.93 Aligned_cols=161 Identities=22% Similarity=0.156 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh-hHHHHHHHHH
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY-CVRSDLGNLL 154 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~ 154 (904)
...-+.-+.-....|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....+.. ........++
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 345556667778888899999999999998888888888899999999998888877765322211111 0100111222
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
.+.....+... +++.+..+|++.
T Consensus 214 ~qaa~~~~~~~---------------------------------------------------------l~~~~aadPdd~ 236 (304)
T COG3118 214 EQAAATPEIQD---------------------------------------------------------LQRRLAADPDDV 236 (304)
T ss_pred HHHhcCCCHHH---------------------------------------------------------HHHHHHhCCCCH
Confidence 22222211111 136667899999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
.+.+.+|..+...|+.+.|.+.+-..++.+. .+..+...+-.++...|.-+.+...+++
T Consensus 237 ~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 237 EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999999998888753 4456667777777777744444444443
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.02 Score=54.40 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=150.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH-HHH
Q psy17306 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC-RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ-EAL 96 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~ 96 (904)
.+...-..|+.+-..++..+|.+-.+|...-.++... .+..+-+++++.++..+|.|-.+|..+-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3455667788888888888888877777766666554 35677788888888888888888888888888888877 778
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHHHHHHhhHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~l~~ 175 (904)
+..+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+--|-.+|...--+... .|-.+.+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~----------- 202 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAE----------- 202 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHH-----------
Confidence 888888888888888888888888888888888888888888776665555443222211 11111110
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH-hC--CHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE-RG--QLQE 252 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g--~~~~ 252 (904)
....+.+..+.+...|++..+|..|..++.. .| .+..
T Consensus 203 ----------------------------------------le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~ 242 (318)
T KOG0530|consen 203 ----------------------------------------LERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSK 242 (318)
T ss_pred ----------------------------------------HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCch
Confidence 0111222347788899999999998888875 44 2444
Q ss_pred HHHHHHHHH-hhCCCCHHHHHHHHHHHH------HcCCHH---HHHHHHHHHH-hhCCC
Q psy17306 253 ALENYRHAV-RLKPDFIDGYINLAAALV------AAGDME---QAVQAYVTAL-QYNPL 300 (904)
Q Consensus 253 A~~~~~~al-~~~p~~~~~~~~la~~~~------~~g~~~---~A~~~~~~al-~~~p~ 300 (904)
-.......+ ......+..+-.+..+|. ..+.-+ +|...|+..- +.+|-
T Consensus 243 vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~Dpi 301 (318)
T KOG0530|consen 243 VVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPI 301 (318)
T ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcH
Confidence 444444444 333344555555555552 122222 4555565544 44553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.01 Score=54.00 Aligned_cols=132 Identities=19% Similarity=0.076 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLG 83 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 83 (904)
..+..+......+.. +.....++....+|.+. -+...++..+...|++++|+..++.++....+ ...+-.++|
T Consensus 55 ~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 55 AQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 344444444444444 44444555555554432 34556788899999999999999999865433 245678899
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
.+...+|.+++|+..+....... -.+......|.++...|+-++|+..|+++++.+++.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99999999999999887643211 123346678999999999999999999999987554
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0023 Score=62.71 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=87.3
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhC---Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQN---PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~---p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
++..|..-|+-|++..+|..|...|.+ .+... |+ ++..|.|+|.+....|+|..|+..+.+++..
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~-----------Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTE-----------GLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHH-----------HHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678899999999999999999999 66653 32 5678999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
+|.+..++++-+.|++.+.++.+|....+..+.+
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999966655543
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.048 Score=61.48 Aligned_cols=268 Identities=20% Similarity=0.119 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHhcCc
Q psy17306 9 IGLLELAHREYQ-----AGDYESAERHCMQLWRQ-----ETNNTGVLLLLSSIHFQCR-----KLDKSAHFSTLAIKQNP 73 (904)
Q Consensus 9 ~~l~~~a~~~~~-----~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p 73 (904)
.+....|.+++. ..|.+.|+.+++.+... .-.++.+.+.+|.+|.... ++..|+.++.++...
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-- 322 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-- 322 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--
Confidence 445556666554 36899999999998761 1125668889999999853 778899999998876
Q ss_pred ccHHHHHHHHHHHHHhC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 74 LLAEAYSNLGNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 74 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
.++.+.+.+|.++..-. ++..|..+|..|... .+..+.+.+|.||.. .-+...|..++.++.+.+ ++.+
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 44678889999987765 678999999999765 457889999999874 347899999999999887 4455
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH
Q psy17306 147 RSDLGNLLKAL-GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225 (904)
Q Consensus 147 ~~~la~~~~~~-~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 225 (904)
...++.++... +.++.+...+.....++.-.... ..+.-.......... .........+...+.+
T Consensus 399 ~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~---~a~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 464 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS---NAAYLLDQSEEDLFS-----------RGVISTLERAFSLYSR 464 (552)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh---HHHHHHHhccccccc-----------cccccchhHHHHHHHH
Confidence 55555554433 67766665552111111110000 000000000000000 0000111112222222
Q ss_pred HhhcCchhHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhC
Q psy17306 226 AIKQNPLLAEAYSNLGNVYKER----GQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---GDMEQAVQAYVTALQYN 298 (904)
Q Consensus 226 ~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~ 298 (904)
+ ....+..+...+|.+|+.- .+++.|...|.++.... ....+++|.++..- .....|.+++.++...+
T Consensus 465 a--~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 465 A--AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred H--HhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 2 2334567788888888754 46999999999998877 88899999988742 12788999999998876
Q ss_pred CCc
Q psy17306 299 PLL 301 (904)
Q Consensus 299 p~~ 301 (904)
...
T Consensus 540 ~~~ 542 (552)
T KOG1550|consen 540 SRA 542 (552)
T ss_pred chh
Confidence 655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.47 Score=54.62 Aligned_cols=217 Identities=13% Similarity=0.001 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHhcChhHHHHHHHhcccccccCCCC-cchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhH
Q psy17306 495 VLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH-PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHF 573 (904)
Q Consensus 495 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~ 573 (904)
+..+........++...+...++.........|.. ... ....+++..|..+...|+.+.|...|.+..-..
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~-----~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~--- 434 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYES-----LYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL--- 434 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhh-----hhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh---
Confidence 44455556667778888888888777777665552 111 112456888999999999999999998311100
Q ss_pred HHHHHHhCCch---HHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCcHHHHHHHHH-----HHH--HcCCHHHHH
Q psy17306 574 STLAIKQNPLL---AEAYSNLGNVYKERGQLQE----ALENYRHAVRLKPDFIDGYINLAA-----ALV--AAGDMEQAV 639 (904)
Q Consensus 574 ~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~lg~-----~~~--~~g~~~~A~ 639 (904)
...+....+.+ .-+..++..++...+.-.. +...+++.-....+.+..++..+. ++. ..-...++.
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k 514 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAK 514 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHH
Confidence 00022223322 2355677777776665433 333333322221112222222222 222 122345888
Q ss_pred HHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc---CcHHHHH------HHHHHHHH
Q psy17306 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP---NFLDAYI------NLGNVLKE 710 (904)
Q Consensus 640 ~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~------~la~~~~~ 710 (904)
..+.++++. +.+.+...--.+-++.-+|..++ .|+..+.......+..... +...... -+...+..
T Consensus 515 ~~l~~~L~~----~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~ 589 (608)
T PF10345_consen 515 RHLQEALKM----ANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEV 589 (608)
T ss_pred HHHHHHHHH----HHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888887763 32333333444556777888877 7888887777777776533 3343333 45566788
Q ss_pred hcchhHHHHHHHHh
Q psy17306 711 ARIFDRANTLFYVS 724 (904)
Q Consensus 711 ~g~~~~A~~~~~~a 724 (904)
.|+.++|.....+.
T Consensus 590 ~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 590 QGDRDKAEEARQQL 603 (608)
T ss_pred cCcHHHHHHHHHHH
Confidence 89999998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00018 Score=70.66 Aligned_cols=91 Identities=24% Similarity=0.241 Sum_probs=84.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH
Q psy17306 594 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673 (904)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~ 673 (904)
-....|.++.|++.|..++.++|.....+...+.++..+++...|+. .+..+++++|+.+.-|-..|.+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~air-----------D~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIR-----------DCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhh-----------hhhhhhccCcccccccchhhHH
Confidence 34566889999999999999999999999999999999999999999 8888889999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHhcCc
Q psy17306 674 FNAQGEIWLAIHHFEKAVSLDP 695 (904)
Q Consensus 674 ~~~~g~~~~A~~~~~~al~~~p 695 (904)
...+|++++|..++..+++++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999963
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.37 Score=52.15 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=112.7
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDG 621 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a 621 (904)
|....+.....|+++...-.|++ ++--.......|...+......|+.+-|-..+.++.++ .|..+..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~er-----------cli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i 368 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFER-----------CLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII 368 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHH-----------HHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH
Confidence 35555566677888888888887 65555566778888888888888888888878777776 4666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH---HHHHHHhc--CcC
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH---HFEKAVSL--DPN 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~---~~~~al~~--~p~ 696 (904)
...-+.+....|++..|...+++.. +.-|+...+-........+.|+.+.+.. .+.....- ++.
T Consensus 369 ~L~~a~f~e~~~n~~~A~~~lq~i~-----------~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 369 HLLEARFEESNGNFDDAKVILQRIE-----------SEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH-----------hhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 7777777788888888888555433 3336666666666666777777777773 33222222 111
Q ss_pred -cHHHHHHHHHH-HHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 697 -FLDAYINLGNV-LKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 697 -~~~a~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
....+...+.. +.-.++.+.|..++.++.+..+.+..+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~ 479 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYL 479 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHH
Confidence 13334444443 34556777888888888887766544433
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.53 Score=53.75 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=114.7
Q ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 56 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 56 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
+..+.|.++.++. +.+..|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-++++..
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4444444444432 34667888888888888888888888664 5666777777777888888888888777
Q ss_pred HHhcCCChhhHHHHHHHHHHHcCChHHHHHHH-----HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 136 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
+.+.-.+ +.+-..|...|.+.++..+-.+.+ ......|+-....|.|+.|.-+|.
T Consensus 1159 aRkk~~E-~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~------------------- 1218 (1666)
T KOG0985|consen 1159 ARKKVRE-PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS------------------- 1218 (1666)
T ss_pred HHHhhcC-ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH-------------------
Confidence 7654221 223334445555666666555544 123344555555566665555553
Q ss_pred CCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------------------------C
Q psy17306 211 GRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------------------P 265 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------p 265 (904)
+..-|..++..+..+|+|..|...-++|-... -
T Consensus 1219 ----------------------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1219 ----------------------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred ----------------------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 23344555666666666666666555542210 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 266 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
-+++-+-.+...|...|-+++-+..++.++.+...+
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 112334455666677777777777777776655544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0049 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
..++..++..+...|++++|+..+++++..+|.+..++..+-.+|...|+..+|+..|++....
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999999999999999888553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0046 Score=67.81 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..+.+.|.+++....+..|+.+-.++..|+++...|+.++|++.|++++..... ....++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344556666666666666666666666666666666666666666666542221 2335566666666666666666
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHH
Q psy17306 97 ENYRHAVRLKPDFI-DGYINLAAALVAAGDM-------EQAVQAYVTAL 137 (904)
Q Consensus 97 ~~~~~al~~~p~~~-~~~~~la~~~~~~g~~-------~~A~~~~~~al 137 (904)
.+|.+..+.+.-.. ...+..|.|+...|+. ++|.+.+.++-
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66666666543322 2334455566666666 55555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=64.55 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=91.1
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAA 628 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~ 628 (904)
....+.|...+.. .....|+.+-.++..|+++...|+.++|++.|++++...... .-.++.+|++
T Consensus 246 ~~~~~~a~~lL~~-----------~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 246 DVPLEEAEELLEE-----------MLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CCCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 4556777777777 889999999999999999999999999999999998644332 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHh
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFNAQGEI-------WLAIHHFEKAVS 692 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~ 692 (904)
+..+++|++|..+|....+ .+.- .+...+..|.|+...|+. ++|.+.|.++-.
T Consensus 315 ~~~~~~w~~A~~~f~~L~~-----------~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLK-----------ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999996655443 3222 344566778888899988 555555555533
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.02 Score=59.13 Aligned_cols=144 Identities=21% Similarity=0.150 Sum_probs=98.4
Q ss_pred hhCchhHhh---cCChhHHHHHHHHHhhhhhhHHHHHHHh-CCchHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q psy17306 544 NVEPDLTRE---GGSIPITLTFECRKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKE---------RGQLQEALENYRH 610 (904)
Q Consensus 544 ~~l~~~~~~---~~~~~~A~~~~~~~l~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~ 610 (904)
...|.++.+ .|+.++|+..+.. ++.. .+.+++++..+|.+|.. ....++|+..|.+
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~-----------~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k 251 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLP-----------VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK 251 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHH-----------HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 556666666 8999999999887 4443 55778999999999843 2247899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL-QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 611 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
+.+++|+ ...-.|++.++...|.-.+.....++.. ..+.-...+.....-.+.+.+-.++.+..-.|++++|+.++++
T Consensus 252 gFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~ 330 (374)
T PF13281_consen 252 GFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEK 330 (374)
T ss_pred HHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999965 4566778888888876444333222222 1110011122222334456667788888889999999999999
Q ss_pred HHhcCcCcHH
Q psy17306 690 AVSLDPNFLD 699 (904)
Q Consensus 690 al~~~p~~~~ 699 (904)
++.+.|..-.
T Consensus 331 ~~~l~~~~W~ 340 (374)
T PF13281_consen 331 AFKLKPPAWE 340 (374)
T ss_pred HhhcCCcchh
Confidence 9998776543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0052 Score=55.77 Aligned_cols=104 Identities=22% Similarity=0.218 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETN---NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
....+.+.+|..+...|++++|+..++.++....+ .+-+-.+++.+....|++++|+..++.....+ -.+......
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elr 165 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHh
Confidence 44567889999999999999999999999865443 24567789999999999999999998654321 134456789
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
|.++...|+-++|+..|++++..+++.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999999999999975543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0067 Score=55.11 Aligned_cols=117 Identities=23% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHH-HHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK-SAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
..+...|......|+...++..+.+++.......-.-..- ..|-. ....++. ....+...++..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------~~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------LYLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3456677778888999999999999987654321100000 11111 1112221 12346677788888
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
..|++++|+..+++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00058 Score=43.57 Aligned_cols=32 Identities=38% Similarity=0.633 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999999999999999988884
|
... |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00069 Score=66.63 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=62.3
Q ss_pred HHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130 (904)
Q Consensus 51 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 130 (904)
-.+..|.+++|++.|..++.++|..+..+..++.++.++++...|+..+..++.++|+....+-..|.....+|+|++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34455667777777777777777777777777777777777777777777777777776666666666666677777777
Q ss_pred HHHHHHHhcCC
Q psy17306 131 QAYVTALQYNP 141 (904)
Q Consensus 131 ~~~~~al~~~p 141 (904)
..+..+.+++-
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 77777766643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.12 Score=55.45 Aligned_cols=169 Identities=22% Similarity=0.243 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHH
Q psy17306 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD----LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185 (904)
Q Consensus 110 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~ 185 (904)
...+...+.+..+.|.++.|...+.++...++. .+.+.+..+.++...|+..+|+..+.....-
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~------------ 213 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC------------ 213 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 456677777777777777777777777665421 3456666677777777777776665111110
Q ss_pred HHHHHhhcCCCcchhhHHHHH-HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh------CCHHHHHHHHH
Q psy17306 186 AKNLHTENIKPVTMKVQNAIV-CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER------GQLQEALENYR 258 (904)
Q Consensus 186 A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~ 258 (904)
.+................ ......... ..........+.++..+|...... +..++++..|.
T Consensus 214 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 214 ---RLSKNIDSISNAELKSGLLESLEVISST--------NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred ---HhhhccccccHHHHhhcccccccccccc--------chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 000000000000000000 000000000 000111223367788888888888 89999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCc
Q psy17306 259 HAVRLKPDFIDGYINLAAALVAAGD-----------------MEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~ 301 (904)
++++.+|....+|+.+|..+...=+ ...|+..|-+++...+..
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 9999999999999999888764421 134788888888888875
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.91 Score=51.62 Aligned_cols=173 Identities=13% Similarity=0.001 Sum_probs=97.1
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh----CCC
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--LQEALENYRHAVRL----KPD 617 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~----~p~ 617 (904)
..+|.+..-.|++.+|..+.+...+.+.. .+..+-...+....+.++..+|+ +.+....|...-.. .|-
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~-----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQ-----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 55666777788888888888873333221 11112234556667888888884 33333444333222 344
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhc--C
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV-AWSNLGCVFNAQGEIWLAIHHFEKAVSL--D 694 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 694 (904)
+.......+.++...-+++.+.......++.. ......|.... +++.|+.++...|+.++|.........+ .
T Consensus 576 ~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~-----~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 576 HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG-----SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHhhhcchhh-----hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 33333333333333333666666444444321 11122333333 3358999999999999999999988777 2
Q ss_pred cC---cHHHHHH--HHHHHHHhcchhHHHHHHHHhhc
Q psy17306 695 PN---FLDAYIN--LGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 695 p~---~~~a~~~--la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
+. +..+... .......+|+..+|.....+...
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 21 1112222 22234678899999988888543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.58 Score=48.45 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 64 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
-++.-++.+|++...|+.+..-+..+|.+++-.+.|++...-.|-.+.+|...-..-...+++..-...|-+++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 4555567788888888888888888888888888888888877877777766655555566777777777777654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.26 Score=52.68 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=103.0
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh-h---
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP----DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS-C--- 652 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~--- 652 (904)
.......|...+.+....|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..++.... .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445678899999999999999999999999988652 24678888899999999999999988888772111 0
Q ss_pred -----HHH--------------hhhcCcchHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 653 -----YLK--------------AIETRPDFAVAWSNLGCVFNAQ------GEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 653 -----~~~--------------~l~~~p~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
+.. ........+.++..+|...... +..++++..|.++++++|+...+++.+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 000 0011123467888888888888 899999999999999999999999999998
Q ss_pred HHHh
Q psy17306 708 LKEA 711 (904)
Q Consensus 708 ~~~~ 711 (904)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 8654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.79 Score=51.89 Aligned_cols=174 Identities=22% Similarity=0.179 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q psy17306 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER-----GQLQEALENYRHAVRL-----KPDFIDGYINLAAALVAAG--- 124 (904)
Q Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 124 (904)
...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888877654 4577778888887654 6889999999988771 1124557788888888743
Q ss_pred --CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC---ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 125 --DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG---RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 125 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
++..|+.+|.++-... ++.+.+.+|.++.... +...|..+| .
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy-----------------------~-------- 352 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYY-----------------------S-------- 352 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHH-----------------------H--------
Confidence 6778888888887764 4566777777776544 334455444 1
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLA 275 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 275 (904)
.+.. -....+.+.+|.+|.. .-+...|..++.++.+.+ ++.+...++
T Consensus 353 -------------------------~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~ 403 (552)
T KOG1550|consen 353 -------------------------LAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLG 403 (552)
T ss_pred -------------------------HHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHH
Confidence 2222 2235666777776653 246778888888888776 445455555
Q ss_pred HHHHHc-CCHHHHHHHHHHHH
Q psy17306 276 AALVAA-GDMEQAVQAYVTAL 295 (904)
Q Consensus 276 ~~~~~~-g~~~~A~~~~~~al 295 (904)
..+..- +.+..+.-.+....
T Consensus 404 ~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 404 AFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHccccccHHHHHHHHHH
Confidence 544432 56655555544443
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=1.3 Score=55.85 Aligned_cols=145 Identities=17% Similarity=0.160 Sum_probs=104.0
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
....+.|...|++....|+++.|....-.|.+.. -+.+....|..+...|+-..|+..+++.++.+-..+..-.+..|
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3457899999999999999999999999988876 46899999999999999999999999998654221111101112
Q ss_pred ch------HHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------HhcchhH---HH
Q psy17306 662 DF------AVAWSNLGCVFNAQGEI--WLAIHHFEKAVSLDPNFLDAYINLGNVLK------------EARIFDR---AN 718 (904)
Q Consensus 662 ~~------~~a~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~------------~~g~~~~---A~ 718 (904)
.. ..+...++......|++ ..-+.+|..+.++.|.....++.+|..|. +.|++.. |+
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~ 1824 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAI 1824 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHH
Confidence 11 23455566666666664 45678999999999988888888885552 3455554 55
Q ss_pred HHHHHhhccc
Q psy17306 719 TLFYVSSYFM 728 (904)
Q Consensus 719 ~~~~~a~~~~ 728 (904)
-.|-+++..+
T Consensus 1825 ~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1825 YFFGRALYYG 1834 (2382)
T ss_pred HHHHHHHHhc
Confidence 5555665433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=41.16 Aligned_cols=32 Identities=50% Similarity=0.915 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888774
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.78 E-value=1.6 Score=50.43 Aligned_cols=288 Identities=16% Similarity=0.038 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---c-
Q psy17306 7 LGIGLLELAHREY-QAGDYESAERHCMQLWRQET--NNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---L- 75 (904)
Q Consensus 7 ~~~~l~~~a~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~- 75 (904)
.+...+.+|.+++ ...+++.|..++++++.... +-. .+.+.++.++.+.+... |...+++.++...+ .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4677889999987 78899999999999976553 322 34556788888888777 99999998886433 2
Q ss_pred HHHHHHH--HHHHHHhCcHHHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Q psy17306 76 AEAYSNL--GNVYKERGQLQEALENYRHAVRLK--PDFID----GYINLAAALVAAGDMEQAVQAYVTALQY------NP 141 (904)
Q Consensus 76 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~------~p 141 (904)
....+.+ ...+...+++..|+..++...... +.++. +....+.++...+..+++++..+++... +|
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 2222222 223333479999999999988765 34433 2344456666778788888888877432 11
Q ss_pred ----ChhhHHHHHHHH--HHHcCChHHHHHHHHHHHhhHHHHHHcCC-----HHHHHHHHh-----------hcCCCcch
Q psy17306 142 ----DLYCVRSDLGNL--LKALGRLDEAKDLYCVRSDLGNLLKALGR-----LDEAKNLHT-----------ENIKPVTM 199 (904)
Q Consensus 142 ----~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~-----------~~~~~~~~ 199 (904)
....++..+-.+ ....|++..+...++.....-........ .+-.+.+-. -.+...+.
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~ 296 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPK 296 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCH
Confidence 123344444433 34567776777666333322222222110 000000000 00000011
Q ss_pred hhHHHHH------Hhhc-CCCcch----HHHhhHHHHHh-h--cCch----------------hHHHHHHHHHHHHHhCC
Q psy17306 200 KVQNAIV------CNYG-GRKPTT----LESAHFSTLAI-K--QNPL----------------LAEAYSNLGNVYKERGQ 249 (904)
Q Consensus 200 ~~~~~~~------~~~~-~~~~~~----~~a~~~~~~~~-~--~~~~----------------~~~~~~~lg~~~~~~g~ 249 (904)
.....+. .... +..+.. .+++...++.. . ..+. ........+.+.+-.++
T Consensus 297 ~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 297 EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 1111111 1111 111111 12222223332 0 0000 12344556777778899
Q ss_pred HHHHHHHHHHHHhhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 250 LQEALENYRHAVRLK---PD------FIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 250 ~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
+..|......+.... |. .+..++..|..+...|+.+.|...|.+..
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 999998888777652 22 36678889999999999999999998544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.95 Score=47.21 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 682 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
+-+.+-++.+-.+.+++.++...+.--+...+|.+|++++++.-..+...+.+...+..|..
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (831)
T PRK15180 760 EHLDYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCIT 821 (831)
T ss_pred hhHhhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Confidence 34555667777788888888887888888999999999999988877655666666666664
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.11 Score=42.79 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=76.8
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 586 EAYSNLGNV--YKERGQLQEALENYRHAVRLKPD------------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 586 ~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+|..|+.. ...-|-|++|...++++.+.... +.-++..|+..+..+|+|++++..-+.+|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 445555444 34568899999999999987422 234677889999999999999999888888
Q ss_pred hHHHhhhcCcchHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 652 CYLKAIETRPDFAVAW----SNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.|.+--+++.+....| ++.|.++..+|+.++|+..|+.+-+.
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7777778888776554 57788888899999999999888664
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.17 Score=52.64 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH---cCChHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA---LGRLDEAKDLYC 168 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~ 168 (904)
.+.-+..+++|++.+|++...+..+-.+.....+.++..+-+++++..+|++...|..+-..... .-.++.....|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y- 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY- 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH-
Confidence 45667788888888888888888888888888888888888999998888888777766555443 22344444444
Q ss_pred HHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC
Q psy17306 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248 (904)
Q Consensus 169 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 248 (904)
.+++..+........ ... ............++..+.......|
T Consensus 126 ---------------~~~l~~L~~~~~~~~------------~~~----------~~~~~~e~~~l~v~~r~~~fl~~aG 168 (321)
T PF08424_consen 126 ---------------EKCLRALSRRRSGRM------------TSH----------PDLPELEEFMLYVFLRLCRFLRQAG 168 (321)
T ss_pred ---------------HHHHHHHHHhhcccc------------ccc----------cchhhHHHHHHHHHHHHHHHHHHCC
Confidence 233322221111000 000 0000111122455666777778888
Q ss_pred CHHHHHHHHHHHHhhC
Q psy17306 249 QLQEALENYRHAVRLK 264 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~ 264 (904)
..+.|+..++..++.+
T Consensus 169 ~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 169 YTERAVALWQALLEFN 184 (321)
T ss_pred chHHHHHHHHHHHHHH
Confidence 8888888888888875
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.71 Score=47.06 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=91.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhC----CCC----HHHHHHHHHHHHhhc-CHHHHHHHHHHHHhc----Cc------c----
Q psy17306 18 EYQAGDYESAERHCMQLWRQE----TNN----TGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQ----NP------L---- 74 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p------~---- 74 (904)
.+.+|+++.|..++.++-... |+. ...++..|...+..+ +++.|...++++.+. .+ +
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999885533 332 356777888888888 999999999999876 21 1
Q ss_pred cHHHHHHHHHHHHHhCcHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy17306 75 LAEAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 141 (904)
...++..++.+|...+.++ +|....+.+-.-.|+.+..+...-.++...++.+.+.+.+.+++..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 2346778889998887765 455555555555687777775555666668899999999999887643
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.003 Score=40.72 Aligned_cols=28 Identities=39% Similarity=0.621 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+|.+||.+|..+|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777777888888888888776554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.038 Score=49.17 Aligned_cols=86 Identities=17% Similarity=0.094 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.-.+++.....-...++.+++..++..+-...|..++.-..-|.++...|+|.+|+.+++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556666666666777777777776666667777777777777777777777777777776666666666666667776
Q ss_pred HHhCcH
Q psy17306 87 KERGQL 92 (904)
Q Consensus 87 ~~~g~~ 92 (904)
..+|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666653
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.55 E-value=2.1 Score=48.89 Aligned_cols=243 Identities=20% Similarity=0.138 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC--
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-- 109 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 109 (904)
+|......+.......++++|..+..++...-+. .+...-..|.+....|+++.|+...+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455556667777777888887777766553221 23445566777777788888888888887765543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CChh--hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 110 ---IDGYINLAAALVAAGDMEQAVQAYVTALQYN----PDLY--CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 110 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..++..+|.+..-.|++++|..+...+.+.. .-.. .+....+.++..+|+...+...- ...+.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~--~~~~~------ 565 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEK--AFNLI------ 565 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHH------
Confidence 3456777777777888888887777776652 2222 22334466666666322222211 00000
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc--CchhHH-HHHHHHHHHHHhCCHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ--NPLLAE-AYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
......++............+...+........++...+.-.... .|.... ....++.+.+..|++++|...+
T Consensus 566 ----~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 566 ----REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred ----HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 000000000000000011111111111000111111111111111 222222 3358999999999999999999
Q ss_pred HHHHhhCCCC-H----H--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 258 RHAVRLKPDF-I----D--GYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 258 ~~al~~~p~~-~----~--~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
......-.+. + . +..-.......+|+...|.....+..
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 8877653221 1 1 12222333446788888888777743
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.035 Score=45.64 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+|..++..|++-+|+++.+..+...+++. ..+..-|.++.... ...+..+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence 57788899999999999999988877765 34444555544332 22211112222222
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.|+++|.++..+.|..+..++.+|.-+-....|++++.-.++++.+
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666666655555666666666666554
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.053 Score=57.96 Aligned_cols=129 Identities=23% Similarity=0.129 Sum_probs=100.7
Q ss_pred HHHhCCchHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 577 AIKQNPLLAEAYSN--LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 577 al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
.+..+|.++..+.. +...+...+....+.-....++..+|++..+..+||......|....+...+. .
T Consensus 57 ~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~----------~ 126 (620)
T COG3914 57 GIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS----------E 126 (620)
T ss_pred cCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH----------H
Confidence 45567777765433 47777888899899999999999999999999999999988887776666332 2
Q ss_pred HhhhcCcchHHHHHHH------HHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh
Q psy17306 655 KAIETRPDFAVAWSNL------GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD 715 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 715 (904)
.+....|++......+ |.....+|+..++....+++..+.|.++.+...+.....++-.|.
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 2445566666555555 899999999999999999999999999888887777766555543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.3 Score=45.71 Aligned_cols=134 Identities=24% Similarity=0.195 Sum_probs=90.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC----RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE---- 88 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 88 (904)
.....+++..|...+..+-. -.++.....++.+|... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 33456678888888877754 22336777777777643 46778888888544 34567788888888876
Q ss_pred hCcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDF-IDGYINLAAALVAAG-------DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
..+..+|..+|.++....-.. ..+...+|.+|..-. +...|+..|.++-... ++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 458888999998888875433 344777777776541 2336777777776654 55666777766644
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0043 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777777775
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.16 Score=52.89 Aligned_cols=119 Identities=9% Similarity=-0.008 Sum_probs=80.3
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchh--HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDL--TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 595 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~ 595 (904)
.+.+.++.+|.+.+.|-.+...-......+.. -....-.+..+.++ ++|++.+|++...+..+-.+.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsil-----------erAL~~np~~~~L~l~~l~~~ 75 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSIL-----------ERALKHNPDSERLLLGYLEEG 75 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-----------HHHHHhCCCCHHHHHHHHHHH
Confidence 34566778888888884333322222221111 01111123333444 449999999999999888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA---AGDMEQAVQAYVTALQ 647 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~---~g~~~~A~~~~~~al~ 647 (904)
....+.++..+.+++++..+|+++..|...-..... .-.++.....|.+++.
T Consensus 76 ~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 76 EKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 888899999999999999999998888765554443 2357888888887776
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.25 Score=51.12 Aligned_cols=149 Identities=21% Similarity=0.133 Sum_probs=110.3
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCc-HHHHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDF-IDGYINLAA 627 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~ 627 (904)
..+..+|+.+|+. +. ....+.+.+.+|.+|.. ..+..+|...|+++.+..-.. ..+.+.+|.
T Consensus 90 ~~~~~~A~~~~~~-----------~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~ 156 (292)
T COG0790 90 SRDKTKAADWYRC-----------AA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGL 156 (292)
T ss_pred cccHHHHHHHHHH-----------Hh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3457778888876 33 34567888999999987 448999999999999985443 345888898
Q ss_pred HHHHcC-----C--HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcC
Q psy17306 628 ALVAAG-----D--MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 628 ~~~~~g-----~--~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 696 (904)
+|..-+ . ...|...|.++ .... ++.+.+.+|.+|.. ..++.+|..+|.+|.+...
T Consensus 157 ~~~~g~~~~~~~~~~~~A~~~~~~a-----------a~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~- 222 (292)
T COG0790 157 AYLSGLQALAVAYDDKKALYLYRKA-----------AELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD- 222 (292)
T ss_pred HHHcChhhhcccHHHHhHHHHHHHH-----------HHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-
Confidence 887752 2 22566644443 3322 67889999988865 3489999999999999976
Q ss_pred cHHHHHHHHHHHHHhc---------------chhHHHHHHHHhhcccCC
Q psy17306 697 FLDAYINLGNVLKEAR---------------IFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~~~ 730 (904)
..+.+.++ ++...| +...|...+.++......
T Consensus 223 -~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 223 -GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred -HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 88999999 666665 777788888777766543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.054 Score=52.08 Aligned_cols=94 Identities=24% Similarity=0.213 Sum_probs=72.1
Q ss_pred HcCCHHHHHHHHHHHHhh----C-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc------ch
Q psy17306 597 ERGQLQEALENYRHAVRL----K-PD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP------DF 663 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~----~-p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p------~~ 663 (904)
....+++|++.|.-|+-. . +. -+..+..+|++|..+|+.+....++++|++ .|.++++... +.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----FYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----HHHHHHHhCcCCCCCchH
Confidence 345677888888777643 1 21 256788999999999998888888888888 6666665432 33
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
....+.+|.++.+.|++++|+.+|.+++...
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 5678889999999999999999999998873
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.7 Score=45.49 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=109.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
...+..|+.-.|-.-...+++..|..|......+.+....|+|+.|...+..+-..-.....+...+-.....+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34578899999999999999999999999999999999999999999988776655444455666677778899999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.....-.+...-.+++.....+.....+|-++++...|++.+.++|...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999988887777777776667777788999999999999999987643
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.6 Score=45.31 Aligned_cols=134 Identities=15% Similarity=0.018 Sum_probs=74.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~ 674 (904)
.+..-.+.|...|-++-+..-....++..-|.+ +...|++.-|-. .|.-.+...|+.+..-...-..+
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~-----------ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYN-----------IFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHH-----------HHHHHHHhCCCchHHHHHHHHHH
Confidence 333445666666666655442333344433333 445667777777 33333444555555555555556
Q ss_pred HhCCCHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHH
Q psy17306 675 NAQGEIWLAIHHFEKAVSLDPN--FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILER 740 (904)
Q Consensus 675 ~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 740 (904)
...++-+.|...|++++..-.. -..+|..+-..-..-|+...+...=++..+..|...-+.....+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 6677777777777776655222 24455555555566677777666666666666655444444333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0068 Score=38.17 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57778888888888888888888888887763
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.091 Score=43.28 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=60.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHcC----CHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFID---GYINLAAALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++.-+...|++-+|++..+..+..++++.. .+..-|.++..+. +.+-=..++.-+++ ++.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve----~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVE----CFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHH----HHHHHhccChhH
Confidence 456778899999999999999999888764 4455566665432 22222223333333 555555555555
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+..++.+|.-+....-|++++.-.+++|.+
T Consensus 78 A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 78 AHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 555555555544444555555555555554
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=55.44 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=55.8
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 49 SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 49 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
+.-....|+.++|..+|+.++.++|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 33455678888888888888888888888888888888888888888888888888888888877776654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.01 Score=38.27 Aligned_cols=28 Identities=39% Similarity=0.828 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
+|.+||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775443
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.25 Score=47.23 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=130.5
Q ss_pred HHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME-QA 129 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 129 (904)
+.+...-..|+.+.+.++.++|.+-.+|..+-.++..++ +..+-+.++..+++-+|.+-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344455678888899999999999999988888877664 6778889999999999999999999999999999988 88
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 130 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
++..+.++..+.++..+|...-.+....+.++.-+.+.
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~------------------------------------------ 170 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA------------------------------------------ 170 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH------------------------------------------
Confidence 89999999999999999988888888888887766655
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE------RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
...++.+-.+-.+|...-.+... .-..+.-+.+..+.+...|++..+|..|.-++..
T Consensus 171 --------------~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 171 --------------DELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred --------------HHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 23333333333333322111111 1123445677788899999999999998887775
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.089 Score=50.62 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHH-------HHHHHHHHHhcC--cC----c
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWL-------AIHHFEKAVSLD--PN----F 697 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~-------A~~~~~~al~~~--p~----~ 697 (904)
...+++|++.|.-|+- ........| ..+..+..+||+|..+|+.+. |+..|+++++.. |. .
T Consensus 90 ~Rt~~~ai~~YkLAll-----~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 90 ERTLEEAIESYKLALL-----CAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCHHHHHHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 3467788887777763 222222222 447788999999999999554 555555555542 22 3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 698 LDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 698 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..+.+-+|.+..+.|++++|..+|.+++.....
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 678899999999999999999999999987643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=46.21 Aligned_cols=85 Identities=24% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..+..+..+-...++.+.+..++.-+--+.|+.+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45566666677777888888888877777888888888888888888888888888888777777777777777888877
Q ss_pred cCCHH
Q psy17306 123 AGDME 127 (904)
Q Consensus 123 ~g~~~ 127 (904)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 77754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.45 Score=49.40 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=91.9
Q ss_pred hhhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHH--HHHHHHhc--------
Q psy17306 3 DIAQLGIGLLELAHREYQAGD-YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH--FSTLAIKQ-------- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~-------- 71 (904)
|..++..-++.-|..+++.|. -++|+.+++.+++..|.+.+..... ..+-...|.+|+. .+.+.+.+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 345677788899999999998 7889999999999988876543322 2222333444432 22222221
Q ss_pred -Cc---ccHHHHHHHH--HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 72 -NP---LLAEAYSNLG--NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 72 -~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
.| .+.+.-..++ ..++.+|+|.++.-+-.-..++.| ++.++..+|.|.....+|++|..++...
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 2333333443 456788999999998888888999 7899999999999999999999988754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.041 Score=38.78 Aligned_cols=43 Identities=14% Similarity=-0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
+.++.+|..+.++|+|++|..+.+.+|+++|+|..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567888888899999999999999999999888776554443
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.045 Score=53.15 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=59.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 670 LGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 670 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
.+.-..+.|+.++|...|+.|+.++|.+++++..+|......++.-+|-.+|-+++.+.|.++....+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444567899999999999999999999999999999999999999999999999999988766554443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1 Score=40.40 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHH
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNN--TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGN 84 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~ 84 (904)
-|..|..+.+.+..++|+.-|..+-+..-.+ .-+.+..|.+....|+...|+..|..+-...|. ...+...-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 4566777788899999999998876654443 346777888999999999999999988765432 1335566677
Q ss_pred HHHHhCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 85 VYKERGQLQEALENYRHAVR-LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
++...|-|++-..-.+..-. .+|-...+.-.||..-++.|++.+|.+.|.+... +...+..-.+.+.+.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 78888999887766655322 2455567888899999999999999999998876 444444444444443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.051 Score=43.78 Aligned_cols=74 Identities=18% Similarity=0.075 Sum_probs=58.0
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+|+. ..+...+-.++...|.-+.-..-|++-+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 6677888999999999999999999999999999999999998775 7778888888888887666666665544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.13 Score=44.89 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
...+++.........++++++..++..+--..|+.++.-..-|.++...|+|.+|+.+++...+..+..+.+.-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34456666666666777777777777666667777777777777777777777777777777666666666666666666
Q ss_pred HHhCc
Q psy17306 87 KERGQ 91 (904)
Q Consensus 87 ~~~g~ 91 (904)
..+|+
T Consensus 89 ~al~D 93 (153)
T TIGR02561 89 NAKGD 93 (153)
T ss_pred HhcCC
Confidence 66665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=3.4 Score=43.85 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHh
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVR 104 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 104 (904)
.-..+|++++...+.++..|........+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678888888888888888887777777778888899999999999999999888887777765 8888999999999
Q ss_pred cCCCCHHHHHHH
Q psy17306 105 LKPDFIDGYINL 116 (904)
Q Consensus 105 ~~p~~~~~~~~l 116 (904)
.+|+++..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999988776543
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=4.2 Score=44.38 Aligned_cols=273 Identities=10% Similarity=0.010 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhCcHHHHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV-YKERGQLQEALENYRHAV 103 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 103 (904)
+.+...|...|...|.....|...|..-.+.|..+.+.++|++.+.--|.....|...-.. -...|+.+.-...|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 5556677777888898888888899999999999999999999998888777776654443 335577778888888888
Q ss_pred hcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH------cCChHHHHHHHHHHHhhH
Q psy17306 104 RLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA------LGRLDEAKDLYCVRSDLG 174 (904)
Q Consensus 104 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~l~ 174 (904)
.....+ ...|-..-..-..++++..-...|++.+++--....-++..-.=+.. .-..++....-.....-
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~- 220 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER- 220 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh-
Confidence 765443 23444444445667788888888888877522221111111000000 11111111111000000
Q ss_pred HHHHHcCCHHHHHHHHhhcCC-Ccchhh--H------HHHHHhhcCCCcchHHHhhHHHHHh--------hcCchhHHHH
Q psy17306 175 NLLKALGRLDEAKNLHTENIK-PVTMKV--Q------NAIVCNYGGRKPTTLESAHFSTLAI--------KQNPLLAEAY 237 (904)
Q Consensus 175 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~------~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~ 237 (904)
......+...+-....-..+. +..... . ....................++..+ ..++.....|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 000000011111111111000 000000 0 0000000011111111111112221 2334455677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..........|+++.....|++++--.......|...+......|+.+-|-..+..+.+..
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 7777778888999999999999988877888889988888888888777776666666544
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.39 Score=39.74 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=57.4
Q ss_pred hhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q psy17306 5 AQLGIGLLE--LAHREYQAGDYESAERHCMQLWRQETN------------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70 (904)
Q Consensus 5 ~~~~~~l~~--~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 70 (904)
...+.+++. .|...+..|-|++|...+.+++..... ++-.+..|+..+...|+|++++...++++.
T Consensus 4 keVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345566554 455667889999999999998765322 233555666667777777766665555543
Q ss_pred -------cCcccH----HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 71 -------QNPLLA----EAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 71 -------~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
++.+.. .+.+..|..+..+|+.++|+..|+.+-+
T Consensus 84 YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 222222 2334555555556666666666655543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=3 Score=42.50 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=36.9
Q ss_pred HHhCcHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q psy17306 87 KERGQLQEALENYRHAVRLK----PDF----IDGYINLAAALVAAG-DMEQAVQAYVTALQY 139 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 139 (904)
..+|+++.|..++.++-... |+. ...+++.|......+ ++++|+.+++++.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777777775543 222 235667777777777 888888888888776
|
It is also involved in sporulation []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.34 Score=51.08 Aligned_cols=165 Identities=18% Similarity=0.079 Sum_probs=111.6
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHH-----HH--HHHHHHcCChHHHHHHHHHHHhhHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRS-----DL--GNLLKALGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~l--a~~~~~~~~~~~A~~~~~~~~~l~~ 175 (904)
+..+|-..+++..++.++..+|+...|.+.+++|+-.......... .. |.+...- ...+-...|........
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~-~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY-RRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC-ccccchHHHHHHHHHHH
Confidence 4568999999999999999999999999999998743211111111 11 1111111 12233445556666677
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch-hHHHHH-HHHHHHHHhCCHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-LAEAYS-NLGNVYKERGQLQEA 253 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~lg~~~~~~g~~~~A 253 (904)
...+.|-+..|+++.+ -.+..+|. ++.... .+-....+.++|+--
T Consensus 112 ~L~~RG~~rTAlE~~K---------------------------------lLlsLdp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCK---------------------------------LLLSLDPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred HHHhcCcHHHHHHHHH---------------------------------HHHhcCCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 7778888888888775 67788887 665444 444445677888877
Q ss_pred HHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCc
Q psy17306 254 LENYRHAVRLKP-----DFIDGYINLAAALVAAGDM---------------EQAVQAYVTALQYNPLL 301 (904)
Q Consensus 254 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 301 (904)
+..++....... ..|..-+..+.++...++. +.|...+.+|+...|..
T Consensus 159 i~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 159 IDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 777776555211 1345677888888888888 89999999999999976
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=95.58 E-value=4.2 Score=43.79 Aligned_cols=241 Identities=11% Similarity=-0.006 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYV 134 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 134 (904)
+...+.+.......|+++......+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555567889899999999999999998888999988877 332 2356788999999999999999999
Q ss_pred HHHhcCCChhhHHHHHH-HHHH--------HcCChHHHHHHHHHHHhhHHH-----HHHcCCHHHHHHHHhhcC-CCc--
Q psy17306 135 TALQYNPDLYCVRSDLG-NLLK--------ALGRLDEAKDLYCVRSDLGNL-----LKALGRLDEAKNLHTENI-KPV-- 197 (904)
Q Consensus 135 ~al~~~p~~~~~~~~la-~~~~--------~~~~~~~A~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~-~~~-- 197 (904)
.....+.-+.-.+..++ -++. ..|+-+.|...++....+-.. -....-..+|.+.-...- .+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~ 407 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASIL 407 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccccc
Confidence 98877655544555554 2221 123444443333211111100 000111122222222210 000
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHH---hhc-Cchh-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC------C-
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLA---IKQ-NPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLK------P- 265 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p- 265 (904)
...+..-+...+.+-..-........... -.. ++++ .-.+..+|.++..+|+...|..+|...++.. +
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783|consen 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred ccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccc
Confidence 01111222222322221111111111111 111 3333 3345678999999999999999999888431 1
Q ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCc
Q psy17306 266 DFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 266 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 301 (904)
-.|.+++.+|..+..+|. ..++..++.+|-....+.
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 126799999999999999 999999999998877554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.2 Score=47.10 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------------C------------ccc---HHHHHHHHH
Q psy17306 34 LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--------------N------------PLL---AEAYSNLGN 84 (904)
Q Consensus 34 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~ 84 (904)
.++.+|-+.+++..++.++..+|+...|.+++++++-. + +.| -.+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999888642 1 111 235566677
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHHc
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPD-FIDG-YINLAAALVAAGDMEQAVQAYVTALQYNPD-----LYCVRSDLGNLLKAL 157 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 157 (904)
.+.+.|-+..|+++.+-.+.++|. ++-. ++.+-....+.++++--+..++........ -+...+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 778888889999998888888888 6544 444444455677777777777665442111 123444555555555
Q ss_pred CCh
Q psy17306 158 GRL 160 (904)
Q Consensus 158 ~~~ 160 (904)
++.
T Consensus 192 ~~~ 194 (360)
T PF04910_consen 192 EKE 194 (360)
T ss_pred cCc
Confidence 554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.019 Score=35.72 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.+++.+|.++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677788888888888888888888777764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.17 Score=40.87 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=17.8
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 65 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
+++.++.+|++..+.+.+|..+...|++++|++.+-.++..++
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3344444444444444444444444444444444444444443
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=12 Score=47.94 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 13 ELAHREYQAGDYESAERHCMQLWRQETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 13 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+|.+-++.|.|..|+-++++- ...+. ....++.+-.+|...+++|.-.-..... ..+|+ ....-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHHh
Confidence 5677778889999999998885 22221 1233444445788888887766655531 12232 2333445566
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 147 (904)
.|++..|..+|++++..+|+....+.+.-......|.+...+...+-.....++...-+
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~ 1520 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDEL 1520 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHH
Confidence 78888888888888888888777777776777777777777776665554444443333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=51.15 Aligned_cols=78 Identities=13% Similarity=0.013 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
..+.++-.+|...++++.|+.+.+..+.++|+++.-+...|.+|.++|.+..|..-++.-++..|++++...+.....
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999999999999888777654443
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=95.18 E-value=6.4 Score=43.47 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 89 (904)
.++|.+-..-|+|++|.+.|-.+-+. + ....++...|+|-...++++..-.- +..-..++..+|..+..+
T Consensus 738 ~q~aei~~~~g~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 738 QQRAEISAFYGEFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM 809 (1189)
T ss_pred HHhHhHhhhhcchhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH
Confidence 34455555567777777766544211 1 1123445556665555555432111 112345788888888888
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
..|++|.++|.+.-. .-++..|++...++++-... ...-|++...+-.+|..+...|.-++|.+.+
T Consensus 810 ~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 888888888876422 12334445554444432222 2223445555555555555555555555544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.12 Score=36.47 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKT 745 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 745 (904)
+.++.+|..+.++|+|++|..+.+..+...|++.........+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998888877777655
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.21 Score=49.75 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+.++-.+|.+.++++.|+. +.+..+...|+++.-+...|.+|.++|.+..|...++..++..|+++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~-----------~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALR-----------ASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 356788889999999999999 888888899999999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q psy17306 700 AYINLGNV 707 (904)
Q Consensus 700 a~~~la~~ 707 (904)
+-.-...+
T Consensus 251 a~~ik~ql 258 (269)
T PRK10941 251 SEMIRAQI 258 (269)
T ss_pred HHHHHHHH
Confidence 76544443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.042 Score=34.03 Aligned_cols=32 Identities=50% Similarity=0.785 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
.+++.+|.++...|+++.|+..|+++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777787778888888888877777664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.054 Score=36.27 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888888888888888888888876
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.38 Score=42.11 Aligned_cols=84 Identities=21% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 123 (904)
.+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..|+...+..+..+.+.-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444445555777777777777776777777777777777777777777777777777776666666666677777777
Q ss_pred CCHH
Q psy17306 124 GDME 127 (904)
Q Consensus 124 g~~~ 127 (904)
||.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.6 Score=39.46 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----CcccHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETN--------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----NPLLAEA 78 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 78 (904)
+.+|+.....+++++|+..|.+++..... ...+...++.+|...|++..--+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 78899999999999999999999876322 3457788999999999887554443332221 1222222
Q ss_pred HHHHHH-HHHHhCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCChhh
Q psy17306 79 YSNLGN-VYKERGQLQEALENYRHAVRLKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQY------NPDLYC 145 (904)
Q Consensus 79 ~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 145 (904)
...+-. .-.....++.-+......++...... ..-..++..+++.|.|.+|+......+.- .|+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222211 11223445555555555554422211 12345667788888888888877666532 233345
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy17306 146 VRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 146 ~~~~la~~~~~~~~~~~A~~~~ 167 (904)
.+..-..+|....+..++...+
T Consensus 167 vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHH
Confidence 6666667777777666666555
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.29 Score=57.90 Aligned_cols=175 Identities=19% Similarity=0.154 Sum_probs=129.1
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHH-HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFST-LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------- 614 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~-~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 614 (904)
...|......|.+.+|.+ ..+ +..++. .....+|..+..+..++.++...|++++|+..-.++.-+
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~----slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPE----SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhh----hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 344445555666666665 333 222222 244568999999999999999999999999998888765
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
.|+....+.+++...+..++...|...+.+++....=.+ .+.+|.-+....+++.++...++++.|+.+.+.|++..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~---ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS---GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc---CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 366677899999999999999999998888876532112 23678888888999999999999999999999999973
Q ss_pred c--------CcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 695 P--------NFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 695 p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
- .....+..+++++...|++..|+...+....
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2 2345666777777777777777666655543
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.57 Score=48.06 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 80 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135 (904)
Q Consensus 80 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 135 (904)
-.+..||+.+++.+-|+....+.+.++|..+.-+...|.|+..+.+|.+|-+.+--
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666554433
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.8 Score=43.99 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=73.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHH-HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-- 620 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~-~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 620 (904)
..+|.+++..+.|.+-..++.+.-.....-- +.-........+.|..--..|-.+.+-.+-...|++++.+....|.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4577888888887776666655111000000 0000011112334555556777778878888899999988543322
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC
Q psy17306 621 ----GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678 (904)
Q Consensus 621 ----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g 678 (904)
+.-.=|..+.+.|++++|-..|=+|.+ .|..+-...-....-|.-||+.+.+.|
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFK----NYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFK----NYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHh----cccccCCcchhHHHHHHHHHHHHHHcC
Confidence 333446778888999999986666665 333322222222334566677776655
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.1 Score=48.29 Aligned_cols=139 Identities=19% Similarity=0.073 Sum_probs=106.5
Q ss_pred HcCCHHH-HHHHHHHHHhhCCCCHHHHHHH--HHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 20 QAGDYES-AERHCMQLWRQETNNTGVLLLL--SSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 20 ~~g~~~~-A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..+.... ++..+...+..+|.++..+... ...+...++...+...+...+..+|.++.+..++|......|....+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 3344333 6666666667788888775444 667778888889999999999999999999999999988888777777
Q ss_pred HHHHH-HHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 97 ENYRH-AVRLKPDFIDGYINL------AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 97 ~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
..+.. +....|++......+ +.....+|+..++....+++....|.++.....+.......-
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 66665 788888887665554 888888899999999999999999998766655555543333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.4 Score=37.17 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH-----HHHHHH
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR-----SDLGNL 153 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~la~~ 153 (904)
.-+.-+.+.+..++|+..|...-+..-.. .-+....|.+..+.|+...|+..|..+-...| .|.+. ..-+.+
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~l 141 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHH
Confidence 33444566788888888888876654332 34677788888899999999999988765543 23333 333334
Q ss_pred HHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 154 LKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
+...|.|++. ....+. -....+|..
T Consensus 142 LvD~gsy~dV-----------------------~srvep--------------------------------La~d~n~mR 166 (221)
T COG4649 142 LVDNGSYDDV-----------------------SSRVEP--------------------------------LAGDGNPMR 166 (221)
T ss_pred HhccccHHHH-----------------------HHHhhh--------------------------------ccCCCChhH
Confidence 4444444443 333321 233556667
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+.-.||..-++.|++..|.+.|.+... +...+....+.+.+..
T Consensus 167 ~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 167 HSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 77888899999999999999999999776 5455555555555443
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.21 Score=52.49 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER---GQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 46 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+++.++.++..
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e 457 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE 457 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence 33333344445556667777777777777666666666666654 345566666667777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCh
Q psy17306 123 AGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~ 143 (904)
++++.+|+.+...+....|.+
T Consensus 458 l~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 458 LTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhhHHHhhhhHHHHhhcCchh
Confidence 777777777777666666644
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=11 Score=41.91 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH----------HHHHHHHHHcCChHHHHHHHH---HHHhhHHH
Q psy17306 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR----------SDLGNLLKALGRLDEAKDLYC---VRSDLGNL 176 (904)
Q Consensus 110 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~~~~A~~~~~---~~~~l~~~ 176 (904)
+..|..+|......-.++-|...|-+.-.. |.- ..- ...+.+-.--|.+++|...|- ..-....+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAiel 769 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIEL 769 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHH
Confidence 667777777766666666666665554211 111 111 122333334466666666651 11112234
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 256 (904)
+.+.|++-...++++..-.. ..+.....++..+|..+.....|++|.++
T Consensus 770 r~klgDwfrV~qL~r~g~~d-------------------------------~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSD-------------------------------DDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCC-------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554421110 11222356778888888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 257 YRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (904)
|.+.-. .-++..+++...++++-
T Consensus 819 Y~~~~~--------~e~~~ecly~le~f~~L 841 (1189)
T KOG2041|consen 819 YSYCGD--------TENQIECLYRLELFGEL 841 (1189)
T ss_pred HHhccc--------hHhHHHHHHHHHhhhhH
Confidence 876422 23455666666666553
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.4 Score=37.70 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhh-cCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 619 IDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIE-TRPD-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
....+++++++....+.+ +.+. ++...++ -+|+ ..+..+.|+..+.+.|+|++|+.+.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~-----------iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIV-----------ILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHH-----------HHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456677777777665433 3444 3333332 2222 3456667777777777777777777777777
Q ss_pred CcCcHHHHH
Q psy17306 694 DPNFLDAYI 702 (904)
Q Consensus 694 ~p~~~~a~~ 702 (904)
.|+|..+..
T Consensus 101 e~~n~Qa~~ 109 (149)
T KOG3364|consen 101 EPNNRQALE 109 (149)
T ss_pred CCCcHHHHH
Confidence 777766653
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.085 Score=49.19 Aligned_cols=60 Identities=28% Similarity=0.522 Sum_probs=46.2
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.....++.+.|.+.|.+++.+-|.+...|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567777788888888888888888888888888888888888888888888877663
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.83 Score=42.63 Aligned_cols=99 Identities=14% Similarity=-0.001 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC--CCHH----H
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFID----G 112 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~ 112 (904)
-.++..+|..|.+.|+.+.|++.|.++...... ....++.+..+....+++.....+..++-..-. .+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 356777888888888888888888887665332 245667777777778888888888777765522 2221 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYN 140 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 140 (904)
...-|..++..++|..|-+.|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3445666777888888888887665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.73 Score=39.39 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHh-cCcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGE---IWLAIHHFEKAVS-LDPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~---~~~A~~~~~~al~-~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
....+++++++....+ ..+.+..++..++ -+|. .-+..+.|+..+.+.|+|++++.+.+..++..|++..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4678999999988765 5679999999997 5555 367889999999999999999999999999999988887776
Q ss_pred HHHHHHH
Q psy17306 739 ERCEAKT 745 (904)
Q Consensus 739 ~~~~~~~ 745 (904)
..++.++
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 6666544
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.21 Score=52.61 Aligned_cols=106 Identities=12% Similarity=-0.025 Sum_probs=75.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCHHHHHHHHHHHHhcCcccHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC---RKLDKSAHFSTLAIKQNPLLAEAYS 80 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~ 80 (904)
++...+-.+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.-...+++++|....+++
T Consensus 370 L~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred chHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 3445555566666666666777777788777777777777777777776654 4566677777777777777777888
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 81 NLGNVYKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 81 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
.|+.++..++++.+|+.+...+....|.+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 88888888888888887777766666644
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.95 Score=53.80 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------
Q psy17306 7 LGIGLLELAHREYQAGDYESAER------HCMQLW-RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-------- 71 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 71 (904)
.+.-.++.|......|.+.+|.+ .+.+.. ...|..+..+..++.++...|++++|+..-.++.-.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 45556778888888888888877 555332 357788899999999999999999999988887643
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD- 142 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 142 (904)
.|+....+..++...+..++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+..+-.
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788899999999999999999999998876 3555566788899999999999999999999885322
Q ss_pred -------hhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 143 -------LYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 143 -------~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
....+..++++....+++..|....
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 2334555566666666665555544
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.51 Score=51.07 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPL------LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
+-|.-.++..+|..+++.|...+..-|. .+.....++.||..+.+.+.|.++++.|-+.+|.++-.....-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3344444444555555555544443222 1223344445555555555555555555555555544444444444
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17306 121 VAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al 137 (904)
..-|.-++|+.+..+..
T Consensus 439 ~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 44455555555444443
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=93.79 E-value=11 Score=40.26 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q psy17306 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQ 138 (904)
Q Consensus 60 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 138 (904)
.-...|+.++...+.+...|........+.+.+.+--..|.+++..+|++++.|+..|.-.+..+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345788899998898999999999888888889999999999999999999999999988887776 9999999999999
Q ss_pred cCCChhhHHHHHHHH
Q psy17306 139 YNPDLYCVRSDLGNL 153 (904)
Q Consensus 139 ~~p~~~~~~~~la~~ 153 (904)
.+|+++..|...-++
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999887655444
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=93.62 E-value=9 Score=38.65 Aligned_cols=265 Identities=15% Similarity=0.058 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC--------HHHHHHHHHHHHhhcCHHHHHHHHHHHHh---cCcc--
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQ--ETNN--------TGVLLLLSSIHFQCRKLDKSAHFSTLAIK---QNPL-- 74 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~-- 74 (904)
..+..+.......+.++++.++..++.. .|.+ ......+|.++...|+.++-.......-. .-+.
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3477888888889999999999999873 2322 34677899999999998876555543322 1111
Q ss_pred cHHHHHHHHH-HHHHhCcHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC--
Q psy17306 75 LAEAYSNLGN-VYKERGQLQEALENYRHAVRLKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQY----NP-- 141 (904)
Q Consensus 75 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p-- 141 (904)
.+.....+-. +....+..+.-+..+..+++.....- ..-..+...|...++|.+|+......+.- +.
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111111 12222334445555555554322211 12345677888888888888877766542 22
Q ss_pred ChhhHHHHHHHHHHHcCChHHHHHHHHHHHh------------------hHHHHHHcCCHHHHHHHHhhcCCCcchhhHH
Q psy17306 142 DLYCVRSDLGNLLKALGRLDEAKDLYCVRSD------------------LGNLLKALGRLDEAKNLHTENIKPVTMKVQN 203 (904)
Q Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 203 (904)
.-.+++..-..+|....+..+|...+..... -|..+....+|..|..+|-++...+.
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~----- 240 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD----- 240 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc-----
Confidence 1245556666777777777777766622111 13334444555555555544332211
Q ss_pred HHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHH--HHHHHhhCCCCHHHHHHHHHHHHHc
Q psy17306 204 AIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN--YRHAVRLKPDFIDGYINLAAALVAA 281 (904)
Q Consensus 204 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~~~~~~~la~~~~~~ 281 (904)
.+..++.-..++..+-.+-...+..++--.. -..+++......++....+.++.+.
T Consensus 241 ----------------------s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 241 ----------------------SLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred ----------------------ccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 1111222233333444444455555554333 3445566666677888888777643
Q ss_pred --CCHHHHHHHHHHHHhhCCCc
Q psy17306 282 --GDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 282 --g~~~~A~~~~~~al~~~p~~ 301 (904)
.+|+.|+..|..-+..+|-.
T Consensus 299 SLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 299 SLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred cHHHHHHHHHHhHHHHhcChHH
Confidence 47788888887777766643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.16 Score=33.94 Aligned_cols=29 Identities=38% Similarity=0.647 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRL 614 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (904)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777776654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.12 Score=48.36 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=31.1
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
...++.+.|.+.+.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555543
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.58 Score=50.62 Aligned_cols=106 Identities=13% Similarity=-0.017 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+.+-|.-.++..+|..+++.|...+..-|.. ..+-..+....+++.||..+.+.++|+++++.|-+.+|.++-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D-----~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD-----NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch-----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 345666777788888999999777666533321 122334667889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
.....-.+...-|+-++|+.+..+...+..+
T Consensus 430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 430 CQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999888776544
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=93.39 E-value=6.8 Score=39.09 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
-+..-...++..+..+-++....+++++|..+.++..++.-- .--..+|..+++++++... ..+.........|
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQS 260 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhc
Confidence 344445567778888888888888999999888888777532 2235677888888876422 2222233223333
Q ss_pred cHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHcCChH
Q psy17306 91 QLQEALENYRHAVRLKPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~ 161 (904)
.-.+|. .+.+.+. .-.-..++.|..++|+..+|++.++...+-.|-. ..++-++...+....-|.
T Consensus 261 ~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 261 PQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred cchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1222211 2234578999999999999999999988877632 123334444444443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.32 E-value=1 Score=42.03 Aligned_cols=100 Identities=23% Similarity=0.141 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
..++..+|..|.+.|+.+.|++.|.++...... ..+.++++..+....+++.....+..++-... +. +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~--------~~-~ 106 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI--------EK-G 106 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------hc-c
Confidence 467889999999999999999999998776433 24577888888888899988888666554321 11 1
Q ss_pred chH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 662 DFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 662 ~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+. ..-..-|..+...|+|.+|...|-.+..-
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 111 12223355555666777766666655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.19 E-value=24 Score=42.28 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=46.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhh----c---CHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 16 HREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQC----R---KLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 16 ~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
.++.....|++|+..|+++-...|.. -++.+..|...+.+ | .+++|+..|++... .|..+.-|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 34455566666666666666666653 34445555444322 1 24444444443322 23334445555555
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
|..+|+|++-++++.-+++..|..|
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 5555555555555555555544444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.87 Score=34.84 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH---HHHHhhcCHHHHHHHHHHHHhc
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLS---SIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~ 71 (904)
..+...++.|..++...+..+|+..+.++++..++.++-+..+| .+|...|+|.+++.+..+-+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888889999999999999999988887766555554 4577788888887776655443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.44 E-value=1.4 Score=36.01 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=45.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
..+.|+|.+|++.+.+.++.... . ...+ ....++.++|.++...|++++|+..+++|+.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~----~-~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQ----S-NNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhh----c-ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678999998887777653221 1 1111 245678899999999999999999999999983
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=92.42 E-value=11 Score=36.53 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc-----ccH-HHHHHHHHHHHHh
Q psy17306 20 QAGDYESAERHCMQLWRQETNNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP-----LLA-EAYSNLGNVYKER 89 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~-~~~~~la~~~~~~ 89 (904)
...++++|+..|+++++..|... .++..+..++++.|+|++-...|.+.+.--. +.. .....+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34588999999999999888753 4677788899999999999888888765211 111 1111111111122
Q ss_pred CcHHHHHHHHHHHHhc--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 90 GQLQEALENYRHAVRL--KPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 90 g~~~~A~~~~~~al~~--~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
.+.+--...|+..+.. +.. ....-..+|.+|+..|+|.+-.+.+.+.-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 2233333333333321 111 123345688888888888877777666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.1 Score=46.45 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 17 REYQAGDYESAERHCM--QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
.....|+++++..... +.+..-| ..-...++..+.+.|..+.|+.+.+ +| ...+. +..+.|+.+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFE---LALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHH---HHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhH---HHHhcCCHHH
Confidence 3456788888766664 2222222 3345556666777777777776433 22 23333 3345566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 95 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 95 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
|.+..++ .+++..|..+|......|+++-|.++|.++
T Consensus 337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6554322 234556677777777777777777666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.35 Score=47.39 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=74.2
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN-LAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 66 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
.++....|+++..|...+..-.+.|.|.+--..|.+++..+|.+.+.|.. .+.-+...++.+.+...+.+++..+|+++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444567888899998888888899999999999999999999999887 55567778999999999999999999999
Q ss_pred hHHHHHHHH
Q psy17306 145 CVRSDLGNL 153 (904)
Q Consensus 145 ~~~~~la~~ 153 (904)
..|...-+.
T Consensus 177 ~iw~eyfr~ 185 (435)
T COG5191 177 RIWIEYFRM 185 (435)
T ss_pred hHHHHHHHH
Confidence 888765443
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=91.55 E-value=8.4 Score=41.83 Aligned_cols=174 Identities=19% Similarity=0.191 Sum_probs=107.4
Q ss_pred hCcHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCChhhHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRL------------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY-----NPDLYCVRSDLG 151 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la 151 (904)
...|++|...|.-++.. .|...+.+..++.++..+|+.+.|....++++=. .|.... .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~-----~ 325 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIP-----F 325 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccc-----c
Confidence 45688999999888775 3667789999999999999999998888888632 221100 0
Q ss_pred HHHHH-cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 152 NLLKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 152 ~~~~~-~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
..-++ --.+.+-...|-..+..-......|-+..|...++ -.+..+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cK---------------------------------lllsLd 372 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCK---------------------------------LLLSLD 372 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------HHhhcC
Confidence 00000 00112222233333333444556666666666664 667778
Q ss_pred ch-hHHHHHHHHHHHH-HhCCHHHHHHHHHHHH-----hhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Q psy17306 231 PL-LAEAYSNLGNVYK-ERGQLQEALENYRHAV-----RLKPDFIDGYINLAAALVAAGD---MEQAVQAYVTALQYNPL 300 (904)
Q Consensus 231 ~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al-----~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 300 (904)
|. +|.+...+..+|. +..+|.=-+..++..- ..-|+. ..-..+|..|..... -+.|...+.+|++..|.
T Consensus 373 p~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 373 PSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred CcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 87 6666666655553 4556665555555542 223443 334556777776665 57788999999999995
Q ss_pred c
Q psy17306 301 L 301 (904)
Q Consensus 301 ~ 301 (904)
.
T Consensus 452 v 452 (665)
T KOG2422|consen 452 V 452 (665)
T ss_pred H
Confidence 4
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.4 Score=44.94 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=68.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 120 LVAAGDMEQAVQAYVTALQYNPDL-YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 120 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
....++++++.+..... ++-|.- ......++..+.+.|.++.|+.+..--...-.+..+.|+++.|.++..
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~------- 342 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK------- 342 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC-------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH-------
Confidence 33456666655555311 111211 233455666666666666666666444444555566677777666554
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
..+++..|..||...+.+|+++-|..+|+++-. +..+..+|
T Consensus 343 -------------------------------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy 383 (443)
T PF04053_consen 343 -------------------------------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLY 383 (443)
T ss_dssp -------------------------------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHH
T ss_pred -------------------------------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHH
Confidence 222466888888888888888888888887422 33445555
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy17306 279 VAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al 295 (904)
...|+.+.-.++...+.
T Consensus 384 ~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 384 SSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHCT-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55666544444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.48 Score=46.49 Aligned_cols=86 Identities=7% Similarity=0.059 Sum_probs=73.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN-LGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 32 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
.++-...|+++..|...+......|-|.+--..|..++..+|.+++.|.. -+.-+...++++.+...|.++++.+|++|
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444567889999998888888999999999999999999999999987 55667888999999999999999999999
Q ss_pred HHHHHHH
Q psy17306 111 DGYINLA 117 (904)
Q Consensus 111 ~~~~~la 117 (904)
..|...-
T Consensus 177 ~iw~eyf 183 (435)
T COG5191 177 RIWIEYF 183 (435)
T ss_pred hHHHHHH
Confidence 8876543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=91.20 E-value=6.9 Score=42.82 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
..+...++|++|...-++.-+.- +++++..|+-+....++++|.+.|.++=
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 44556778888877655533222 3467777777778888888877776653
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.72 Score=29.49 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHhcCcCc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHH--FEKAVSLDPNF 697 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 697 (904)
+.++.+|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567788888888888888888 44666666643
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=90.61 E-value=12 Score=44.67 Aligned_cols=100 Identities=10% Similarity=0.033 Sum_probs=79.2
Q ss_pred hhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHH
Q psy17306 509 PNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588 (904)
Q Consensus 509 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~ 588 (904)
...+..++..+.+.....|...+-.++.-..+.+....+.-......+.+|+.-|++ +...|..|--|
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 555 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY------------LHGGVGAPLEY 555 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH------------hcCCCCCchHH
Confidence 355667788888888889998888877666666665555544444568888888887 55677778889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
...|.+|.++|++++-+++|.-+++..|.+|.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999888765
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=90.34 E-value=17 Score=37.95 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=108.0
Q ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh------------hcCHHHHHHHHHHHHhcCcccHH
Q psy17306 11 LLELAHREYQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQ------------CRKLDKSAHFSTLAIKQNPLLAE 77 (904)
Q Consensus 11 l~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~ 77 (904)
.+..-......|.+ .++++.=.+.+..+|....+|...-.++.. ..-.++-+.+...++..+|+...
T Consensus 31 ~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~ 110 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG 110 (421)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence 34444444555655 456677777888899877666654433332 22456667888889999999999
Q ss_pred HHHHHHHHHHHhC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 78 AYSNLGNVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG----DMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 78 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
+|+.+..++.+.+ ++..=++..+++++.+|.+..+|...=.+..... ...+=+++..+++..++.|..+|....
T Consensus 111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs 190 (421)
T KOG0529|consen 111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRS 190 (421)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHH
Confidence 9999999998776 4688899999999999999888876655554432 356778889999999999999998887
Q ss_pred HHHHH
Q psy17306 152 NLLKA 156 (904)
Q Consensus 152 ~~~~~ 156 (904)
.++..
T Consensus 191 ~lL~~ 195 (421)
T KOG0529|consen 191 LLLST 195 (421)
T ss_pred HHHHH
Confidence 77653
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.66 Score=46.77 Aligned_cols=89 Identities=19% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.....+++.+-.+.+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++..+...+.....
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 34556688888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHH
Q psy17306 744 KTEELNKKF 752 (904)
Q Consensus 744 ~~~~~~~~~ 752 (904)
+..+.+...
T Consensus 355 ~~~~~~~~~ 363 (372)
T KOG0546|consen 355 KKKQYNRKQ 363 (372)
T ss_pred HHHHHHHHH
Confidence 887776654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.05 E-value=4.5 Score=40.40 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
...++..++..+...|+++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999998875
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=89.99 E-value=13 Score=40.83 Aligned_cols=209 Identities=19% Similarity=0.176 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------------hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc--
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWR--------------QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL-- 74 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 74 (904)
|-.+|...+..=+++-|.+.|.++-. .....| --..+|.++...|++.+|.++|.+.=..+.-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 44566666666677777777766521 111112 2345677777788888888887653211100
Q ss_pred --cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHhcC
Q psy17306 75 --LAEAYSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVAAGDMEQAVQAY----------VTALQYN 140 (904)
Q Consensus 75 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~----------~~al~~~ 140 (904)
...-++..+.-+...|..++-....++-.+- +-..|. ..|..+...|+..+|+... +-+-+++
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 0112334455555555555444443332221 111122 2355666777777776532 2223334
Q ss_pred CChhhHHHHHHHHHHHcCChHHHHHHHHHHHh---hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD---LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 141 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
....+.+..++..+.....+.-|.++|..... +..++...+++++|..+.++
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~------------------------- 798 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEK------------------------- 798 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhh-------------------------
Confidence 44455566666666666666667666644333 33455566777777665542
Q ss_pred HHhhHHHHHhhcCch-hHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy17306 218 ESAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHA 260 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 260 (904)
.|. .+.+++-.|..+....++++|.+.|.+|
T Consensus 799 ------------hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 799 ------------HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ------------CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 222 2456667777777778888877766654
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=89.97 E-value=23 Score=35.59 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.-..|+.|..++|+..+|++.|+...+-.|-. -.++.||-..+.+..-|.+...++-+--++
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44578999999999999999999988887743 356677888888888777777776655544
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=89.86 E-value=6.4 Score=40.65 Aligned_cols=140 Identities=15% Similarity=0.058 Sum_probs=92.8
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCcHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-----K-PDFIDGY 622 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~a~ 622 (904)
....+.++.+|..+-...+......-.+. .+--.+..|+.+..+|...|+...-...+...+.. + ...+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRt--lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRT--LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 34446788888877766333211111111 11223678899999999999977666666655543 1 2234466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.|-..|...+.|+.|.....+.. |-.. ..+...+..++.+|.+..-+++|..|.++|-.|+...|++
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~------~pe~-~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSV------YPEA-ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccc------Cccc-cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 777888999999999988433321 1000 1122456778899999999999999999999999999975
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.2 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 113 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
-..+..||..+++.+-|+....+.+.++|....-+..-|.++..+.+|.+|...+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999988888889988888888888888888888887655
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.52 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.++..||.+-...++|++|+..|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888888888888888888776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=89.52 E-value=11 Score=39.27 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred HHHhCCchHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC--HHHHHHHH
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKER------------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD--MEQAVQAY 642 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~ 642 (904)
.+..+|+...+|+..-.++... .-.++-+.....+++.+|++..+|+.+.+++.+.+. +..=++
T Consensus 55 ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~-- 132 (421)
T KOG0529|consen 55 LLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQ-- 132 (421)
T ss_pred HHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHH--
Confidence 7788998888876654444321 235667788888999999999999999999998874 555566
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC----HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE----IWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 710 (904)
.+.++++.+|.+-.+|...-.+...... ..+=+++.++++..++.|-.+|.+...++..
T Consensus 133 ---------lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 133 ---------LCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred ---------HHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 6777778888888888877666655433 4677888999999999999999998887753
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.55 Score=27.40 Aligned_cols=23 Identities=26% Similarity=0.066 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFE 688 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~ 688 (904)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555555555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=88.47 E-value=14 Score=38.70 Aligned_cols=129 Identities=15% Similarity=-0.022 Sum_probs=74.2
Q ss_pred HHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q psy17306 538 ATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ---EALENYRHAVRL 614 (904)
Q Consensus 538 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~ 614 (904)
.++..+...|.+......|++|+.++-.+-+.-..|..+.++...+.+..-..+-+||+.+.+.. .|..-+.++-+-
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 34566777888888888888888887775555555556666666666666667777777766532 222222221110
Q ss_pred CCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH---HHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 615 KPDFIDGY-INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA---VAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 615 ~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
. ..+| -++..++.-.|. ..|..+ ..+..-|.+.+++|+-++|.++++.+
T Consensus 241 f---~~syGenl~Rl~~lKg~------------------------~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a 293 (568)
T KOG2561|consen 241 F---ERSYGENLSRLRSLKGG------------------------QSPERALILRLELLQGVVAYHQGQRDEAYEALESA 293 (568)
T ss_pred h---hhhhhhhhHhhhhccCC------------------------CChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0 0000 011111111111 112211 23455688899999999999999988
Q ss_pred Hhc
Q psy17306 691 VSL 693 (904)
Q Consensus 691 l~~ 693 (904)
...
T Consensus 294 ~~~ 296 (568)
T KOG2561|consen 294 HAK 296 (568)
T ss_pred HHH
Confidence 665
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=88.43 E-value=26 Score=38.29 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=71.0
Q ss_pred hcCHHHHHHHHHHHHhc------------CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-----------------
Q psy17306 55 CRKLDKSAHFSTLAIKQ------------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----------------- 105 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 105 (904)
...|++|...|.-++.. +|.....+..++.+...+|+.+-|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577888877777653 4556778888999999999988887777776632
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH
Q psy17306 106 ----KPDFID---GYINLAAALVAAGDMEQAVQAYVTALQYNPD-LYCVRSDLGNLLK 155 (904)
Q Consensus 106 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 155 (904)
.|.+-. +++..-..+.+.|-+.-|.++.+-.+.++|. ++-+...+..+|.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 123322 3334445556789999999999999999998 7766555555553
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=88.40 E-value=42 Score=36.57 Aligned_cols=91 Identities=12% Similarity=-0.006 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL----LAEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
....+.+.......|.++-..+..+.++...|+.+.|+..++..+. +. ....++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555667899888888899999999998888999998887 33 34467789999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHH
Q psy17306 101 HAVRLKPDFIDGYINLA 117 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la 117 (904)
.......-.--.|..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 98877644444444444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.53 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHH
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFY 722 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~ 722 (904)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 578899999999999999999875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=88.39 E-value=4.7 Score=32.94 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=43.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 595 YKERGQLQEALENYRHAVRLKPD---------FIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
..+.|++..|++.+.+....... ...+..++|.++...|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35679999999988888876321 2457889999999999999999988888864
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=87.88 E-value=9.3 Score=40.85 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHH--HHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTG--VLLLL--SSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 71 (904)
.+.-....+..+++.++|..|..++..+...-|.+.. .+..+ |.-+....++.+|.+.++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556778899999999999999999999886344333 33333 44456788999999999988764
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.9 Score=29.43 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
++..||.+-...++|++|+..|+++|+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=87.66 E-value=15 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
+.....+.+++.++..++.++..+..+..+|..
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 444555555555554444444444444444443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=6.4 Score=38.77 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 149 (904)
...++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|++.++..++.-|+.+.+-..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555677888999999999999999999999889999999999999999999999999998888755433
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.23 E-value=5.5 Score=39.22 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
...++=.++...++++.|..+-++.+.++|+++.-+...|.+|.++|-+.-|++.+...+...|++.....+..
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 44555566777788888888888888888888888888888888888888888888887777777665555433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.17 E-value=6.4 Score=36.89 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=56.0
Q ss_pred hhcCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHH
Q psy17306 54 QCRKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQ 128 (904)
Q Consensus 54 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~ 128 (904)
.+-.-+.|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++...|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 333446677777655432 1236778888887776 56889999999999988433 48899999999999999988
Q ss_pred HH
Q psy17306 129 AV 130 (904)
Q Consensus 129 A~ 130 (904)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=3.2 Score=41.42 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 103 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 103 (904)
|..=+....+.++. ....++..++..+...|+++.+...+++.+..+|.+-..|..+-..|+..|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555555555543 2467888999999999999999999999999999999999999999999999999999999987
Q ss_pred hc
Q psy17306 104 RL 105 (904)
Q Consensus 104 ~~ 105 (904)
..
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 74
|
|
| >KOG0128|consensus | Back alignment and domain information |
|---|
Probab=86.33 E-value=70 Score=36.89 Aligned_cols=72 Identities=11% Similarity=-0.026 Sum_probs=53.2
Q ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 667 WSNLGCVFN-AQGEIWLAIHHFEKAVSLDPNFLD-AYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 667 ~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
+-..|.++. .+++.+.|....+..+...-.... .|.....+-...|+...|..+++++.....+++++...+
T Consensus 464 ~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~ 537 (881)
T KOG0128|consen 464 LQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVL 537 (881)
T ss_pred HHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHH
Confidence 333444443 357888888888887777655544 788888888899999999999999998877776555443
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=86.26 E-value=2.6 Score=26.98 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q psy17306 586 EAYSNLGNVYKERGQLQEALEN--YRHAVRLKPD 617 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~ 617 (904)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=72 Score=36.95 Aligned_cols=145 Identities=14% Similarity=-0.040 Sum_probs=83.7
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
+....++++.+...+.. .-..........|.+|+++...|+.++|...|+++.. +.+ .|-.|+.-
T Consensus 321 ~Al~~~dw~~~~~~i~~-----------L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~ 385 (644)
T PRK11619 321 MALGTGDRRGLNTWLAR-----------LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ 385 (644)
T ss_pred HHHHccCHHHHHHHHHh-----------cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH
Confidence 34456677666655555 2121223566777788887778888888888887644 222 22222221
Q ss_pred HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 629 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
. +|..-. ... ...| .-...+... .-...+..+...|+...|...+..++.. .++.-...++.+-
T Consensus 386 ~--Lg~~~~-~~~-----~~~~-~~~~~~~~~-----~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A 449 (644)
T PRK11619 386 R--LGEEYP-LKI-----DKAP-KPDSALTQG-----PEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYA 449 (644)
T ss_pred H--cCCCCC-CCC-----CCCC-chhhhhccC-----hHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 1 121100 000 0000 000011111 2345677788899999999999988875 3456678888888
Q ss_pred HHhcchhHHHHHHHHh
Q psy17306 709 KEARIFDRANTLFYVS 724 (904)
Q Consensus 709 ~~~g~~~~A~~~~~~a 724 (904)
...|.++.|+....++
T Consensus 450 ~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 450 FNQQWWDLSVQATIAG 465 (644)
T ss_pred HHCCCHHHHHHHHhhc
Confidence 8999999998877654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.91 E-value=8.2 Score=36.19 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC----cHHHHHHHHHHHHHhcchhHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----FLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A~ 718 (904)
+++...+.||..|. ..+.++|+..+.++|++.+. +++++..|+.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56889999998777 67889999999999999433 5999999999999999999884
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.21 E-value=11 Score=29.16 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCC
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDF 109 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~ 109 (904)
++...+.++|+..++++++..++.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCCh
Confidence 334444444444444444444333
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.22 E-value=73 Score=34.51 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=61.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 50 SIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129 (904)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 129 (904)
.++...-++.-....+.+++... .+..+++.++.||... ..++=....++.++.+-++...-..++..|.. ++...+
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~ 150 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKA 150 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhH
Confidence 33334444555556667776654 3477888888888887 45677778888888887777777777777766 778888
Q ss_pred HHHHHHHHhc
Q psy17306 130 VQAYVTALQY 139 (904)
Q Consensus 130 ~~~~~~al~~ 139 (904)
..+|.+++..
T Consensus 151 a~~f~Ka~yr 160 (711)
T COG1747 151 AEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHH
Confidence 8888888754
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=82.76 E-value=7.4 Score=29.86 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN 669 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~ 669 (904)
..+...|.-+-..|++++|+.+|+++++ .+.+++...|+.+.....
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe----~L~q~~~~~pD~~~k~~y 52 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE----VLSQIVKNYPDSPTRLIY 52 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHHHHHhCCChHHHHHH
Confidence 3445556666778999999999988888 788888888887664443
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=81.74 E-value=2.9 Score=42.36 Aligned_cols=114 Identities=23% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----------CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLK-----------PD--------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
..|.-....++++.|..-|.+++..- ++ -...+.+++.+-...+.+..|+.
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~---------- 296 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF---------- 296 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee----------
Confidence 34555667777888877777776531 11 12345667777778888888877
Q ss_pred hhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 651 ~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
....++..++....+++.+|..+....++++|++.+..+....|++..+...+..+-....++
T Consensus 297 -~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 297 -RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred -ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 555566678888999999999999999999999999999999999988877776665544433
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=81.02 E-value=77 Score=33.26 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=91.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC-C--------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----C-cccHHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQET-N--------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----N-PLLAEAYSN 81 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~-p~~~~~~~~ 81 (904)
.++.+.++.+|..+-+..+..-. . .+..|+.+..+|-..|+...-...+...+.. + ...+.....
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34557899999988877654211 1 2456777777888888876666666655542 1 123456667
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
+-..|...+.|+.|-....++.-- +...+..++.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 778888999999998887776521 11235567889999999999999999999999999975
|
|
| >KOG4279|consensus | Back alignment and domain information |
|---|
Probab=81.00 E-value=61 Score=36.71 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHH---HhCcHHHHHHHHHHHHhcC-CCCH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA------EAYSNLGNVYK---ERGQLQEALENYRHAVRLK-PDFI 110 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~ 110 (904)
+++....+-..|....+|+.-+++.+..-++ |+.. ...+..+.++- +-|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 5777888888899999999888887765443 3211 11222233332 3478899999888888764 4556
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC-hHHHHHHHHHHHhhHHHHHHc
Q psy17306 111 DGYINLAAALVA---------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR-LDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 111 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~l~~~~~~~ 180 (904)
+.+...|++|-. .+..+.|+++|+++.+..|... .-.+++.++...|. ++...++-..-..++.+..+.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 777777777753 4567889999999999999753 33456666666553 555555555566666667666
Q ss_pred CCHHHHHHHH
Q psy17306 181 GRLDEAKNLH 190 (904)
Q Consensus 181 g~~~~A~~~~ 190 (904)
|..++-..+.
T Consensus 358 G~leklq~YW 367 (1226)
T KOG4279|consen 358 GALEKLQEYW 367 (1226)
T ss_pred chHHHHHHHH
Confidence 6665544433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.40 E-value=24 Score=34.98 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
.+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4556677888999999999999999999999999999999999999999999998876544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.23 E-value=6.5 Score=38.74 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++...|+--.|...|++..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445567888999999999999999999999999999999999999999988888886553
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=80.10 E-value=27 Score=38.38 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
....++..+..+|-.++| |++.++ +.-.+ .+..+.|+++.|.+ .. ...++..-
T Consensus 616 ~rt~va~Fle~~g~~e~A-------L~~s~D-~d~rF---elal~lgrl~iA~~-----------la-----~e~~s~~K 668 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQA-------LELSTD-PDQRF---ELALKLGRLDIAFD-----------LA-----VEANSEVK 668 (794)
T ss_pred hhhhHHhHhhhccchHhh-------hhcCCC-hhhhh---hhhhhcCcHHHHHH-----------HH-----HhhcchHH
Confidence 344455555555554444 444443 22222 23445677777766 22 22344566
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHHHHH------------H-HHHHHhcchhHHHHHHHHh
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAYINL------------G-NVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l------------a-~~~~~~g~~~~A~~~~~~a 724 (904)
|-.||.+....|++..|.++|.++... ...+...+..+ | .+|...|+++++++.+.+.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 888888888888888888888887665 12233333333 3 3567778888888877665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 904 | ||||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 5e-92 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-81 | ||
| 2zof_A | 479 | Crystal Structure Of Mouse Carnosinase Cn2 Complexe | 7e-68 | ||
| 3dlj_A | 485 | Crystal Structure Of Human Carnosine Dipeptidase 1 | 3e-50 | ||
| 1ofc_X | 304 | Nucleosome Recognition Module Of Iswi Atpase Length | 6e-32 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 3e-19 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 7e-19 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 4e-17 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-16 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-05 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-15 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-15 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-05 | ||
| 2nog_A | 173 | Sant Domain Structure Of Xenopus Remodeling Factor | 7e-15 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 2e-08 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 7e-08 | ||
| 2pok_A | 481 | Crystal Structure Of A M20 Family Metallo Peptidase | 2e-08 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 7e-08 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-07 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-07 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-07 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-05 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 8e-05 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 2e-06 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 3e-06 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 6e-06 | ||
| 1fch_A | 368 | Crystal Structure Of The Pts1 Complexed To The Tpr | 1e-05 | ||
| 3r9a_B | 328 | Human Alanine-Glyoxylate Aminotransferase In Comple | 1e-05 | ||
| 2c0m_A | 319 | Apo Form Of The Tpr Domain Of The Pex5p Receptor Le | 2e-05 | ||
| 2j9q_A | 328 | A Novel Conformation For The Tpr Domain Of Pex5p Le | 2e-05 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 2e-05 | ||
| 2c0l_A | 305 | Tpr Domain Of Human Pex5p In Complex With Human Msc | 2e-05 | ||
| 4eqf_A | 365 | Trip8b-1a#206-567 Interacting With The Carboxy-Term | 8e-05 | ||
| 3cvq_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (pts1) | 1e-04 | ||
| 3cv0_A | 327 | Structure Of Peroxisomal Targeting Signal 1 (Pts1) | 1e-04 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 3e-04 | ||
| 2pl2_A | 217 | Crystal Structure Of Ttc0263: A Thermophilic Tpr Pr | 6e-04 | ||
| 2y9y_A | 374 | Chromatin Remodeling Factor Isw1a(Del_atpase) Lengt | 7e-04 |
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With Mn Bestatin Length = 479 | Back alignment and structure |
|
| >pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1 Length = 485 | Back alignment and structure |
|
| >pdb|1OFC|X Chain X, Nucleosome Recognition Module Of Iswi Atpase Length = 304 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2NOG|A Chain A, Sant Domain Structure Of Xenopus Remodeling Factor Iswi Length = 173 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From Streptococcus Pneumoniae Length = 481 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of Human Pex5 Length = 368 | Back alignment and structure |
|
| >pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With The Tpr Domain Of Human Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor Length = 319 | Back alignment and structure |
|
| >pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p Length = 328 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2 Length = 305 | Back alignment and structure |
|
| >pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal Seven Residues Of Hcn2 Length = 365 | Back alignment and structure |
|
| >pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed To Pts1 Peptide (7- Skl) Length = 327 | Back alignment and structure |
|
| >pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide Length = 327 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In Thermus Thermophilus Hb27 Length = 217 | Back alignment and structure |
|
| >pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 276 bits (707), Expect = 2e-83
Identities = 93/212 (43%), Positives = 131/212 (61%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
++++C +D HSG FGG +HE M DL+ ++G LV+ +G IL+P IY +V PL + E
Sbjct: 225 SYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEE 284
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ I D E++R + K K ++LM WRYPSLS+HGIEGAF PG KTVIP
Sbjct: 285 INTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIP 344
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
G+V+GKFSIR+VP+ VEK V +L +++ RNS NK + W N +
Sbjct: 345 GRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQ 404
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y+AA RA + V+ EPD+ R+G +IPI F+
Sbjct: 405 YLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQ 436
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 3e-83
Identities = 123/212 (58%), Positives = 150/212 (70%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
C I++EC+ KDLHSG++GGSVHEAMTDLI +MG LV+ GKILIP I V P+ D E
Sbjct: 218 CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLVDKKGKILIPGINDAVAPVTDEE 277
Query: 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471
Y+ IDFD E+F + L + K +LM RWRYPSLSLHGIEGAFSG G KTVIP
Sbjct: 278 HALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIP 337
Query: 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531
KVVGKFSIR+VP+ P+ V + V YL++ + SPNKFK Y+ GK W ++ HP+
Sbjct: 338 RKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPH 397
Query: 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
Y A RA K V+ VEPDLTREGGSIP+TLTF+
Sbjct: 398 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQ 429
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 249 bits (637), Expect = 1e-73
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 9/215 (4%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411
+ K++ A D+HS +GG V A L+ + L +G+IL+ +Y++V+ + E
Sbjct: 228 VTFDAKVKSADVDIHSS-YGGVVESAPWYLLQALQSLRAADGRILVEGLYEEVQEPNERE 286
Query: 412 EQFYEKI-DFDTEDFRTAIDHPK-LTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469
E + E+ L + ++ L + P+L++ GI+ + G G KT+
Sbjct: 287 MALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQGQGVKTI 346
Query: 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH 529
+P + K +R+VP P V + + L+ +N +K + Y S+R++
Sbjct: 347 LPAEASAKLEVRLVPGLEPHDVLEKIRKQLD-----KNGFDKVELYYTLGEMSYRSDMSA 401
Query: 530 PNYVAAARATKYVYNVEPD-LTREGGSIPITLTFE 563
P + K Y L G+ P+ F+
Sbjct: 402 PAILNVIELAKKFYPQGVSVLPTTAGTGPMHTVFD 436
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 1e-67
Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 3/214 (1%)
Query: 352 CAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPN-GKILIPHIYKDVEPLGDT 410
+ +E ++ +HSG G V ++ ++ ++ + N G+I +P +Y D+
Sbjct: 210 LVGKLTVELINEGVHSGSASGIVADSFRVARQLISRIEDENTGEIKLPQLYCDIPDERIK 269
Query: 411 E-EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTV 469
+ +Q E + ID K DK Q++++R P+L++ G +G + V
Sbjct: 270 QAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPAIADAGNV 329
Query: 470 IPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEH 529
+ K S+R+ P P+ + L + N+ FK S
Sbjct: 330 MRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPY-NAKVDFKIQNGGSKGWNAPLLSD 388
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFE 563
AA+ A+ Y+ EGG+IP
Sbjct: 389 WLAKAASEASMTYYDKPAAYMGEGGTIPFMSMLG 422
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 4e-64
Identities = 175/290 (60%), Positives = 203/290 (70%), Gaps = 56/290 (19%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
G +ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
VQAYV+ALQYNPDLYCVRSDLGNLLKALGRL+EAK Y LKA+
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY---------LKAI--------- 162
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
+P N+ A A+SNLG V+ +G+
Sbjct: 163 ---ETQP-----------NF------------------------AVAWSNLGCVFNAQGE 184
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ A+ ++ AV L P+F+D YINL L A ++AV AY+ AL +P
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 2e-53
Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
AGD E A + + + + V L ++ +L+++ AI+ P A A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A ++AV AY+ AL
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
+P+ V +L + G +D A D Y +L N LK G + EA
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA- 290
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
C Y A++ P A++ +NL N+ +E+
Sbjct: 291 -----------------EDC-Y--NT------------ALRLCPTHADSLNNLANIKREQ 318
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G ++EA+ YR A+ + P+F + NLA+ L G +++A+ Y A++ +P
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 7e-47
Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 56/281 (19%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ G + A H R + + + L++ ++ + A++ NP L
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
S+LGN+ K G+L+EA Y A+ +P+F + NL A G++ A+ + A+
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198
+P+ +LGN+LK D A Y L+AL ++ P
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAY---------LRAL------------SLSP-- 234
Query: 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258
N+ A + NL VY E+G + A++ YR
Sbjct: 235 ---------NH------------------------AVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
A+ L+P F D Y NLA AL G + +A Y TAL+ P
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 9e-40
Identities = 80/141 (56%), Positives = 96/141 (68%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P + Y NL G ++ A++ Y A++ PD +L L A G +E
Sbjct: 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A +CYLKAIET+P+FAVAWSNLGCVFNAQGEIWLAIHHFEKAV+LDPN
Sbjct: 153 EAK-----------ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 697 FLDAYINLGNVLKEARIFDRA 717
FLDAYINLGNVLKEARIFDRA
Sbjct: 202 FLDAYINLGNVLKEARIFDRA 222
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 2e-39
Identities = 93/156 (59%), Positives = 108/156 (69%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+CR+LD+SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDG
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
YINLAAALVAAGDME AVQ Y+ A++ PD S+LG + A G +
Sbjct: 104 YINLAAALVAAGDMEGAVQ-----------AYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + KA+ PNF A+ NLG V A
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 1e-38
Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 56/216 (25%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ +P A + NL VY E+G + A++ YR A+ L+P F D Y NLA AL G +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
+A Y TAL+ P D ++L N+ + G ++EA
Sbjct: 289 EAEDCYNTALRLCPTHA--------------------DSL---NNLANIKREQGNIEEAV 325
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
L+ + A++ P A A+SNL +V +++
Sbjct: 326 RLYRK---------------------------------ALEVFPEFAAAHSNLASVLQQQ 352
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 353 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-38
Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AI+ P A A+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+AV YL+A+ P+ AV NL CV+ QG I LAI + +A+ L P+
Sbjct: 221 RAVA-----------AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F DAY NL N LKE A
Sbjct: 270 FPDAYCNLANALKEKGSVAEA 290
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+D + AI+ P +AY NL N KE+G + EA + Y A+RL P D NL
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A G++E+AV+ Y KA+E P+FA A SNL V QG++ A+
Sbjct: 312 ANIKREQGNIEEAVR-----------LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKE 710
H+++A+ + P F DAY N+GN LKE
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-36
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
++ + A++ NP L S+LGN+ K G+L+EA Y A+ +P+F + NL
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A G++ A+ + KA+ P+F A+ NLG V A+
Sbjct: 176 GCVFNAQGEIWLAI-----------HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ +A+SL PN + NL V E + D A
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 3e-35
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ +P A + NL VY E+G + A++ YR A+ L+P F D Y NLA AL G +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A CY A+ P A + +NL + QG I A+ + KA+ + P
Sbjct: 289 EAED-----------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F A+ NL +VL++ A
Sbjct: 338 FAAAHSNLASVLQQQGKLQEA 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-33
Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + +Q P L +++ + +L + A++ P + Y NL
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
G +++A++ Y A+ +PDF + NL A G++ A+
Sbjct: 74 GNVYKERGQLQEAIE-----------HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A+ +P+ +LGN+LK + A
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
LG L E ++ A ++ N+ V L+ ++++ +D +
Sbjct: 209 LGNVLKEA-------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
AI+ P +AY NL N KE+G + EA + Y A+RL P D NLA G++
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGN 175
E+AV+ Y AL+ P+ S+L ++L+ G+L EA Y S++GN
Sbjct: 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Query: 176 LLKALG 181
LK +
Sbjct: 382 TLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647
L + + G + A + R +PD + L++ ++++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH------- 54
Query: 648 YNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
AI+ P A A+SNLG V+ +G++ AI H+ A+ L P+F+D YINL
Sbjct: 55 ----FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 708 LKEARIFDRA 717
L A + A
Sbjct: 111 LVAAGDMEGA 120
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G ++
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+A+ Y +AI P FA A+SN+G +
Sbjct: 357 EALM-----------HYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-16
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
G + LA AGD E A + ++ PD L + +
Sbjct: 1 GPMELAHREYQAGDFEAAER-----------HCMQLWRQEPDNTGVLLLLSSIHFQCRRL 49
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ H A+ +P +AY NLGNV KE A
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L L E G AE R + L L++I + ++++
Sbjct: 277 LANALKEK-------GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L G+ A H + +P+ + L ++ + R DR+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS 56
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 2e-52
Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 36/301 (11%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
++ LA R Y D++ + + ++ + L + + K ++ + S +
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 71 QNPLLAEAYSNLGNVYKERGQLQE-ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
P ++ +G Y G E A A L+ + +I + + +QA
Sbjct: 85 LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLK 178
+ AY TA Q + +G A+ + V ++G +
Sbjct: 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238
G A+ + ++ + V + +
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKW------------------------EPLLN 240
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
NLG+V ++ + EAL+ +R A+ L P Y + G+ E AV + TAL
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 299 P 299
Sbjct: 301 R 301
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 6e-37
Identities = 39/300 (13%), Positives = 75/300 (25%), Gaps = 55/300 (18%)
Query: 22 GDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYS 80
G Y + +E + N V++ L+ H+ +++ ++++P A
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQY 139
E + E V L P + + + G E A + A
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEAKN 188
G+ D+A Y + +G A+
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE- 179
Query: 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248
FS A+ P +G V + G
Sbjct: 180 -------------------------------RFFSQ-ALSIAPEDPFVMHEVGVVAFQNG 207
Query: 249 QLQEALENYRHAVRL---------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ + A + + A+ + NL +A+ + AL P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 8e-35
Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 47/224 (20%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A + +G Y + A + A+ + P+ + G+ +
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
A + ++ AL+ + + + ++LG++ + L + EA
Sbjct: 211 TAEKWFLDALEKIKAIGNEVTV--------------DKWEPLLNNLGHVCRKLKKYAEAL 256
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ H + A+ P A YS +G ++
Sbjct: 257 DYHRQ---------------------------------ALVLIPQNASTYSAIGYIHSLM 283
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
G + A++ + A+ L+ D L + +A
Sbjct: 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-34
Identities = 25/249 (10%), Positives = 58/249 (23%), Gaps = 45/249 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
++ + +L + + + + P LV
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS------------DLGN 175
+ + P +G +G +E Y ++ G+
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235
D+A A + T A +
Sbjct: 134 SFAVESEHDQAM--------------------------------AAYFT-AAQLMKGCHL 160
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
+G Y + A + A+ + P+ + G+ + A + ++ AL
Sbjct: 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220
Query: 296 QYNPLLKKE 304
+ + E
Sbjct: 221 EKIKAIGNE 229
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 9e-34
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 13/192 (6%)
Query: 531 NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590
++ + T V +P + I E K ++ + S + P ++
Sbjct: 37 DFKMCYKLTSVVMEKDPFHA-SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95
Query: 591 LGNVYKERGQLQE-ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+G Y G E A A L+ + +I + + +QA+
Sbjct: 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM---------- 145
Query: 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709
+ Y A + + +G + LA F +A+S+ P +G V
Sbjct: 146 -AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204
Query: 710 EARIFDRANTLF 721
+ + A F
Sbjct: 205 QNGEWKTAEKWF 216
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 2/141 (1%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + +G Y + A + A+ + P+ + G+ +
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK 210
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A + ++ AL+ + + T + +NLG V + A+ + +A+ L P
Sbjct: 211 TAEKWFLDALEKIKA--IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 697 FLDAYINLGNVLKEARIFDRA 717
Y +G + F+ A
Sbjct: 269 NASTYSAIGYIHSLMGNFENA 289
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 8e-30
Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
K + + + + A A+ G+ + + +A+ Y A +L +
Sbjct: 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
+ + + A + + +A+ P+ +G V GE A
Sbjct: 165 IGLEYGLTNNSKLAER-----------FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213
Query: 685 HHFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRA 717
F A+ + NLG+V ++ + + A
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ + +L + + + + P LV
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW-LAIHHFEKAVSLDP 695
+ K ++ P V+W +GC + G A + KA +L+
Sbjct: 74 ELFY-----------LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
+ A+I G+ D+A
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQA 144
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KP 616
+ F + A+ P +G V + G+ + A + + A+
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
+ NL +A+ + +A+ P A +S +G + +
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALD-----------YHRQALVLIPQNASTYSAIGYIHSL 282
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
G A+ +F A+ L + + LG+ ++
Sbjct: 283 MGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 6e-26
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 12/157 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ +++ ++++P A E + E V L P
Sbjct: 33 YYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92
Query: 622 YINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ + + G E A + KA + AW G F + E
Sbjct: 93 WFAVGCYYLMVGHKNEHARR-----------YLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + A L + +G A
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 16/176 (9%)
Query: 5 AQLGIGLLELAHREYQA-GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
L IGL EY + + AER Q + V+ + + FQ + +
Sbjct: 161 PMLYIGL------EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214
Query: 64 FSTLAIKQNPLL---------AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114
+ A+++ + +NLG+V ++ + EAL+ +R A+ L P Y
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS 274
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ G+ E AV + TAL D + LG+ ++ EA ++
Sbjct: 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADIK 330
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLL---------AEAYSNLGNVYKERGQLQEALENYRHAV 612
F+ + + + A+++ + +NLG+V ++ + EAL+ +R A+
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263
Query: 613 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672
L P Y + G+ E AV + A+ R D + + LG
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVD-----------YFHTALGLRRDDTFSVTMLGH 312
Query: 673 VFNAQGE 679
Sbjct: 313 CIEMYIG 319
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
K ++ + A+ P A YS +G ++ G + A++ + A+ L+ D L
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Query: 626 AAALVAAGDMEQAVQAY 642
+ +A
Sbjct: 311 GHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 6/69 (8%), Positives = 16/69 (23%)
Query: 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712
++++ + +L + + + DP L E
Sbjct: 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN 70
Query: 713 IFDRANTLF 721
+ L
Sbjct: 71 KANELFYLS 79
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 3e-51
Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 37/300 (12%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL A + + ++ + N V L + + + +K S +
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
++P A + +G Y ++ EA + + + P F +I A + G+ +QA+
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKA 179
AY TA + + LG LG + A + + ++LG +
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
+ A N QNA++ A ++N
Sbjct: 488 KSDMQTAINHF-----------QNALLLV---------------KKTQSNEKPWAATWAN 521
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
LG+ Y++ A++ + L + + + +A + A+ +L +P
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 5e-35
Identities = 35/284 (12%), Positives = 78/284 (27%), Gaps = 44/284 (15%)
Query: 33 QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 92
+++ L +L + A +I ++ + R +
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321
Query: 93 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152
+ L + + P +D Y A+L +G+ + + +P+ +G
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381
Query: 153 LLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEAKNLHTENIKPVTMKV 201
+ ++ EA+ + D + G D+A
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI-------------- 427
Query: 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261
+ ++T A + Y LG + + G + A E + +
Sbjct: 428 ------------------SAYTT-AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 262 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKED 305
L L DM+ A+ + AL + +
Sbjct: 469 ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 2e-32
Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
E + +K S + ++P A + +G Y ++ EA + + + P F
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+I A + G+ +QA+ AY TA + +L + LG G I
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL-----------PYLFLGMQHMQLGNIL 458
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LA + + + +L LG V A
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+I ++ + R + + L + + P +D Y A+L +G+
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ ++ P+ AV W +G + +I A +F K+ ++DP
Sbjct: 357 KLYL-----------ISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F A+I + D+A
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQA 426
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-28
Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 18/152 (11%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDF 618
+ + + + + LG V + +Q A+ ++++A+ L + +
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ NL A + A+ + + + A + + V+ +
Sbjct: 516 AATWANLGHAYRKLKMYDAAID-----------ALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
LAI H +++++ PN + A L L+E
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 9e-28
Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 4/141 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + Y LG + + G + A E + + L L DM+
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ + AL K +A W+NLG + AI + + L N
Sbjct: 493 TAINHFQNALLLVK----KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + + V +I A
Sbjct: 549 DANVHTAIALVYLHKKIPGLA 569
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +T ++ +P + Y E G+ + V P+
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
++ + + + +A + + K+ P F AW F +GE
Sbjct: 376 WLAVGIYYLCVNKISEARR-----------YFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AI + A L Y+ LG + A
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 39/307 (12%), Positives = 77/307 (25%), Gaps = 41/307 (13%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L H Y+ A ++ T N L+ ++ ++ T
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKV-LDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145
Query: 71 QNPLLA----------------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 114
N A A + LG R + A + +K +
Sbjct: 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA-SMCY 204
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+ ++A + Y AL + Y L +
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS---------------------N 243
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG--GRKPTTLESAHFSTLAIKQNPL 232
+LL A D L+ ++ L A +I
Sbjct: 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
++ + R + + L + + P +D Y A+L +G+ +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 293 TALQYNP 299
+ +P
Sbjct: 364 DLVDRHP 370
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 26/183 (14%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
RK +K+A+ + L A G VY A E Y+ A+ + + +
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNP--------------------------SCYLKAIE 658
L + + D E + + Y+ YL +I
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+ + + K + +DP LD Y L E+ ++
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 719 TLF 721
+
Sbjct: 360 LIS 362
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 53/198 (26%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A + Y LG + + G + A E + + L L DM+
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 128 QAVQAYVTALQY-------NPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CV 169
A+ + AL ++LG+ + L D A D V
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Query: 170 RSDLGNLLKALGRLDEA-KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+ + + A +LH ++
Sbjct: 553 HTAIALVYLHKKIPGLAITHLHE----------------------------------SLA 578
Query: 229 QNPLLAEAYSNLGNVYKE 246
+P A L +E
Sbjct: 579 ISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 7/144 (4%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK-------Q 71
Q G+ A + + + +L L + F + + + A+
Sbjct: 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
A ++NLG+ Y++ A++ + L + + + +A + A+
Sbjct: 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571
Query: 132 AYVTALQYNPDLYCVRSDLGNLLK 155
+L +P+ L L+
Sbjct: 572 HLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 7e-12
Identities = 40/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)
Query: 20 QAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHF----STLAIKQNPLL 75
G++ + H + + + S+ + + ST
Sbjct: 15 TPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERN 74
Query: 76 AEAYSNLGNVYKERGQLQEALENYRH---------AVRLKPDFIDGYINLAAALVAAGDM 126
A+ +L R +AL ++ + + + D + LA GD
Sbjct: 75 AQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDY 133
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
+A YN C R L L A +L G A
Sbjct: 134 ARAKCLLTKEDLYNRSSAC-RYLAAFCLVKLYDWQGALNLL------GETNPFRKDEKNA 186
Query: 187 KNLHTENIKPVTMKVQNAIVCNYG------GRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
L ++ +K++ ++ G + A+ + EA+ L
Sbjct: 187 NKLLMQDGG---IKLEASMCYLRGQVYTNLSNFD---RAKECYKEALMVDAKCYEAFDQL 240
Query: 241 GNVYKERGQLQEALE---NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
+ + + L NY + F+ L + D + + Y++++
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 298 NP 299
Sbjct: 301 LE 302
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 21/193 (10%), Positives = 47/193 (24%), Gaps = 30/193 (15%)
Query: 558 ITLTFECRKLDKSAHFSTLAIK---QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 614
L + ++S+ LA + A + LG R + A + +
Sbjct: 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196
Query: 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC---------------------- 652
K + + ++A + Y AL + C
Sbjct: 197 KLEA-SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255
Query: 653 ----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y + F + L + + + +++ D + + L
Sbjct: 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 709 KEARIFDRANTLF 721
F +
Sbjct: 316 FVRSRFIDVLAIT 328
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 26/203 (12%), Positives = 50/203 (24%), Gaps = 42/203 (20%)
Query: 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 602
N P+T D S A + L + + + Q +
Sbjct: 42 NNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK 101
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS----------- 651
A + + + D + LA GD +A YN S
Sbjct: 102 CAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160
Query: 652 ----------------------------CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
++ + + A G V+ A
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRA 219
Query: 684 IHHFEKAVSLDPNFLDAYINLGN 706
+++A+ +D +A+ L +
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVS 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 7e-49
Identities = 52/292 (17%), Positives = 96/292 (32%), Gaps = 27/292 (9%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L ++A + P EA+ +LG E + A+ HA L P I
Sbjct: 30 SMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ LA + + A+ + L P + S + L+
Sbjct: 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ------- 142
Query: 171 SDLGNLLKALGRLDEAKNLHTE--NIKPVTMKVQN--AIVCNYGGRKPTTLESA--HFST 224
A E + L + P ++ ++ N +SA +
Sbjct: 143 -SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN----YDSAAANLRR 197
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
A++ P A+ ++ LG + QEAL+ Y A+ + P ++ N+A +
Sbjct: 198 -AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256
Query: 285 EQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALW--RRGALVMMKRP 334
+ A + V A+ E +++W R L +M RP
Sbjct: 257 DLAAKQLVRAIYMQV--GGTTPTGE----ASREATRSMWDFFRMLLNVMNRP 302
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-44
Identities = 42/259 (16%), Positives = 67/259 (25%), Gaps = 59/259 (22%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
+ E G + L EA + + P+ + + +L
Sbjct: 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------------------- 167
A+ A A +P V + L + A
Sbjct: 72 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 168 -------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA 220
A E + L
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA---------------------------- 163
Query: 221 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
A++ NP A+ +++LG +Y A N R AV L+PD + L A L
Sbjct: 164 -----ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 281 AGDMEQAVQAYVTALQYNP 299
++A+ AY AL NP
Sbjct: 219 GNRPQEALDAYNRALDINP 237
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 4e-32
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 14/192 (7%)
Query: 529 HPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAY 588
P Y + D+ + + A++ NP A+ +
Sbjct: 119 QPQYEQLGSVN---LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175
Query: 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
++LG +Y A N R AV L+PD + L A L ++A+
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD-------- 227
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y +A++ P + N+ ++ + LA +A+ +
Sbjct: 228 ---AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284
Query: 709 KEARIFDRANTL 720
+ L
Sbjct: 285 TRSMWDFFRMLL 296
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-32
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 4/156 (2%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L ++A + P EA+ +LG E + A+ HA L P I + L
Sbjct: 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPS----CYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
A + + A+ + L P + + + F A E
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ ++PN + +LG + + +D A
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 26/156 (16%)
Query: 577 AIKQNPLLAEAYS---------------NLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ P + S + + + +E A+ + P+
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ +L + + + A +A+E RPD A W+ LG
Sbjct: 175 HASLGVLYNLSNNYDSAAA-----------NLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + +A+ ++P ++ N+ +D A
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 14/143 (9%), Positives = 31/143 (21%), Gaps = 11/143 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ E G + L EA + + P+ + + +L
Sbjct: 12 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A+ A A P + L + A+ + P
Sbjct: 72 GLAIIA-----------LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120
Query: 696 NFLDAYINLGNVLKEARIFDRAN 718
+ + + +
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQS 143
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-26
Identities = 35/262 (13%), Positives = 69/262 (26%), Gaps = 48/262 (18%)
Query: 10 GLLELAHREYQ---AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
A + + + + L + + + +
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
A++ NP A+ +++LG +Y A N R AV L+PD + L A L
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
++A+ AY AL NP V ++ + + D A L++A+
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA---------AKQLVRAI------ 267
Query: 187 KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
++ + + +
Sbjct: 268 ------YMQV-----------------------GGTTPTGEASREATRSMWDFFRMLLNV 298
Query: 247 RGQLQEALENYRHAV-RLKPDF 267
+ Y V +F
Sbjct: 299 MNRPDLVELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 565 RKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623
D + A+ A++ P A+ ++ LG + QEAL+ Y A+ + P ++
Sbjct: 186 NNYDSAAANLRR-AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD--FAVAWSNLGCVFNAQGEIW 681
N+A + + A + V A+ W + N
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVG-GTTPTGEASREATRSMWDFFRMLLNVMNRPD 303
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVL 708
L + + V L ++L
Sbjct: 304 LVELTYAQNVEP----FAKEFGLQSML 326
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 3e-21
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
G + + +Y + + + +++ ++ +A + +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAAL-----------AFEAVCQ 49
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
P+ AW +LG + LAI A LDP + + L
Sbjct: 50 AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 12/69 (17%), Positives = 18/69 (26%)
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
N + Y + G + A FE P +A+ +LG
Sbjct: 6 NNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Query: 709 KEARIFDRA 717
E A
Sbjct: 66 AENEKDGLA 74
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 6/52 (11%), Positives = 19/52 (36%)
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G + + +Y + + + +++ ++ +A A+ Q P
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP 52
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 61/279 (21%), Positives = 95/279 (34%), Gaps = 74/279 (26%)
Query: 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91
MQ Q GV L + + D + A+K+NP EA L + G
Sbjct: 1 MQTAEQNPLRLGVQL------YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL 54
Query: 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAA-----------GDMEQAVQAYVTALQYN 140
+ ALEN + V P ++ GY+ L+ A VA G +EQA+ A + N
Sbjct: 55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMK 200
P + G + LG D+A+
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASL--------------------------------- 141
Query: 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 260
+ A+ A++ E S L +Y G+L EAL Y A
Sbjct: 142 -KQAL--------------------ALEDT---PEIRSALAELYLSMGRLDEALAQYAKA 177
Query: 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ P +D + A+AL+ G E+A +A ++
Sbjct: 178 LEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 4e-38
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 1/141 (0%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+K+NP EA L + G + ALEN + V P ++ GY+ L+ A VA
Sbjct: 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + L+ S A P +A G V+ GE A ++A++L+
Sbjct: 91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ L + D A
Sbjct: 151 P-EIRSALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 6e-34
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKE-----------RGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + P Y L Y +G L++AL + A R+ P + ++
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
G+ ++A + AL S L ++ + G + A+
Sbjct: 125 GLVYALLGERDKAEASLKQALALED------------TPEIRSALAELYLSMGRLDEALA 172
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ KA+ P LD + + L + A
Sbjct: 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 8e-33
Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ LG G+ AL + A++ P + LA + G + A++
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE---- 60
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA-----------QGEIWLAIHHFEKAVSL 693
+ P + + L + A +G + A+ + A +
Sbjct: 61 -------NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
+P + ++ G V D+A
Sbjct: 114 NPRYAPLHLQRGLVYALLGERDKA 137
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 23/190 (12%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y G Y++A + ++ + L L+ + ++ + + + P
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 79 YSNLGNVYKE-----------RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
Y L Y +G L++AL + A R+ P + ++ G+ +
Sbjct: 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+A + AL +RS L L ++GRLDEA Y +R +
Sbjct: 136 KAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194
Query: 177 LKALGRLDEA 186
L G+ +EA
Sbjct: 195 LLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + NP A + G VY G+ +A + + A+ L+ + LA ++ G ++
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMGRLD 168
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ Y KA+E P +G+ A +
Sbjct: 169 EALA-----------QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LG A G A+ FE+A+ +P +A L + + + A
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA 58
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 2e-47
Identities = 59/277 (21%), Positives = 91/277 (32%), Gaps = 61/277 (22%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
Q L + A++Q+P EA+ LG E Q A+ R + LKPD
Sbjct: 73 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD---------LYCVRSDLGNLLKALG--- 158
+ LA + QA + L+Y P + LG + LG
Sbjct: 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192
Query: 159 ---RLDEAKDLY-------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202
E K+L+ V+ LG L G D+A
Sbjct: 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV--------------- 237
Query: 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262
F+ A+ P ++ LG Q +EA+ YR A+
Sbjct: 238 -----------------DCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
Query: 263 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
L+P +I NL + + G +AV+ ++ AL
Sbjct: 280 LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 4e-39
Identities = 56/290 (19%), Positives = 90/290 (31%), Gaps = 77/290 (26%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71
E R Q GD +A A++Q
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEA----------------------------------AVQQ 93
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
+P EA+ LG E Q A+ R + LKPD + LA + QA +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
L+Y P +L+ L + LG+LL E K L
Sbjct: 154 ILRDWLRYTPAYA-------HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFL 205
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQ 249
A++ +P + + LG ++ G+
Sbjct: 206 A---------------------------------AVRLDPTSIDPDVQCGLGVLFNLSGE 232
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+A++ + A+ ++P+ + L A L E+AV AY AL+ P
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 41/185 (22%), Positives = 59/185 (31%), Gaps = 40/185 (21%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L + A++Q+P EA+ LG E Q A+ R + LKPD + L
Sbjct: 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138
Query: 626 AAALVAAGDMEQAVQAYVTALQYNP----------------------------------- 650
A + QA + L+Y P
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198
Query: 651 ---SCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLG 705
+L A+ P LG +FN GE A+ F A+S+ PN + LG
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258
Query: 706 NVLKE 710
L
Sbjct: 259 ATLAN 263
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-33
Identities = 40/232 (17%), Positives = 63/232 (27%), Gaps = 44/232 (18%)
Query: 71 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+NPL G + G L A+ + AV+ P ++ + L A
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+ A L+ PD L +A ++ L
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL---------RDWL--------- 159
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
P Y L + LG++ +
Sbjct: 160 ---RYTP-----------AY--------AHLVTPAEEGAGGAGLGPSKRILGSLLSD-SL 196
Query: 250 LQEALENYRHAVRLKPDFID--GYINLAAALVAAGDMEQAVQAYVTALQYNP 299
E E + AVRL P ID L +G+ ++AV + AL P
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 577 AIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A++ +P + + LG ++ G+ +A++ + A+ ++P+ + L A L
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
E+AV Y +A+E +P + + NLG G A+ HF +A+++
Sbjct: 267 SEEAVA-----------AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315
Query: 695 PNFLDAYINLGNVLKEA 711
G + +
Sbjct: 316 RKSRGPRGEGGAMSENI 332
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 28/158 (17%)
Query: 577 AIKQNPLLAEAYS---------NLGNVYKERGQL------QEALENYRHAVRLKPDFID- 620
++ P A + LG + G L E E + AVRL P ID
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217
Query: 621 -GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
L +G+ ++AV C+ A+ RP+ + W+ LG +
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVD-----------CFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ + +A+ L P ++ + NLG A
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-25
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 12/142 (8%)
Query: 580 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+NPL G + G L A+ + AV+ P ++ + L A
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ + +E +PD A L F + A + P +
Sbjct: 118 IS-----------ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166
Query: 699 DAYINLGNVLKEARIFDRANTL 720
A + L
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRIL 188
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 2/136 (1%)
Query: 565 RKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623
+ DK+ F+ A+ P ++ LG Q +EA+ YR A+ L+P +I
Sbjct: 231 GEYDKAVDCFTA-ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
NL + + G +AV+ ++ AL E WS L + G+
Sbjct: 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 684 IHHFEKAVSLDPNFLD 699
+ +S
Sbjct: 350 GAADARDLSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 7e-21
Identities = 22/157 (14%), Positives = 41/157 (26%), Gaps = 27/157 (17%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQL------------QEALENYRHAVRLKPD----FID 620
A + + L +E + Y + + +
Sbjct: 6 AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ GD+ AV + A++ P AW LG +
Sbjct: 66 QPFEEGLRRLQEGDLPNAVL-----------LFEAAVQQDPKHMEAWQYLGTTQAENEQE 114
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LAI + + L P+ A + L + +A
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 18/99 (18%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQL------------QEALENYRHAVRLKPD----FID 269
A + + L +E + Y + + +
Sbjct: 6 AKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP 65
Query: 270 GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
+ GD+ AV + A+Q +P K + W
Sbjct: 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQ 102
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 14/239 (5%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
+ A+ G +Y G A ++ A+ ++PD + + L L AG+
Sbjct: 34 SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGN 175
+ A +A+ + L+ +P + G L GR A+D L
Sbjct: 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL 153
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG--RKPTTLESA-HFSTLAIKQNPL 232
+ L + L K + IV Y G + T +E +T
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
L+E LG Y G L A ++ AV + L G + +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 6e-34
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 11/135 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ A+ G +Y G A ++ A+ ++PD + + L L AG+
Sbjct: 34 SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ A +A + +E P + A N G G LA DP
Sbjct: 94 DAAYEA-----------FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 696 NFLDAYINLGNVLKE 710
N + L ++
Sbjct: 143 NDPFRSLWLYLAEQK 157
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 27/171 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ P + E ++ LG + G A E + + L P + ++N AL G +
Sbjct: 69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128
Query: 637 QAVQAYVTALQYNP--------------------------SCYLKAIETRPDFAVAWSNL 670
A + Q +P + K+ + + + + L
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
G + + Q + SL + + LG D A LF
Sbjct: 189 GNI-SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 27/167 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ +P A+ N G G+ + A ++ + P+ + L A D +
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE-QKLDEK 161
Query: 637 QAVQAYVTALQYNPS--------------------------CYLKAIETRPDFAVAWSNL 670
QA + + + + L
Sbjct: 162 QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G + + G++ A F+ AV+ + + + L
Sbjct: 222 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 30/249 (12%), Positives = 60/249 (24%), Gaps = 51/249 (20%)
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 124
S + +++ +LA L ++ L + + + G
Sbjct: 1 SNTSWRKSEVLAVP---LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG 57
Query: 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDL 173
A + AL PD+ V + LG L G D A + + +
Sbjct: 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
G L GR A++ + +P
Sbjct: 118 GIALYYGGRDKLAQDDLLA---------------------------------FYQDDPND 144
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA---AALVAAGDMEQAVQA 290
L ++ + ++A E + G+ + + ME+
Sbjct: 145 PFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203
Query: 291 YVTALQYNP 299
Sbjct: 204 ATDNTSLAE 212
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 48/205 (23%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 125
++ +P A+ N G G+ + A ++ + P+ + L A +
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162
Query: 126 -MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDL 173
E Q + + + V LGN+ ++ K L
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNI-SEQTLMERLKADATDNTSLAEHLSETNFYL 221
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
G +LG LD A A F LA+ N
Sbjct: 222 GKYYLSLGDLDSAT--------------------------------ALF-KLAVANNVHN 248
Query: 234 AEAYSNLGNVYKERGQLQEALENYR 258
+ GQ Q+ L
Sbjct: 249 FVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 14/144 (9%)
Query: 574 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
S + +++ +LA L ++ L + + + G
Sbjct: 1 SNTSWRKSEVLAVP---LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG 57
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A + +A+ RPD ++ LG G A F+ + L
Sbjct: 58 LRALARN-----------DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
DP + A++N G L A
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLA 130
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 8e-19
Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 12/114 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ K+ LGN+ E+ ++ + L + L ++ GD+
Sbjct: 173 KSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689
+ A + + A+ V + G+ + ++
Sbjct: 232 DSAT-----------ALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 5/127 (3%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L + +L ++ + + E+ + W V L +I Q +++ +T
Sbjct: 151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQW----GWNIVEFYLGNISEQ-TLMERLKADAT 205
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L+E LG Y G L A ++ AV + L G
Sbjct: 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 265
Query: 127 EQAVQAY 133
+ +
Sbjct: 266 QDDLAES 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 13/77 (16%), Positives = 23/77 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+++ +T L+E LG Y G L A ++ AV +
Sbjct: 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 255
Query: 626 AAALVAAGDMEQAVQAY 642
L G + +
Sbjct: 256 LLELSLLGQDQDDLAES 272
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 100
LD + LA+ N + GQ Q+ L
Sbjct: 230 DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 609
LD + LA+ N + GQ Q+ L
Sbjct: 230 DLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-45
Identities = 45/232 (19%), Positives = 81/232 (34%), Gaps = 23/232 (9%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC----VRSDLGNLLKALGRLDEAKNLHT 191
+ D R G+LL G+LDEA+D + +A +L +A +
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122
Query: 192 ENIKPVTM----KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ + AI ++ AE + +
Sbjct: 123 LRSQALDAFDGADYTAAITF---------------LDKILEVCVWDAELRELRAECFIKE 167
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 2e-39
Identities = 43/313 (13%), Positives = 99/313 (31%), Gaps = 70/313 (22%)
Query: 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIH------------- 52
Q G LL+ G + AE ++ + + S +
Sbjct: 76 QRGHLLLKQ-------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL 128
Query: 53 --FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F + F ++ AE + + G+ ++A+ + + A +LK D
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ + ++ GD E ++ L+ + D + + K ++
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-------- 240
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230
L GR +A + + +K
Sbjct: 241 ---AEELIRDGRYTDATSKYES---------------------------------VMKTE 264
Query: 231 PLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
P +AE + + + + + + EA+ ++++PD ++ + A A + ++
Sbjct: 265 PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Query: 287 AVQAYVTALQYNP 299
A+Q Y A ++N
Sbjct: 325 AIQDYEAAQEHNE 337
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 28/227 (12%), Positives = 70/227 (30%), Gaps = 42/227 (18%)
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYS 589
P+ A + + ++ F+ + F ++ AE
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQAL---DAFDGADYTAAITFLDKILEVCVWDAELRE 158
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+ + G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 218
Query: 650 P-----------------------------------SCYLKAIETRPDFAV----AWSNL 670
S Y ++T P A + +
Sbjct: 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
F+ + AI + + ++P+ ++A + ++D A
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 325
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 11/125 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
E + LG GQL +AL + AV PD Y A +A G + A+
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALP---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
K I + DF A G + QG++ A F+K + +P+ +
Sbjct: 59 -------DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111
Query: 705 GNVLK 709
++K
Sbjct: 112 SQLVK 116
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 4/145 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ +P AY V+ G+ + AL + + LK DF + L+ G ++
Sbjct: 29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88
Query: 637 QAVQAYVTALQYNPSC----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+A + L+ NPS ++ + D + + AI +K +
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 693 LDPNFLDAYINLGNVLKEARIFDRA 717
+ + + +A
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKA 173
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 26/160 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYK---------------ERGQLQEALENYRHAVRLKPDFIDG 621
+K NP E + K + A+ + + +
Sbjct: 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL 156
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
A + G+ +A+ S A + + D A+ + ++ G+
Sbjct: 157 RELRAECFIKEGEPRKAI-----------SDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L++ + + LD + + + V K ++ + A L
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 5e-22
Identities = 15/150 (10%), Positives = 39/150 (26%), Gaps = 27/150 (18%)
Query: 577 AIKQNPLLAEAYSNL------------GNVYKERGQLQEALENYRHAVRLKPDFID---- 620
+K + +++ G+ +A Y ++ +P +
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ +A++ + ++ PD A + + +
Sbjct: 274 SKERICHCFSKDEKPVEAIR-----------ICSEVLQMEPDNVNALKDRAEAYLIEEMY 322
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
AI +E A + N L +
Sbjct: 323 DEAIQDYEAAQEHNENDQQIREGLEKAQRL 352
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 24/160 (15%), Positives = 61/160 (38%), Gaps = 16/160 (10%)
Query: 19 YQAGDYESAERHCMQ------------LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
YQ GD+E + + ++ L+ + + + +
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258
Query: 67 LAIKQNPLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122
+K P +AE + + + + + + EA+ ++++PD ++ + A A +
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162
++A+Q Y A ++N + +R L + L + +
Sbjct: 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 29/251 (11%), Positives = 63/251 (25%), Gaps = 74/251 (29%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHFSTLAIKQNPLLAE 77
+ G+ A + +++NT +S++++Q + S + +K +
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE-CLKLDQDHKR 223
Query: 78 AYSNL------------GNVYKERGQLQEALENYRHAVRLKPDFID----GYINLAAALV 121
+++ G+ +A Y ++ +P + +
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283
Query: 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181
+A++ LQ PD AL D
Sbjct: 284 KDEKPVEAIRICSEVLQMEPDNV----------NAL-------------KDRAEAYLIEE 320
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241
DEA + +Y A + N + L
Sbjct: 321 MYDEA-------------------IQDY--------------EAAQEHNENDQQIREGLE 347
Query: 242 NVYKERGQLQE 252
+ Q Q+
Sbjct: 348 KAQRLLKQSQK 358
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 4e-16
Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 577 AIKQNPLLAE----AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632
+K P +AE + + + + + + EA+ ++++PD ++ + A A +
Sbjct: 260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
++A+Q Y A E + L
Sbjct: 320 EMYDEAIQ-----------DYEAAQEHNENDQQIREGLEKAQRLLK 354
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-45
Identities = 49/257 (19%), Positives = 82/257 (31%), Gaps = 48/257 (18%)
Query: 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGY 113
+ S H + P + S G E G ++A E + A+ + Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRS 171
IN A L + ++E+A+ Y AL+ + GN+ EAKD++ +R+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 172 D---------LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222
LG +L L + A ++
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALP-------------------YL--QR--------- 150
Query: 223 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
A++ N EA G G L EAL + P D + N
Sbjct: 151 ---AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKE 207
Query: 283 DMEQAVQAYVTALQYNP 299
+ E+A++ A+ P
Sbjct: 208 NREKALEMLDKAIDIQP 224
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 3e-39
Identities = 47/270 (17%), Positives = 85/270 (31%), Gaps = 56/270 (20%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
R + GDYE A + + + + +++ +L+++ F A++ +
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A AY GNVY + +EA + + A+R + D + L LV + A+
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193
A++ N + R G L G LDEA +
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQF---------AAVT------------E 187
Query: 194 IKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 253
P + A+A+ N G Y + ++A
Sbjct: 188 QDP-----------GH------------------------ADAFYNAGVTYAYKENREKA 212
Query: 254 LENYRHAVRLKPDFIDGYINLAAALVAAGD 283
LE A+ ++PD +
Sbjct: 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 7e-37
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ + A AY GNVY + +EA + + A+R + D + L LV +
Sbjct: 83 ALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK 142
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ +A+E + A G +G + A+ F DP
Sbjct: 143 LALP-----------YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 697 FLDAYINLGNVLKEARIFDRA 717
DA+ N G ++A
Sbjct: 192 HADAFYNAGVTYAYKENREKA 212
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-36
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
E +K+A T AI++N A Y N N+ +L+ AL Y A+ L
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
Y V ++A + KA+ + + LG V +
Sbjct: 94 YYGAGNVYVVKEMYKEAKD-----------MFEKALRAGMENGDLFYMLGTVLVKLEQPK 142
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LA+ + ++AV L+ N +A G L + D A
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-36
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ + + LG V + Q + AL + AV L + + L G ++
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ + E P A A+ N G + + A+ +KA+ + P+
Sbjct: 177 EALS-----------QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 697 FLDAYINLGNVLKE 710
+ A +
Sbjct: 226 HMLALHAKKLLGHH 239
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 15/155 (9%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGY 622
+ S H + P + S G E G ++A E + A+ + Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
IN A L + ++E+A+ Y KA+E A A+ G V+ +
Sbjct: 61 INFANLLSSVNELERALA-----------FYDKALELDSSAATAYYGAGNVYVVKEMYKE 109
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A FEKA+ D + LG VL + A
Sbjct: 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ N EA G G L EAL + P D + N + E
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+A++ KAI+ +PD +A + +
Sbjct: 211 KALE-----------MLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 2e-44
Identities = 36/245 (14%), Positives = 71/245 (28%), Gaps = 46/245 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
K +AY LG Y +RG ++A R A+ + P D + LA + +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------CVRSD-------LG 174
A + Y AL + V ++ G L R +EA + + LG
Sbjct: 89 LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ + + +AK +F +++ N
Sbjct: 149 LVSLQMKKPAQAK--------------------------------EYFEK-SLRLNRNQP 175
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
+ ++ + + A + Y + + D + A +
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
Query: 295 LQYNP 299
+ P
Sbjct: 236 KRLYP 240
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 6e-35
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P A+A++ L V++ + + A E YR A+ N L E
Sbjct: 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A Q + A P+ + + NLG V + A +FEK++ L+ N
Sbjct: 123 EAYQRLLEAS---------QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + ++L + R + A
Sbjct: 174 QPSVALEMADLLYKEREYVPA 194
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
K +AY LG Y +RG ++A R A+ + P D + LA + +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPK 88
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--SLD 694
A + Y KA+ + A +N G Q A +A +L
Sbjct: 89 LADE-----------EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY 137
Query: 695 PNFLDAYINLGNVLKEARIFDRA 717
P + NLG V + + +A
Sbjct: 138 PERSRVFENLGLVSLQMKKPAQA 160
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 13/147 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGD 634
A+ + A +N G E+ + +EA + A + L P+ + NL +
Sbjct: 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
QA + + K++ + + + + E A +++
Sbjct: 157 PAQAKEYF-----------EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG 205
Query: 695 PNFLDAYINLGNVLKEARIFDRANTLF 721
+ + + K D A +
Sbjct: 206 GQNARSLLLGIRLAKVFEDRDTAASYG 232
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 67/267 (25%)
Query: 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHF 64
QLG+G L+ G+ E A+ + + ++ L+ + + + +
Sbjct: 42 QLGLGYLQR-------GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVA 122
A+ + A +N G E+ + +EA + A + L P+ + NL +
Sbjct: 95 RK-ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
QA + + +L+ N + ++ +LL
Sbjct: 154 MKKPAQAKEYFEKSLRLNRNQP----------SVA-------------LEMADLLYKERE 190
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
A+ + + A +
Sbjct: 191 YVPARQYYDL---------------------------------FAQGGGQNARSLLLGIR 217
Query: 243 VYKERGQLQEALENYRHAVRLKPDFID 269
+ K A RL P ++
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 14/137 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + G V + +N + + + D YI L + G+ EQA
Sbjct: 6 HHHHHSSGLVPRGSHM---GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKV---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
KA+E P A A + L VF + E LA + KA++ D N
Sbjct: 59 -------PLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
Query: 705 GNVLKEARIFDRANTLF 721
G L E + ++ A
Sbjct: 112 GGFLYEQKRYEEAYQRL 128
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
P + + NLG V + + +A E + ++RL + + +A L +
Sbjct: 132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A Q Y + A + + + A + + L P
Sbjct: 192 VPARQ-----------YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240
Query: 696 NFLDA 700
L+
Sbjct: 241 GSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 34/159 (21%)
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAK-DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197
++ V + + D+ + + LG G ++AK ++
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK----VPLR-- 61
Query: 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257
A++ +P A+A++ L V++ + + A E Y
Sbjct: 62 ---------------------------KALEIDPSSADAHAALAVVFQTEMEPKLADEEY 94
Query: 258 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
R A+ N L E+A Q + A Q
Sbjct: 95 RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 8/59 (13%), Positives = 18/59 (30%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
++ R+ + + L + A + + K A RL P ++
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 5e-44
Identities = 71/494 (14%), Positives = 155/494 (31%), Gaps = 68/494 (13%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVV 59
Query: 289 QAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRPVLGLASAIESISA 347
+ AL+ P D+ K L RR A + + A A+ +S
Sbjct: 60 EMSTKALELKP---------------DYS--KVLLRRASANEGLGK----FADAMFDLSV 98
Query: 348 NQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVE-PNGKILIPHIYKDVEP 406
+++ + + L +AM+ L G + +
Sbjct: 99 ------LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152
Query: 407 LGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGG 466
+ F+ + ++++ + +L E
Sbjct: 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN-GLSNLYKRSPESYDKADES 211
Query: 467 KTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTN 526
T K F ++ N + +++ + L + N D K+
Sbjct: 212 FT----KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Query: 527 PEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE 586
P +Y+ A + + ++ A+K + +
Sbjct: 268 PRVNSYIY--MALIM--------------------ADRNDSTEYYNYFDKALKLDSNNSS 305
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
Y + G + +A +++ A L P+ I YI LA +
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET------ 359
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
+ +A P+ + + + + A+ ++ A+ L+ Y+ +
Sbjct: 360 -----LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 707 VLKEARIFDRANTL 720
++ +A + R T+
Sbjct: 415 LVGKATLLTRNPTV 428
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 1e-36
Identities = 38/298 (12%), Positives = 80/298 (26%), Gaps = 54/298 (18%)
Query: 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81
+E + + + L F + AI+ P +Y
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY 275
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141
+ + +R E + A++L + Y + + +QA + + A + +P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 142 DLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKNLH 190
+ L L + D+ + L+ V + +L D+A +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER--- 247
AI+ L Y + + +
Sbjct: 396 DL---------------------------------AIELENKLDGIYVGIAPLVGKATLL 422
Query: 248 ------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA A +L P I LA + D+++A+ + +
Sbjct: 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-36
Identities = 37/273 (13%), Positives = 84/273 (30%), Gaps = 16/273 (5%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ D A + + ++ I + ++ A+K + +
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
Y + G + +A +++ A L P+ I YI LA + + A +
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR 366
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198
P+ V + +L D+A Y A+ ++ ++ I P+
Sbjct: 367 KFPEAPEVPNFFAEILTDKNDFDKALKQY---------DLAIELENKLDGIYV-GIAPLV 416
Query: 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 258
K A K +P +A L + ++ + EA+ +
Sbjct: 417 GKATLLTRNPTVENFIEATNLL---EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
Query: 259 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
+ L + + A ++Q +++
Sbjct: 474 ESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-29
Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 21/262 (8%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F+ +K D + + A++ YSNL Y G L++ +E A+ LKPD+
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ A+A G A+ + L N D + ++ L R + + ++
Sbjct: 74 KVLLRRASANEGLGKFADAMFDL-SVLSLNGDF-----NDASIEPMLERNLNKQAMSKLK 127
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNA-IVCNYGGRKPTTLESAHFSTLAIKQ 229
G++ A E + K + + + ++ G L A++ + +
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE-SNEA 186
Query: 230 NPLLAEAYSNLGNVY------------KERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ L SNL K +E L+ +LK +
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
D A + A++ P
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFP 268
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 7e-29
Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 12/297 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L + ++ ++ Y+ A ++ + + LS+ + L K ST A++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDM 126
P ++ + + G+ +A+ + + L DF I+ + A +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLS-VLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 127 EQAVQAYVTALQYNPDL----YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
++ TA +L R D L ++ + ++ N ++
Sbjct: 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEA 186
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
E N + K A + + + K LA + + G
Sbjct: 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE-DEKLKEKLAISLEHTGI 245
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ A E+ + A+ L P + YI +A + D + + AL+ +
Sbjct: 246 FKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDS 301
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-26
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 12/157 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
R ++ + K LA + + G + A E+ + A+ L P + YI
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIY 275
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
+A + D + + KA++ + + + + G + A
Sbjct: 276 MALIMADRNDSTEYYN-----------YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
F+KA LDP + YI L + FD TLF
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-26
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A ++ P E + + ++ +AL+ Y A+ L+ Y+ +A + A +
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423
Query: 637 Q--AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694
+ V+ ++ A KA + P A L + Q +I AI FE++ L
Sbjct: 424 RNPTVENFIEATN----LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479
Query: 695 PNFLDAYINLGNVLKEARIFDRA 717
+ + EA +
Sbjct: 480 RTMEEKLQAIT--FAEAAKVQQR 500
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + +P Y L + + + + A R P+ + A L D +
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN---------AQGEIWLAIHHF 687
+A++ Y AIE + + + A +
Sbjct: 390 KALK-----------QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
EKA LDP A I L + + D A TLF
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 9e-25
Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 12/240 (5%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ A A + GN + + +A++ Y A+ LK D + Y NL+A V+ GD+++ V
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVV 59
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ AL+ PD V + + LG+ +A V S G+ A +NL+
Sbjct: 60 EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
+ + K++ T S + + L + +
Sbjct: 120 KQAMS----KLKEKFGDIDTATATPTELSTQPAKERKDKQENL--PSVTSMASFFGIFKP 173
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALV-----AAGDMEQAVQAYVTALQYNPLLKKED 305
+ NY + + ++G NL A +A + + L N +K
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-24
Identities = 29/277 (10%), Positives = 62/277 (22%), Gaps = 57/277 (20%)
Query: 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113
+++ + + + NY + + ++G
Sbjct: 135 TATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194
Query: 114 INLAAALV------------AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
NL AA E+ + + L G
Sbjct: 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254
Query: 162 EAKDLY----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211
A + + ++ E N +
Sbjct: 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK------------------- 295
Query: 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 271
A+K + + Y + G + +A +++ A L P+ I Y
Sbjct: 296 --------------ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
I LA + + A + P + + N
Sbjct: 342 IQLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPN 376
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 4e-20
Identities = 35/227 (15%), Positives = 72/227 (31%), Gaps = 9/227 (3%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F +K D + + A++ YSNL Y G L++ +E A+ LKPD+
Sbjct: 17 FRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV 75
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ A+A G A+ + L N + A ++
Sbjct: 76 LLRRASANEGLGKFADAMFDL-SVLSLNG-------DFNDASIEPMLERNLNKQAMSKLK 127
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERC 741
+ A + +E + F+ +T + D E
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 742 EAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVP 788
+ L+ +++ ES + +++ + + E +K+
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-43
Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 56/231 (24%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
+ + + Y + G + + G+ +A+ +D ++L A V G +++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ +L PD V + LG + + D A L +K
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL---------IKVA-------- 103
Query: 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG 248
P LG G
Sbjct: 104 ----EANP-----------IN------------------------FNVRFRLGVALDNLG 124
Query: 249 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ EA+++++ A+ L+P+ + +A + G E+A+ + A + +
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + +LG Y + G + E ++ PD + L V +
Sbjct: 34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD 93
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
AV +K E P LG + G AI F+ A+ L PN
Sbjct: 94 LAVP-----------LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ + ++ + A
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 9e-38
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 65/239 (27%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
+ G+ + + ++ + + +LG Y + G + E
Sbjct: 12 RDKGISH------AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
++ PD + L V + AV + + NP + VR LG L LGR
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Query: 160 LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLES 219
DEA D + AL ++P N
Sbjct: 126 FDEAIDSF---------KIAL------------GLRP-----------NE---------- 143
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
+ + + Y++ G+ +EAL +++ A L + LA
Sbjct: 144 --------------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA---SVELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 5e-36
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
+ + + Y + G + + G+ +A+ +D ++L A V G +++
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
+ +++ PD + LG + + LA+ K +P
Sbjct: 61 GTE-----------LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Query: 698 LDAYINLGNVLKEARIFDRA 717
+ LG L FD A
Sbjct: 110 FNVRFRLGVALDNLGRFDEA 129
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 4e-35
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 14/133 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ P + + LG Y + + A+ P + L AL G +
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFD 127
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A+ + A+ RP+ + + G A+ HF+KA LD
Sbjct: 128 EAID-----------SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 697 FLDAYINLGNVLK 709
+ L V +
Sbjct: 177 A---SVELALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 5e-21
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ NP+ LG G+ EA+++++ A+ L+P+ + +A + G E
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLK 155
+A+ + A + + +L + +
Sbjct: 162 EALPHFKKANELDEGAS---VELALVPR 186
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 5e-42
Identities = 51/233 (21%), Positives = 88/233 (37%), Gaps = 11/233 (4%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
Q+ E + LG GQL +AL + AV PD Y A +A G +
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
A+ +Q D R G+LL G+LDEA D +LK+ +E K
Sbjct: 79 ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA------EDDFKKVLKSNPSENEEKE 132
Query: 189 LHTENIKPVTMK--VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246
++ IK M+ A+ G + ++ AE + +
Sbjct: 133 AQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL---DKILEVCVWDAELRELRAECFIK 189
Query: 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
G+ ++A+ + + A +LK D + + ++ GD E ++ L+ +
Sbjct: 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-34
Identities = 41/302 (13%), Positives = 97/302 (32%), Gaps = 33/302 (10%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
G ++A ++ + + + T L + + KLD++ +K NP E
Sbjct: 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 79 YS---------------NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
+ G A+ + + + A +
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSDLGNLLKALG 181
G+ +A+ A + D + L LG + + C++ D +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH------ 244
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP----LLAEAY 237
+ + +K + +++A GR +K P +
Sbjct: 245 --KRCFAHY-KQVKKLNKLIESAEELIRDGRYTDATSKY---ESVMKTEPSIAEYTVRSK 298
Query: 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
+ + + + + EA+ ++++PD ++ + A A + ++A+Q Y TA ++
Sbjct: 299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358
Query: 298 NP 299
N
Sbjct: 359 NE 360
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-33
Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 9/299 (3%)
Query: 4 IAQLGIGLLELAHREYQAG---DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK 60
L G L+ A +++ + E Q +++ L + F
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161
Query: 61 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
+ F ++ AE + + G+ ++A+ + + A +LK D + + ++
Sbjct: 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
GD E ++ L+ + D + + K ++ A++L G A
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI----RDGRYTDAT 277
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
+ + + + C KP E+ + ++ P A +
Sbjct: 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV--EAIRVCSEVLQMEPDNVNALKDR 335
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y EA+++Y A + L A ++ + ++ N
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
Q+ E + LG GQL +AL + AV PD Y A +A G +
Sbjct: 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA 78
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A+ K I+ + DF A G + QG++ A F+K + +P+
Sbjct: 79 ALP-----------DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127
Query: 698 LDAYINLGNVLKEARIFDRAN 718
+ ++K + +
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRS 148
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 39/195 (20%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + F ++ AE + + G+ ++A+ + + A +LK D +
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP------------------------------- 650
+ ++ GD E ++ L+ +
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273
Query: 651 ----SCYLKAIETRPDFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702
S Y ++T P A + + F+ + AI + + ++P+ ++A
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 703 NLGNVLKEARIFDRA 717
+ ++D A
Sbjct: 334 DRAEAYLIEEMYDEA 348
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-26
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 4/147 (2%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A+ +P AY V+ G+ + AL + ++LK DF + L+ G
Sbjct: 50 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109
Query: 635 MEQAVQAYVTALQYNPSC----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+++A + L+ NPS ++ + D + G+ AI +K
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 691 VSLDPNFLDAYINLGNVLKEARIFDRA 717
+ + + + +A
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKA 196
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 4e-23
Identities = 17/154 (11%), Positives = 47/154 (30%), Gaps = 11/154 (7%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
++ + + + G A+ + + + A
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
+ G+ +A+ S A + + D A+ + ++ G+ L++
Sbjct: 186 CFIKEGEPRKAI-----------SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+ + LD + + + V K ++ + A L
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 45/332 (13%), Positives = 85/332 (25%), Gaps = 78/332 (23%)
Query: 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHF 64
+ L A + +GDY +A ++ + + L + + + K+
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 65 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------------IDG 112
A K EA+ + +Y + G + +L R ++L D ++
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL----GNLLKALGRLDEAKDLYC 168
I A L+ G A Y + ++ P + + + EA +
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 169 -----------VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
D DEA +
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET------------------------- 354
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ-----------------LQEALENYRH- 259
A + N + L + Q QE ++ YR
Sbjct: 355 --------AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406
Query: 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A++ PD A D+ A +
Sbjct: 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 1e-18
Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 530 PNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP----LLA 585
++ K V + + + + +K P
Sbjct: 242 QDHKRCFAHYKQVKKLNKLIES------AEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295
Query: 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 645
+ + + + + + EA+ ++++PD ++ + A A + ++A+Q
Sbjct: 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ----- 350
Query: 646 LQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD---AYI 702
Y A E + L + ++ V + + AY
Sbjct: 351 ------DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYR 404
Query: 703 NLG 705
L
Sbjct: 405 KLA 407
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 5e-18
Identities = 17/158 (10%), Positives = 44/158 (27%), Gaps = 27/158 (17%)
Query: 577 AIKQNPLLAEAYSNLGNVYK------------ERGQLQEALENYRHAVRLKPDFID---- 620
+K + +++ V K G+ +A Y ++ +P +
Sbjct: 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
+ +A++ + ++ PD A + + +
Sbjct: 297 SKERICHCFSKDEKPVEAIR-----------VCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
AI +E A + N L + + + +
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 7/122 (5%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
K ++ + ++ P A + Y EA+++Y A + L
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPS------CYLK-AIETRPDFAVAWSNLGCVFNAQG 678
A ++ + ++ N Y K A++ PD
Sbjct: 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI 429
Query: 679 EI 680
+I
Sbjct: 430 DI 431
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 22/100 (22%)
Query: 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ 677
+ + L Q++ LG A
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVE----------------------KHLELGKKLLAA 39
Query: 678 GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G++ A+ F AV DP+ AY V A
Sbjct: 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
|
| >1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Length = 304 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 5e-42
Identities = 93/107 (86%), Positives = 100/107 (93%)
Query: 797 KRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRK 856
ERKANYAVDAYF+EALR SEPKAPKAPRPPKQPIVQDFQFFPPRLFE+LDQEIYYFRK
Sbjct: 2 AMERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRK 61
Query: 857 TVGYKVPKNPELGSDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
TVGYKVPKN ELGSDATK Q+EEQ+KIDE+EPLTEEE+ EKE LL+Q
Sbjct: 62 TVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 108
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-41
Identities = 47/251 (18%), Positives = 87/251 (34%), Gaps = 48/251 (19%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L + F AI Q+P AEA+ LG E Q A+ + + L+P+ +
Sbjct: 74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170
+ LA + + A +A ++ NP + + R+ ++
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS------- 186
Query: 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230
L+ K L+ E A QN
Sbjct: 187 ------PVDSSVLEGVKELYLE---------------------------------AAHQN 207
Query: 231 P--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ + + LG ++ G+ A++ + A+ ++P+ + L A L E+AV
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 289 QAYVTALQYNP 299
+AY AL+ P
Sbjct: 268 EAYTRALEIQP 278
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-30
Identities = 15/142 (10%), Positives = 35/142 (24%), Gaps = 11/142 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ G + G L + A+ P + + L +
Sbjct: 56 FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ A+ + +E +P+ A L + A + + +P
Sbjct: 116 QAAIV-----------ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
+ N R ++
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKS 186
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 23/164 (14%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
L + F AI Q+P AEA+ LG E Q A+ + + L+P+ + + L
Sbjct: 80 DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A + + A + I+ P + N + +
Sbjct: 140 AVSYTNTSHQQDACE-----------ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188
Query: 686 H----------FEKAVSLDPNFLDA--YINLGNVLKEARIFDRA 717
+ +A + + +D LG + + F+RA
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRA 232
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 23/153 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEAL----------ENYRHAVRLKPDFID--GYIN 624
IKQNP N ++ ++ E Y A D ID
Sbjct: 159 WIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
L +G+ +A+ + A+ RP+ W+ LG A+
Sbjct: 219 LGVLFHLSGEFNRAID-----------AFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ +A+ + P F+ + NLG + A
Sbjct: 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 6e-28
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + + + LG ++ G+ A++ + A+ ++P+ + L A L
Sbjct: 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+AV+ Y +A+E +P F + NLG G A+ +F A+SL
Sbjct: 264 EEAVE-----------AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312
Query: 696 NFLDAYINLGNVLKE 710
+ +
Sbjct: 313 KSRNQQQVPHPAISG 327
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 5e-25
Identities = 26/259 (10%), Positives = 54/259 (20%), Gaps = 74/259 (28%)
Query: 68 AIKQNPLLAEAYSNLGN--------VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
+ + + + + + + + + Y G
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK 74
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
+ GD+ + A+ +P LG A +
Sbjct: 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL---------QRC 125
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
L ++P N +A
Sbjct: 126 L------------ELQP-----------NN------------------------LKALMA 138
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM----------EQAVQ 289
L Y Q+A E ++ ++ P + N + M E +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198
Query: 290 AYVTALQYNPLLKKEDGWN 308
Y+ A N + D
Sbjct: 199 LYLEAAHQNGDMIDPDLQT 217
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 3e-22
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+ +++ A+ P ++ LG + +EA+E Y A+ ++P FI N
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA--VAWSNLGCVFNAQGEIWL 682
L + + G +AV ++TAL + W+ L + + L
Sbjct: 287 LGISCINLGAYREAVSNFLTALSLQRK-SRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345
Query: 683 A-------IHHFEKAVSLDP 695
+ +A +LDP
Sbjct: 346 FQAANLGDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 3e-21
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 19/142 (13%)
Query: 577 AIKQNPLLAEAYSNLGN--------VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
+ + + + + + + + + Y G
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK 74
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
+ GD+ + AI P A AW LG AI +
Sbjct: 75 RLKEGDLPVTIL-----------FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 689 KAVSLDPNFLDAYINLGNVLKE 710
+ + L PN L A + L
Sbjct: 124 RCLELQPNNLKALMALAVSYTN 145
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 7e-18
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657
+ + A + +A ++ Q + + Y
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEK----GYYFHT 58
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E G +G++ + I E A+ DP +A+ LG E A
Sbjct: 59 ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 5e-40
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ A P+ + G +AL + + C + G
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 218 KQALETVQRLLPVLCQ---------------------------------AHGLTPQQVVA 244
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L P + + + A +++ + A
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304
Query: 297 YNP 299
P
Sbjct: 305 LTP 307
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 7e-38
Identities = 28/243 (11%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ P A ++ + +Q L A L P + + A ++
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P+ + +AL + + C + G
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 184 KQALETVQRLLPVLCQ---------------------------------AHGLTPQQVVA 210
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L P + + A +++ + A
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 297 YNP 299
P
Sbjct: 271 LTP 273
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 9e-38
Identities = 31/292 (10%), Positives = 66/292 (22%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
+ Q + + + A P A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
++ G + +Q L A L P + + + A +++ + A
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
P + G +AL + + C + +AL +
Sbjct: 305 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 364
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ + A P A ++ G +
Sbjct: 365 PVLCQ---------------------------------AHGLTPEQVVAIASNGGGKQAL 391
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q L A L P+ + + A +++ + A P
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-37
Identities = 30/292 (10%), Positives = 63/292 (21%), Gaps = 44/292 (15%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
++ Q + + + A P A
Sbjct: 151 QALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
++ G + +Q L A L P + + A +++ + A
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 270
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLDEAK 187
P + +AL + + C + G +AL +
Sbjct: 271 LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL- 329
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
A P A ++ +
Sbjct: 330 -------------------------------LPVLCQ-AHGLTPQQVVAIASHDGGKQAL 357
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q L A L P+ + + A +++ + A P
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 3e-37
Identities = 28/243 (11%), Positives = 55/243 (22%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L P + + A ++
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P + +AL + + C + G
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 388 KQALETVQRLLPVLCQ---------------------------------AHGLTPEQVVA 414
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L P + + A + + AL
Sbjct: 415 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALA 474
Query: 297 YNP 299
Sbjct: 475 ALT 477
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 23/164 (14%), Positives = 42/164 (25%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 157
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ A P +A P VA ++ G
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P + A + G + R
Sbjct: 218 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 51/235 (21%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ G + +Q L A L P + + A ++
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A P+ + G +AL + + C +
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + L A P A
Sbjct: 422 KQALETVQRL------------------------------LPV---LCQAHGLTPQQVVA 448
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
++ G + L A+ + + AL G A+ A
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTN------DHLVALACLGG-RPALDAV 496
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 27/248 (10%), Positives = 61/248 (24%), Gaps = 54/248 (21%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA-----VRLKPDFIDGYINLAAALVA 122
++ + + G EA+ +R+A + L P+ + + A
Sbjct: 30 PLQLDTGQLLKIAKRGG-----VTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQA 84
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRS 171
+++ + A P + +AL + + C +
Sbjct: 85 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 144
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
+AL + + + A P
Sbjct: 145 SHDGGKQALETVQALLPVLCQ---------------------------------AHGLTP 171
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A ++ G + +Q L A L P + + A +++ +
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 292 VTALQYNP 299
A P
Sbjct: 232 CQAHGLTP 239
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-28
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ G A + + +A L P
Sbjct: 362 RLLP-----------VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 411 QVVAIASHDGGKQALETVQRL 431
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 8e-28
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 200 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ A + + +A L P
Sbjct: 260 RLLP-----------VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 309 QVVAIASNGGGKQALETVQRL 329
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P+ + + A ++
Sbjct: 336 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQ 395
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ A + + +A L P
Sbjct: 396 RLLP-----------VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G
Sbjct: 445 QVVAIASNGGGRPALESIVAQ 465
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-27
Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L P + + A ++
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ A + + +A L P
Sbjct: 328 RLLP-----------VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 377 QVVAIASNGGGKQALETVQRL 397
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ P A ++ + +Q L A L P + + A ++
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P+ VA ++ A + + +A L P
Sbjct: 124 RLLP-----------VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 173 QVVAIASNGGGKQALETVQRL 193
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 12/131 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P+ + + A ++
Sbjct: 370 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ 429
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A P VA ++ G A I + + A++ N
Sbjct: 430 RLLP-----------VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478
Query: 697 -FLDAYINLGN 706
L A LG
Sbjct: 479 DHLVALACLGG 489
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-21
Identities = 22/235 (9%), Positives = 47/235 (20%), Gaps = 44/235 (18%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ L A E ++L +
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLD 184
L P+ + +AL + + C + +AL +
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 123
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+ + A P A ++
Sbjct: 124 RLLPVLCQ---------------------------------AHGLTPEQVVAIASHDGGK 150
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L A L P+ + + A +++ + A P
Sbjct: 151 QALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 4e-19
Identities = 26/188 (13%), Positives = 46/188 (24%), Gaps = 9/188 (4%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G G L + Q + + +
Sbjct: 313 IASNGGGKQAL-------ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 365
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L P+ + + A
Sbjct: 366 VLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQAL 425
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC--VRSDLGNLLKALG 181
+++ + A P + G AL + + + + L AL
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485
Query: 182 RLDEAKNL 189
L L
Sbjct: 486 CLGGRPAL 493
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 5e-19
Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA-----VRLKPDFIDGYINLAAALVA 631
++ + + G EA+ +R+A + L P+ + + A
Sbjct: 30 PLQLDTGQLLKIAKRGG-----VTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQA 84
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
+++ + +A P VA ++ A + + +A
Sbjct: 85 LETVQRLLP-----------VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L P + A + + +
Sbjct: 134 GLTPEQVVAIASHDGGKQALETVQALLPVL 163
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 7e-15
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 11/137 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ L A E ++L + +AV A+
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVT-----AVEAVHAWRN 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
AL + P+ VA ++ A + + +A L P + A +
Sbjct: 59 AL------TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 112
Query: 705 GNVLKEARIFDRANTLF 721
+ R +
Sbjct: 113 DGGKQALETVQRLLPVL 129
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 6e-40
Identities = 41/237 (17%), Positives = 70/237 (29%), Gaps = 44/237 (18%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
+A+ GN + + Q EA+E+Y A L D N AAA G+ E A+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY----------CVRSDLGNLLKALGR 182
A++ ++ + +G ++L L
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
++ NP AE G
Sbjct: 121 AEKELKKAEA---------------------------------EAYVNPEKAEEARLEGK 147
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y + A++ Y ++ P+ GY N AAAL +A+ A++ +P
Sbjct: 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 9e-34
Identities = 35/278 (12%), Positives = 74/278 (26%), Gaps = 46/278 (16%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y+A ++ A H + W + T L ++ ++ + + + A++Q +
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD 74
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
Y + + G L + + + + + A L + E+ ++
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAY 133
Query: 139 YNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVR---------SDLGNLLKALGRLDEAK 187
NP+ G A Y ++ S+ L L EA
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA- 192
Query: 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247
+ AI+++P AY
Sbjct: 193 -----------------------------IADC---NKAIEKDPNFVRAYIRKATAQIAV 220
Query: 248 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ ALE A + +G + +
Sbjct: 221 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 11/143 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ R +K + NP AE G Y + A++ Y ++ P+ GY
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 176
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
N AAAL +A+ KAIE P+F A+ A E
Sbjct: 177 SNRAAALAKLMSFPEAIA-----------DCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225
Query: 683 AIHHFEKAVSLDPNFLDAYINLG 705
A+ + A + D +
Sbjct: 226 ALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 25/179 (13%)
Query: 562 FECRKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
++ R+ D++ H+ A + + +N E+G+ + A+ AV +
Sbjct: 16 YKARQFDEAIEHY-NKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNP----------------------SCYLKAIE 658
Y ++ + G+ + ++Y
Sbjct: 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
P+ A G + + + A+ + + + P Y N L + F A
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 192
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
I+ + ++ + ++ L+ + P+ + D
Sbjct: 98 TIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
AV+ Y + I+ P+ A +SN AI KA+ DPN
Sbjct: 157 NAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
Query: 697 FLDAYINLGNVLKEARIFDRA 717
F+ AYI + + A
Sbjct: 206 FVRAYIRKATAQIAVKEYASA 226
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 8e-26
Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 13/136 (9%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 641
+A+ GN + + Q EA+E+Y A L D N AAA G+ E A+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIS- 59
Query: 642 YVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
A+E + + + F G + + +K + L +
Sbjct: 60 ----------TLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
Query: 702 INLGNVLKEARIFDRA 717
++L + R ++
Sbjct: 110 -RTADILTKLRNAEKE 124
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 10/60 (16%), Positives = 18/60 (30%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AI+++P AY + ALE A + +G + +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 5e-39
Identities = 36/239 (15%), Positives = 70/239 (29%), Gaps = 55/239 (23%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ ++ + L Y ++A + A++ P ++ A ++A
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+++ AL PD + ++ G L L R E+ + KAL
Sbjct: 63 ESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF---------DKAL--------- 104
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
A P A N G ++GQ
Sbjct: 105 ------------------------------------ADPTYPTPYIANLNKGICSAKQGQ 128
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308
A + ++ +P F + LA + AG + A + +L+ +D
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDM 635
A+K +P A+ +Y+ +A E++R A+ +KPD + N L
Sbjct: 34 ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+++ + AL A T P +A N G QG+ LA + +++++ P
Sbjct: 94 AESMAYFDKAL---------ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
F A+ L A A
Sbjct: 145 QFPPAFKELARTKMLAGQLGDA 166
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-30
Identities = 35/236 (14%), Positives = 64/236 (27%), Gaps = 61/236 (25%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-AGDM 126
A+K +P A+ +Y+ +A E++R A+ +KPD + N L
Sbjct: 34 ALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93
Query: 127 EQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLD 184
+++ + AL P Y + G G+ A+ ++L
Sbjct: 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL---------KRSL---- 140
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+P + A+ L
Sbjct: 141 --------AAQP-----------QF------------------------PPAFKELARTK 157
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
GQL +A ++ + L + A + A AY Q
Sbjct: 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI--AKALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 8e-28
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639
+ ++ + L Y ++A + A++ P ++ A ++A
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVS--LDPN 696
+ + +A+ +PD A +N G + ++ +F+KA++ P
Sbjct: 63 E-----------SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPT 111
Query: 697 FLDAYINLGNVLKEARIFDRA 717
A +N G + F A
Sbjct: 112 PYIANLNKGICSAKQGQFGLA 132
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKER-GQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAG 633
A+ P AE +N G R + E++ + A+ P +N G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A +++ +P F A+ L G++ A ++F+K S
Sbjct: 128 QFGLAEAYL-----------KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176
Query: 694 DPNFLDAYINLGNVLKEARIFDRAN 718
+ LG K A+ A
Sbjct: 177 VEVLQADDLLLG--WKIAKALGNAQ 199
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKS-AHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97
NN G L + + +S A+F LA P A N G ++GQ A
Sbjct: 80 NNYGWFL-----CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134
Query: 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
+ ++ +P F + LA + AG + A + L DL K
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ--ADDLLLGWKIA 192
Query: 158 GRLDEAKDLY 167
L A+ Y
Sbjct: 193 KALGNAQAAY 202
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
LA P A N G ++GQ A + ++ +P F + LA + AG +
Sbjct: 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
A + K LG + + A +E L
Sbjct: 164 GDADY-----------YFKKYQSRVEVLQADDLLLG--WKIAKALGNAQAAYEYEAQLQA 210
Query: 696 NFLDAY 701
NF +
Sbjct: 211 NFPYSE 216
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E + + L + + A E A+ DP A++ + + ++ D+A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 6e-38
Identities = 41/289 (14%), Positives = 79/289 (27%), Gaps = 41/289 (14%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L + + A+ + + L+ + F A+
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLH-PTPNSYIFLALTLADKENSQEFFKFFQKAVD 304
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
NP Y + G +Y + A E+++ A L P+ + YI LA L G ++
Sbjct: 305 LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ P L V + +L G D A Y A
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY---------DIAK---------- 405
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
++ E H + + S+ + +
Sbjct: 406 --RLEE-------------------VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
A++ A L P I LA + +++A++ + +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-37
Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 27/275 (9%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 93
Query: 111 DGYINLAAALVAAGDMEQAVQAY-VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
+ A+A + G+ A+ V +L + D + L L ++L
Sbjct: 94 KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ-----------NAIVCNYGGRKPTTLE 218
+L + L + +++ ++ +A+ Y L
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213
Query: 219 SAHFS--------------TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
+ T+ A A G + + L +A + ++ L
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273
Query: 265 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
P + YI LA L + ++ + + A+ NP
Sbjct: 274 PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 6e-32
Identities = 38/259 (14%), Positives = 82/259 (31%), Gaps = 26/259 (10%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L+ Q A N GN + EA++ Y++A+ L P+ Y N++A ++ GD+
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEA 186
E+ ++ AL+ PD + ++LG +A V S G+ A
Sbjct: 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135
Query: 187 KNLHTENIK-----------------PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229
+NL+ + +K P + + + +++ ++ A
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 230 NPLLAEAYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
+ + + L L+ +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 281 AGDMEQAVQAYVTALQYNP 299
++ A ++ +P
Sbjct: 256 KNNLLDAQVLLQESINLHP 274
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 30/256 (11%), Positives = 58/256 (22%), Gaps = 47/256 (18%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY--KERGQLQEALENYRHAVRLKPDFIDGYI 114
D + + A+++ + + N K L L+ +
Sbjct: 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------- 167
++ A ++ +P L L E +
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPTPN-SYIFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 168 ----CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
G + L AK +
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQK------------------------------- 335
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
A NP Y L + ++G+ E+ + P + A L GD
Sbjct: 336 --AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393
Query: 284 MEQAVQAYVTALQYNP 299
+ A++ Y A +
Sbjct: 394 FDTAIKQYDIAKRLEE 409
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-30
Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ F A+ NP Y + G +Y + A E+++ A L P+ + YI L
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
A L G ++ + + P + + +G+ AI
Sbjct: 351 ACLLYKQGKFTESEA-----------FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
++ A L+ ++ +G ++ +A I R ++
Sbjct: 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-29
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+I +P +Y L ++ QE + ++ AV L P++ Y + D +
Sbjct: 269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYK 327
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A + + KA P+ + L C+ QG+ + F + P
Sbjct: 328 NAKE-----------DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ +L + FD A
Sbjct: 377 LPEVPTFFAEILTDRGDFDTA 397
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 40/244 (16%), Positives = 80/244 (32%), Gaps = 15/244 (6%)
Query: 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNP--EHPNYVAAARA 538
R + Q + + + + + S ++ + NY A
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 539 TKYVYNVEPDLTREGGSIPITLTFE-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597
T EG + L + +T+ A A G +
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657
+ L +A + ++ L P + YI LA L + ++ + + KA+
Sbjct: 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFK-----------FFQKAV 303
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ P++ + + G ++ + A F+KA SL+P + YI L +L + F +
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363
Query: 718 NTLF 721
F
Sbjct: 364 EAFF 367
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 36/195 (18%), Positives = 59/195 (30%), Gaps = 15/195 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A NP Y L + ++G+ E+ + P + A L GD +
Sbjct: 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD 395
Query: 637 QAVQAYVTALQYNPSCY-----LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
A++ Y A + + + + S+ + + AI KA
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF---------YVSSYFMITDEDIDVILERCE 742
LDP A I L + + D A LF T + I +R
Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLR 515
Query: 743 AKTEELNKKFEQLGE 757
A ++ K E
Sbjct: 516 AD-PIISAKMELTLA 529
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 47/219 (21%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L+ + ++ K +S F + P L E + + +RG A++ Y A RL+
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409
Query: 108 DFIDGYINLAAALVAA----------------GDMEQAVQAYVTALQYNPDLYCVRSDLG 151
++ + + A A++ A + +P + L
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 152 NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211
L + ++DEA +L+ + + + A
Sbjct: 470 QLKLQMEKIDEAIELF---------EDSA------------ILARTMDEKLQAT------ 502
Query: 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
T A ++ +P+++ Y+ +G L
Sbjct: 503 ----TFAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L+ Q A N GN + EA++ Y++A+ L P+ Y N++A ++ GD+
Sbjct: 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+ ++ KA+E +PD + A + G A+ +SL+
Sbjct: 76 EKVIE-----------FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNG 123
Query: 696 NFLDAYINLG 705
+F A I
Sbjct: 124 DFDGASIEPM 133
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 3e-21
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F + +++ + AI+ +P YSN+ Y G L++ +E A+ +KPD
Sbjct: 36 FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS-------------CYLKAIETRPDFAVAW- 667
+ A+A + G+ A+ + L N +A++ +
Sbjct: 96 LLRRASANESLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE 154
Query: 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDP-----NFLDAYINLGNVLKE 710
V + + F+ + + N+ AY L + L+
Sbjct: 155 GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 1e-19
Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 18/220 (8%)
Query: 599 GQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654
G + L P + N A + +A++ Y
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIK-----------YYQ 49
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714
AIE P+ V +SN+ + + G++ I KA+ + P+ A + + + F
Sbjct: 50 YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109
Query: 715 DRANTLFYVSS-YFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVY 773
A V S I+ +LER K K + + P+ +
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM--KVLNENLSKDEGRGSQVLPSNTSL 167
Query: 774 KFEGEDYREKQKIVPIGHWIEPPKRERKANYAVDAYFKEA 813
+ ++ + + A+ +
Sbjct: 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 4e-17
Identities = 14/134 (10%), Positives = 38/134 (28%), Gaps = 30/134 (22%)
Query: 577 AIKQNPLLAEAYSNLGNV----------------YKERGQLQEALENYRHAVRLKPDFID 620
A + + + + +G + + + A++ A L P
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSC--------------YLKAIETRPDFAVA 666
I LA + +++A++ + + + K + P +
Sbjct: 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
Query: 667 WSNLGCVFNAQGEI 680
+ A+G +
Sbjct: 524 MELTLARYRAKGML 537
|
| >2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Length = 374 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-38
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 792 WIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEI 851
+ P KRERK NY++D Y+K+ L T P PR PK + Q PP+L + ++E
Sbjct: 2 LLNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLQVLYEKER 61
Query: 852 YYFRKTVGYKVPKNPELGSDA--------TKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
+ K GY + + + + + ++ S+PLTEEE K + ++
Sbjct: 62 MWTAKKTGYVPTMDDVKAAYGKISDQEEQKEKLELLKLSVNNSQPLTEEEEKMKADWESE 121
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-37
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 11/133 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE---- 56
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P A AW NLG + QG+ AI +++KA+ LDP +A+ NL
Sbjct: 57 -------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Query: 705 GNVLKEARIFDRA 717
GN + +D A
Sbjct: 110 GNAYYKQGDYDEA 122
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-34
Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 56/191 (29%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
AL+ +P +LGN G DEA + Y KAL +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ---------KAL------------ELD 99
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
P AEA+ NLGN Y ++G EA+E
Sbjct: 100 P-----------RS------------------------AEAWYNLGNAYYKQGDYDEAIE 124
Query: 256 NYRHAVRLKPD 266
Y+ A+ L P
Sbjct: 125 YYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-32
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A++ Y KA+E P A AW NLG + QG+ AI +++KA+ LDP
Sbjct: 87 EAIE-----------YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+A++ Y AL+ +P +LGN G DEA + Y
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 90.1 bits (225), Expect = 2e-21
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA I Y +K A++ +P
Sbjct: 7 LGNAYYKQGDYDEA------------------IEY-Y--QK------------ALELDPR 33
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
Query: 293 TALQYNP 299
AL+ +P
Sbjct: 94 KALELDP 100
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 87.8 bits (219), Expect = 1e-20
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 128 QAVQAYVTALQYNPD 142
+A++ Y AL+ +P
Sbjct: 121 EAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 80.9 bits (201), Expect = 3e-18
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P + + NL A GD ++A++ Y
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 61 ALELDP 66
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-37
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 11/126 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y KA+E P+ A AW NLG + QG+ AI +++KA+ LDPN +A NL
Sbjct: 65 -------YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 705 GNVLKE 710
GN ++
Sbjct: 118 GNAKQK 123
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-27
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD +
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 94
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+A++ Y KA+E P+ A A NLG QG
Sbjct: 95 EAIE-----------YYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-26
Identities = 50/207 (24%), Positives = 71/207 (34%), Gaps = 90/207 (43%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + A+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------AW-- 46
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
YN LGN G DEA
Sbjct: 47 ---YN--------------------------------LGNAYYKQGDYDEAIE------- 64
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
Y +K A++ +P AEA+ NLGN Y ++G EA+E
Sbjct: 65 ------------YY--QK------------ALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAG 282
Y+ A+ L P+ + NL A G
Sbjct: 99 YYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 97.5 bits (244), Expect = 4e-24
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N G ++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y
Sbjct: 13 YNLGNAY------YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
+ A+ L P+ + + NL A GD ++A++ Y AL+ +P+ + +LGN + G
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 90.1 bits (225), Expect = 1e-21
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 33/127 (25%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA Y +K A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIE-------------------YY--QK------------ALELDPN 41
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV 292
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 293 TALQYNP 299
AL+ +P
Sbjct: 102 KALELDP 108
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 80.1 bits (199), Expect = 4e-18
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 8e-37
Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 36/274 (13%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLD---KSAHFSTLAIKQNPLL 75
++ +Y A +L ++ N+ + + +++ K D K +
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ + G + ++GQ A++ Y+ AV +D Y + + G+ A+Q
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGRLD 184
++ V +LG +A + A
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDT 193
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
K A Y K + + K L EA + Y
Sbjct: 194 ---------------KQGLAKPY-Y--EKLIEVCAPG----GAKYKDELIEANEYIAYYY 231
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
+A +++ + L P L L
Sbjct: 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 33/241 (13%), Positives = 60/241 (24%), Gaps = 50/241 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV---QA 132
+ + + EA+E + K + Y A + A +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALG 181
Y + + G +L G+ A Y V D +G+ G
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241
A + I+ + + LG
Sbjct: 123 NFPLAIQYMEK---------------------------------QIRPTTTDPKVFYELG 149
Query: 242 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM---EQAVQAYVTALQYN 298
Y + +A ++ + LKP+ GY+ A A A A Y ++
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209
Query: 299 P 299
Sbjct: 210 A 210
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + + G + ++GQ A++ Y+ AV +D Y + + G+
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+Q K I + LG + E A F K + L PN
Sbjct: 126 LAIQ-----------YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 697 FLDAYINLGNVLKE 710
Y+
Sbjct: 175 IYIGYLWRARANAA 188
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 6/148 (4%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+ + I+ + + LG Y + +A ++ + LKP+ GY+
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR 182
Query: 626 AAALVAAGDM---EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
A A A A Y ++ + + + A + + +
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVCAP---GGAKYKDELIEANEYIAYYYTINRDKVK 239
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKE 710
A ++ ++LDP A L L+
Sbjct: 240 ADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 14/159 (8%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN---YRHAVRLKPDF 618
F+ ++ + Y+ Y E + A ++ Y V
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ L+ G A+Q Y A++ + +G F +G
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQ-----------QYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
LAI + EK + + LG + + +A
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 8/133 (6%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + + EA+E + K + Y A + A +
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI-- 60
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y + + + G + +G+ LAI ++ AV D LD Y +
Sbjct: 61 ------ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI 114
Query: 705 GNVLKEARIFDRA 717
G+ F A
Sbjct: 115 GSYFYNKGNFPLA 127
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ ++ + Y +G+ + +G A++ +R + L A +
Sbjct: 100 AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG---EIWLAIHHFEKAVSL 693
+A S ++K +E +P+ + + AQ + LA ++EK + +
Sbjct: 160 KAD-----------SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 694 DP--------NFLDAYINLGNVLKEARIFDRA 717
++A + R +A
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 21/207 (10%), Positives = 44/207 (21%), Gaps = 51/207 (24%)
Query: 48 LSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
+ S + + + I+ + + LG Y + +A ++ + LKP
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 108 DFIDGYINLAAALVAAGDM---EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ GY+ A A A A Y ++
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---------------GAKYKD 218
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+L + +A
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKN-------------------------------- 246
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQ 251
+ +P +A L +
Sbjct: 247 -ILALDPTNKKAIDGLKMKLEHHHHHH 272
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 12/114 (10%), Positives = 24/114 (21%), Gaps = 22/114 (19%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQL---QEALENYRHAVRL--------KPDFIDGYINL 625
++ P + Y + A Y + + K + I+ +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
A D +A + + P A L
Sbjct: 228 AYYYTINRDKVKADA-----------AWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 11/152 (7%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Y G++ A ++ + R T + V L ++ ++ K+ ++ P +
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178
Query: 79 YSNLGNVYKERGQL---QEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDME 127
Y + A Y + + K + I+ +A D
Sbjct: 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
+A A+ L +P L L+
Sbjct: 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 35/303 (11%), Positives = 91/303 (30%), Gaps = 28/303 (9%)
Query: 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTL- 67
+ + + + E + ++ L +F+ ++ +
Sbjct: 21 MASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDV 80
Query: 68 -------------AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGY 113
+ + A+A G EA AV+L+P+ ++ +
Sbjct: 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
L GD+ A + AL + + +L +L+ L +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS------- 192
Query: 174 GNLLKALGRLDEAKNLHTENIKP-VTMKVQNAIVCNYGGRKPTTLESAHFS----TLAIK 228
+++ ++ + A + + + + + G+ P + A + +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
+ + + N ++K EALE + A L P + + L + +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312
Query: 289 QAY 291
++
Sbjct: 313 ESK 315
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 2e-24
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 22/145 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + A+A G EA AV+L+P+ ++ + L GD+
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL---------AIHH 686
A + AL + + V+ NL V ++
Sbjct: 154 TSAHTCFSGALTHCKN------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEA 711
+ AV +D ++ LGN
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSL 226
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 26/158 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAA 627
A+ + NL V ++ + +++ + AV++ + L
Sbjct: 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221
Query: 628 ALVAA--------GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
A ++ +QA+ AY + K N + +
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAY--------AQAEKVDRKASSNPDLHLNRATLHKYEES 273
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A+ F +A +LDP + + +L+
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL--VAAGD 634
A+K P L EA++ LG VY ++G + A + A+ + NL+ L +
Sbjct: 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDS 187
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF--------NAQGEIWLAIHH 686
++ + + +++ A++ +W LG + A+
Sbjct: 188 GDEHSRHVMDSVR----QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243
Query: 687 FEKAVSLD---PNFLDAYINLGNVLKEARIFDRA 717
+ +A +D + D ++N + K + A
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA 277
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 4e-18
Identities = 44/314 (14%), Positives = 84/314 (26%), Gaps = 72/314 (22%)
Query: 19 YQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAE 77
DY AE + + E L ++++ + + + A+
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV 171
Query: 78 AYSNLGNVYKERG---------QLQEALENYRHAVRLKPDFIDGYINLAAALVAA----- 123
+ NL V ++ + +++ + AV++ + L A ++
Sbjct: 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231
Query: 124 ---GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
+QA+ AY A + + DL+ + L K
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKAS-----------------SNPDLHL---NRATLHKYE 271
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
EA FS A +P E
Sbjct: 272 ESYGEAL--------------------------------EGFSQ-AAALDPAWPEPQQRE 298
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
+ + +L LE+ K + G + A Q+ L+ PL
Sbjct: 299 QQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPL 358
Query: 301 LKKEDGWNTEPFVL 314
+ G N+ VL
Sbjct: 359 STLQPGVNSGTVVL 372
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 3e-16
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 25/150 (16%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY--------KERGQLQEALENYRHAVRLK- 615
R + S + LA++ + L ++ LGN Y + Q+AL Y A ++
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 616 --PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
D ++N A +A++ + +A P + +
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALE-----------GFSQAAALDPAWPEPQQREQQL 301
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703
+ + K P L + +
Sbjct: 302 LEFLSRLTSLLESKGK---TKPKKLQSMLG 328
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 5/128 (3%)
Query: 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650
+ E + + L+ + V F D Y + A + + LQ
Sbjct: 33 GSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQ--- 89
Query: 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLDPNFLDAYINLGNVLK 709
+ + + A A G N + A KAV L+P ++A+ LG V
Sbjct: 90 -QMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW 148
Query: 710 EARIFDRA 717
+ A
Sbjct: 149 KKGDVTSA 156
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
+ + A+A G EA AV+L+P+ ++ + L GD+
Sbjct: 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 285 EQAVQAYVTALQYNP 299
A + AL +
Sbjct: 154 TSAHTCFSGALTHCK 168
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 8e-13
Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 5/145 (3%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
++ + + N ++K EALE + A L P + + L +
Sbjct: 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+++ L ++ + +L P
Sbjct: 310 SLLESKGKTKPKKLQSMLGSLRPAHLGPCGDG-----RYQSASGQKMTLELKPLSTLQPG 364
Query: 697 FLDAYINLGNVLKEARIFDRANTLF 721
+ LG V+ ++ F
Sbjct: 365 VNSGTVVLGKVVFSLTTEEKVPFTF 389
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 138 bits (347), Expect = 9e-34
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 56/228 (24%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G +++A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
Y A++ +P S++GN LK +
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQ--------------------------------- 91
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251
VQ A+ C AI+ NP A+A+SNL +++K+ G +
Sbjct: 92 --------DVQGALQCYTR---------------AIQINPAFADAHSNLASIHKDSGNIP 128
Query: 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA+ +YR A++LKPDF D Y NLA L D + +
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 131 bits (329), Expect = 2e-31
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E ++++ A++ P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
N+ L D++ A+Q CY +AI+ P FA A SNL + G I
Sbjct: 81 SNMGNTLKEMQDVQGALQ-----------CYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKE 710
AI + A+ L P+F DAY NL + L+
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQI 157
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-31
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
P A++ +NL N+ +E+G ++EA+ YR A+ + P+F + NLA+ L G +++A+
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
Y +AI P FA A+SN+G ++ A+ + +A+ ++P F DA
Sbjct: 65 -----------HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 701 YINLGNVLKEARIFDRANTLF 721
+ NL ++ K++ A +
Sbjct: 114 HSNLASIHKDSGNIPEAIASY 134
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 7e-26
Identities = 44/154 (28%), Positives = 77/154 (50%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
LA+ + + G+ E A R + L+S+ Q KL ++ AI+ +P
Sbjct: 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A+AYSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++ +A+ +Y
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
TAL+ PD +L + L+ + + +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-25
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 56/195 (28%)
Query: 105 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
P D NLA G++E+AV+ Y AL+ P+ S+L ++L+ G+L
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL---- 59
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
EA + E
Sbjct: 60 -------------------QEALMHYKE-------------------------------- 68
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
AI+ +P A+AYSN+GN KE +Q AL+ Y A+++ P F D + NLA+ +G++
Sbjct: 69 -AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 285 EQAVQAYVTALQYNP 299
+A+ +Y TAL+ P
Sbjct: 128 PEAIASYRTALKLKP 142
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-25
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
+ L L++I + ++++ A++ P A A+SNL +V +++G+LQEAL +Y
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
+ A+R+ P F D Y N+ L D++ A+Q Y A+Q NP S+L ++ K G
Sbjct: 67 KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 160 LDEAKDLYC-----------VRSDLGNLLKALGRLD 184
+ EA Y +L + L+ +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ KL ++ AI+ +P A+AYSN+GN KE +Q AL+ Y A+++ P F D +
Sbjct: 55 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
NLA+ +G++ +A+ Y A++ +PDF A+ NL +
Sbjct: 115 SNLASIHKDSGNIPEAIA-----------SYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+K VS+ + L+ L +V + +
Sbjct: 164 YDERMKKLVSIVADQLEKN-RLPSVHPHHSMLYPLS 198
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 4e-19
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
LA Q G + A H + R + + + + + + T AI+ NP
Sbjct: 49 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
A+A+SNL +++K+ G + EA+ +YR A++LKPDF D Y NLA L D +
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
+ D ++ L ++ L
Sbjct: 169 KKLVSIVAD-QLEKNRLPSVHPHHSMLYPL 197
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 88.7 bits (219), Expect = 3e-18
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
P D NLA G++E+AV+ Y KA+E P+FA A SNL V
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVR-----------LYRKALEVFPEFAAAHSNLASV 52
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
QG++ A+ H+++A+ + P F DAY N+GN LKE + A
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGA 96
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 2e-15
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E + + + T AI+ NP A+A+SNL +++K+ G + EA+ +YR A++LKPDF D Y
Sbjct: 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
NLA L D + K + D + L V ++
Sbjct: 149 CNLAHCLQIVCDWTDYDER-----------MKKLVSIVADQLEK-NRLPSVHPHHSMLYP 196
Query: 683 AIHHFEKAVS 692
H F KA++
Sbjct: 197 LSHGFRKAIA 206
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-32
Identities = 32/243 (13%), Positives = 61/243 (25%), Gaps = 45/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L PD + + A ++
Sbjct: 218 AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQ 277
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + G +AL + + C +
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 337
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 338 KQALETVQRLLPVLCQ---------------------------------AHGLTPDQVVA 364
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L PD + + A +++ + A
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHG 423
Query: 297 YNP 299
P
Sbjct: 424 LTP 426
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-31
Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ P A ++ + +Q L A L P + + A M+
Sbjct: 184 PLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQ 243
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + +AL + + C + G
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG 303
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 304 KQALETVQRLLPVLCQ---------------------------------AHGLTPDQVVA 330
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L PD + + A +++ + A
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390
Query: 297 YNP 299
P
Sbjct: 391 LTP 393
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 5e-31
Identities = 41/297 (13%), Positives = 75/297 (25%), Gaps = 32/297 (10%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G L + Q + + + +
Sbjct: 229 IASHDGGKQAL-------ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L PD + + A
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
+++ + A PD + G +AL + + C
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC--------------- 386
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL-AIKQNPLLAEAYSNLGN 242
+A L + + AI N G + T++ A P A ++
Sbjct: 387 -QAHGLTPDQVV--------AIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 437
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L L P + + A ++Q + A P
Sbjct: 438 GKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-29
Identities = 30/243 (12%), Positives = 59/243 (24%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L A L PD + + A ++
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A PD + G +AL + + C +
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + + + A P A
Sbjct: 609 KQALETVQRLLPVLCQ---------------------------------AHGLTPAQVVA 635
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ + +Q L A L PD + + A +++ + A
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Query: 297 YNP 299
Sbjct: 696 LTQ 698
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-27
Identities = 29/243 (11%), Positives = 55/243 (22%), Gaps = 44/243 (18%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L L P + + A ++
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ 480
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
Q + A PD + +AL + + C + G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236
+AL + A P A
Sbjct: 541 KQALETVQRL---------------------------------LPVLCQAHGLTPDQVVA 567
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
++ G + +Q L A L + + A +++ + A
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627
Query: 297 YNP 299
P
Sbjct: 628 LTP 630
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 29/248 (11%), Positives = 62/248 (25%), Gaps = 49/248 (19%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYINLAAALVA 122
++ PL + + + EA+ R+A+ L P + + A
Sbjct: 145 ELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQA 204
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRS 171
+++ + A P + +AL + + C +
Sbjct: 205 LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIA 264
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
+AL + + + A P
Sbjct: 265 SNIGGKQALETVQRLLPVLCQ---------------------------------AHGLTP 291
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
A ++ G + +Q L A L PD + + A +++ +
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 292 VTALQYNP 299
A P
Sbjct: 352 CQAHGLTP 359
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 28/297 (9%), Positives = 64/297 (21%), Gaps = 44/297 (14%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
+ + Q + + + + A
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ 596
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
+ A ++ + +Q L A L P + + A +++ +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKALGR 182
A PD + G +AL + + C + +AL
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALET 716
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
+ + + A P A ++ G
Sbjct: 717 VQRLLPVLCQ---------------------------------AHGLTPDQVVAIASNGG 743
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ +Q L A L P + + A +++ +
Sbjct: 744 GKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-26
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 218 AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQ 277
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P+
Sbjct: 278 RLLPVLC-----------QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 327 QVVAIASHDGGKQALETVQRL 347
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQ 311
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ A + + +A L P+
Sbjct: 312 RLLP-----------VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 361 QVVAIASNGGGKQALETVQRL 381
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 9e-25
Identities = 40/311 (12%), Positives = 78/311 (25%), Gaps = 23/311 (7%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
IA G L + Q + + +
Sbjct: 602 IASNIGGKQAL-------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLP 654
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 123
A P A ++ G + +Q L A L + + + A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSD 172
+++ + A PD + G +AL + + C +
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL--AIKQN 230
+AL + + ++ +V AI N GG++ L A
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVV-AIASNIGGKQALETVQRLLPVLCQAHGLT 833
Query: 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA--V 288
A ++ + +Q L L PD + + A +++ V
Sbjct: 834 QDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV 893
Query: 289 QAYVTALQYNP 299
L +
Sbjct: 894 LCQDHGLTLDQ 904
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 22/167 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379
Query: 637 QAVQAYVTALQYNPS----------------------CYLKAIETRPDFAVAWSNLGCVF 674
+ + A P +A PD VA ++
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 439
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
A + + + L P + A + + + +
Sbjct: 440 QALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 625 AHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 684
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A + VA ++ A + + +A L P+
Sbjct: 685 RLLPVLC-----------QAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 734 QVVAIASNGGGKQALETVQRL 754
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 3e-22
Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L PD + + A ++
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ + A +A P VA ++
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P+ + A + G + R
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-22
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ P A ++ + +Q L A L P + + A M+
Sbjct: 184 PLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQ 243
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ A + + +A L P+
Sbjct: 244 RLLP-----------VLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 293 QVVAIASHGGGKQALETVQRL 313
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 6e-22
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L PD + + A ++
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P+
Sbjct: 346 RLLP-----------VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 697 FLDAYINLGNV 707
+ A + G
Sbjct: 395 QVVAIASNGGK 405
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-21
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A + A ++ + +Q L A L P + + A ++
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQ 650
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L
Sbjct: 651 RLLPVLC-----------QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 700 QVVAIASNNGGKQALETVQRL 720
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 2e-21
Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L L P + + A ++
Sbjct: 421 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQ 480
Query: 637 QAVQAYVTALQYNPS-----------------------CYLKAIETRPDFAVAWSNLGCV 673
Q + A P +A PD VA ++ G
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG 540
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P+ + A + G + R
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 584
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 3e-21
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L + + + A ++
Sbjct: 659 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQ 718
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + +A PD VA ++ G A + + +A L P
Sbjct: 719 RLLPV-----------LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPA 767
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + + R
Sbjct: 768 QVVAIASNIGGKQALETVQRL 788
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 6e-20
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ + +Q L A L PD + + A ++
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 548
Query: 637 QAVQAYVTALQYNP-----------------------SCYLKAIETRPDFAVAWSNLGCV 673
+ + A P +A VA ++
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + +A L P + A + + R
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRL 652
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 9e-15
Identities = 40/228 (17%), Positives = 67/228 (29%), Gaps = 17/228 (7%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
++A + G Q+ E ++KP ALV G A++
Sbjct: 43 SDASPAAQVDLRTLGYSQQQQE------KIKPKVRSTVAQHHEALVGHG----FTHAHIV 92
Query: 136 ALQYNPD-LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194
AL +P L V +++ AL D+ V L +A L +
Sbjct: 93 ALSQHPAALGTVAVTYQHIITALPEATHE-DIVGVGKQWSGARALEALLTDAGELRGPPL 151
Query: 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQ 251
+ T Q + GG A + L P A ++ + +Q
Sbjct: 152 QLDTG--QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQ 209
Query: 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
L A L P + + A M++ + A P
Sbjct: 210 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 1e-14
Identities = 34/275 (12%), Positives = 69/275 (25%), Gaps = 41/275 (14%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A P A ++ + +Q L L + + A ++
Sbjct: 761 AHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ 820
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNL 176
+ + A D + +AL + + C +
Sbjct: 821 RLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGG 880
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESA-HFSTLAIKQNPLLAE 235
+AL + + ++ +T+ AI N G + T++ P
Sbjct: 881 KQALETVQRLLPVLCQDHG-LTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVV 939
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL--------------------- 274
A ++ + +Q L L P+ + +
Sbjct: 940 AIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALA 999
Query: 275 ------AAALVAAGDMEQAVQAYVTALQYNPLLKK 303
AL G A+ A L + P L +
Sbjct: 1000 ALTNDHLVALACLGG-RPAMDAVKKGLPHAPELIR 1033
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 3e-13
Identities = 19/164 (11%), Positives = 40/164 (24%), Gaps = 23/164 (14%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A P A ++ G + +Q L A L P + + A ++
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786
Query: 637 QAVQAYVTALQYNPS-----------------------CYLKAIETRPDFAVAWSNLGCV 673
+ + + +A D VA ++
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A + + + L P+ + A + + R
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRL 890
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 7e-12
Identities = 25/151 (16%), Positives = 39/151 (25%), Gaps = 6/151 (3%)
Query: 567 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLA 626
L A I P + EAL +R P +D +
Sbjct: 101 LGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVK 160
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
A +AV A AL + P VA ++ A + +
Sbjct: 161 IAKRGGVTAMEAVHASRNAL------TGAPLNLTPAQVVAIASNNGGKQALETVQRLLPV 214
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+A L P + A + + R
Sbjct: 215 LCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 21/166 (12%), Positives = 41/166 (24%), Gaps = 22/166 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A A ++ + +Q L L PD + + A ++
Sbjct: 829 AHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQ 888
Query: 637 QA--VQAYVTALQYNPS--------------------CYLKAIETRPDFAVAWSNLGCVF 674
+ V L + + PD VA ++
Sbjct: 889 RLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGK 948
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
A + + + L PN + A + G I + +
Sbjct: 949 QALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRP 994
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 4e-07
Identities = 16/141 (11%), Positives = 36/141 (25%), Gaps = 12/141 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A ++ + +Q L A L D + + A ++
Sbjct: 795 DHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQ 854
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + + PD VA ++ A + + + L +
Sbjct: 855 RLLPV-----------LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLD 903
Query: 697 FLDAYINLGNVLKEARIFDRA 717
+ A + G + R
Sbjct: 904 QVVAIASNGGK-QALETVQRL 923
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 42/319 (13%), Positives = 97/319 (30%), Gaps = 48/319 (15%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSS----------IHFQCRKLDKSAH 63
A Y G + + ++ + + S + + +++
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 64 FSTLAIKQNPLLAEAYSNLGNVY---KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
A+++ P E S L Q A++ R A+RL PD + LA L
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219
Query: 121 VA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-------- 168
+ + + AL+ P + V + D+A +L
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 169 ---VRSDLGNLLKALGR-LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+ +G +A + + + + + +A+ AH
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV--------------AHLKK 325
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAA 281
A + N L S L +++ Q +EA ++ + + ++ +
Sbjct: 326 -ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384
Query: 282 -GDMEQAVQAYVTALQYNP 299
++A+ ++ ++ N
Sbjct: 385 MKCEDKAIHHFIEGVKINQ 403
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-27
Identities = 34/288 (11%), Positives = 82/288 (28%), Gaps = 52/288 (18%)
Query: 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFST 66
L + L ++ + + E+ + + T VL + + + + DK+
Sbjct: 215 LALKLHKMRE---EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 67 LAIKQNPLLAEAYSNLGNVYKERG-------------------QLQEALENYRHAVRLKP 107
A++ P A + +G Y+ + + A+ + + A
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ LA+ A E+A + + L+
Sbjct: 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-----------------VAKQLLH 374
Query: 168 CVRSDLGNLLK-ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226
GN + D+A + E +K + ++ + +
Sbjct: 375 L---RYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMKDKLQKIAKMR------ 422
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274
+ +N +EA L + + ++Q+A E+ +
Sbjct: 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 10/154 (6%)
Query: 560 LTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY---KERGQLQEALENYRHAVRLKP 616
L + +++ A+++ P E S L Q A++ R A+RL P
Sbjct: 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206
Query: 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
D + LA L M + + + +A+E P + +
Sbjct: 207 DNQYLKVLLALKL---HKMREEGEEEGEGEKL----VEEALEKAPGVTDVLRSAAKFYRR 259
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
+ E AI +KA+ PN + +G +
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 34/168 (20%)
Query: 577 AIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632
AI+ NP L +E + E + A+ P D + A
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE------------- 679
+ ++A++ KA+E P+ A +GC + A+
Sbjct: 261 DEPDKAIE-----------LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309
Query: 680 ------IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
I A+ H +KA + N L ++ A ++ A F
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 43/261 (16%), Positives = 74/261 (28%), Gaps = 46/261 (17%)
Query: 64 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDFIDGYI 114
F + A + L + +GQ + ALE R A L + + +
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG 98
Query: 115 NLAAALVAAGDMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALG--RLDEAK 164
N A G + Y + + + G G + + AK
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN--AIVCNYGGRKPTTLESAHF 222
+ KAL KP + + AI P + +
Sbjct: 159 VCF---------EKAL------------EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP 197
Query: 223 STLAIKQNPLLAEAYSNLGNVY----KERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
AI+ NP L +E + E + A+ P D + A
Sbjct: 198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257
Query: 279 VAAGDMEQAVQAYVTALQYNP 299
+ ++A++ AL+Y P
Sbjct: 258 RRKDEPDKAIELLKKALEYIP 278
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 98.1 bits (244), Expect = 1e-21
Identities = 16/147 (10%), Positives = 42/147 (28%), Gaps = 17/147 (11%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAA- 632
A + N L S L +++ Q +EA ++ + + ++ +
Sbjct: 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385
Query: 633 GDMEQAVQAYVTALQYNPSCY-------------LKAIETRPDFAVAWSNLGCVFNAQGE 679
++A+ ++ ++ N + + A L + +
Sbjct: 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGN 706
+ A E+ + A G
Sbjct: 446 MQQADEDSERGLESGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 3e-20
Identities = 28/183 (15%), Positives = 47/183 (25%), Gaps = 45/183 (24%)
Query: 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDFIDGYI 623
F + A + L + +GQ + ALE R A L + + +
Sbjct: 39 FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG 98
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNP--------------------------------- 650
N A G +
Sbjct: 99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAK 158
Query: 651 SCYLKAIETRPDFAVAWSNLGCVF---NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
C+ KA+E +P S L + AI +A+ L+P+ + L
Sbjct: 159 VCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218
Query: 708 LKE 710
L +
Sbjct: 219 LHK 221
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 1e-16
Identities = 17/191 (8%), Positives = 45/191 (23%), Gaps = 56/191 (29%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-------------------QLQEALE 606
+ DK+ A++ P A + +G Y+ + + A+
Sbjct: 262 EPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVA 321
Query: 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP---------------- 650
+ + A + LA+ A E+A +
Sbjct: 322 HLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381
Query: 651 -----------SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
+++ ++ + + +S + +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA----------KMRLSKNGADSE 431
Query: 700 AYINLGNVLKE 710
A L + +
Sbjct: 432 ALHVLAFLQEL 442
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 11/115 (9%)
Query: 217 LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------KPDF 267
E F + A + L + +GQ + ALE R A L +
Sbjct: 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS 93
Query: 268 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKAL 322
+ + N A G + K + E LD E
Sbjct: 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE--KFSSPYRIESPELDCEEGWTR 146
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 19/177 (10%), Positives = 47/177 (26%), Gaps = 28/177 (15%)
Query: 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAH 63
+ + + + A H + N V +L+S+H + +++ +
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Query: 64 FSTLAIKQNPLLAEA---YSNLGNV-YKERGQLQEALENYRHAVRLKPDFIDG------- 112
+ + + GN + +A+ ++ V++ +
Sbjct: 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415
Query: 113 -----------------YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152
LA M+QA + L+ + S G
Sbjct: 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 11/146 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A++ P A+ L + G + + L P + L
Sbjct: 15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A +A + P+ LG G+ A + +A L P
Sbjct: 75 EAAV-----------LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 697 FLDAYINLGNVLKEARIFDRANTLFY 722
L N + + + L
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSA 149
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 11/123 (8%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
L R AVR +P ++ LA A + GD + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM-----------AVQRGLA 51
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
P A + LG V Q A ++A P + LG+ L++A + A
Sbjct: 52 LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA 111
Query: 719 TLF 721
+
Sbjct: 112 AAY 114
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 33/198 (16%), Positives = 47/198 (23%), Gaps = 56/198 (28%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149
L R AVR +P ++ LA A + GD A L +P +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 150 LGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209
LG + R EA L +
Sbjct: 63 LGRVRWTQ-----------------------QRHAEAAVLLQQ----------------- 82
Query: 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 269
A P LG+ ++ GQ + A Y A +L P+
Sbjct: 83 ----------------ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 270 GYINLAAALVAAGDMEQA 287
L D
Sbjct: 127 ITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 33/161 (20%), Positives = 52/161 (32%), Gaps = 1/161 (0%)
Query: 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYS 80
D R + L+L+ + +P EA +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 140
LG V + + EA + A P+ + L AL AG E A AY A Q
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121
Query: 141 PDLYCVRSDLGNLLKALGRLDEAKDLYC-VRSDLGNLLKAL 180
P+ + + L N + L L VR+ + + A+
Sbjct: 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-19
Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 56/177 (31%)
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGR 182
D + + A+++ P + L + +G
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDT---------------------- 39
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
+ + +P EA + LG
Sbjct: 40 -TAGEMAVQR---------------------------------GLALHPGHPEAVARLGR 65
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
V + + EA + A P+ + L AL AG E A AY A Q P
Sbjct: 66 VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 26/158 (16%), Positives = 43/158 (27%), Gaps = 14/158 (8%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ +P EA + LG V + + EA + A P+
Sbjct: 35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
+ L AL AG E A Y +A + P+ + L +
Sbjct: 95 LWLGHALEDAGQAEAAAA-----------AYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 683 A---IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
AV+ ++ + L A A
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 7e-17
Identities = 22/119 (18%), Positives = 38/119 (31%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L LA E GD + E + + + L + + ++ ++A A
Sbjct: 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
P LG+ ++ GQ + A Y A +L P+ L D
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
D + + A+ RP VAW L G+ ++ +
Sbjct: 2 TADGPRELL-----------QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL 50
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+L P +A LG V + A L
Sbjct: 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-28
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
++ T K + + ++ + L YK+ +A Y+ ++ P+ +D A
Sbjct: 37 RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHH 686
V G + A++ Y K ++ D A LG + E +
Sbjct: 97 MQVCRGQEKDALR-----------MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145
Query: 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
K +S A G +++A
Sbjct: 146 DYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
R DK+ F +++ P + + RGQ ++AL Y ++L+ D + I
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIF 127
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
L + E+ L+ K + + A G A
Sbjct: 128 LGNYYYLTAEQEKK------KLET----DYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR 177
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDR 716
+ +K + P+ +A L +L+ + +R
Sbjct: 178 NSLQKVILRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 73/241 (30%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI----------------NLAAA 119
+ + E GQ +A+ +R + L D + Y LA A
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 120 LVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
+ ++A Y LQ P N + L +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAP----------NNVDCL-------------EACAEMQVC 100
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
G+ +A ++ + ++ A
Sbjct: 101 RGQEKDALRMYEK---------------------------------ILQLEADNLAANIF 127
Query: 240 LGNVYKERGQL-QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
LGN Y + ++ LE + + + E+A + +
Sbjct: 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187
Query: 299 P 299
P
Sbjct: 188 P 188
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-23
Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 27/142 (19%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI----------------NLAAA 628
+ + E GQ +A+ +R + L D + Y LA A
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
+ ++A Y + ++ P+ + +G+ A+ +E
Sbjct: 64 YKKNRNYDKAYL-----------FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112
Query: 689 KAVSLDPNFLDAYINLGNVLKE 710
K + L+ + L A I LGN
Sbjct: 113 KILQLEADNLAANIFLGNYYYL 134
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 3e-22
Identities = 35/276 (12%), Positives = 71/276 (25%), Gaps = 74/276 (26%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+L+ +AG A + Q + T ++ T K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT------------------EMYYWTNVDK 48
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ + ++ + L YK+ +A Y+ ++ P+ +D A V G + A+
Sbjct: 49 NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
+ Y LQ D LGN ++ K L + +
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEK---------------KKLETDYKKLSSP 153
Query: 191 TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250
T+ A G +
Sbjct: 154 TKM----------------------------------------QYARYRDGLSKLFTTRY 173
Query: 251 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
++A + + + P L L ++ +
Sbjct: 174 EKARNSLQKVILRFPSTEAQK-TLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-20
Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 41/192 (21%)
Query: 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168
+D + +A + AG QAV + + N D + ++
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-------EMYYWTNVDKNSEISSK 55
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+ ++L K D+A + E ++
Sbjct: 56 LATELALAYKKNRNYDKAYLFYKE---------------------------------LLQ 82
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ-A 287
+ P + + RGQ ++AL Y ++L+ D + I L + E+
Sbjct: 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 288 VQAYVTALQYNP 299
++ L
Sbjct: 143 LETDYKKLSSPT 154
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-14
Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS-----CYLKAIETRPDFAVAWSNLGC 672
+D + +A + AG QAV + + N + + + + L
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 673 VFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A +++ + PN +D + A
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 58/319 (18%), Positives = 97/319 (30%), Gaps = 56/319 (17%)
Query: 1 MNDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGV---LLLLSSIHFQCRK 57
M+ ++ + L G Q + + L L
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDG--NSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 58 LDKSAHF--STLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KP 107
F + + L+ YS LGN Y G +A++ ++H + L +
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
NL L G ++A L + LG+ RL E + LY
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLT-------LARQLGD------RLSEGRALY 170
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
LGN+ A G+ +N V + A+ + L +
Sbjct: 171 N----LGNVYHAKGKHLGQRNPGKFGDD-VKEALTRAV-------------EFYQENLKL 212
Query: 228 KQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAA 277
+ A NLGN Y G Q A+E+++ +R+ + NL +
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272
Query: 278 LVAAGDMEQAVQAYVTALQ 296
+ G E A + Y L
Sbjct: 273 HIFLGQFEDAAEHYKRTLA 291
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 60/340 (17%), Positives = 109/340 (32%), Gaps = 93/340 (27%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQC 55
D+ L +L + + GDY A +H + L + + G L +
Sbjct: 80 EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139
Query: 56 RKLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQ-----------------L 92
+ D+ L + + A NLGNVY +G+ L
Sbjct: 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199
Query: 93 QEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
A+E Y+ ++L + NL GD + A++ + L+ +
Sbjct: 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-------I 252
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206
+ G+ R E + S+LGN LG+ ++A +
Sbjct: 253 AREFGD------RAAERRAN----SNLGNSHIFLGQFEDAAEHYKR-------------- 288
Query: 207 CNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 262
TLA+ + A++ +LGN Y + A+E + +
Sbjct: 289 -----------------TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 263 L------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ + +L A A G E+A++ LQ
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L + + A NLGN Y G Q A+E+++ +R+ + NL
Sbjct: 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ + G E A + Y L + R A + +LG + E AI
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALA-----VELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324
Query: 686 HFEKAVSLD------PNFLDAYINLGNVLKEARIFDRA 717
+ + +++ A +LGN +RA
Sbjct: 325 YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 35/173 (20%), Positives = 58/173 (33%), Gaps = 36/173 (20%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ L+ YS LGN Y G +A++ ++H + L + NL
Sbjct: 75 IQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G ++A L + + R A NLG V++A+G+
Sbjct: 135 TLKVMGRFDEAAICCERHLTLA-----RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189
Query: 683 ------------AIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
A+ +++ + L + D A NLGN F A
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + A SNLGN + GQ ++A E+Y+ + L + +L
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ A++ + L + + R A A +LG +A G A+
Sbjct: 310 GNTYTLLHEFNTAIEYHNRHLAIA-----QELGDRIGEARACWSLGNAHSAIGGHERALK 364
Query: 686 HFEKAVSL 693
+ E+ + L
Sbjct: 365 YAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 15/144 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK----PDFIDGYINLAAALVAA 632
+ + G G + + ++ A++ Y L A
Sbjct: 40 GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL 99
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
GD +A+Q + L K++ R A + NLG G A E+ ++
Sbjct: 100 GDYNKAMQYHKHDLTLA-----KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT 154
Query: 693 LDPNFLD------AYINLGNVLKE 710
L D A NLGNV
Sbjct: 155 LARQLGDRLSEGRALYNLGNVYHA 178
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQ-- 71
G +E A H + L + L + + + + H LAI Q
Sbjct: 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336
Query: 72 --NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 105
A A +LGN + G + AL+ ++L
Sbjct: 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 11/89 (12%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G ++ Q + + + G G+ + F+ A+
Sbjct: 22 GSGGGGTNSHDGNSQQG-----SGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ 76
Query: 693 L----DPNFLDAYINLGNVLKEARIFDRA 717
Y LGN +++A
Sbjct: 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 38/266 (14%), Positives = 81/266 (30%), Gaps = 67/266 (25%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A + L VY+++ + +EA A+ ++ P NLA G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS----- 171
++A AL+ ++PD+ ++L L + G+ +E + Y R+
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY-RRALEIYA 158
Query: 172 ---------------DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTT 216
+L + G+ +A+ L+ E +
Sbjct: 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT---------------RAHEKE 203
Query: 217 LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDG 270
S + + + + + + +++ + K P
Sbjct: 204 FGSVN---------GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254
Query: 271 YINLAAALVAAGDMEQAVQAYVTALQ 296
+L A G +E A A +
Sbjct: 255 LRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 34/264 (12%), Positives = 71/264 (26%), Gaps = 69/264 (26%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQA 132
+ + A+ + A+ PD LA ++A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 133 YVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY----------------- 167
AL +P + ++L L G+ EA+ L
Sbjct: 66 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125
Query: 168 --CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225
++L L + G+ +E + + ++ T L
Sbjct: 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALE---------------IYA-TRLGPDD---- 165
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV---RLK------PDFIDGYINLAA 276
P +A+ +NL + Y ++G+ Q+A Y+ + K D +++
Sbjct: 166 -----PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE 220
Query: 277 ALVAAGDMEQAVQAYVTALQYNPL 300
+ + Y
Sbjct: 221 REESKDKRRDSAPYGEYGSWYKAC 244
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 16/154 (10%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A+ +NL + + +G+ +E YR A + P+ NLA+ + G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
+ A Y L D W + ++ + + + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFG--SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241
Query: 694 D------PNFLDAYINLGNVLKEARIFDRANTLF 721
P +LG + + + A+TL
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 36/165 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A +NL +Y +RG+ +EA + A +R K PD NLA G
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
E+ Y +A+E P+ A +NL + QG+ A
Sbjct: 142 KAEEVE-----------YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 686 HFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++ ++ + + +++ + +
Sbjct: 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 35/164 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P +A + L VY+++ + +EA A+ ++ P NLA G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
++A +A+E R PD A +NL + QG+ +
Sbjct: 100 KYKEAE-----------PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Query: 686 HFEKAVSL--------DPNFLDAYINLGNVLKEARIFDRANTLF 721
++ +A+ + DPN NL + + + A TL+
Sbjct: 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAV---RLK------PDFIDGYINLAAALVAA 632
P +A+ +NL + Y ++G+ Q+A Y+ + K D +++ +
Sbjct: 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+ Y KA P +LG ++ QG++ A + A
Sbjct: 226 DKRRDSAPYGEYGSWY------KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 21/149 (14%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQA 641
+ + A+ + A+ PD LA ++A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 642 YVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------ 694
AL K + + P A +NL ++ +G+ A ++A+ +
Sbjct: 66 LNDALAI----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 695 --PNFLDAYINLGNVLKEARIFDRANTLF 721
P+ NL + + + +
Sbjct: 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYY 150
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 125
N + + + + + +++ + K P +L A G
Sbjct: 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267
Query: 126 MEQAVQAYVTALQ 138
+E A A +
Sbjct: 268 LEAAHTLEDCASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 634
N + + + + + +++ + K P +L A G
Sbjct: 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267
Query: 635 MEQAVQAYVTALQ 647
+E A A +
Sbjct: 268 LEAAHTLEDCASR 280
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 97.5 bits (244), Expect = 1e-24
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE---- 64
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
Y KA+E P+ A A NLG QG
Sbjct: 65 -------YYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 90.5 bits (226), Expect = 3e-22
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 136 ALQYNPDLYCVRSDLGNLLKALG 158
AL+ +P+ + +LGN + G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 80.9 bits (201), Expect = 9e-19
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + + NL A GD ++A++ Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 294 ALQYNP 299
AL+ +P
Sbjct: 69 ALELDP 74
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 75.5 bits (187), Expect = 8e-17
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 33/110 (30%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
LGN G DEA Y +K A++ +P
Sbjct: 15 LGNAYYKQGDYDEAIE-------------------YY--QK------------ALELDPN 41
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 2e-15
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 40 NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 99
N G ++ D++ + A++ +P AEA+ NLGN Y ++G EA+E Y
Sbjct: 13 YNLGNAY------YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 100 RHAVRLKPDFIDGYINLAAALVAAG 124
+ A+ L P+ + NL A G
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 2e-15
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
A++ +P AEA+ NLGN Y ++G EA+E Y+ A+ L P+ + NL A G
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 67.4 bits (166), Expect = 5e-14
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ A AW NLG + QG+ AI +++KA+ LDPN +A+ NLGN + +D A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 38/265 (14%), Positives = 80/265 (30%), Gaps = 65/265 (24%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A + L VY+++ + ++A A+ ++ P NLA G
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY--------- 167
++A AL+ +PD+ ++L L + G+ +E + Y
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185
Query: 168 ----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
+++L + G+ +A+ L+ E + +
Sbjct: 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE---------------F 230
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGY 271
S + + + +G+ ++ + K P
Sbjct: 231 GSVD---------DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL 281
Query: 272 INLAAALVAAGDMEQAVQAYVTALQ 296
NL A G E A A++
Sbjct: 282 KNLGALYRRQGKFEAAETLEEAAMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 69/272 (25%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P NL Y +G+ + A+ + A+ PD LA
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 125 DMEQAVQAYVTALQ--------YNPDLYCVRSDLGNLLKALGRLDEAKDLY--------- 167
+ A AL +P + ++L L G+ EA+ L
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 168 ----------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
++L L + G+ +E + + ++ + T L
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE---------------IYQ-TKL 187
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA---VRLK------PDFI 268
+ A+ +NL + Y ++G+ ++A Y+ + +
Sbjct: 188 GPDDPNV---------AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238
Query: 269 DGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
+++ G + Y
Sbjct: 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 7e-15
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P +A+ +NL + + +G+ +E Y+ A+ + P+ NLA+ + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 634 DMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+QA Y L + + + W + +G+ E
Sbjct: 210 KFKQAETLYKEILT---RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266
Query: 693 LD------PNFLDAYINLGNVLKEARIFDRANTLF 721
P NLG + + F+ A TL
Sbjct: 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 49/200 (24%)
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 124
P +A+ +NL + + +G+ +E Y+ A+ + P+ NLA+ + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLD 184
+QA Y L + G + + + G+
Sbjct: 210 KFKQAETLYKEILT------------RAHEREFG--SVDDENKPIWMHAEEREECKGKQK 255
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+ + K PT + NLG +Y
Sbjct: 256 DGTSFGEYGGW---YKA-------CKVDSPTVTTT-----------------LKNLGALY 288
Query: 245 KERGQLQEALENYRHAVRLK 264
+ +G+ + A A+R +
Sbjct: 289 RRQGKFEAAETLEEAAMRSR 308
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 36/165 (21%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA--VRLK------PDFIDGYINLAAALVAAG 633
P +A +NL +Y +RG+ +EA + A +R K PD NLA G
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETR--------PDFAVAWSNLGCVFNAQGEIWLAIH 685
E+ Y +A+E P+ A +NL + QG+ A
Sbjct: 168 KYEEVE-----------YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216
Query: 686 HFEKAVSL---------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++ ++ D +++ + +
Sbjct: 217 LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 21/157 (13%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
P NL Y +G+ + A+ + A+ PD LA
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83
Query: 634 DMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
+ A AL K + + P A +NL ++ +G+ A ++A+
Sbjct: 84 KYKDAANLLNDALA----IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139
Query: 693 LD--------PNFLDAYINLGNVLKEARIFDRANTLF 721
+ P+ NL + + ++ +
Sbjct: 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 14/121 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHA---VRLK------PDFIDGYINLAAALVAA 632
P +A+ +NL + Y ++G+ ++A Y+ + + +++
Sbjct: 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G + Y P NLG ++ QG+ A E A+
Sbjct: 252 GKQKDGTSFGEYGGWYK-----ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
Query: 693 L 693
Sbjct: 307 S 307
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGD 634
+ + + + +G+ ++ + K P NL A G
Sbjct: 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293
Query: 635 MEQAVQAYVTALQ 647
E A A++
Sbjct: 294 FEAAETLEEAAMR 306
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 6e-24
Identities = 53/315 (16%), Positives = 93/315 (29%), Gaps = 60/315 (19%)
Query: 11 LLELAHREYQAGDYESAERH---CMQLWRQETNNTGVLLL-LSSIHFQCRKLDK--SAHF 64
L R ++GD + +Q+ ++ + L + +F K H
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 65 STLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYI 114
L + + A+A NLGN K G EA+ + + + K
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG-------RLDEAKDLY 167
NL A G T +++ + + L R + +
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAF- 186
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
+LGN LG +A H + + + +
Sbjct: 187 ---GNLGNTHYLLGNFRDAVIAHEQRLL---IAKE------------------------F 216
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAA 281
AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276
Query: 282 GDMEQAVQAYVTALQ 296
D E+A+ ++ L
Sbjct: 277 QDYEKAIDYHLKHLA 291
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 46/260 (17%), Positives = 78/260 (30%), Gaps = 52/260 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 131
+ G + G + + + AV++ Y L A D +A++
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 132 AYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------------C 168
+ L +LGN LK LG DEA
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV--QNAIVCNYGGRKPTTLESAHFSTLA 226
+LGN+ A G+ P ++ Q A+ + L+
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV-------------DLYEENLS 171
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 276
+ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231
Query: 277 ALVAAGDMEQAVQAYVTALQ 296
A + G+ E A + Y L
Sbjct: 232 AYIFLGEFETASEYYKKTLL 251
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-18
Identities = 56/323 (17%), Positives = 98/323 (30%), Gaps = 96/323 (29%)
Query: 22 GDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQN- 72
DY A H + L R + G L + D+ L I +
Sbjct: 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116
Query: 73 ---PLLAEAYSNLGNVYKERGQ--------------------LQEALENYRHAVRL---- 105
A A NLGNVY +G+ LQ A++ Y + L
Sbjct: 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176
Query: 106 --KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
+ + NL G+ AV A+ L + + G+ + E
Sbjct: 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-------IAKEFGD------KAAER 223
Query: 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
+ S+LGN LG + A + +
Sbjct: 224 RAY----SNLGNAYIFLGEFETASEYYKK------------------------------- 248
Query: 224 TLAIKQN----PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYIN 273
TL + + + A++ +LGN Y ++A++ + + + + +
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308
Query: 274 LAAALVAAGDMEQAVQAYVTALQ 296
L A A G+ +QA+ L+
Sbjct: 309 LGNAYTALGNHDQAMHFAEKHLE 331
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + ++ R A +LG + A G A+H
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIA-----QELKDRIGEGRACWSLGNAYTALGNHDQAMH 324
Query: 686 HFEKAVSL 693
EK + +
Sbjct: 325 FAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-15
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 15/136 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 640
+ G + G + + + AV++ Y L A D +A++
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------ 694
+ L + I + A A NLG G AI ++ + +
Sbjct: 65 YHHHDLTLA-----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119
Query: 695 PNFLDAYINLGNVLKE 710
A NLGNV
Sbjct: 120 VGEARALYNLGNVYHA 135
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 8e-15
Identities = 36/168 (21%), Positives = 49/168 (29%), Gaps = 27/168 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
I A+A NLGN K G EA+ + + + K NL
Sbjct: 75 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134
Query: 631 AAGDMEQAVQAYVTALQYNP---------SCYLKA------IETRPDFAVAWSNLGCVFN 675
A G T Y + + R A+ NLG
Sbjct: 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY 194
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
G A+ E+ + + F D AY NLGN F+ A
Sbjct: 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 9e-15
Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 39/176 (22%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ + L+ YS LGN Y +ALE + H + L + NL
Sbjct: 32 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G+ ++A+ L + + + + A A NLG V++A+G+ +
Sbjct: 92 TLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146
Query: 683 ---------------AIHHFEKAVSLD------PNFLDAYINLGNVLKEARIFDRA 717
A+ +E+ +SL A+ NLGN F A
Sbjct: 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 34/189 (17%), Positives = 53/189 (28%), Gaps = 24/189 (12%)
Query: 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCR 56
E ++A + L + ++ H+
Sbjct: 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197
Query: 57 KLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----- 105
AH L I + AYSNLGN Y G+ + A E Y+ + L
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257
Query: 106 -KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALG 158
+ +L D E+A+ ++ L LGN ALG
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317
Query: 159 RLDEAKDLY 167
D+A
Sbjct: 318 NHDQAMHFA 326
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCRKLDK--SAHFSTLAIKQN- 72
G++E+A + + L RQ + S+ + + +K H LAI Q
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296
Query: 73 ---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 106
A +LGN Y G +A+ + +
Sbjct: 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 7e-24
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 13/119 (10%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 641 AYVTALQYNPSCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
CY I D W+ + E L+ +
Sbjct: 62 -----------CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 86.7 bits (216), Expect = 2e-20
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 132 AYVTALQYNPDLYCVR--SDLGNLLKALGRLDEAKDLY 167
Y + D Y + + L+ + + ++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA 99
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 2e-16
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 125
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 126 MEQAVQAYVTALQYNPDLY 144
E + + +
Sbjct: 92 KEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-16
Identities = 16/79 (20%), Positives = 30/79 (37%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
E Y G + + G E+++ + A++L P+ ++ AL E+AV
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 290 AYVTALQYNPLLKKEDGWN 308
Y + +D W
Sbjct: 62 CYNYVINVIEDEYNKDVWA 80
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-15
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 634
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 635 MEQAVQAYVTALQYNPSCY 653
E + + +
Sbjct: 92 KEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-15
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGD 283
AI+ +P ++ + G + +EA++ Y + + + D + + A AL
Sbjct: 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEG 91
Query: 284 MEQAVQAYVTALQYNP 299
E + +
Sbjct: 92 KEVEAEIAEARAKLEH 107
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-09
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
+ G + G +I FEKA+ LDP ++ G L
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN 52
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 2/43 (4%), Positives = 14/43 (32%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
+ + ++ + ++ + + + E +L+
Sbjct: 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 2/43 (4%), Positives = 14/43 (32%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
+ + ++ + ++ + + + E +L+
Sbjct: 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 54/319 (16%), Positives = 92/319 (28%), Gaps = 68/319 (21%)
Query: 11 LLELAHREYQAGDYESAERH---CMQLWRQETNNTGVLLL-LSSIHFQCRKLDK--SAHF 64
L R ++GD + +Q+ ++ + L + +F K H
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 65 STLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYI 114
L + + A+A NLGN K G EA+ + + + K
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL-------GRLDEAKDLY 167
NL A G +++ + + L R + +
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF- 190
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227
+LGN LG +A H + L I
Sbjct: 191 ---GNLGNTHYLLGNFRDAVIAHEQ-------------------------------RLLI 216
Query: 228 KQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAA 277
+ AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276
Query: 278 LVAAGDMEQAVQAYVTALQ 296
D E+A+ ++ L
Sbjct: 277 YTLLQDYEKAIDYHLKHLA 295
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-21
Identities = 47/260 (18%), Positives = 78/260 (30%), Gaps = 52/260 (20%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 131
+ G + G + + + AV++ Y L A D +A++
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 132 AYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------------C 168
+ L +LGN LK LG DEA
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 169 VRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV--QNAIVCNYGGRKPTTLESAHFSTLA 226
+LGN+ A G+ P ++ Q A+ E L+
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF---------YEEN----LS 175
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 276
+ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235
Query: 277 ALVAAGDMEQAVQAYVTALQ 296
A + G+ E A + Y L
Sbjct: 236 AYIFLGEFETASEYYKKTLL 255
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 9e-19
Identities = 43/257 (16%), Positives = 72/257 (28%), Gaps = 75/257 (29%)
Query: 67 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 116
L++ A+ NLGN + G ++A+ + + + K Y NL
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176
A + G+ E A + Y L L R EA+ Y LGN
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLK-------------DRAVEAQSCY----SLGNT 276
Query: 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPL 232
L ++A + H + LAI Q
Sbjct: 277 YTLLQDYEKAIDYHLK-------------------------------HLAIAQELNDRIG 305
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDFIDGYINLAAALV 279
A +LGN Y G +A+ + + + D + L +
Sbjct: 306 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365
Query: 280 AAGDMEQAVQAYVTALQ 296
+ ++L
Sbjct: 366 TNNSIMSENTEIDSSLN 382
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 4e-16
Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 28/170 (16%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 273
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + + R A +LG + A G A+H
Sbjct: 274 GNTYTLLQDYEKAIDYHLKHLAIA-----QELNDRIGEGRACWSLGNAYTALGNHDQAMH 328
Query: 686 HFEKAVSLD-------------PNFLDAYINLGNVLKEARIFDRANTLFY 722
EK + + N D + LG NT
Sbjct: 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 4e-15
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 39/176 (22%)
Query: 576 LAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 627
+ + L+ YS LGN Y +ALE + H + L + NL
Sbjct: 36 VQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL----- 682
L G+ ++A+ L + + + + A A NLG V++A+G+ +
Sbjct: 96 TLKVLGNFDEAIVCCQRHLDIS-----RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 150
Query: 683 ---------------AIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
A+ +E+ +SL D A+ NLGN F A
Sbjct: 151 DVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-14
Identities = 43/277 (15%), Positives = 81/277 (29%), Gaps = 55/277 (19%)
Query: 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQ---LWRQETNNTGVLLLLSSI---HFQCR 56
E ++A + L + ++ H+
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201
Query: 57 KLDK--SAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----- 105
AH L I + AYSNLGN Y G+ + A E Y+ + L
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261
Query: 106 -KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ +L D E+A+ ++ L + +L + R+ E +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA-------IAQELND------RIGEGR 308
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
+ LGN ALG D+A + +++ ++ + G +A
Sbjct: 309 ACWS----LGNAYTALGNHDQAMHFAEKHL-----EISREVGDKSG------ELTAR--- 350
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261
L++ LG Y + ++
Sbjct: 351 ------LNLSDLQMVLGLSYSTNNSIMSENTEIDSSL 381
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 35/168 (20%), Positives = 48/168 (28%), Gaps = 27/168 (16%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
I A+A NLGN K G EA+ + + + K NL
Sbjct: 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 138
Query: 631 AAGDMEQAVQAYVTALQYNP---------SCYLKA------IETRPDFAVAWSNLGCVFN 675
A G Y + + R A+ NLG
Sbjct: 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
G A+ E+ + + F D AY NLGN F+ A
Sbjct: 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 15/133 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQAVQ 640
+ G + G + + + AV++ Y L A D +A++
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------D 694
+ L + I + A A NLG G AI ++ + +
Sbjct: 69 YHHHDLTLA-----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123
Query: 695 PNFLDAYINLGNV 707
A NLGNV
Sbjct: 124 VGEARALYNLGNV 136
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
+K + A++ +LGN Y ++A++ + + + + +L A
Sbjct: 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIE--TRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
A G+ +QA+ L+ + K+ E R + + LG ++ I +
Sbjct: 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378
Query: 689 KAV 691
++
Sbjct: 379 SSL 381
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 30/205 (14%), Positives = 45/205 (21%), Gaps = 54/205 (26%)
Query: 106 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ-YNPDLYCVRSDLGNLLKALGRLDEAK 164
L +GD V + A+Q DL + +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ------------ 52
Query: 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224
LGN L +A H ++ +
Sbjct: 53 --------LGNAYFYLHDYAKALEYHHHDLT---LART---------------------- 79
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAAL 278
I A+A NLGN K G EA+ + + + K NL
Sbjct: 80 --IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137
Query: 279 VAAGDMEQAVQAYVTALQYNPLLKK 303
A G +
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDA 162
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 27/168 (16%)
Query: 22 GDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDK--SAHFSTLAIKQ-- 71
G++E+A + + L RQ + L + + + +K H LAI Q
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Query: 72 --NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDFIDGYINL 116
A +LGN Y G +A+ + + + D + L
Sbjct: 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
+ + ++L R + N+ L +L K
Sbjct: 361 GLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENM--ELMKLTPEK 406
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 13/109 (11%)
Query: 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674
L +GD V + A+Q E + +S LG +
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAY 57
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRA 717
+ A+ + ++L D A NLGN LK FD A
Sbjct: 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 17/89 (19%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------PDF 618
LAI Q A +LGN Y G +A+ + + +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353
Query: 619 IDGYINLAAALVAAGDMEQAVQAYVTALQ 647
D + L + + ++L
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 9e-23
Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 44/238 (18%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A + N G + ++ + AL+ + ++ N+ +M +A +A+
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
++ + L G L + D A + +L +AL +L
Sbjct: 63 SINRDKHLAVAYFQRGMLYYQTEKYDLA---------IKDLKEALIQLRG---------- 103
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
N + L ++ E N+ +Y ++ + ++A E
Sbjct: 104 ------------NQ---------LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142
Query: 256 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313
A +K + I+ A V + + V V L + P ++ + ++
Sbjct: 143 QLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL-FRPNERQVAQLAKKDYL 199
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-22
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+ N+G +Y + EA + + ++ Y + A
Sbjct: 31 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
Query: 639 VQAYVTALQYNPSCYLKA-----IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
++ AL L ++ + N+ ++ + E A A S+
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 694 DPNFLDAYIN 703
+ I+
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-21
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 18/142 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A + N G + ++ + AL+ + ++ N+ +M +A +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEK---- 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS-LDPNFLDAYIN 703
+ ++I AVA+ G ++ + LAI ++A+ L N L Y
Sbjct: 59 -------AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111
Query: 704 LGNVLKEAR---IFDRANTLFY 722
LG K +++ A
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAK 133
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-16
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 8/128 (6%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ N+G +Y + EA + + ++ Y + A
Sbjct: 31 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
Query: 130 VQAYVTALQY-NPDLYCVRSDLGNLLKALGRLDEAKDLY---CVRSDLGNLLKALGRLDE 185
++ AL + LG K L + LY + + KA +L
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFK----LFACEVLYNIAFMYAKKEEWKKAEEQLAL 146
Query: 186 AKNLHTEN 193
A ++ +E
Sbjct: 147 ATSMKSEP 154
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 14/85 (16%), Positives = 31/85 (36%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L ++ E N+ +Y ++ + ++A E A +K + I+ A V +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Query: 636 EQAVQAYVTALQYNPSCYLKAIETR 660
+ V V L + + +
Sbjct: 172 YEPVVIPVGRLFRPNERQVAQLAKK 196
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 12/65 (18%), Positives = 26/65 (40%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L ++ E N+ +Y ++ + ++A E A +K + I+ A V +
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Query: 127 EQAVQ 131
+ V
Sbjct: 172 YEPVV 176
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-21
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
VQ A++ + A A S G F Q ++ LA+ F +++S +
Sbjct: 62 VQFCEKAVEVGR----ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 6e-17
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 130 VQAYVTALQYNPDLYCVRSD-------LGNLLKALGRLDEAKDLY 167
VQ A++ + GN + L A +
Sbjct: 62 VQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--- 108
++ + +K+ AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77
Query: 109 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
A D+ AVQ + +L D
Sbjct: 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-13
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
A A +LGN ++ ++A +Y A+ L P I Y N AA +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
Query: 288 VQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRPVLGLASAIE 343
VQ A++ E KA+ R G A L+ A++
Sbjct: 62 VQFCEKAVEVGR----------ETRADYKLIAKAMSRAGNAFQKQND----LSLAVQ 104
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-13
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---- 617
++ + +K+ AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78
Query: 618 ---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
A D+ AVQ + +L
Sbjct: 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FIDGYINLAA 276
AI+ +P Y+N VY E + E ++ AV + +
Sbjct: 32 DKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91
Query: 277 ALVAAGDMEQAVQAYVTALQYNP 299
A D+ AVQ + +L
Sbjct: 92 AFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 55/163 (33%)
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD---LYCVRSDLGNLLKALGRLDEA 163
D +L A D E+A Y A++ +P Y + + + E
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNK---AAVYFEEKKFAEC 61
Query: 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223
KA+ + T
Sbjct: 62 VQFC---------EKAV------------EVGRET------------------------- 75
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
L+A+A S GN ++++ L A++ + ++ D
Sbjct: 76 ---RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
D A+A +LG Q + A H++KA+ LDP+ + Y N V E + F
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 6e-21
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 128 QAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAK 164
A QA+ + L V +L L+ L R D +
Sbjct: 71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 3e-20
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 601 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660
+Q E + D + L + A+ A++
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-----------LRAALDFD 49
Query: 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD--AYINLGNVLKEAR 712
P ++VAW LG QG+ A +E ++ + D L L+
Sbjct: 50 PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 20/75 (26%), Positives = 27/75 (36%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 637 QAVQAYVTALQYNPS 651
A QA+ + L S
Sbjct: 71 GARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 2e-19
Identities = 19/74 (25%), Positives = 26/74 (35%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ Q LG Y E Q AL + R A+ P + + L L GD
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 286 QAVQAYVTALQYNP 299
A QA+ + L
Sbjct: 71 GARQAWESGLAAAQ 84
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 8e-17
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151
+Q E + D + L + A+ AL ++P LG
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 152 NLLKALGRLDEAKDLYC-------------VRSDLGNLLKALGRLDEAKNLHTEN 193
L+ G A+ + V +L L+ L R D ++ H +
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHHHHH 115
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA 711
+ D + LG + + A+ H A+ DP + A+ LG L+
Sbjct: 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ 66
Query: 712 RIFDRA 717
A
Sbjct: 67 GDRAGA 72
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-09
Identities = 20/168 (11%), Positives = 35/168 (20%), Gaps = 58/168 (34%)
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
M+ + L D L +R LG + D
Sbjct: 1 MQAITERLEAMLAQGTDN------------ML-----------LRFTLGKTYAEHEQFDA 37
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245
A H A+ +P + A+ LG +
Sbjct: 38 AL--------------------------------PHLRA-ALDFDPTYSVAWKWLGKTLQ 64
Query: 246 ERGQLQEALENYRHAVRLKPDFIDG--YINLAAALVAAGDMEQAVQAY 291
+G A + + + D L L + +
Sbjct: 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 250 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
+Q E + D + L + A+ AL ++P
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 33 QLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 92
+ Q T+N + L + + + D + A+ +P + A+ LG + +G
Sbjct: 10 AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69
Query: 93 QEALENYRHAVRLKPDFIDG--YINLAAALVAAGDMEQAVQAY 133
A + + + D L L + +
Sbjct: 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 6e-20
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA+Q Y + + G++ A F A +L
Sbjct: 70 QALQ-----------SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-18
Identities = 19/100 (19%), Positives = 35/100 (35%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA+Q+Y + + LG LD A+ +
Sbjct: 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+Q K D + + A + LG + G ++AL++Y + + +
Sbjct: 27 NQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQY---NPDLYCVRSDLGNLLKALGRLDE 162
+ A + GD++ A + +A P + + G +L+A+ +
Sbjct: 87 RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-17
Identities = 20/148 (13%), Positives = 41/148 (27%), Gaps = 11/148 (7%)
Query: 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666
L D ++ L AG + A + + + A
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-----------YDARY 54
Query: 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726
+ LG + G A+ + +D N + + D A + FY +
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
Query: 727 FMITDEDIDVILERCEAKTEELNKKFEQ 754
+ + R A E + + ++
Sbjct: 115 LAAAQPAHEALAARAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 7e-16
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ K D + + A + LG + G ++AL++Y + + +
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG 671
+ A + GD++ A + +A + +P + G
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAAA--------QPAHEALAARAG 130
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-14
Identities = 12/82 (14%), Positives = 30/82 (36%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
++ + A + LG + G ++AL++Y + + + + A
Sbjct: 36 DAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+ GD++ A + +A
Sbjct: 96 HLQLGDLDGAESGFYSARALAA 117
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-12
Identities = 14/74 (18%), Positives = 27/74 (36%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ E LG + G+ +A + ++ L ++ L A + G E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 286 QAVQAYVTALQYNP 299
QA+Q+Y +
Sbjct: 70 QALQSYSYGALMDI 83
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 9e-11
Identities = 15/98 (15%), Positives = 32/98 (32%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L L +YQAG ++ A++ L + + L L + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
+ + + + G L A + A L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-10
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 11/100 (11%)
Query: 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
L D ++ L AG + A + + + LG ++L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 158 GRLDEAKDLY--CVRSD---------LGNLLKALGRLDEA 186
G ++A Y D LG LD A
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 7e-20
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
AVQ +AI P ++ A+ +G ++ + A+ +++KA+ LDP
Sbjct: 63 AGAVQ-----------DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111
Query: 696 NFLDAYINLGNV---LKEA 711
+ NL L+EA
Sbjct: 112 DNETYKSNLKIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-17
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+ + + HF AI+ NP A + N Y + G A+++ A+ + P +
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK 81
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158
Y + AL + +AV Y AL+ +PD +S+L L
Sbjct: 82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI+ NP A + N Y + G A+++ A+ + P + Y + AL +
Sbjct: 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95
Query: 635 MEQAVQAYVTALQYNPS 651
+AV Y AL+ +P
Sbjct: 96 HVEAVAYYKKALELDPD 112
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-15
Identities = 20/76 (26%), Positives = 34/76 (44%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI+ NP A + N Y + G A+++ A+ + P + Y + AL +
Sbjct: 36 GKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK 95
Query: 284 MEQAVQAYVTALQYNP 299
+AV Y AL+ +P
Sbjct: 96 HVEAVAYYKKALELDP 111
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-12
Identities = 26/101 (25%), Positives = 40/101 (39%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AVQ A+ +P +G L +L + EA Y
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYY 103
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-11
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673
+ + + E AV Y KAIE P AV + N
Sbjct: 7 EDSAEAERLKTEGNEQMKVENFEAAVH-----------FYGKAIELNPANAVYFCNRAAA 55
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
++ G A+ E+A+ +DP + AY +G L A
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEA 99
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
L +++ AE GN + + A+ Y A+ L P + N AAA G+
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 285 EQAVQAYVTALQYNP 299
AVQ A+ +P
Sbjct: 63 AGAVQDCERAICIDP 77
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 8e-07
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV-CNYG------GRKPTTLESAHFST 224
GN + + A + + + I+ + NA+ CN G ++
Sbjct: 17 TEGNEQMKVENFEAAVHFYGKAIE---LNPANAVYFCNRAAAYSKLGNYAGAVQDC---E 70
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
AI +P ++AY +G + EA+ Y+ A+ L PD NL A
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 628
AI +P ++AY +G + EA+ Y+ A+ L PD NL A
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 8e-20
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 12/119 (10%)
Query: 580 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
+ A A + P + L + A+ + P +
Sbjct: 71 IIALNHARMLD-----------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-18
Identities = 19/92 (20%), Positives = 33/92 (35%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ L ++A ++ P EA+ +LG E + A+ HA L P I
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ LA + + A+ + L P
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 9e-18
Identities = 19/89 (21%), Positives = 33/89 (37%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ L ++A ++ P EA+ +LG E + A+ HA L P I
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP 650
+ LA + + A+ + L P
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-17
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
++ P EA+ +LG E + A+ HA L P I + LA + +
Sbjct: 43 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102
Query: 286 QAVQAYVTALQYNP 299
A+ + L P
Sbjct: 103 AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 1/98 (1%)
Query: 71 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ A A +P V + L + A
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 3e-14
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
+++ ++ +A A+ Q P + AW +LG + LA
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEP-----------EREEAWRSLGLTQAENEKDGLA 70
Query: 684 IHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
I A LDP + + L + A
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 229 QNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
NP + E G + L EA + + +P+ + + +L A
Sbjct: 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 288 VQAYVTALQYNP 299
+ A A +P
Sbjct: 71 IIALNHARMLDP 82
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 8e-10
Identities = 12/99 (12%), Positives = 28/99 (28%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+E + + A + ++E L + K + A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 109
+P ++ L + AL + R + +P +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
G + A FE +P +A+ +LG E A
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 16/153 (10%), Positives = 33/153 (21%), Gaps = 56/153 (36%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+++ ++ +A A+ Q P+ EA LG
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPERE-----------------EA------WRSLG 58
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ A A +P
Sbjct: 59 LTQAENEKDGLAIIALNH---------------------------------ARMLDPKDI 85
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
++ L + AL + R + +P +
Sbjct: 86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-06
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618
A +P ++ L + AL + R + +P +
Sbjct: 77 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-19
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 131 QAYVTALQYNPDLYCVRS--DLGNLLKALGRLDEA 163
Y ++ + + +L + L+
Sbjct: 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-19
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 13/110 (11%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 639
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 640 QAYVTALQYNPSCYLKAIETRPDF--AVAWSNLGCVFNAQGEIWLAIHHF 687
Y + IE + S L + HH
Sbjct: 62 D-----------TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-17
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288
++P L + + AL + V PD++ Y +L + A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 289 QAYVTALQYNP 299
Y ++
Sbjct: 62 DTYAQGIEVAR 72
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 6e-16
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
P+ LA + + +A+ + + +ET PD+ + +LG ++
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALA-----------LFEELVETDPDYVGTYYHLGKLYE 52
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLDAYI--NLGNVLKEARIFDRAN 718
AI + + + + L + +A + +
Sbjct: 53 RLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-12
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96
++ + L+ H + ++ ++ +P Y +LG +Y+ + +A+
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
Query: 97 ENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQAVQAY 133
+ Y + + + L A + A +E +
Sbjct: 62 DTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-12
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 35/121 (28%)
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
L A A F ++ +P
Sbjct: 13 LAQEHLKHDNASRAL--------------------------------ALFEE-LVETDPD 39
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQAVQA 290
Y +LG +Y+ + +A++ Y + + + L A + A +E
Sbjct: 40 YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHH 99
Query: 291 Y 291
+
Sbjct: 100 H 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-12
Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI-- 623
++ ++ +P Y +LG +Y+ + +A++ Y + + +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81
Query: 624 NLAAALVAAGDMEQAVQAY 642
L A + A +E +
Sbjct: 82 ELQDAKLKAEGLEHHHHHH 100
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 4e-19
Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 57/221 (25%)
Query: 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------K 106
F+ + + + + A LG VY + EA +++ +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
+ AG+ + A + ++ + + + L L + +
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERE-------LLASLPED-----PLAASANA 110
Query: 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226
Y + + G L A+ + + +L
Sbjct: 111 YE----VATVALHFGDLAGARQEYEK-------------------------------SLV 135
Query: 227 IKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263
Q +A A+ LG++ ++ L EA +++ A +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-17
Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 16/172 (9%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------K 615
FE + + + + A LG VY + EA +++ +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFN 675
+ AG+ + A + ++ + E + + V
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEEREL----LASLPEDPLAASANAYEVATVAL 118
Query: 676 AQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKEARIFDRANTLF 721
G++ A +EK++ D A+ LG++ ++ + A +
Sbjct: 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 18/136 (13%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQ 637
A +G V + G A + L + +A + GD+
Sbjct: 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAG 125
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---- 693
A Q Y +L Y + + + A A+ LG + + + A H+ +A +
Sbjct: 126 ARQEYEKSLVYA-----QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180
Query: 694 --DPNFLDAYINLGNV 707
+ L +
Sbjct: 181 EDSEAVNELMTRLNGL 196
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 34/248 (13%), Positives = 64/248 (25%), Gaps = 65/248 (26%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK--SAHFSTLAIKQ----N 72
++A DY AER L +G +L ++ + D+ ++ + Q +
Sbjct: 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62
Query: 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGD 125
A +G V + G A + L + +A + GD
Sbjct: 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
+ A Q Y +L + ++ A LG+L + L E
Sbjct: 123 LAGARQEYEKSLV-------YAQQADD------QVAIACAF----RGLGDLAQQEKNLLE 165
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLG 241
A+ I + + E + L
Sbjct: 166 AQQHWLR-------------------------------ARDIFAELEDSEAVNELMTRLN 194
Query: 242 NVYKERGQ 249
+
Sbjct: 195 GLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
+ + V G L A + Y ++ + + L ++ +A
Sbjct: 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
Q ++ A +E + L + +
Sbjct: 167 QQHWLRARDI-----FAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 24/176 (13%), Positives = 41/176 (23%), Gaps = 52/176 (29%)
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191
A A Y ++ L + + + LG + + R DEA+
Sbjct: 1 AAFEAHDYALAERQAQALLAH------PATASGARF----MLGYVYAFMDRFDEARASFQ 50
Query: 192 ENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----NPLLAEAYSNLGNVYKER 247
Q + A +G V +
Sbjct: 51 A-------------------------------LQQQAQKSGDHTAEHRALHQVGMVERMA 79
Query: 248 GQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQAVQAYVTALQ 296
G A + L + +A + GD+ A Q Y +L
Sbjct: 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 8e-18
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 11/159 (6%)
Query: 599 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
G L + D ++ +LA +G E A +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHX-----------VFQALCV 49
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
+ + LG A G+ LAIH + +D + L + A
Sbjct: 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109
Query: 719 TLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGE 757
+ +++ + + + R + E + K E E
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 4e-15
Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 11/133 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A+ + Y + GE+ A A L N
Sbjct: 73 LAIHS-----------YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 697 FLDAYINLGNVLK 709
+ V
Sbjct: 122 XPEFXELSTRVSS 134
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 6e-15
Identities = 19/145 (13%), Positives = 44/145 (30%)
Query: 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81
G S L ++ L L+ +Q + + + + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141
LG + GQ A+ +Y + + + A L+ G++ +A A +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
Query: 142 DLYCVRSDLGNLLKALGRLDEAKDL 166
+ + L + K++
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 5e-14
Identities = 16/100 (16%), Positives = 31/100 (31%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A+ +Y + L G L EA+
Sbjct: 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 4e-12
Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ + + + + + LG + GQ A+ +Y + +
Sbjct: 32 YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS------------CYLKAIETRPD 662
+ A L+ G++ +A A + + L+AI+ + +
Sbjct: 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKE 144
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 3e-11
Identities = 11/82 (13%), Positives = 27/82 (32%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
++ + + + LG + GQ A+ +Y + + + A
Sbjct: 39 DAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
L+ G++ +A A +
Sbjct: 99 LLQXGELAEAESGLFLAQELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 11/74 (14%), Positives = 25/74 (33%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ + E +L + G ++A ++ L ++ L A A G +
Sbjct: 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72
Query: 286 QAVQAYVTALQYNP 299
A+ +Y +
Sbjct: 73 LAIHSYSYGAVMDI 86
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSD 149
G L + D ++ +LA +G E A + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 150 LGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKALGRLDEAKN 188
LG +A+G+ D A Y L G L EA++
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES 110
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 39/195 (20%), Positives = 60/195 (30%), Gaps = 58/195 (29%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
+ Y L + L + R EA+ Y LGN L ++A +
Sbjct: 69 SEYYKKTLL-------LARQLKD------RAVEAQSCYS----LGNTYTLLQDYEKAIDY 111
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN----PLLAEAYSNLGNVYK 245
H + LAI Q A +LGN Y
Sbjct: 112 HLK-------------------------------HLAIAQELKDRIGEGRACWSLGNAYT 140
Query: 246 ERGQLQEALENYRHA 260
G +A+
Sbjct: 141 ALGNHDQAMHFAEKH 155
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINL 625
L I + AYSNLGN Y G+ + A E Y+ + L + +L
Sbjct: 36 LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
D E+A+ ++ L + ++ R A +LG + A G A+H
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIA-----QELKDRIGEGRACWSLGNAYTALGNHDQAMH 150
Query: 686 HFEKAVSL 693
EK + +
Sbjct: 151 FAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-16
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ Y L + ++ R A + +LG + + AI + K +++
Sbjct: 69 SEYYKKTLLLA-----RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 699 D------AYINLGNVLKEARIFDRA 717
D A +LGN D+A
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQA 148
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 6e-09
Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 18/138 (13%)
Query: 19 YQAGDYESAERHCMQ---LWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFS--TLAIK 70
Y G++ A Q + ++ + L + + + + ++ + TL +
Sbjct: 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79
Query: 71 Q----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAAL 120
+ + A++ +LGN Y ++A++ + + + + +L A
Sbjct: 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139
Query: 121 VAAGDMEQAVQAYVTALQ 138
A G+ +QA+ L+
Sbjct: 140 TALGNHDQAMHFAEKHLE 157
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 287
A+ NLGN + G ++A+ + + + K Y NL A + G+ E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 288 VQAYVTALQ 296
+ Y L
Sbjct: 69 SEYYKKTLL 77
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A++ + E A A++ +G + + + AIH + K+++ D
Sbjct: 64 AIEVGR----ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKC 118
Query: 705 GNVLKEARIFDR 716
K + +R
Sbjct: 119 QQAEKILKEQER 130
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-12
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 136 ALQYNPDLYCVRSD-------LGNLLKALGRLDEAKDLY 167
A++ + +GN + +A Y
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY 102
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-11
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--- 108
++ + D + A + +P +N VY E+G + E A+ + +
Sbjct: 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73
Query: 109 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
Y + + + A+ Y +L +
Sbjct: 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 8e-11
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---- 617
++ + D + A + +P +N VY E+G + E A+ + +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74
Query: 618 ---FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
Y + + + A+ Y +L + +
Sbjct: 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-10
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FIDGYINLAA 276
A + +P +N VY E+G + E A+ + + Y +
Sbjct: 28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87
Query: 277 ALVAAGDMEQAVQAYVTALQYNP 299
+ + A+ Y +L +
Sbjct: 88 SYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGA 327
A++ E + KA R G
Sbjct: 64 AIEVGR----------ENREDYRQIAKAYARIGN 87
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-16
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA Y A + + G A FE + +
Sbjct: 88 QAAD-----------LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 3e-16
Identities = 17/100 (17%), Positives = 33/100 (33%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA Y A + Y G L +AK+ +
Sbjct: 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 12/92 (13%), Positives = 34/92 (36%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
+ +++++ F + + L +Y+ + Q Q+A + Y A L +
Sbjct: 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ + +A + + +Q++ D
Sbjct: 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 6e-14
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ +++++ F + + L +Y+ + Q Q+A + Y A L +
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP--------SCYLKAIE 658
+ + +A + + +Q++ YL AI+
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-14
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 14/135 (10%)
Query: 590 NLGNVYKERGQLQEALEN---YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
N+ + +A+ + + + D +D + A G +E+A +
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706
Y+ L ++ + + A + A +L N + G
Sbjct: 64 IYDF-----------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Query: 707 VLKEARIFDRANTLF 721
+ +A F
Sbjct: 113 CQLRLKAPLKAKECF 127
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 12/82 (14%), Positives = 29/82 (35%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
E+ F + + L +Y+ + Q Q+A + Y A L + +
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+ +A + + +Q++
Sbjct: 114 QLRLKAPLKAKECFELVIQHSN 135
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 12/74 (16%), Positives = 24/74 (32%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
+ + + + +G+++EA +R +D + LAA +
Sbjct: 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87
Query: 286 QAVQAYVTALQYNP 299
QA Y A
Sbjct: 88 QAADLYAVAFALGK 101
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 81 NLGNVYKERGQLQEALEN---YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137
N+ + +A+ + + + D +D + A G +E+A +
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 138 QYNPDLYCVRSDLGNLLKALGRLDEAKDLY--CVRSD---------LGNLLKALGRLDEA 186
Y+ L + + + +A DLY G L +A
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 187 K 187
K
Sbjct: 124 K 124
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 6e-16
Identities = 48/316 (15%), Positives = 78/316 (24%), Gaps = 47/316 (14%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTG-----VLLLLSSIHFQCRKLDKS------A 62
A G+ + AER + +L + +L +S
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 63 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYI 114
+ + +G LQ A E A +L P
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYN-----PDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
A L A +++A + + ++ + L A G LD A+
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ--- 196
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT---TLESAHFSTLA 226
L L LG + + I G K L A
Sbjct: 197 ---LNRLENLLGNGKYHSDWIS------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247
Query: 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR------LKPDFIDGYINLAAALVA 280
N L + N+ G+ + A L D + L
Sbjct: 248 --NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305
Query: 281 AGDMEQAVQAYVTALQ 296
AG A + + AL+
Sbjct: 306 AGRKSDAQRVLLDALK 321
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 4e-12
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 52/238 (21%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVAA 123
I+++ + AE + V G EA + A+ P I L L
Sbjct: 7 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 66
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
G++ +++ Q + AL L +L A G L
Sbjct: 67 GELTRSLALMQQTEQ-------MARQHDVWHYALWSL----------IQQSEILFAQGFL 109
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243
A + + + ++Q P+ +
Sbjct: 110 QTAWETQEK-----------------------AFQLIN--EQHLEQLPMHEFLVRIRAQL 144
Query: 244 YKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+L EA + R + + + L +A GD++ A
Sbjct: 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 2e-11
Identities = 37/303 (12%), Positives = 77/303 (25%), Gaps = 68/303 (22%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAE---RHCMQLWRQETNNTGV---LLLLSSIHFQC 55
+ L + G+ + + Q+ RQ L+ S I F
Sbjct: 47 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106
Query: 56 RKLDKS--------AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK- 106
L + + ++Q P+ + +L EA + R + +
Sbjct: 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166
Query: 107 ----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ------YNPDLYC-VRSDLGNLLK 155
+ L +A GD++ A Y+ D +
Sbjct: 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226
Query: 156 ALGRLDEAKDLYCVRSD---------------LGNLLKALGRLDEAKNLHTENIKPVTMK 200
G A + + + LG + A+ +
Sbjct: 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV----------- 275
Query: 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 260
LE + + +++ L L +Y + G+ +A A
Sbjct: 276 ----------------LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
Query: 261 VRL 263
++L
Sbjct: 320 LKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 6e-08
Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 14/151 (9%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDM 635
A S LG V +G+L +L + ++ + I + L A G +
Sbjct: 50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 109
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-- 693
+ A + A Q +L+ + P + A + A + +
Sbjct: 110 QTAWETQEKAFQLINEQHLEQL---PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166
Query: 694 ---DPNFLDAYINLGNVLKEARIFDRANTLF 721
L L D A +
Sbjct: 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQL 197
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 18/157 (11%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVAA 632
I+++ + AE + V G EA + A+ P I L L
Sbjct: 7 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 66
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G++ +++ Q + + + + AQG + A EKA
Sbjct: 67 GELTRSLALMQQTEQMA-----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 121
Query: 693 L--------DPNFLDAYINLGNVLKEARIFDRANTLF 721
L P +L D A
Sbjct: 122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 9e-07
Identities = 27/218 (12%), Positives = 55/218 (25%), Gaps = 65/218 (29%)
Query: 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
+ + ++ + +A+R A + G+ ++A + AL+ P
Sbjct: 3 EIKDIREDTMHAEFNALR------------AQVAINDGNPDEAERLAKLALEELPP---- 46
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206
S LG +L G L + L
Sbjct: 47 --------------GWFYSRIVATSVLGEVLHCKGELTRSLAL----------------- 75
Query: 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-- 264
++ + + +G LQ A E A +L
Sbjct: 76 ----------MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 125
Query: 265 ------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
P A L A +++A + + ++
Sbjct: 126 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 163
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 14/120 (11%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG 633
+ + +G LQ A E A +L P A L A
Sbjct: 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 149
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
+++A + + ++ S + L A+G++ A + +L
Sbjct: 150 RLDEAEASARSGIEVLSSYQP------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 15/140 (10%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAG 633
+Q P+ + +L EA + R + + + L +A G
Sbjct: 129 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG 188
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
D++ A L + D+ + A + G+ A +
Sbjct: 189 DLDNARSQLNRLEN-----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243
Query: 693 LD----PNFLDAYINLGNVL 708
+ + N+
Sbjct: 244 PEFANNHFLQGQWRNIARAQ 263
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----KPDFIDGYINLAAALVAAGDMEQ 637
++ A ++ G A RH + + N+A A + G+ E
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
A + +++ D L ++ G A A+ L
Sbjct: 272 AEIVLEELNE-----NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVR------LKPDFIDGYINLAAALVAAGD 634
N L + N+ G+ + A L D + L AG
Sbjct: 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 635 MEQAVQAYVTALQ 647
A + + AL+
Sbjct: 309 KSDAQRVLLDALK 321
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 15/144 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 634
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 635 -MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
Q AL + + A L Q AI ++K + L
Sbjct: 96 MTAQTRAMIDKALALD-----------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 694 DPNFLDAYINLGNVLKEARIFDRA 717
+ ++ + + + A++ R
Sbjct: 145 NSPRINRTQLVES-INMAKLLQRR 167
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 125
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 126 -MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Q AL + + L + +A +L+
Sbjct: 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 58/221 (26%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIK 195
ALQ + + + L +L + +D+A
Sbjct: 70 ALQLRGENAELYAALATVLYYQA-------------SQHMTAQTRAMIDKA--------- 107
Query: 196 PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 255
+ + A L + + +A+E
Sbjct: 108 -------------------------------LALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 256 NYRHAVRLKPDFIDGY-----INLAAALVAAGDMEQAVQAY 291
++ + L I+ IN+A L D+E +
Sbjct: 137 LWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHHHH 177
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-13
Identities = 21/136 (15%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR- 68
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL---AIHHFEKAVSLDPNFLDAY 701
+A++ R + A ++ L V Q + +KA++LD N + A
Sbjct: 69 ----------QALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
Query: 702 INLGNVLKEARIFDRA 717
+ L + + +A
Sbjct: 119 MLLASDAFMQANYAQA 134
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-- 283
I+ NP +E ++ LG Y + +L YR A++L+ + + Y LA L
Sbjct: 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95
Query: 284 -MEQAVQAYVTALQYNP 299
Q AL +
Sbjct: 96 MTAQTRAMIDKALALDS 112
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 3/135 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ H+ + E+ + R N+ LL + S A++
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 71 QNPLLAEAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
AE Y+ L V + + A+ L + I + LA+ +
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 128 QAVQAYVTALQYNPD 142
QA++ + + N
Sbjct: 133 QAIELWQKVMDLNSP 147
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 8/132 (6%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTL-- 67
L DY ++ Q + N + L+++ + +A +
Sbjct: 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMID 105
Query: 68 -AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY-----INLAAALV 121
A+ + A L + + +A+E ++ + L I+ IN+A L
Sbjct: 106 KALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQ 165
Query: 122 AAGDMEQAVQAY 133
D+E +
Sbjct: 166 RRSDLEHHHHHH 177
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
+ + + E +QA ++ NP + W+ LG + Q + +
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANP-----------QNSEQWALLGEYYLWQNDYSNS 63
Query: 684 IHHFEKAVSLDPNFLDAYINLGNVLKEA---RIFDRANTLF 721
+ + +A+ L + Y L VL + + +
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 21/188 (11%), Positives = 46/188 (24%), Gaps = 59/188 (31%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+ + + E +QA ++ NP ++ LG
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQ-------------------NSEQWAL----LG 51
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234
+ + + A++ A
Sbjct: 52 EYYLWQNDYSNSLLAYRQ---------------------------------ALQLRGENA 78
Query: 235 EAYSNLGNVYKERGQLQ---EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
E Y+ L V + + A+ L + I + LA+ + QA++ +
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138
Query: 292 VTALQYNP 299
+ N
Sbjct: 139 QKVMDLNS 146
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY-----INLAAALVA 631
A+ + A L + + +A+E ++ + L I+ IN+A L
Sbjct: 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166
Query: 632 AGDMEQAVQAY 642
D+E +
Sbjct: 167 RSDLEHHHHHH 177
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 10/66 (15%), Positives = 24/66 (36%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
+ + + + + + L+ + +R P + + L + D ++ AY
Sbjct: 10 YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69
Query: 294 ALQYNP 299
ALQ
Sbjct: 70 ALQLRG 75
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 1e-15
Identities = 32/234 (13%), Positives = 63/234 (26%), Gaps = 21/234 (8%)
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
L AY +++ + AVR+ A L + + V
Sbjct: 39 FLYRAYLAQRKYGVVLDEIKPSSAPELQAVRM----------FAEYLASHSRRDAIVAEL 88
Query: 134 VTALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLYCVRSDL------GNLLKALGRLDE 185
+ + D+ ++ D A L +L L RLD
Sbjct: 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDL 148
Query: 186 AKNLHTE--NIKPVTMKVQNAIVCNYGGRKPTTLESA-HFSTLAIKQNPLLAEAYSNLGN 242
A+ + + Q A L+ A + + +
Sbjct: 149 ARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
+ +G+ + A + A+ + INL G + Y++ L+
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 7e-12
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
L E + + + +L A + + D + A +AAG
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG- 179
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
E+ AY + + + + + AQG A ++A+ D
Sbjct: 180 EKLQDAY--------YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 696 NFLDAYINLGNVL 708
+ INL +
Sbjct: 232 GHPETLINLVVLS 244
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 8e-12
Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 7/159 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL A + + ++A R + ++ + + I + +LD +
Sbjct: 104 LLMAASIYFYDQNPDAALRTL-----HQGDSLECMAMTVQILLKLDRLDLARKELKKMQD 158
Query: 71 QNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
Q+ L + + ++ +LQ+A ++ + AA +A G E
Sbjct: 159 QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEA 218
Query: 129 AVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A AL + +L L + LG+ E + Y
Sbjct: 219 AEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 17/159 (10%), Positives = 42/159 (26%), Gaps = 7/159 (4%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC--RKLDKSAHFSTLAI 69
+ + A + ++ Q+ + T L + + KL + +
Sbjct: 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA 193
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ + + +G+ + A + A+ + INL G +
Sbjct: 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253
Query: 130 VQAYVTAL-QYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Y++ L + + D Y
Sbjct: 254 TNRYLSQLKDAHRSH----PFIKEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 16/152 (10%)
Query: 574 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 633
++ L + + ++ +LQ+A ++ + AA +A G
Sbjct: 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214
Query: 634 DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF-EKAVS 692
E A +A++ NL + G+ + + +
Sbjct: 215 RWEAAEG-----------VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724
+ + + + FDR + S
Sbjct: 264 AHRS----HPFIKEYRAKENDFDRLVLQYAPS 291
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 11/83 (13%), Positives = 26/83 (31%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
KL + + + + + +G+ + A + A+ + IN
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 625 LAAALVAAGDMEQAVQAYVTALQ 647
L G + Y++ L+
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLK 262
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 17/156 (10%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 630
+ + AE + + Y Q ++ + A+ + I +A
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
++A+ AL+ I+ A++ N+ ++ G+ +A+ HF+KA
Sbjct: 194 DFKHYDKALPHLEAALE-----LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248
Query: 691 VSL-----DPNFLDAYINLGNVLKEARIFDRANTLF 721
+ L L +A +A
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 31/266 (11%), Positives = 67/266 (25%), Gaps = 55/266 (20%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 121
+ + AE + + Y Q ++ + A+ + I +A
Sbjct: 134 VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193
Query: 122 AAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-------- 167
++A+ AL+ + + ++ N G A + +
Sbjct: 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253
Query: 168 --------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLES 219
V L L G+ +A E + +
Sbjct: 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD-HITARSH---------------- 296
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279
K L + + ++ + L + L + AA
Sbjct: 297 --------KFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKNLHAYIEACARSAAAVFE 347
Query: 280 AAGDMEQAVQAYVTALQYNPLLKKED 305
++ EQA Y L+ + K +
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDILKGE 373
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD 125
L + G ++ + EA+ YR A + + + + +A A
Sbjct: 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ 156
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
++ + AL + L + D + KAL L+
Sbjct: 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIA---------GNYDDFKHYDKALPHLEA 207
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245
A L + I+ + +A + N+ N Y
Sbjct: 208 ALELAMD----------------------------------IQNDRFIAISLLNIANSYD 233
Query: 246 ERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
G Q A+E+++ A ++ L+ L AG ++A Q L +
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 32/264 (12%), Positives = 69/264 (26%), Gaps = 67/264 (25%)
Query: 19 YQAGDYESAERHCMQ-------LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK- 70
Y + H +Q L +++ + + DK+ A++
Sbjct: 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL 211
Query: 71 -----QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAAL 120
+ +A + N+ N Y G Q A+E+++ A ++ L+ L
Sbjct: 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
AG ++A Q L + L L +Y D + L
Sbjct: 272 CKAGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQ------AVYKETVDERKIHDLL 323
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
++ + +
Sbjct: 324 SYFEKKNLH-----------------------------------------AYIEACARSA 342
Query: 241 GNVYKERGQLQEALENYRHAVRLK 264
V++ ++A YR ++ +
Sbjct: 343 AAVFESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 9/150 (6%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-----PDFIDGYINLAAALVAA 632
I+ + +A + N+ N Y G Q A+E+++ A ++ L+ L A
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G ++A Q L + + K + F + + +I + +FEK +
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFL---QAVYKETVDERKIHDLLSYFEKK-N 330
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFY 722
L + V + + F++A +
Sbjct: 331 LHAYIEACARSAAAVFESSCHFEQAAAFYR 360
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 17/166 (10%), Positives = 51/166 (30%), Gaps = 27/166 (16%)
Query: 578 IKQNPLLAEAYSNLGNVYK-------------ERGQLQEALENYRHAVRLKPDFIDGYIN 624
++++ L YS + ++ R + E LE + + Y
Sbjct: 45 MEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL 104
Query: 625 LAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
+ + +A+ Y A + L + + A + + + +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKE-----LPFVSDDIEKAEFHFKVAEAYYHMKQTHV 159
Query: 683 AIHHFEKAVSL-------DPNFLDAYINLGNVLKEARIFDRANTLF 721
+++H +A+ + + + + + + +D+A
Sbjct: 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL 205
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 6/114 (5%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQ 637
K LL + L + GQ Q+A + + Y L L A
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
+ L Y + + VF + A + K +
Sbjct: 315 DERKIHDLLSY-----FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 4e-15
Identities = 31/234 (13%), Positives = 54/234 (23%), Gaps = 57/234 (24%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A Y+ +K QL++A + Y + L M +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
VQ A + G D A L G+L E +L
Sbjct: 96 VQYIEKAS--------------VMYVENGTPDTA----------AMALDRAGKLMEPLDL 131
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
A+ + A ++ AE + + +
Sbjct: 132 ------------SKAVHL---------YQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170
Query: 250 LQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
EA + + + P I + D A + +
Sbjct: 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 18/149 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A Y+ +K QL++A + Y + L M +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF- 697
VQ A PD A + ++ A+H +++A ++ N
Sbjct: 96 VQYIEKASVMYVENG------TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEE 149
Query: 698 -----LDAYINLGNVLKEARIFDRANTLF 721
+ +L + FD A
Sbjct: 150 RLRQAAELIGKASRLLVRQQKFDEAAASL 178
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 13/122 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG------YINLAAALVAAGDMEQA 638
A A G + E L +A+ Y+ A + + + LV ++A
Sbjct: 116 AMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ K +E P V + + A ++ S+ P F
Sbjct: 175 AASLQKEKSMY-----KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFS 228
Query: 699 DA 700
+
Sbjct: 229 GS 230
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 6e-15
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 576 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 635 MEQAVQAYVTALQYNPS-----CYLKAIETRPD 662
EQ V+ + + Y +AI D
Sbjct: 77 YEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-14
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 90 GQLQEALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146
G +A+ Y A+ D + Y+ L + G+ +A ++ P+ +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH 190
R +L LGR ++ + LLK + + + +
Sbjct: 64 RVFYAMVLYNLGRYEQG---------VELLLKIIAETSDDETIQ 98
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 7e-14
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 67 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 126 MEQAVQAYVTALQYNPD 142
EQ V+ + + D
Sbjct: 77 YEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 1e-13
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 225 LAIKQN-PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+A LAE Y LG+ ++ G+ ++A + V+ P+ + A L G
Sbjct: 17 IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76
Query: 284 MEQAVQAYVTALQYNP 299
EQ V+ + +
Sbjct: 77 YEQGVELLLKIIAETS 92
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-12
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 599 GQLQEALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655
G +A+ Y A+ D + Y+ L + G+ +A +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAE-----------AVLAN 52
Query: 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
++ P+ V G + K ++ +
Sbjct: 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 8/102 (7%)
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G QAV Y A+ D A + LG F GE A V
Sbjct: 4 GLEAQAVPYYEKAIASGLQ--------GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55
Query: 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDI 734
PN + VL +++ L DE I
Sbjct: 56 QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 53/143 (37%)
Query: 124 GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRL 183
G QAV Y A+ KDL LG+ + LG
Sbjct: 4 GLEAQAVPYYEKAIASGLQ--------------------GKDLAECYLGLGSTFRTLGEY 43
Query: 184 DEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243
+A+ + +KQ P V
Sbjct: 44 RKAEAVLAN---------------------------------GVKQFPNHQALRVFYAMV 70
Query: 244 YKERGQLQEALENYRHAVRLKPD 266
G+ ++ +E + D
Sbjct: 71 LYNLGRYEQGVELLLKIIAETSD 93
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 3/90 (3%)
Query: 22 GDYESAERHC---MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
G A + + Q + L L S + K+ +KQ P
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPD 108
V G+ ++ +E + D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 32/272 (11%), Positives = 82/272 (30%), Gaps = 40/272 (14%)
Query: 18 EYQAGDYESAERH---CMQLWRQETNNTGV---LLLLSSIHFQCRKLDKSAHFSTLAIK- 70
E +Y SA + + +S ++ ++ S ++ A +
Sbjct: 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI 172
Query: 71 ------QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAA 118
N L + +S + + Q ++A+ +++ A + N+
Sbjct: 173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232
Query: 119 ALVAAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172
+ E A+ + A+ P L + + LG++D+A + +
Sbjct: 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH----- 287
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
K + +A + + + G ++ +
Sbjct: 288 ----SKGMAYSQKAGD------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
L + ++ Y ER Q+A + +++
Sbjct: 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 630
+K AE + + Y Q +++ R A + + + A +
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
E A+ + A +A + N+G N+Q + AI +F++A
Sbjct: 196 DLKQYEDAISHFQKAYS-----MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250
Query: 691 VSLD------PNFLDAYINLGNVLKEARIFDRANTLF 721
+++ P+ AY + + + D+A+
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 30/267 (11%), Positives = 72/267 (26%), Gaps = 56/267 (20%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALV 121
+K AE + + Y Q +++ R A + + + A +
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195
Query: 122 AAGDMEQAVQAYVTALQ------YNPDLYCVRSDLGNLLKALGRLDEAKDLY-------- 167
E A+ + A + ++G + + ++A +
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255
Query: 168 ---------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLE 218
+ + LG++D+A H++ + G
Sbjct: 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA---------YSQKAGD------- 299
Query: 219 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
E +L + +Q + + L D D I++A
Sbjct: 300 ---------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKMLYADLEDFAIDVAKYY 349
Query: 279 VAAGDMEQAVQAYVTALQYNPLLKKED 305
+ ++A ++ Q L++
Sbjct: 350 HERKNFQKASAYFLKVEQVRQLIQGGV 376
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 27/252 (10%), Positives = 65/252 (25%), Gaps = 57/252 (22%)
Query: 69 IKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------YINLAAAL 120
+ L E Y N G ++ + A++ ++ A D + ++ +
Sbjct: 94 QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY 153
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
++ A + + L DL A+
Sbjct: 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA---------TNFLDLKQYEDAI 204
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
+A ++ KQ L+ N+
Sbjct: 205 SHFQKAYSMAEA----------------------------------EKQPQLMGRTLYNI 230
Query: 241 GNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
G + Q ++A+ ++ A+ + P Y + G +++A + +
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290
Query: 295 LQYNPLLKKEDG 306
+ Y+
Sbjct: 291 MAYSQKAGDVIY 302
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 10/152 (6%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALV 630
A KQ L+ N+G + Q ++A+ ++ A+ + P Y +
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY 275
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
G +++A + + + Y+ + +F +L + I E
Sbjct: 276 KLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL---KSLYLSGPDEEAIQGFFDFLESK 332
Query: 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
L + D I++ E + F +A+ F
Sbjct: 333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFL 363
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 576 LAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALV 630
+A+ + P L +AY + ++ + G++ +A E + + D Y++ L
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310
Query: 631 AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690
+ +A + L++ D ++ ++ + A +F K
Sbjct: 311 SLYLSGPDEEAIQGFFDF-----LESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365
Query: 691 VSL 693
+
Sbjct: 366 EQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 16/159 (10%), Positives = 50/159 (31%), Gaps = 14/159 (8%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D ++S + + N +L +E+ +L + L ++ Y N
Sbjct: 50 DLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFR 109
Query: 628 ALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ + A++ + A L ++ R + A + + + + + ++
Sbjct: 110 GMYELDQREYLSAIKFFKKAESK-----LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164
Query: 686 HFEKAVSLDPNFLD-------AYINLGNVLKEARIFDRA 717
+ +A + + + + ++ A
Sbjct: 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 4e-14
Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 30/240 (12%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-D 125
+ I + + Y V + + + A + R A+ L + L + D
Sbjct: 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDE 185
+ + + ++ P Y V L++ L + + L + +
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA---------DILNQ--D 196
Query: 186 AKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV-- 243
AKN H + V L+ + +K++ ++ V
Sbjct: 197 AKNYHAWQHR--------QWVIQEFKLWDNELQ---YVDQLLKEDVRNNSVWNQRYFVIS 245
Query: 244 ----YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y +R L+ ++ ++L P + N ++ + + L P
Sbjct: 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAW-NYLKGILQDRGLSKYPNLLNQLLDLQP 304
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 10/142 (7%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ I + + Y V + + + A + R A+ L + L +
Sbjct: 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ-- 145
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ + Y IE +P W + + + + ++ D
Sbjct: 146 ----KDLHEEMNY----ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197
Query: 696 NFLDAYINLGNVLKEARIFDRA 717
A+ + V++E +++D
Sbjct: 198 KNYHAWQHRQWVIQEFKLWDNE 219
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 17/168 (10%), Positives = 47/168 (27%), Gaps = 30/168 (17%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
+ L + ++ T I++ P + + + + + + LE + + +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPS-----------------------------CYLK 655
+ + +Q L+ + L+
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265
Query: 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703
I+ P AW+ L + + + + + L P+ Y+
Sbjct: 266 MIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLI 312
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 2e-09
Identities = 27/253 (10%), Positives = 66/253 (26%), Gaps = 55/253 (21%)
Query: 56 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 115
+ L + ++ T I++ P + + + + + + LE + + +
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 116 LAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175
+ + +Q L+ + V + ++ ++
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV---------- 255
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAE 235
L+ E IK P
Sbjct: 256 -------LEREVQYTLE---------------------------------MIKLVPHNES 275
Query: 236 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA----LVAAGDMEQAVQAY 291
A++ L + ++RG L + + L+P Y+ + +
Sbjct: 276 AWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334
Query: 292 VTALQYNPLLKKE 304
AL+ +L KE
Sbjct: 335 NKALELCEILAKE 347
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 24/192 (12%), Positives = 52/192 (27%), Gaps = 45/192 (23%)
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL-----------GNLLKALGR 182
V + Y+ V +L+ R + A L +L LLK+L +
Sbjct: 87 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146
Query: 183 LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242
E ++ T I++ P + + +
Sbjct: 147 DLH--------------------------------EEMNYITAIIEEQPKNYQVWHHRRV 174
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302
+ + + LE + + + + + +Q L+ + +
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--R 232
Query: 303 KEDGWNTEPFVL 314
WN FV+
Sbjct: 233 NNSVWNQRYFVI 244
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-14
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
A++ + I+ P F ++ A + A+ ++KA+ LD +
Sbjct: 68 LALK-----------DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
Query: 697 FLDAYINLGNVLK 709
+A +
Sbjct: 117 CKEAADGYQRCMM 129
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-13
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156
+A+ Y AL + + A
Sbjct: 100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 6e-13
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 635 MEQAVQAYVTALQYNPSC 652
+A+ Y AL + SC
Sbjct: 100 YTKAMDVYQKALDLDSSC 117
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T AIK+NP A+ YSN Y + + Q AL++ ++L+P FI GY AAAL A D
Sbjct: 40 TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD 99
Query: 284 MEQAVQAYVTALQYNP 299
+A+ Y AL +
Sbjct: 100 YTKAMDVYQKALDLDS 115
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-09
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 128 QAVQAYVTALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLY 167
A++ +Q P R L+A+ +A D+Y
Sbjct: 68 LALKDCEECIQLEPTFIKGYTR--KAAALEAMKDYTKAMDVY 107
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665
++ H + PD N GD QA++ Y +AI+ P A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMK-----------HYTEAIKRNPKDAK 51
Query: 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+SN + E LA+ E+ + L+P F+ Y L+ + + +A
Sbjct: 52 LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 103
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
NP LA N GN ++G +A+++Y A++ P Y N AA + +
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
A++ +Q P F+ K R+ AL MK
Sbjct: 68 LALKDCEECIQLEP-----------TFI------KGYTRKAAALEAMKD 99
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 8e-14
Identities = 104/645 (16%), Positives = 187/645 (28%), Gaps = 206/645 (31%)
Query: 250 LQEAL--ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYV-TALQ--YNPL---L 301
+ L E H + D + G + L L++ E+ VQ +V L+ Y L +
Sbjct: 42 PKSILSKEEIDHIIMS-KDAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPI 98
Query: 302 KKED---GWNTEPFVLDFERRKALWRRGAL-----VMMKRPVLGLASAIESISANQEKCA 353
K E T ++ E+R L+ + V +P L L A+ + +
Sbjct: 99 KTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK---- 151
Query: 354 VNIKIECASKDLHSGLFG-G------------SVHEAMTDLIY-I-MGQLVEPNGKILIP 398
N+ + G+ G G V M I+ + + P +L
Sbjct: 152 -NVL-------ID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEM 201
Query: 399 --HIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYP-SL--- 452
+ ++P + I + + L+ Y L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----------LLKSKPYENCLLVL 250
Query: 453 ----SLHGIEGAFSGPGGKTVI-----------PGKVVGKFSI-RIVPNQTPQCVEKYVL 496
+ AF+ K ++ S+ TP V+ +L
Sbjct: 251 LNVQNAKAWN-AFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 497 DYLNELWKARNSPNK-----------FKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNV 545
YL+ + ++ P + + D +W N +H N + NV
Sbjct: 309 KYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNV 365
Query: 546 -EPDLTR----------EGGSIPITL---------TFECRKLDKSAHFSTLAIKQNPLLA 585
EP R IP L + + H +L KQ
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--- 422
Query: 586 EAYSNLGNVY-------KERGQL-QEALENYRHAVR-----LKPDFIDGYINLAAALVAA 632
E+ ++ ++Y + L + +++Y L P ++D Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--------- 473
Query: 633 GDMEQAVQAYVTALQYNPSCY-LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
Y+ + LK IE E F V
Sbjct: 474 ---------------YSHIGHHLKNIE------------------HPERMTL---FRM-V 496
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTL----FYVSSYFMITDEDIDVILERCEAKTEE 747
LD FL+ I + A NTL FY Y I D D + E
Sbjct: 497 FLDFRFLEQKIRHDSTAWNAS-GSILNTLQQLKFY-KPY--ICDND-----PKYERLVNA 547
Query: 748 LNKKFEQLGESSLRD-------FTLDAPTQSVYKFEGEDYREKQK 785
+ ++ E+ + L A +++++ E +++ Q+
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE---EAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 2e-10
Identities = 72/507 (14%), Positives = 146/507 (28%), Gaps = 185/507 (36%)
Query: 399 HIYKDVEPLGDTEEQFYEKIDF-DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGI 457
+ YKD+ L E+ F + D D +D +I L+K + ++MS+ +
Sbjct: 16 YQYKDI--LSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSK--------DAV 61
Query: 458 EGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517
G + ++ + V+K+V + L +K +L+
Sbjct: 62 SGTL----------------RLFWTLLSKQEEMVQKFVEEVLRINYK----------FLM 95
Query: 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577
+T P + Y+ + L +
Sbjct: 96 SP---IKTEQRQP----SMMTRMYIEQRDR-LYND------------------------- 122
Query: 578 IKQNPLLAEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYINLAAA----LVA 631
N + A+ NV + + +L++AL R A + IDG + + +
Sbjct: 123 ---NQVFAK-----YNVSRLQPYLKLRQALLELRPAKNV---LIDG---VLGSGKTWVAL 168
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG--EIWLAIHHFEK 689
+Y ++ + DF + W NL + + E+ + +
Sbjct: 169 -----DVCLSY-------------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY--- 207
Query: 690 AVSLDPNF---LDAYINLGNVLKEARIFDRANTLFYVSSY---FMITDEDIDV----ILE 739
+DPN+ D N+ + + L Y ++ +V
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLL---NVQNAKAWN 260
Query: 740 ----RCEAKTEEL----NKK-FEQLGESSLRDFTLDAPTQSVYKFEGEDY---------- 780
C K L K+ + L ++ +LD + ++ E +
Sbjct: 261 AFNLSC--KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 781 ---REKQKIVP-----IGHWI-EPPKR-ERKANYAVDAYFKEALRTS----EPKAPKAPR 826
RE P I I + + + D + +S EP
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP------- 368
Query: 827 PPKQPIVQDFQFF------PPRLFEIL 847
+ + F P L ++
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 5e-09
Identities = 96/652 (14%), Positives = 190/652 (29%), Gaps = 198/652 (30%)
Query: 19 YQAGDYESAERHCMQLWRQETNNT------GVL-----LLLSSIHFQCRKLDKSAHFSTL 67
+ D S + VL L+S I + R S
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMY 112
Query: 68 AIKQNPLL--AEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYIN-----LAA 118
+++ L + ++ NV + + +L++AL R A + IDG + +A
Sbjct: 113 IEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVAL 168
Query: 119 ALVAAGDMEQAVQ---AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175
+ + ++ + ++ N + L L K L ++D + RSD +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPN---WTSRSDHSS 221
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAI-----VCNYGGRKPTTLESAHFS--TLAIK 228
+K R+ + +K + +N + V N + + S L
Sbjct: 222 NIKL--RIHSIQAELRRLLK--SKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTT 272
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-VAAGDM-EQ 286
+ + + S + L L L L D+ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL----------LLKYLDCRPQDLPRE 321
Query: 287 AVQAYVTALQYNPLL------KKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340
+ NP DG T ++ W+ V + L +
Sbjct: 322 VLTT-------NPRRLSIIAESIRDGLAT------WDN----WKH---VNCDK----LTT 357
Query: 341 AIESISANQE---------KCAV---NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQL 388
IES E + +V + I + L S ++ + D++ ++ +L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--TILL-SLIWFDVIKS---DVMVVVNKL 411
Query: 389 VE--------PNGKILIPHIYKDVEPLGDTEEQFYEKI--------DFDTEDF-RTAID- 430
+ I IP IY +++ + E + I FD++D +D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 431 --------HPKLTKADKTQ--VLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSI 480
H L + + L + L +E
Sbjct: 472 YFYSHIGHH--LKNIEHPERMTLFRMV-F--LDFRFLEQ--------------------- 505
Query: 481 RIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARA-T 539
+I + T +L+ L +L +K Y+ D+ P Y A
Sbjct: 506 KIRHDSTAWNASGSILNTLQQL-------KFYKPYICDN---------DPKYERLVNAIL 549
Query: 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNL 591
++ +E +L + L + A L + + EA+ +
Sbjct: 550 DFLPKIEENLICS----------KYTDLLRIA----LMAEDEAIFEEAHKQV 587
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-13
Identities = 19/91 (20%), Positives = 34/91 (37%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
++ K+ T A+ P SN Y GQ ++A E+ A + P +
Sbjct: 21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L A D + A +AY ++ +
Sbjct: 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE---- 66
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A P ++ AWS LG + A +EK + + N +
Sbjct: 67 -------DAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119
Query: 705 G 705
G
Sbjct: 120 G 120
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 19/90 (21%), Positives = 34/90 (37%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ K+ T A+ P SN Y GQ ++A E+ A + P +
Sbjct: 22 MARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA 81
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS 651
+ L A D + A +AY ++ +
Sbjct: 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 6e-13
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T A+ P SN Y GQ ++A E+ A + P + + L A D
Sbjct: 35 TQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMAD 94
Query: 284 MEQAVQAYVTALQYNP 299
+ A +AY ++
Sbjct: 95 YKGAKEAYEKGIEAEG 110
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 23/92 (25%), Positives = 38/92 (41%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A +P S LG + AK+ Y
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAY 102
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
A +A + +A+ Y +A+ P + SN ++A G+ A
Sbjct: 20 AAMARKEYSKAID-----------LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDA 68
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
E A +DP + A+ LG + + A
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGA 98
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
++ + GN R + +A++ Y A+ + P N AAA A+G E+A +
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
A +P + KA R G A M
Sbjct: 71 ATVVDP-----------KYS------KAWSRLGLARFDMADY 95
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 66 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 123
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 124 GDMEQAVQA 132
+ + +
Sbjct: 129 EEANRGAEP 137
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 281
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 282 GDMEQAVQA 290
+ + +
Sbjct: 129 EEANRGAEP 137
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAA 632
LA +P ++A+S LG + + A E Y + + + + L
Sbjct: 69 ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128
Query: 633 GDMEQAVQA 641
+ + +
Sbjct: 129 EEANRGAEP 137
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 2e-13
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 11/164 (6%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNL--GNVYKERG---QLQEALENYRHAVRLKPDFID 620
K P +N + Y G L A E V+ P+F
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR--PDFAVAWSNLGCVFNAQG 678
A + + + AL + + + ++ + +G
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALN---TEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
+ + + L+ ++L Y+ LG V + + A +
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYL 334
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 36/244 (14%), Positives = 58/244 (23%), Gaps = 54/244 (22%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNL--GNVYKERG---QLQEALENYRHAVRLKPDFID 111
K P +N + Y G L A E V+ P+F
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171
A + + + AL + + L E +L +
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALN-------------TEIDNIVTLPELNNLSIIYQ 281
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231
G+ DE+ +T I
Sbjct: 282 IKAVSALVKGKTDESY--------------------------------QAINT-GIDLEM 308
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
Y LG VY+ +G +EA + Y A L+P + + + V
Sbjct: 309 SWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLYWIENGIFQTSVPYVVPYL 365
Query: 292 VTAL 295
L
Sbjct: 366 DKFL 369
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 8e-13
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 16/189 (8%)
Query: 115 NLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLG 174
+L +L A + + T + P + L +A D + D
Sbjct: 165 DLLESLSKALNQPWPQRMQETLQKILP----------HRGALLTNFYQAHDYL-LHGDDK 213
Query: 175 NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY----GGRKPTTLESAHFSTLAIKQN 230
+L +A L E E K IV + ++ L + + + + +
Sbjct: 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290
L+ Y +G+ E+ + + L+ ++ Y+ L G +A A
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332
Query: 291 YVTALQYNP 299
Y+TA P
Sbjct: 333 YLTAFNLRP 341
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 22/141 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYK--------ERGQLQEALENYRHAVRLKPDFIDG--YINLA 626
++ +P A + V + QL + V L Y A
Sbjct: 225 IVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKA 284
Query: 627 AALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
+ + G +++ QA T + S + + LG V+ +G A
Sbjct: 285 VSALVKGKTDESYQAINTGIDLEMS------------WLNYVLLGKVYEMKGMNREAADA 332
Query: 687 FEKAVSLDPNFLDAYINLGNV 707
+ A +L P Y +
Sbjct: 333 YLTAFNLRPGANTLYWIENGI 353
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
+ + + L+ Y +G+ E+ + + L+ ++ Y+ L G
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMN 326
Query: 636 EQAVQAYVTALQYNPS 651
+A AY+TA P
Sbjct: 327 REAADAYLTAFNLRPG 342
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 7e-08
Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 8/141 (5%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWR-----QETNNTGVLLLLSSIHFQCR 56
A+ L+++ D + ++ + N + + + +
Sbjct: 232 FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116
K D+S I Y LG VY+ +G +EA + Y A L+P +
Sbjct: 292 KTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLYW 348
Query: 117 AAALVAAGDMEQAVQAYVTAL 137
+ + V L
Sbjct: 349 IENGIFQTSVPYVVPYLDKFL 369
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 3e-07
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 565 RKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624
K D+S I Y LG VY+ +G +EA + Y A L+P +
Sbjct: 291 GKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPG--ANTLY 347
Query: 625 LAAALVAAGDMEQAVQAYVTAL 646
+ + V L
Sbjct: 348 WIENGIFQTSVPYVVPYLDKFL 369
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 2e-12
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+
Sbjct: 14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
GY AAAL E+A + Y L++ +
Sbjct: 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-12
Identities = 28/91 (30%), Positives = 42/91 (46%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+D + + AIK +P YSN Y ++G Q+A E+ V LKPD+ G
Sbjct: 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 74
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSC 652
Y AAAL E+A + Y L++ +
Sbjct: 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-11
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ AIK +P YSN Y ++G Q+A E+ V LKPD+ GY AAAL
Sbjct: 28 SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 87
Query: 284 MEQAVQAYVTALQYNP 299
E+A + Y L++
Sbjct: 88 FEEAKRTYEEGLKHEA 103
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE---- 59
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
K ++ +PD+ +S A +E+ + + N L
Sbjct: 60 -------DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
Query: 705 GNV 707
N+
Sbjct: 113 QNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-06
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
++ G+++ A+Q CY +AI+ P V +SN + +G+ A
Sbjct: 13 KALSVGNIDDALQ-----------CYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI-----TDEDIDVILERCE 742
K V L P++ Y L+ F+ A +Y + + L+ E
Sbjct: 62 CKTVDLKPDWGKGYSRKAAALEFLNRFEEA-----KRTYEEGLKHEANNPQLKEGLQNME 116
Query: 743 AK 744
A+
Sbjct: 117 AR 118
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 6e-06
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 136 ALQYNPDLY--CVRSDLGNLLKALGRLDEAKDLY 167
+ PD R L+ L R +EAK Y
Sbjct: 64 TVDLKPDWGKGYSR--KAAALEFLNRFEEAKRTY 95
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 26/113 (23%), Positives = 46/113 (40%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 82
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164
GY AA+ +A G A++ Y T ++ P + K + + +
Sbjct: 83 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
+ AI+ NP A Y N Y AL + A+ L +I GY AA+ +A G
Sbjct: 37 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96
Query: 635 MEQAVQAYVTALQYNPS 651
A++ Y T ++ P
Sbjct: 97 FRAALRDYETVVKVKPH 113
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ AI+ NP A Y N Y AL + A+ L +I GY AA+ +A G
Sbjct: 37 SQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96
Query: 284 MEQAVQAYVTALQYNP 299
A++ Y T ++ P
Sbjct: 97 FRAALRDYETVVKVKP 112
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 11/128 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG---- 68
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
+AIE + + A G+ A+ +E V + P+ DA +
Sbjct: 69 -------DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121
Query: 705 GNVLKEAR 712
K +
Sbjct: 122 QECNKIVK 129
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
A D E A++ Y +AIE P A+ + N + A+
Sbjct: 22 DYFKAKDYENAIK-----------FYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747
+A+ LD ++ Y F A + D+D + + C ++
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130
Query: 748 LNKK 751
+
Sbjct: 131 KAFE 134
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 19/92 (20%), Positives = 31/92 (33%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
A++ + ALG+ A Y
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDY 104
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 18/102 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
A++ + ++ K +RR + + + +
Sbjct: 73 AIELDK-----------KYI------KGYYRRAASNMALGKF 97
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-11
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + A+K++P A YSN + + Q AL++ +RL FI
Sbjct: 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155
GYI AA LVA + +A +AY ALQ +P R + N L+
Sbjct: 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 5e-11
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
I F + A E A +E A+ +DP+ +A
Sbjct: 69 -----------DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Query: 701 YINLGNVLK 709
+ N L+
Sbjct: 118 REGVRNCLR 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-11
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 37 NEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96
Query: 635 MEQAVQAYVTALQYNPS 651
+A +AY ALQ +PS
Sbjct: 97 WSKAQRAYEDALQVDPS 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
A+K++P A YSN + + Q AL++ +RL FI GYI AA LVA +
Sbjct: 37 NEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE 96
Query: 284 MEQAVQAYVTALQYNP 299
+A +AY ALQ +P
Sbjct: 97 WSKAQRAYEDALQVDP 112
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 132 AYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLY 167
T ++ + + +R L A+ +A+ Y
Sbjct: 69 DCDTCIRLDSK-FIKGYIR--KAACLVAMREWSKAQRAY 104
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
GD A++ Y +A++ P+ A+ +SN E A+
Sbjct: 22 EYFKKGDYPTAMR-----------HYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+ + LD F+ YI L R + +A
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKA 100
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
NP LA+ N GN Y ++G A+ +Y AV+ P+ Y N AA L + ++A+
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 290 AYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
T ++ + F+ K R+ LV M+
Sbjct: 69 DCDTCIRLDS-----------KFI------KGYIRKAACLVAMRE 96
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-11
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 81 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 139
+G ++ AL+ ++ +P D Y + A GD ++A+ Y +A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 140 NPDLYCVRSDLGNLLKALGRLDEAKDLY 167
NPD ++ L + KD+Y
Sbjct: 65 NPD-SPALQARKMVMDILNFYN--KDMY 89
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ L+ GD+E A+QA LQ P A+ +G + G+
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPV----------GKDEAYYLMGNAYRKLGDWQ 52
Query: 682 LAIHHFEKAVSLDPNF--LDAYINLGNVLK 709
A+++++ A+ L+P+ L A + ++L
Sbjct: 53 KALNNYQSAIELNPDSPALQARKMVMDILN 82
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 68 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 127 EQAVQAYVTALQYNPDLY 144
+ YN D+Y
Sbjct: 78 MDILNF------YNKDMY 89
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-10
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 226 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 284
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 285 EQAVQAYVTALQYNPL 300
+ Y + YN L
Sbjct: 78 MDILNFYNKDM-YNQL 92
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 648
+G ++ AL+ ++ +P D Y + A GD ++A+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-------- 56
Query: 649 NPSCYLKAIETRPDFAVAWSN 669
Y AIE PD +
Sbjct: 57 ---NYQSAIELNPDSPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 577 AIKQNPL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
++ P+ EAY +GN Y++ G Q+AL NY+ A+ L PD AL A +
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMV 77
Query: 636 EQAVQAY 642
+ Y
Sbjct: 78 MDILNFY 84
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQY 297
+G ++ AL+ ++ +P D Y + A GD ++A+ Y +A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 298 NP 299
NP
Sbjct: 65 NP 66
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR-SDLGNLLKALGRLDEAKDLY 167
+ L+ GD+E A+QA LQ P +GN + LG +A + Y
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNY 58
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
A++ +P+ +++ A+ A E A+ + A + D +
Sbjct: 64 AIEKDPN-FVR----------AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
Query: 705 G 705
Sbjct: 113 E 113
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F + T IK+ P A YSN + EA+ + A+ P+F+
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
YI A A +A + A++ A + +
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTKDAE 104
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 9e-11
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87
Query: 635 MEQAVQAYVTALQYNPS 651
A++ A +
Sbjct: 88 YASALETLDAARTKDAE 104
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 1e-10
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
T IK+ P A YSN + EA+ + A+ P+F+ YI A A +A +
Sbjct: 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87
Query: 284 MEQAVQAYVTALQYNP 299
A++ A +
Sbjct: 88 YASALETLDAARTKDA 103
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 136 ALQYNPDLYCVR--SDLGNLLKALGRLDEAKDLY 167
A++ +P+ VR A+ A +
Sbjct: 64 AIEKDPN--FVRAYIRKATAQIAVKEYASALETL 95
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 16/127 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
D AV+ Y + I+ P+ A +SN AI
Sbjct: 13 EYFTKSDWPNAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEE 747
KA+ DPNF+ AYI + + A + + +D +V + ++
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASA-----LETLDAARTKDAEVNNGSSAREIDQ 116
Query: 748 LNKKFEQ 754
L K Q
Sbjct: 117 LYYKASQ 123
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
AE G Y + A++ Y ++ P+ GY N AAAL +A+
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKR 333
A++ +P FV +A R+ A + +K
Sbjct: 64 AIEKDP-----------NFV------RAYIRKATAQIAVKE 87
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L + ++A+ A +
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 33 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92
Query: 635 MEQAVQAYVTALQYNPS 651
++A+ A
Sbjct: 93 YDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 33 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 92
Query: 284 MEQAVQAYVTALQYNP 299
++A+ A
Sbjct: 93 YDEAIANLQRAYSLAK 108
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 25/120 (20%), Positives = 36/120 (30%), Gaps = 11/120 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA+ AL+ + +K A LG AI + ++A SL
Sbjct: 61 QALADCRRALELDGQ-SVK----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 21/100 (21%), Positives = 29/100 (29%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
QA+ AL+ + LG + DEA
Sbjct: 61 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 9e-05
Identities = 21/110 (19%), Positives = 31/110 (28%), Gaps = 18/110 (16%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
A+ GN + EA Y A+ P Y N A + E
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVMMKRP 334
QA+ AL+ + V KA + G + M+
Sbjct: 61 QALADCRRALELDG-----------QSV------KAHFFLGQCQLEMESY 93
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
L +A CY +AI P AV ++N + + A+
Sbjct: 18 RLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 66
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+A+ LD + A+ LG E +D A
Sbjct: 67 RRALELDGQSVKAHFFLGQCQLEMESYDEA 96
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-10
Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 56/237 (23%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
V + A+Q N LG + E +DL + KA+ + A
Sbjct: 97 VDSLENAIQIFTHRGQ-FRRGANFKFELGEILE--------NDLHDYAKAIDCYELAGEW 147
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
+ + + L + + ++ GQ
Sbjct: 148 YAQ----------------------------------DQSVALSNKCFIKCADLKALDGQ 173
Query: 250 LQEALENYRHAVR-------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
EA + Y ++ + D ++ +AA D A + +P
Sbjct: 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 18/150 (12%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NAQGEIWLAIHHFEKAVSL---- 693
V + A+Q A LG + N + AI +E A
Sbjct: 97 VDSLENAIQ-----IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 694 --DPNFLDAYINLGNVLKEARIFDRANTLF 721
+I ++ + A+ ++
Sbjct: 152 QSVALSNKCFIKCADLKALDGQYIEASDIY 181
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 585 AEAYSNLGNVY-KERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQ 637
A LG + + +A++ Y A +I A G +
Sbjct: 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A Y ++ + L ++ + G A + A ++ S DPNF
Sbjct: 177 ASDIYSKLIKSSMGNRL----SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232
Query: 698 LDA 700
D+
Sbjct: 233 ADS 235
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 12/134 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVA-AGDMEQ 637
Y +K G A+++ +A+++ + L L D +
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A+ Y A ++ ++ + + G+ A + K +
Sbjct: 137 AIDCYELAGEW-----YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191
Query: 698 LDAYINLGNVLKEA 711
+ +L + +
Sbjct: 192 RLSQWSLKDYFLKK 205
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 5e-10
Identities = 27/153 (17%), Positives = 47/153 (30%), Gaps = 22/153 (14%)
Query: 577 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 622
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWS----NLGCVFNAQG 678
LA AL ++A+ + AL Y + + E D W + + G
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHY----FNRRGELNQDEGKLWISAVYSRALALDGLG 116
Query: 679 EIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA 711
A+ F+K V + +++ A
Sbjct: 117 RGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-07
Identities = 29/133 (21%), Positives = 40/133 (30%), Gaps = 26/133 (19%)
Query: 68 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 113
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
LA AL ++A+ + AL Y R +L DE K
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNR----RGELNQ--------DEGKLWISAVYSR 108
Query: 174 GNLLKALGRLDEA 186
L LGR EA
Sbjct: 109 ALALDGLGRGAEA 121
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 2e-04
Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 226 AIKQNPLLAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------Y 271
+K + AY L G+ EA N R A+ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 272 INLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-ALVM 330
LA AL ++A+ + AL Y + + + ++ A++ R AL
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI------SAVYSRALALDG 114
Query: 331 MKRPVLGLASAIESISANQEK 351
+ R + + + +E+
Sbjct: 115 LGRGAEAMPEFKKVVEMIEER 135
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 7e-10
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPD 142
+ L + ++A+ A +
Sbjct: 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 19/86 (22%), Positives = 34/86 (39%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 28 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETR 660
++A+ A L +
Sbjct: 88 YDEAIANLQRAYSLAKEQRLNFGDDI 113
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L +
Sbjct: 28 GRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87
Query: 284 MEQAVQAYVTALQYNP 299
++A+ A
Sbjct: 88 YDEAIANLQRAYSLAK 103
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 25/216 (11%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYI-- 702
AL+ + +K A LG AI + ++A SL +
Sbjct: 64 ALELDGQ-SVK----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112
Query: 703 ----------NLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752
N ++E RI + Y++ E + E +
Sbjct: 113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIA--AERERELEECQRNHEGHEDDGH 170
Query: 753 EQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVP 788
+ ++ + F D + K++ +P
Sbjct: 171 IRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIP 206
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 36/205 (17%), Positives = 58/205 (28%), Gaps = 16/205 (7%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
L +A CY +AI P AV ++N + + A+
Sbjct: 13 RLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRA-----NTLFYVSSYFMITDEDIDVILERCE 742
+A+ LD + A+ LG E +D A + +DI L +
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121
Query: 743 AKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIGHWIEPPKRERKA 802
K ++ ES L + + E R + GH
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181
Query: 803 NYAVDAYFKEALRTSEPKAPKAPRP 827
+ A E + K K P
Sbjct: 182 HDKYMADMDELFSQVDEKRKKRDIP 206
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 21/92 (22%), Positives = 29/92 (31%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
AL+ + LG + DEA
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ---- 59
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701
+ + + A+ + V + Y
Sbjct: 60 -------MCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 5e-09
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193
L+Y R L + +G++ + +DE + +
Sbjct: 64 GLRYTS----------TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
E GN ++G +EA+ Y + +P GY N A AL+ G+ QA+Q
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
Query: 294 ALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350
L+Y + R ++ + S + E
Sbjct: 64 GLRYTSTAE-----------------HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
F+ ++ H I P YSN + G+ +A++ + +R
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQ 138
I + AV + +
Sbjct: 74 VAIRSKLQY-RLELAQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-07
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
I P YSN + G+ +A++ + +R I
Sbjct: 28 DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLEL 86
Query: 284 MEQAVQAYVTALQ-YNPLLKK 303
+ AV + + + L +
Sbjct: 87 AQGAVGSVQIPVVEVDELPEG 107
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 5e-07
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
Query: 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
I P YSN + G+ +A++ + +R I
Sbjct: 28 DQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLEL 86
Query: 635 MEQAVQAYVTALQ 647
+ AV + +
Sbjct: 87 AQGAVGSVQIPVV 99
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
+L G +AV CY + I +P V +SN GE AI
Sbjct: 13 SLFKQGLYREAVH-----------CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61
Query: 688 EKAVSLDPNFLDAYINLGNVLKEAR 712
++ + I +
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYRLEL 86
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 5e-09
Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 24/184 (13%)
Query: 110 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCV 169
+ + + L+ G+ QA+ T V+ + L + + A++L
Sbjct: 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL--- 62
Query: 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ 229
L + + K + K++ ++ +
Sbjct: 63 ----------LATIPLE--YQDNSYKSLIAKLELH-------QQAAESPELKRLEQELAA 103
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI--NLAAALVAAGDMEQA 287
NP E L Y + G+ +EALE + +++ DG + L A G
Sbjct: 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163
Query: 288 VQAY 291
Y
Sbjct: 164 ASKY 167
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 4e-07
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 4/169 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LL+ Q G++ A L + + V L + + ++ + +
Sbjct: 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ + ++ L+ + PD + LA G E+A+
Sbjct: 69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128
Query: 131 QAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177
+ L+ N V+ ++L ALG+ + Y R L ++L
Sbjct: 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY--RRQLYSIL 175
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 11/141 (7%)
Query: 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
T K++ + + Q + E+ ++ +P+ +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELH-----------QQAAESPELKRLEQELAANPDNFEL 110
Query: 701 YINLGNVLKEARIFDRANTLF 721
L + + A L
Sbjct: 111 ACELAVQYNQVGRDEEALELL 131
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 132 AY-----------VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180
+L +L+ ++ L + L D + + +L +
Sbjct: 62 LLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV 121
Query: 181 GRLDEAKNLHTENIK 195
GR +EA L +K
Sbjct: 122 GRDEEALELLWNILK 136
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 10/62 (16%), Positives = 19/62 (30%)
Query: 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
N E + ++G+ +AL + D + A L+ E A +
Sbjct: 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQE 61
Query: 290 AY 291
Sbjct: 62 LL 63
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 3e-08
Identities = 15/121 (12%), Positives = 36/121 (29%), Gaps = 12/121 (9%)
Query: 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
+ + ++ ++ + + P D L+ A +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM-I 62
Query: 647 QYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW-----------LAIHHFEKAVSLDP 695
Q + + +A+ P A +G + + + LA F++AV P
Sbjct: 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
Query: 696 N 696
+
Sbjct: 123 D 123
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 2e-06
Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 626
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 627 AALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA 676
A + D +A + A Q + +A++ +PD +L A
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQ----FFQQAVDEQPDNTHYLKSLEMTAKA 137
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 1e-05
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 25/140 (17%)
Query: 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM----------E 127
+ + ++ ++ + + P D L+ +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQ 63
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL-----------DEAKDLY--CVRSDLG 174
+A+ + AL +P +GN + L D A + V
Sbjct: 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123
Query: 175 NLL--KALGRLDEAKNLHTE 192
N K+L +A LH E
Sbjct: 124 NTHYLKSLEMTAKAPQLHAE 143
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 3e-05
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 32/123 (26%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 117
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 118 AAL-----------VAAGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKALGRLDEAK 164
A A + + A Q + A+ P Y LK+L +A
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY---------LKSLEMTAKAP 138
Query: 165 DLY 167
L+
Sbjct: 139 QLH 141
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLA 275
K NPL A+ + G V E Q +QEA+ + A+ + P + +
Sbjct: 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG 87
Query: 276 AAL-----------VAAGDMEQAVQAYVTALQYNP 299
A A + + A Q + A+ P
Sbjct: 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 8e-04
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 653 YLKAIETRPDFAVAWSNLGCVF----------NAQGEIWLAIHHFEKAVSLDPNFLDAYI 702
++ P A + G V +A+ I AI FE+A+ +DP +A
Sbjct: 25 AENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84
Query: 703 NLGNVL 708
+GN
Sbjct: 85 CIGNAY 90
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 35/335 (10%), Positives = 75/335 (22%), Gaps = 94/335 (28%)
Query: 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI------ 358
DGW++ PF A+ RG L K P + AI+ + I +
Sbjct: 115 DGWDSNPFEP-VVTEDAIIARGTLD-DKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDE 172
Query: 359 ECASKDL-------------------------HSGLFGGSV--HEAMTDLIYIMGQLVEP 391
E K G+ + ++ D +L+
Sbjct: 173 ESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITF 232
Query: 392 NGKI---LIPHIYKDVEPLGDTEEQFYEKIDFDTE------------------------- 423
++P + + + + ++ E
Sbjct: 233 KSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVH 292
Query: 424 ---------------DFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468
F +++ +A + G++ G T
Sbjct: 293 GMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVT 352
Query: 469 VIPGKV--------VGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSG 520
G + + ++R + + + + F+ L
Sbjct: 353 TNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQ--------YGFEVKLGKVQ 404
Query: 521 KSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS 555
+ P A + N + GG
Sbjct: 405 PPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGG 439
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-07
Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 14/159 (8%)
Query: 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 601
V+NV+ + + I + S+ + +LG++ + R Q
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---ICQHCLVHLGDIARYRNQT 168
Query: 602 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661
+A YRHA +L P Y LA + GD + Y ++I +
Sbjct: 169 SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF-----------YYCRSIAVKF 217
Query: 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
F A +NL + E + F+
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKF 256
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 1e-04
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 19/184 (10%)
Query: 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQ 600
VE DL IT K + + S + + L A Y+ L
Sbjct: 55 KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN 114
Query: 601 LQEALENYRHAVRLKPDFIDG------------YINLAAALVAAGDMEQAVQAYVTALQY 648
+ + + + LV GD+ + A
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES- 173
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
Y A + P ++ L + +++G+ I ++ +++++ F A NL L
Sbjct: 174 ---YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230
Query: 709 KEAR 712
+A
Sbjct: 231 SKAL 234
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Length = 497 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 4e-04
Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 8/182 (4%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LE A Y E + L + ++ ++ H +S+ S +
Sbjct: 94 FLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-- 151
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+LG++ + R Q +A YRHA +L P Y LA + GD +
Sbjct: 152 -----QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206
Query: 131 QAYVTALQYNPDLYCVRSDLGNLL-KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
Y ++ ++L L KAL DE K + V + +K G + +K+L
Sbjct: 207 FYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSL 266
Query: 190 HT 191
Sbjct: 267 EK 268
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 3/109 (2%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
F+C + T A+ + A + N + + +A A+
Sbjct: 38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97
Query: 109 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157
+ + AL G ++QAV + P + L N+
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 14/135 (10%)
Query: 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDME 636
E GN + G AL Y A+ L D + N AA + D +
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+A A++ + +KA G + A+ ++ VSL+P
Sbjct: 83 KAETEASKAIEKDGG-DVKA----------LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Query: 697 FLDAYINLGNVLKEA 711
L N+ +
Sbjct: 132 NKVFQEALRNISGPS 146
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 575 TLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631
T A+ + A + N + + +A A+ + + AL
Sbjct: 52 TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111
Query: 632 AGDMEQAVQAYVTALQYNPS 651
G ++QAV + P
Sbjct: 112 LGRLDQAVLDLQRCVSLEPK 131
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 224 TLAIKQNP---LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280
T A+ + A + N + + +A A+ + + AL
Sbjct: 52 TQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK 111
Query: 281 AGDMEQAVQAYVTALQYNP 299
G ++QAV + P
Sbjct: 112 LGRLDQAVLDLQRCVSLEP 130
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 26/121 (21%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG---YINLAAALVAAGDME 127
E GN + G AL Y A+ L D + N AA + D +
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYD 82
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187
+A A++ + +KAL R L+ LGRLD+A
Sbjct: 83 KAETEASKAIEKDG----------GDVKALYR-------------RSQALEKLGRLDQAV 119
Query: 188 N 188
Sbjct: 120 L 120
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 31/227 (13%), Positives = 57/227 (25%), Gaps = 22/227 (9%)
Query: 90 GQLQEALENYRHAVRLKPDFIDGYINLAAA-------LVAAGDMEQAVQAYVTALQYNPD 142
+L+ + D +I L A + ++Q +
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS 79
Query: 143 LYCVRSDLGNLLKALG-RLDEAKDLYC----VRSDLGNLLKALGRLDEAKNLHTENIKPV 197
R +G L + + + + GN A+ L+ A +E++
Sbjct: 80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAW 139
Query: 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQLQEALEN 256
A+V R + + + L A G EA
Sbjct: 140 MK----AVVYGAAERWTDVI--DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR 193
Query: 257 YRHAV---RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300
A + LA A + G+ AV +P
Sbjct: 194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 24/215 (11%), Positives = 50/215 (23%), Gaps = 52/215 (24%)
Query: 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI----------DGYINLAAALVAAG 124
L A+ + N + G +Q ++ + + + + AA A G
Sbjct: 57 LFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQG 116
Query: 125 DMEQAVQAYVTALQYNPD---------LYCVRSDLGNLLKALGRLDEAKDLYC---VRSD 172
+ A++A A + +Y +++ + + D +
Sbjct: 117 NYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
G L EA+ TE
Sbjct: 177 HGVAAANLALFTEAERRLTEANDSPAG------------------------------EAC 206
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267
L + +G A+ P+
Sbjct: 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEP 241
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
GQLQ+ALE A++ P + L GD E+A + + +++ P+
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68
Query: 148 SDLGNLLKA 156
S L +L+KA
Sbjct: 69 SQLRHLVKA 77
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
AIK +P A S+ + G + A E +++L P+++ G L + AA +
Sbjct: 23 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82
Query: 128 QAVQAYVTA-LQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
Q TA + + NL ++ +L
Sbjct: 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 123
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 8e-04
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
AIK +P A S+ + G + A E +++L P+++ G L + AA +
Sbjct: 23 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 82
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
Q TA + + + + + L
Sbjct: 83 DFAQGAATA----------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 26/110 (23%), Positives = 45/110 (40%)
Query: 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111
+F+ + + + F + AI+ NP A Y N Y AL + A+ L +I
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
GY AA+ +A G A++ Y T ++ P + K + +
Sbjct: 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F+ + + + F + AI+ NP A Y N Y AL + A+ L +I G
Sbjct: 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 76
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS 651
Y AA+ +A G A++ Y T ++ P
Sbjct: 77 YYRRAASNMALGKFRAALRDYETVVKVKPH 106
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 11/128 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE N Y + + A++ Y A+ L P Y N + A + Y
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLA-------YLRTECYGY 58
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
AL +AIE + + A G+ A+ +E V + P+ DA +
Sbjct: 59 ALGDAT----RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 114
Query: 705 GNVLKEAR 712
K +
Sbjct: 115 QECNKIVK 122
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ F + AI+ NP A Y N Y AL + A+ L +I GY AA+
Sbjct: 24 NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83
Query: 278 LVAAGDMEQAVQAYVTALQYNP 299
+A G A++ Y T ++ P
Sbjct: 84 NMALGKFRAALRDYETVVKVKP 105
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALG-RLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ A NP+ +R+ + L + K + G + +E KN
Sbjct: 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF------GGMFDKGPLYEEKKN 195
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 13/73 (17%), Positives = 30/73 (41%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 639 VQAYVTALQYNPS 651
+ A NP+
Sbjct: 142 KENLYKAASLNPN 154
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 287
K+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Query: 288 VQAYVTALQYNP 299
+ A NP
Sbjct: 142 KENLYKAASLNP 153
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG----------------YINLAAA 628
A GN + ++ ++ EA+ Y+ A+ + +NLA
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 629 LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688
D +A+ L+ + + +KA+ VA G + A +
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKN-NVKALYKL---GVANMYFG-------FLEEAKENLY 146
Query: 689 KAVSLDPN 696
KA SL+PN
Sbjct: 147 KAASLNPN 154
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 26/155 (16%)
Query: 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-- 614
+ + +K+ + ++ + G VY + G+ ++AL Y+ V
Sbjct: 119 ELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLE 178
Query: 615 -KPDFIDG------------YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661
+ F + ++NLA + A+++ AL+ + + K + R
Sbjct: 179 YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRR- 236
Query: 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
G A + LA F+K + L PN
Sbjct: 237 ---------GEAHLAVNDFELARADFQKVLQLYPN 262
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 1/101 (0%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 127
A K L ++ NL + + A+E+ A+ L + G A +A D E
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA-KDLY 167
A + LQ P+ ++ L + + R K LY
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 548 DLTREGGSIP----ITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 603
+ + I + + +K+ + K+ A G VY + G+ +
Sbjct: 227 EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQ 286
Query: 604 ALENYRHAVR---------------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648
A+ Y V + + ++NLA + + +AV+ AL
Sbjct: 287 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346
Query: 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
+ + K + R A + E A FEK + ++P
Sbjct: 347 DSAN-EKGLYRR---GEAQLLMN-------EFESAKGDFEKVLEVNPQ 383
|
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSW---RT 525
+ ++ TPQ + + L + + ++ A L+ SG
Sbjct: 288 STAAWCELDCRLGLLTGDTPQEAMRGIEKCLADAQATDSFLSENPAELVWSGFQADPAVC 347
Query: 526 NPEHPNYVAAARATKYVYNVEPDLTREGG 554
P A K +N D
Sbjct: 348 EPGGVAEDVLTAAHKAAFNAPLDARLSTA 376
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 729 ITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREK---QK 785
+ D ++D +L E + LG + +FE DY+
Sbjct: 747 LEDLNLDDVLNHAEDHVTTPDLGESHLGGEEF-----------LKQFEVTDYKADIDWDD 795
Query: 786 IVP 788
I+P
Sbjct: 796 IIP 798
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 2y9y_A | 374 | Imitation switch protein 1 (DEL_ATPase); transcrip | 99.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 1ofc_X | 304 | ISWI protein; nuclear protein, chromatin remodelin | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.89 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.89 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.87 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.87 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.87 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.85 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.85 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.83 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.83 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.8 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.79 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.78 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.78 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.77 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.76 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.76 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.76 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.75 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.75 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.73 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.72 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.66 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.65 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.62 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.62 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.61 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.59 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.55 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.55 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.51 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.51 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.5 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.49 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.47 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.47 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.47 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.47 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.45 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.44 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.44 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.42 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.42 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.38 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.37 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.37 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.37 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.34 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.31 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.29 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.06 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.02 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.01 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.93 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.83 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.82 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.53 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.48 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.23 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.09 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.04 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.49 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.12 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.11 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.08 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.89 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.2 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.17 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.11 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.07 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.04 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.74 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.56 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.4 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.22 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.87 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.83 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.98 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.83 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.55 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.46 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 93.12 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 92.67 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 92.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.33 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.95 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.92 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.68 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 86.36 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.01 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.15 |
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=381.24 Aligned_cols=386 Identities=60% Similarity=0.912 Sum_probs=367.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
+.+|..++..|++++|+..+.++++.+|+++.++..+|.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~---- 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY---- 158 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHH
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 251 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 251 (904)
.+++..+|+++.++..+|.++...|+++
T Consensus 159 ----------------------------------------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 159 ----------------------------------------------------LKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp ----------------------------------------------------HHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ----------------------------------------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 6888889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcc
Q psy17306 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMM 331 (904)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 331 (904)
+|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------- 237 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----------------------------- 237 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH-----------------------------
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH-----------------------------
Confidence 999999999999999999999999999999999999999999999998771
Q ss_pred cccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccH
Q psy17306 332 KRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTE 411 (904)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T 1w3b_A 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhh
Q psy17306 412 EQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCV 491 (904)
Q Consensus 412 ~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T 1w3b_A 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhh
Q psy17306 492 EKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSA 571 (904)
Q Consensus 492 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~ 571 (904)
.++..+|.++...|++++|+..|++
T Consensus 238 -------------------------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~------ 262 (388)
T 1w3b_A 238 -------------------------------------------------VVHGNLACVYYEQGLIDLAIDTYRR------ 262 (388)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH------
T ss_pred -------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHH------
Confidence 1236678888899999999999999
Q ss_pred hHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 572 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 572 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+.
T Consensus 263 -----al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~----------- 326 (388)
T 1w3b_A 263 -----AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR----------- 326 (388)
T ss_dssp -----HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-----------
T ss_pred -----HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH-----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 652 CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
.+.++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+++++|.++..+|+
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 66777778899999999999999999999999999999999999999999999999988774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=366.15 Aligned_cols=382 Identities=26% Similarity=0.356 Sum_probs=363.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 126 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 126 (904)
.+|..++..|++++|+..+.++++.+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 127 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
++|+..|+++++.+|++..++..+|.++...|++++|+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------------------- 124 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY--------------------------------------- 124 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH---------------------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHH---------------------------------------
Confidence 99999999999999999999999999999999999999988
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (904)
.+++..+|+...++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 125 -----------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 125 -----------------VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp -----------------HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred -----------------HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 688889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhcccccc
Q psy17306 287 AVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLH 366 (904)
Q Consensus 287 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (904)
|+..|+++++.+|++.
T Consensus 188 A~~~~~~al~~~p~~~---------------------------------------------------------------- 203 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFL---------------------------------------------------------------- 203 (388)
T ss_dssp HHHHHHHHHHHCTTCH----------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCcH----------------------------------------------------------------
Confidence 9999999999998771
Q ss_pred ccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhh
Q psy17306 367 SGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSR 446 (904)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~ 446 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T 1w3b_A 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccC
Q psy17306 447 WRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTN 526 (904)
Q Consensus 447 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 526 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T 1w3b_A 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 527 PEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 606 (904)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 606 (904)
.++..+|.++...|++++|+..|++ ++..+|+++.++..+|.++...|++++|+.
T Consensus 204 --------------~~~~~lg~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 204 --------------DAYINLGNVLKEARIFDRAVAAYLR-----------ALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp --------------HHHHHHHHHHHTTTCTTHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 1236677888899999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 686 (904)
.|+++++.+|+++.++.++|.++...|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAED-----------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999 66666677889999999999999999999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
|+++++++|+++.++.++|.++...|++++|+..|++++...|+..++...++.+...
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888888776643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=380.28 Aligned_cols=480 Identities=13% Similarity=0.016 Sum_probs=404.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....+...+..+...|++++|+..|++++...|+ ...++.+|.++...|++++|+..|++++.. |.++.++..+|.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHH
Confidence 3566788999999999999999999999999995 477889999999999999999999998765 66788999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLK----------------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
...|++++|+..|++..... |.+..++..+|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 99999999999998632222 22478999999999999999999999999999999999999988
Q ss_pred HHHHHHcCChHHHHHHH---------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcc
Q psy17306 151 GNLLKALGRLDEAKDLY---------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT 215 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (904)
+.++...+....+.... ..+..++..+...|++++|+..+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~----------------------- 297 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS----------------------- 297 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT-----------------------
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH-----------------------
Confidence 87765443332221110 1233445666677777888877764
Q ss_pred hHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 216 TLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
++.. |.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++
T Consensus 298 ----------~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 298 ----------INGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp ----------STTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------hhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333 67789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh
Q psy17306 296 QYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH 375 (904)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (904)
+..|++. ...
T Consensus 367 ~~~~~~~----------------------------------------------------------------------~~~ 376 (597)
T 2xpi_A 367 DRHPEKA----------------------------------------------------------------------VTW 376 (597)
T ss_dssp HHCTTSH----------------------------------------------------------------------HHH
T ss_pred hhCcccH----------------------------------------------------------------------HHH
Confidence 9888771 122
Q ss_pred hHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccc
Q psy17306 376 EAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLH 455 (904)
Q Consensus 376 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~ 455 (904)
..++.++...|. +++|+..|++++..
T Consensus 377 ~~l~~~~~~~g~------------------------------~~~A~~~~~~~~~~------------------------ 402 (597)
T 2xpi_A 377 LAVGIYYLCVNK------------------------------ISEARRYFSKSSTM------------------------ 402 (597)
T ss_dssp HHHHHHHHHTTC------------------------------HHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhcc------------------------------HHHHHHHHHHHHHh------------------------
Confidence 223333333333 66777777776654
Q ss_pred cccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHH
Q psy17306 456 GIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAA 535 (904)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (904)
.|.++.
T Consensus 403 ----------------------------------------------------------------------~~~~~~---- 408 (597)
T 2xpi_A 403 ----------------------------------------------------------------------DPQFGP---- 408 (597)
T ss_dssp ----------------------------------------------------------------------CTTCHH----
T ss_pred ----------------------------------------------------------------------CCCCHH----
Confidence 233322
Q ss_pred HHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 536 ARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
+|..+|.++...|++++|+..|++ ++...|.+..++..+|.++...|++++|++.|+++++..
T Consensus 409 ------~~~~l~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 409 ------AWIGFAHSFAIEGEHDQAISAYTT-----------AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp ------HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 248889999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
|.++.++..+|.++...|++++|++.|+++++..|+ ...+|+. +.+|..+|.+|...|++++|+..|+++++++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-----TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-----cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988877764322 2346775 8899999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|+++.++..+|.+|...|++++|.++|+++++..|++......++.++
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=354.15 Aligned_cols=417 Identities=14% Similarity=0.107 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC----------------
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN---------------- 72 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 72 (904)
..++.+|..+...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc
Confidence 56788999999999999999999998765 6779999999999999999999999999643333
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------------------------
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-------------------------------- 120 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------------------------------- 120 (904)
|.+..+|..+|.+|...|++++|+..|+++++.+|++..++..++.++
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 335889999999999999999999999999999999999888776543
Q ss_pred ------HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC
Q psy17306 121 ------VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI 194 (904)
Q Consensus 121 ------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 194 (904)
...|++++|+..|+++++. |.+..++..++.++...|++++|+..|
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~--------------------------- 328 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAIT--------------------------- 328 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHH---------------------------
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHH---------------------------
Confidence 3456677777777776666 556667777777777777777666666
Q ss_pred CCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 195 KPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
++++..+|.+..++..++.++...|++++|+..+++++...|+++.++..+
T Consensus 329 -----------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 379 (597)
T 2xpi_A 329 -----------------------------TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV 379 (597)
T ss_dssp -----------------------------HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----------------------------HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 467777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhH
Q psy17306 275 AAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAV 354 (904)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (904)
|.+|...|++++|+..|+++++..|.+.
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------------------------------------------- 407 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFG---------------------------------------------------- 407 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------------------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCH----------------------------------------------------
Confidence 8888888888889888888888888761
Q ss_pred HHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCc
Q psy17306 355 NIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKL 434 (904)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~ 434 (904)
.....++.++...|. +++|+..|++++..
T Consensus 408 ------------------~~~~~l~~~~~~~g~------------------------------~~~A~~~~~~~~~~--- 436 (597)
T 2xpi_A 408 ------------------PAWIGFAHSFAIEGE------------------------------HDQAISAYTTAARL--- 436 (597)
T ss_dssp ------------------HHHHHHHHHHHHHTC------------------------------HHHHHHHHHHHHHT---
T ss_pred ------------------HHHHHHHHHHHHcCC------------------------------HHHHHHHHHHHHHh---
Confidence 012223333333333 66677777666654
Q ss_pred chhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHH
Q psy17306 435 TKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKA 514 (904)
Q Consensus 435 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 514 (904)
T Consensus 437 -------------------------------------------------------------------------------- 436 (597)
T 2xpi_A 437 -------------------------------------------------------------------------------- 436 (597)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHH
Q psy17306 515 YLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 594 (904)
Q Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~ 594 (904)
.|+++. ++..+|.++...|++++|+..|++ ++...|.++.+|..+|.+
T Consensus 437 -----------~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 437 -----------FQGTHL----------PYLFLGMQHMQLGNILLANEYLQS-----------SYALFQYDPLLLNELGVV 484 (597)
T ss_dssp -----------TTTCSH----------HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHH
T ss_pred -----------CccchH----------HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCChHHHHHHHHH
Confidence 222222 237788999999999999999999 999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 595 YKERGQLQEALENYRHAVRL------KPDF-IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~------~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
+...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+. .+.++++.+|+++.+|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID-----------ALNQGLLLSTNDANVH 553 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSSCCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCCChHHH
Confidence 99999999999999999998 6765 7899999999999999999999 6666667789999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
..+|.+|...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=341.25 Aligned_cols=434 Identities=16% Similarity=0.111 Sum_probs=350.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+.+++.+|..++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35678899999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHh------------------c----
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY---VTALQ------------------Y---- 139 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~al~------------------~---- 139 (904)
++..+|++++|+..|++++..+|.+...................+...+ +.+.. .
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999999876544333322222222111111111 11100 0
Q ss_pred --------------------CCChhhHHHHHHHHHHH---cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCC
Q psy17306 140 --------------------NPDLYCVRSDLGNLLKA---LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP 196 (904)
Q Consensus 140 --------------------~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 196 (904)
.|++..++..+|.++.. .|++++|+..+ ++++..++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF----------------TKAARLFEEQLDK 225 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH----------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH----------------HHHHHHhhhhhcc
Confidence 12334444444444443 44555554444 2222211100000
Q ss_pred cchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy17306 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276 (904)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (904)
.+ ......|..+.++..+|.++...|++++|+..|++++..+|. +.++..+|.
T Consensus 226 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~ 278 (514)
T 2gw1_A 226 NN--------------------------EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL 278 (514)
T ss_dssp ST--------------------------TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred Cc--------------------------cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH
Confidence 00 000113677899999999999999999999999999999999 999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHH
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNI 356 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (904)
++...|++++|+..+++++...|.++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------------------------------ 304 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDSNNS------------------------------------------------------ 304 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCTTCT------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHhhcCcCCH------------------------------------------------------
Confidence 99999999999999999998888661
Q ss_pred HhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcch
Q psy17306 357 KIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTK 436 (904)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~ 436 (904)
T Consensus 305 -------------------------------------------------------------------------------- 304 (514)
T 2gw1_A 305 -------------------------------------------------------------------------------- 304 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHH
Q psy17306 437 ADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYL 516 (904)
Q Consensus 437 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 516 (904)
T Consensus 305 -------------------------------------------------------------------------------- 304 (514)
T 2gw1_A 305 -------------------------------------------------------------------------------- 304 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHH
Q psy17306 517 LDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 596 (904)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~ 596 (904)
.++..+|.++...|++++|+..+++ ++..+|.++.++..+|.++.
T Consensus 305 ------------------------~~~~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 305 ------------------------SVYYHRGQMNFILQNYDQAGKDFDK-----------AKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp ------------------------HHHHHHHHHHHHTTCTTHHHHHHHH-----------HHHTCSSCSHHHHHHHHHTT
T ss_pred ------------------------HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhChhhHHHHHHHHHHHH
Confidence 1236677788889999999999999 99999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch------HHHHHHH
Q psy17306 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF------AVAWSNL 670 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~------~~a~~~l 670 (904)
..|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++ ..|++ ..++..+
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-----------LENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHTSSSCSSCSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hhhccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996665554 44444 3499999
Q ss_pred HHHHHh---CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 671 GCVFNA---QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 671 g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|..+|++++...|++.++...+....
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999888777664443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.04 Aligned_cols=443 Identities=17% Similarity=0.128 Sum_probs=352.5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+.+++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH---HHHHHHHHHHcCChH
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV---RSDLGNLLKALGRLD 161 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~ 161 (904)
++...|++++|+..|+ ++..+|+....+. ..+...+...+|+..+++++...|..... .......+....+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999995 8888888766543 24555666788999999998876644211 112223333444444
Q ss_pred HHHHHHH-----------HHHhh--------HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 162 EAKDLYC-----------VRSDL--------GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 162 ~A~~~~~-----------~~~~l--------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
.+...+. ....+ +......|++++|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-------------------------------- 225 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-------------------------------- 225 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--------------------------------
Confidence 4433330 11111 22233334555555555
Q ss_pred HHHHhhcCchhH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 223 STLAIKQNPLLA-------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 223 ~~~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
++++..+|+++ .++..+|.++...|++++|+..|++++..+|+ +.++..+|.++...|++++|+..|++++
T Consensus 226 -~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 226 -HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -HHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -HHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 47777777764 46788899999999999999999999999999 9999999999999999999999999999
Q ss_pred hhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchh
Q psy17306 296 QYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVH 375 (904)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (904)
+..|+++
T Consensus 304 ~~~~~~~------------------------------------------------------------------------- 310 (537)
T 3fp2_A 304 DLNPEYP------------------------------------------------------------------------- 310 (537)
T ss_dssp HHCTTCH-------------------------------------------------------------------------
T ss_pred ccCCCCH-------------------------------------------------------------------------
Confidence 9988761
Q ss_pred hHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccc
Q psy17306 376 EAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLH 455 (904)
Q Consensus 376 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~ 455 (904)
T Consensus 311 -------------------------------------------------------------------------------- 310 (537)
T 3fp2_A 311 -------------------------------------------------------------------------------- 310 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHH
Q psy17306 456 GIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAA 535 (904)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 535 (904)
T Consensus 311 -------------------------------------------------------------------------------- 310 (537)
T 3fp2_A 311 -------------------------------------------------------------------------------- 310 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 536 ARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 615 (904)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (904)
.++..+|.++...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++.+
T Consensus 311 -----~~~~~l~~~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 311 -----PTYYHRGQMYFILQDYKNAKEDFQK-----------AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1236778888899999999999999 999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhC----------CCHHHHHH
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQ----------GEIWLAIH 685 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~----------g~~~~A~~ 685 (904)
|+++.++..+|.++...|++++|+..|+++++..|+. ...-.....++.+|.++... |++++|+.
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ-----EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-----SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-----hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 9999999999999999999999999877777655431 01111234467888999999 99999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
.|+++++.+|+++.++..+|.++...|++++|+++|++++...++..+....+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 999999999999999999999999999999999999999999988776655443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=322.00 Aligned_cols=410 Identities=14% Similarity=0.137 Sum_probs=305.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
....+...+.+++..+|.++..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY---CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 179 (904)
++.+|+++.++..+|.++...|++++|+..|+++++.+|++. .++..++.++...+ ...+|..+..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~ 155 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------LRSQALNAFG 155 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 88777776643222 2233334445
Q ss_pred cCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy17306 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 259 (904)
Q Consensus 180 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 259 (904)
.|++++|+..+. +++...|.++.++..+|.++...|++++|+..|++
T Consensus 156 ~~~~~~A~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 156 SGDYTAAIAFLD---------------------------------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp HTCHHHHHHHHH---------------------------------HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred cCCHHHHHHHHH---------------------------------HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555553 45555566666666666666666666666666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchh
Q psy17306 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLA 339 (904)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (904)
+++.+|.++.++..+|.++...|++++|+..|++++...|++..
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------------------------ 246 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR------------------------------------ 246 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH------------------------------------
Confidence 66666666666666666666666666666666666655554400
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHh
Q psy17306 340 SAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKID 419 (904)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
T Consensus 247 -------------------------------------------------------------------------------- 246 (450)
T 2y4t_A 247 -------------------------------------------------------------------------------- 246 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 420 FDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 420 ~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
T Consensus 247 -------------------------------------------------------------------------------- 246 (450)
T 2y4t_A 247 -------------------------------------------------------------------------------- 246 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
.+..++. ..
T Consensus 247 ------------------------------------------~~~~~~~--------------~~--------------- 255 (450)
T 2y4t_A 247 ------------------------------------------CFAHYKQ--------------VK--------------- 255 (450)
T ss_dssp ------------------------------------------HHHHHHH--------------HH---------------
T ss_pred ------------------------------------------HHHHHHH--------------HH---------------
Confidence 0000000 00
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID----GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
....+..+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+. .+.+
T Consensus 256 ----~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~ 320 (450)
T 2y4t_A 256 ----KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR-----------VCSE 320 (450)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH-----------HHHH
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH-----------HHHH
Confidence 1223455699999999999999999999999999854 88999999999999999999 6666
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH------------Hhc-----chhHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK------------EAR-----IFDRAN 718 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~------------~~g-----~~~~A~ 718 (904)
+++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..++.+.. ..| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 677789999999999999999999999999999999999999999999996644 344 456778
Q ss_pred HHHHH-hhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 719 TLFYV-SSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 719 ~~~~~-a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
+.|++ ++...|+.............++.++.++++.++..
T Consensus 401 ~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 401 KAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp HHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 88886 77776654332232455667788888888887655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=309.05 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=225.7
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
+..|..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINL------------AAALVAAGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
+|.++...|++++|+..|++++..+|.+. .++..+ |.++...|++++|+..|+++++.+|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999988 776555 667999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHH
Q psy17306 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226 (904)
Q Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 226 (904)
+..+|.++...|++++|+..+ .++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~--------------------------------------------------------~~~ 203 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDL--------------------------------------------------------KAA 203 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHH--------------------------------------------------------HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH--------------------------------------------------------HHH
Confidence 999999999999999999888 677
Q ss_pred hhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Q psy17306 227 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL------------AAALVAAGDMEQAVQAYVTA 294 (904)
Q Consensus 227 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a 294 (904)
+..+|.++.++..+|.++...|++++|+..|++++..+|++...+..+ |.++...|++++|+..|+++
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999887766 78888888888888888888
Q ss_pred HhhCCCc
Q psy17306 295 LQYNPLL 301 (904)
Q Consensus 295 l~~~p~~ 301 (904)
++..|++
T Consensus 284 l~~~p~~ 290 (450)
T 2y4t_A 284 MKTEPSI 290 (450)
T ss_dssp HHHCCSS
T ss_pred HhcCCcc
Confidence 8877765
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=324.93 Aligned_cols=436 Identities=16% Similarity=0.162 Sum_probs=342.1
Q ss_pred HHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy17306 25 ESAERHCMQLWRQETN----NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYR 100 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (904)
+.+...+..+....+. .+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 83 (537)
T 3fp2_A 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83 (537)
T ss_dssp ----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444454444433 468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhh-------
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL------- 173 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l------- 173 (904)
+++..+|+++.++..+|.++...|++++|+..|+ ++..+|+....+.. .+...+...+|+..+......
T Consensus 84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999999999999996 88888876554321 233333344555555211110
Q ss_pred -------HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH-----
Q psy17306 174 -------GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG----- 241 (904)
Q Consensus 174 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg----- 241 (904)
...+....+...++..+. +.....+........++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVN---------------------------------TSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSC---------------------------------CCCSSCSSHHHHHHHHHHHHTC
T ss_pred ccchHhHHHHHHHhcChHHHHHHHh---------------------------------hccccccHHHHHHHHHHHHHHh
Confidence 111222222222222222 22222333333333333
Q ss_pred ---HHHHHhCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCc
Q psy17306 242 ---NVYKERGQLQEALENYRHAVRLKPDFID-------GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEP 311 (904)
Q Consensus 242 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 311 (904)
......|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++..|+.
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 276 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP---------- 276 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc----------
Confidence 3334457899999999999999999865 57788889999999999999999999887753
Q ss_pred ccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhccccc
Q psy17306 312 FVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEP 391 (904)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 391 (904)
T Consensus 277 -------------------------------------------------------------------------------- 276 (537)
T 3fp2_A 277 -------------------------------------------------------------------------------- 276 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCccccc
Q psy17306 392 NGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIP 471 (904)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 471 (904)
T Consensus 277 -------------------------------------------------------------------------------- 276 (537)
T 3fp2_A 277 -------------------------------------------------------------------------------- 276 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh
Q psy17306 472 GKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR 551 (904)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 551 (904)
.++..+|.++.
T Consensus 277 ---------------------------------------------------------------------~~~~~l~~~~~ 287 (537)
T 3fp2_A 277 ---------------------------------------------------------------------NSYIFLALTLA 287 (537)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHTC
T ss_pred ---------------------------------------------------------------------hHHHHHHHHHH
Confidence 12256677788
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
..|++++|+..+++ ++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 288 ~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 288 DKENSQEFFKFFQK-----------AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp CSSCCHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHH-----------HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 89999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH------HHHHHH
Q psy17306 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD------AYINLG 705 (904)
Q Consensus 632 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~la 705 (904)
.|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++. .+..+|
T Consensus 357 ~g~~~~A~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 357 QGKFTESEA-----------FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp TTCHHHHHH-----------HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred cCCHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 999999999 666666778889999999999999999999999999999999877644 366778
Q ss_pred HHHHHh----------cchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 706 NVLKEA----------RIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 706 ~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.++... |++++|+.+|++++...|++..+...++.+....+++.++++.+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999 99999999999999999999999999999999999998888776544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.51 Aligned_cols=434 Identities=16% Similarity=0.138 Sum_probs=348.1
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..+..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHH----------
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLH---------- 190 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~---------- 190 (904)
..+|++++|+..|++++..+|.+......+............+...+ +.++.+...-
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF-------------GDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhccCChhhH
Confidence 99999999999999999999876554433333222221111111110 1111110000
Q ss_pred -hhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH---hCCHHHHHHHHHHHHh----
Q psy17306 191 -TENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE---RGQLQEALENYRHAVR---- 262 (904)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~---- 262 (904)
.......+.................. ..-..|.++..+..+|.++.. .|++++|+..|++++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 221 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTF---------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCC---------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHH---------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence 00000000000000000000000000 001126678899999999887 8999999999999999
Q ss_pred -h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhccc
Q psy17306 263 -L--K-------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMK 332 (904)
Q Consensus 263 -~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 332 (904)
+ + |.++.++..+|.++...|++++|+..|+++++..|+ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~------------------------------ 270 (514)
T 2gw1_A 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-V------------------------------ 270 (514)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-H------------------------------
T ss_pred hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-H------------------------------
Confidence 5 4 444678999999999999999999999999987764 1
Q ss_pred ccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHH
Q psy17306 333 RPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEE 412 (904)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (904)
T Consensus 271 -------------------------------------------------------------------------------- 270 (514)
T 2gw1_A 271 -------------------------------------------------------------------------------- 270 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhH
Q psy17306 413 QFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVE 492 (904)
Q Consensus 413 ~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (904)
T Consensus 271 -------------------------------------------------------------------------------- 270 (514)
T 2gw1_A 271 -------------------------------------------------------------------------------- 270 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
.++..+|.++...|++++|+..+++
T Consensus 271 ------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~------- 295 (514)
T 2gw1_A 271 ------------------------------------------------NSYIYMALIMADRNDSTEYYNYFDK------- 295 (514)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTSSCCTTGGGHHHH-------
T ss_pred ------------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHH-------
Confidence 1236677788889999999999999
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 652 (904)
++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .
T Consensus 296 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~ 360 (514)
T 2gw1_A 296 ----ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET-----------L 360 (514)
T ss_dssp ----HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH-----------H
T ss_pred ----HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH-----------H
Confidence 9999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHH---hcchhHHHHHHHH
Q psy17306 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD------AYINLGNVLKE---ARIFDRANTLFYV 723 (904)
Q Consensus 653 ~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~la~~~~~---~g~~~~A~~~~~~ 723 (904)
+.+++...|+++.++..+|.++...|++++|+..|++++..+|.++. ++..+|.++.. .|++++|+.+|++
T Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 66666778888899999999999999999999999999999998865 99999999999 9999999999999
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 724 SSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 724 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
++...+++..+...++.+....+++.++++.+...
T Consensus 441 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999888888776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=286.80 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
++.++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45666666666666666666666666666666666677777777777777777777777777777766667777777777
Q ss_pred HcCCHHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 122 AAGDMEQAVQAYVTALQYNP---DLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
..|++++|+..|+++++.+| ++..++..++.++.. .....+|..+...|++++|+..+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~A~~~~~------- 144 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-----------QRLRSQALDAFDGADYTAAITFLD------- 144 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCHHHHHHHHH-------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-----------HHHHHHHHHHHHccCHHHHHHHHH-------
Confidence 77777777777777777777 666666666544321 122334445555555555555554
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
+++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 145 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 145 --------------------------KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp --------------------------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred --------------------------HHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777788888888889999999999999999999999998888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 279 VAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
...|++++|+..++++++..|++
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHHHHHhhCccc
Confidence 99999999999999988888877
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=309.18 Aligned_cols=411 Identities=13% Similarity=-0.036 Sum_probs=289.2
Q ss_pred cCCHHHHHHHHHHHHh----hC--CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---------CcccHHHHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWR----QE--TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ---------NPLLAEAYSNLGNV 85 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~ 85 (904)
.++.+.++..+++.+. .. +..+..+..+|.++...|++++|++.|++++++ +|....++.++|.+
T Consensus 24 l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 3445555555554443 22 234667889999999999999999999999886 56678899999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAG--DMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
|..+|++++|+.+|++++.+. +..+.++..+|.++...| ++++|+.+|+++++++|+++.++..++.++.
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~ 183 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY 183 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999863 456788888888887754 6999999999999999999999999988865
Q ss_pred H---cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 156 A---LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 156 ~---~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
. .++.++|+..+ ++++..+|.
T Consensus 184 ~l~~~~~~~~al~~~--------------------------------------------------------~~al~l~p~ 207 (472)
T 4g1t_A 184 RLDNWPPSQNAIDPL--------------------------------------------------------RQAIRLNPD 207 (472)
T ss_dssp HHHHSCCCCCTHHHH--------------------------------------------------------HHHHHHCSS
T ss_pred HhcCchHHHHHHHHH--------------------------------------------------------HHHhhcCCc
Confidence 4 35555565555 688899999
Q ss_pred hHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCC
Q psy17306 233 LAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWN 308 (904)
Q Consensus 233 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 308 (904)
++.++..+|..+.. .|++++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++..|++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------- 280 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN------- 280 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-------
Confidence 99999988877655 4678899999999999999999999999999999999999999999999999988
Q ss_pred CCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcc
Q psy17306 309 TEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQL 388 (904)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 388 (904)
+.++..+|.+
T Consensus 281 ----------------------------------------------------------------------~~~~~~lg~~ 290 (472)
T 4g1t_A 281 ----------------------------------------------------------------------AYLHCQIGCC 290 (472)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2223333332
Q ss_pred cccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcc
Q psy17306 389 VEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKT 468 (904)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 468 (904)
+...+ . .....
T Consensus 291 y~~~~----------------------------~--~~~~~--------------------------------------- 301 (472)
T 4g1t_A 291 YRAKV----------------------------F--QVMNL--------------------------------------- 301 (472)
T ss_dssp HHHHH----------------------------H--HHHHC---------------------------------------
T ss_pred HHHHH----------------------------H--HhhhH---------------------------------------
Confidence 20000 0 00000
Q ss_pred cccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCch
Q psy17306 469 VIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPD 548 (904)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 548 (904)
.....+.
T Consensus 302 -------------------------------------------------------------------------~~~~~~~ 308 (472)
T 4g1t_A 302 -------------------------------------------------------------------------RENGMYG 308 (472)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 0011111
Q ss_pred hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHHHH
Q psy17306 549 LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID---GYINL 625 (904)
Q Consensus 549 ~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l 625 (904)
.....+.++.|+..+++ ++..+|.++.++..+|.++...|++++|+.+|+++++++|++.. ++.++
T Consensus 309 ~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~ 377 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKK-----------ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRY 377 (472)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH-----------HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 22223345677777777 88999999999999999999999999999999999998887643 45667
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 626 AAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 626 g~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
|.+ +...|++++|+..|++++ +++|+...... ....+...+++++..+|+++.++.+|
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal-----------~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGV-----------KINQKSREKEK----------MKDKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHH-----------HSCCCCHHHHH----------HHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-----------hcCcccHHHHH----------HHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 765 456789999999555444 45555433221 22445667788888888888888888
Q ss_pred HHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 705 GNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 705 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
|.+|..+|++++|+++|++|++..+..++....+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHCC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 8888888888888888888888877665554433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=283.19 Aligned_cols=325 Identities=16% Similarity=0.125 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKP---DFIDGYINL------------AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
..|++++|+..|++++..+| +++.++..+ |.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999 888888777 799999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch
Q psy17306 153 LLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232 (904)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 232 (904)
++...|++++|+..+ .+++...|.
T Consensus 163 ~~~~~~~~~~A~~~~--------------------------------------------------------~~~~~~~~~ 186 (359)
T 3ieg_A 163 CFIKEGEPRKAISDL--------------------------------------------------------KAASKLKSD 186 (359)
T ss_dssp HHHHTTCHHHHHHHH--------------------------------------------------------HHHHTTCSC
T ss_pred HHHHCCCHHHHHHHH--------------------------------------------------------HHHHHhCCC
Confidence 999999999998888 688889999
Q ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI------------NLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 233 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
++.++..+|.++...|++++|+..|+++++.+|++..++. .+|.++...|++++|+..++++++..|+
T Consensus 187 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988654 4488899999999999999999999987
Q ss_pred cccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHH
Q psy17306 301 LKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTD 380 (904)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (904)
++.
T Consensus 267 ~~~----------------------------------------------------------------------------- 269 (359)
T 3ieg_A 267 VAE----------------------------------------------------------------------------- 269 (359)
T ss_dssp SHH-----------------------------------------------------------------------------
T ss_pred chH-----------------------------------------------------------------------------
Confidence 710
Q ss_pred HHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCcccccccccc
Q psy17306 381 LIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGA 460 (904)
Q Consensus 381 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 460 (904)
T Consensus 270 -------------------------------------------------------------------------------- 269 (359)
T 3ieg_A 270 -------------------------------------------------------------------------------- 269 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHH
Q psy17306 461 FSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATK 540 (904)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 540 (904)
...
T Consensus 270 -----------------------------------------------------------------------------~~~ 272 (359)
T 3ieg_A 270 -----------------------------------------------------------------------------YTV 272 (359)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 000
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.++..+|.++...|++++|+..+++ ++..+|+++.+++.+|.++...|++++|+..|+++++++|++..
T Consensus 273 ~~~~~la~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 273 RSKERICHCFSKDEKPVEAIRICSE-----------VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH-----------HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 1236678888999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q psy17306 621 GYINLAAALVAAG 633 (904)
Q Consensus 621 a~~~lg~~~~~~g 633 (904)
++..++.++...+
T Consensus 342 ~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 342 IREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=284.37 Aligned_cols=378 Identities=15% Similarity=0.026 Sum_probs=276.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQ---------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN--- 72 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 72 (904)
+..+..+..+|.++...|++++|++.|+++++. +|....++..+|.+|...|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344566788999999999999999999999875 56778889999999999999999999999999863
Q ss_pred -----cccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCC
Q psy17306 73 -----PLLAEAYSNLGNVYKER--GQLQEALENYRHAVRLKPDFIDGYINLAAALVA---AGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 73 -----p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~ 142 (904)
+..+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++.++|+..++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 34578888888887765 579999999999999999999999999988654 57788999999999999999
Q ss_pred hhhHHHHHHHHHHHcC----ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHH
Q psy17306 143 LYCVRSDLGNLLKALG----RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLE 218 (904)
Q Consensus 143 ~~~~~~~la~~~~~~~----~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (904)
++.++..+|..+...+ ++++|...+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~--------------------------------------------------- 236 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLV--------------------------------------------------- 236 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHH---------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHH---------------------------------------------------
Confidence 9999988887776554 444555544
Q ss_pred HhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------------
Q psy17306 219 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---------------- 282 (904)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------- 282 (904)
++++..+|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...+
T Consensus 237 -----~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 237 -----EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp -----HHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred -----HHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999986532
Q ss_pred ---CHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhh
Q psy17306 283 ---DMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIE 359 (904)
Q Consensus 283 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (904)
.+++|+..+++++..+|...
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~--------------------------------------------------------- 334 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLF--------------------------------------------------------- 334 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTC---------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHhhcCCchh---------------------------------------------------------
Confidence 34566666666666666551
Q ss_pred hccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcC-CCcchhh
Q psy17306 360 CASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDH-PKLTKAD 438 (904)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-p~~~~~~ 438 (904)
.....++.++...|+ +++|+..|++++.. |....
T Consensus 335 -------------~~~~~lg~~~~~~~~------------------------------~~~A~~~~~kaL~~~~~~~~-- 369 (472)
T 4g1t_A 335 -------------RVCSILASLHALADQ------------------------------YEEAEYYFQKEFSKELTPVA-- 369 (472)
T ss_dssp -------------CCHHHHHHHHHHTTC------------------------------HHHHHHHHHHHHHSCCCHHH--
T ss_pred -------------hhhhhHHHHHHHhcc------------------------------HHHHHHHHHHHHhcCCCChH--
Confidence 123333444444444 66677777776655 22111
Q ss_pred hHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh
Q psy17306 439 KTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD 518 (904)
Q Consensus 439 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 518 (904)
T Consensus 370 -------------------------------------------------------------------------------- 369 (472)
T 4g1t_A 370 -------------------------------------------------------------------------------- 369 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcchHHHHHHHHHHHhhCchh-HhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH
Q psy17306 519 SGKSWRTNPEHPNYVAAARATKYVYNVEPDL-TREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 597 (904)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~ 597 (904)
.. .++..+|.+ ....|++++|+..|++ ++.+.|.+.....
T Consensus 370 -------------~~-------~~~~~~~~~~~~~~~~~~~Ai~~y~k-----------al~i~~~~~~~~~-------- 410 (472)
T 4g1t_A 370 -------------KQ-------LLHLRYGNFQLYQMKCEDKAIHHFIE-----------GVKINQKSREKEK-------- 410 (472)
T ss_dssp -------------HH-------HHHHHHHHHHHHTSSCHHHHHHHHHH-----------HHHSCCCCHHHHH--------
T ss_pred -------------HH-------HHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHhcCcccHHHHH--------
Confidence 10 112333432 4567899999999999 9999998754332
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHH
Q psy17306 598 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672 (904)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~ 672 (904)
....+...++++++.+|+++.++.++|.+|..+|++++|++ +|+++++..|.+|.+...+|.
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~-----------~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE-----------DSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCCCcHhhcCCC
Confidence 23455677889999999999999999999999999999999 666777777888888877763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=264.56 Aligned_cols=399 Identities=18% Similarity=0.136 Sum_probs=287.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQ----CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALE 97 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 97 (904)
.++..+.++. .+.++.+++.+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455565554 35678888888888887 78888888888888875 567788888888888 888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCV 169 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~ 169 (904)
+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. +++.++..+|.+|.. .+++++|+..|
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~-- 174 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWY-- 174 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH--
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH--
Confidence 88888765 467888888888888 78888888888888764 467788888888887 77888888887
Q ss_pred HHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH---
Q psy17306 170 RSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE--- 246 (904)
Q Consensus 170 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 246 (904)
+++... .++.+++.+|.+|..
T Consensus 175 ------------------------------------------------------~~a~~~--~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 175 ------------------------------------------------------SKAAEQ--GNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp ------------------------------------------------------HHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred ------------------------------------------------------HHHHHC--CCHHHHHHHHHHHhcCCC
Confidence 344433 356777888888877
Q ss_pred -hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHH
Q psy17306 247 -RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKA 321 (904)
Q Consensus 247 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a 321 (904)
.+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..+..
T Consensus 199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~-------------------- 256 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI-------------------- 256 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH--------------------
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH--------------------
Confidence 78888888888887765 457778888888876 778888888888877653321
Q ss_pred HHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccc
Q psy17306 322 LWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIY 401 (904)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 401 (904)
+.+.+|.++......
T Consensus 257 -----------------------------------------------------------a~~~lg~~y~~g~~~------ 271 (490)
T 2xm6_A 257 -----------------------------------------------------------AQFRLGYILEQGLAG------ 271 (490)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHTTTS------
T ss_pred -----------------------------------------------------------HHHHHHHHHHCCCCC------
Confidence 112222211110000
Q ss_pred cccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhc
Q psy17306 402 KDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIR 481 (904)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (904)
..+.++|+..|+++++.
T Consensus 272 -------------~~d~~~A~~~~~~a~~~-------------------------------------------------- 288 (490)
T 2xm6_A 272 -------------AKEPLKALEWYRKSAEQ-------------------------------------------------- 288 (490)
T ss_dssp -------------SCCHHHHHHHHHHHHTT--------------------------------------------------
T ss_pred -------------CCCHHHHHHHHHHHHHc--------------------------------------------------
Confidence 00044455555554432
Q ss_pred ccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc-----CCh
Q psy17306 482 IVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG-----GSI 556 (904)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~ 556 (904)
.++. ++..+|.++... +++
T Consensus 289 ----------------------------------------------~~~~----------a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 289 ----------------------------------------------GNSD----------GQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp ----------------------------------------------TCHH----------HHHHHHHHHHHCBTTBCCCH
T ss_pred ----------------------------------------------CCHH----------HHHHHHHHHHcCCCCCcCCH
Confidence 0111 125566666665 889
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--
Q psy17306 557 PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVA-- 631 (904)
Q Consensus 557 ~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-- 631 (904)
++|+.+|++ +++.. ++.+++++|.+|...| ++++|+.+|+++++. +++.+++++|.+|..
T Consensus 313 ~~A~~~~~~-----------a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 313 EQAISWYTK-----------SAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHHHHHHHH-----------HHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-----------HHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 999999988 76653 4678899999998866 788999999999887 568899999999998
Q ss_pred --cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcC---cCcHHHHH
Q psy17306 632 --AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLD---PNFLDAYI 702 (904)
Q Consensus 632 --~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~---p~~~~a~~ 702 (904)
.+++++|+.+|+++ ++. .++.++++||.+|.. .+++++|+.+|++|++.+ |.++.+..
T Consensus 378 g~~~~~~~A~~~~~~A-----------~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKA-----------AEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp SSCCCHHHHHHHHHHH-----------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-----------HhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88999999955544 333 347889999999998 899999999999999998 45888888
Q ss_pred HHHHHHHHhcchhH--HHHHHHHh
Q psy17306 703 NLGNVLKEARIFDR--ANTLFYVS 724 (904)
Q Consensus 703 ~la~~~~~~g~~~~--A~~~~~~a 724 (904)
++|.++.......+ |..+|+++
T Consensus 445 ~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 445 TEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHH
Confidence 88888765433222 44444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=262.15 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=274.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH
Q psy17306 31 CMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110 (904)
Q Consensus 31 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 110 (904)
....+...|.++..+..+|..++..|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34556667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHH
Q psy17306 111 DGYINLAAALVAAG-DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189 (904)
Q Consensus 111 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~ 189 (904)
.++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...|++++|+..+
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---------------------- 148 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY---------------------- 148 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH----------------------
Confidence 99999999999999 9999999999999999999999999999999999999998888
Q ss_pred HhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH
Q psy17306 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 269 (904)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 269 (904)
.+++...|.+...+..+|.++...|++++|+..|++++..+|+++.
T Consensus 149 ----------------------------------~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 194 (330)
T 3hym_B 149 ----------------------------------FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF 194 (330)
T ss_dssp ----------------------------------HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ----------------------------------HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH
Confidence 6888888988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhh
Q psy17306 270 GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQ 349 (904)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (904)
++..+|.++...|++++|+..++++++..|......
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------------------------------------------- 230 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV-------------------------------------------- 230 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC--------------------------------------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc--------------------------------------------
Confidence 999999999999999999999999998876551000
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
T Consensus 231 -------------------------------------------------------------------------------- 230 (330)
T 3hym_B 231 -------------------------------------------------------------------------------- 230 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
T Consensus 231 -------------------------------------------------------------------------------- 230 (330)
T 3hym_B 231 -------------------------------------------------------------------------------- 230 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYS 589 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~ 589 (904)
..|..+ .++..+|.++...|++++|+..+++ ++..+|+++.++.
T Consensus 231 ---------------~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~-----------a~~~~~~~~~~~~ 274 (330)
T 3hym_B 231 ---------------TVDKWE----------PLLNNLGHVCRKLKKYAEALDYHRQ-----------ALVLIPQNASTYS 274 (330)
T ss_dssp ---------------TTTTCC----------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHSTTCSHHHH
T ss_pred ---------------cccHHH----------HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHhhCccchHHHH
Confidence 001111 1347889999999999999999999 9999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHcCCHH
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL-VAAGDME 636 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~ 636 (904)
.+|.++...|++++|+..|+++++++|+++.++..+|.++ ...|+.+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999998 5566543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=262.21 Aligned_cols=299 Identities=16% Similarity=0.103 Sum_probs=245.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHc
Q psy17306 101 HAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKAL 180 (904)
Q Consensus 101 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 180 (904)
..+...|.++..+..+|..+...|++++|+..++++++.+|.+..++..++.++...|++++|+..+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~------------- 79 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS------------- 79 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHH-------------
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHH-------------
Confidence 4444556667777778888888888888888888888888877777777777777777777777776
Q ss_pred CCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q psy17306 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRH 259 (904)
Q Consensus 181 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 259 (904)
.+++..+|.++.++..+|.++...| ++++|+.+|++
T Consensus 80 -------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 116 (330)
T 3hym_B 80 -------------------------------------------HKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSK 116 (330)
T ss_dssp -------------------------------------------HHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5667777777888888888888888 88888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchh
Q psy17306 260 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLA 339 (904)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (904)
++..+|.++.++..+|.++...|++++|+..++++++..|+..
T Consensus 117 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------- 159 (330)
T 3hym_B 117 ATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH------------------------------------- 159 (330)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-------------------------------------
T ss_pred HHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-------------------------------------
Confidence 8888888888899999999999999999999998888887661
Q ss_pred hhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHh
Q psy17306 340 SAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKID 419 (904)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (904)
T Consensus 160 -------------------------------------------------------------------------------- 159 (330)
T 3hym_B 160 -------------------------------------------------------------------------------- 159 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHH
Q psy17306 420 FDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYL 499 (904)
Q Consensus 420 ~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 499 (904)
T Consensus 160 -------------------------------------------------------------------------------- 159 (330)
T 3hym_B 160 -------------------------------------------------------------------------------- 159 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 500 NELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
.++..+|.++...|++++|+..+++ ++.
T Consensus 160 -----------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~-----------al~ 187 (330)
T 3hym_B 160 -----------------------------------------LPMLYIGLEYGLTNNSKLAERFFSQ-----------ALS 187 (330)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHT
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHH-----------HHH
Confidence 0124467777788888999999888 888
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK---------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
.+|.++.++..+|.++...|++++|+..|+++++.. |..+.++.++|.++...|++++|+.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---------- 257 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD---------- 257 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH----------
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH----------
Confidence 889999999999999999999999999999999886 6677899999999999999999999
Q ss_pred hhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH-HHhcchh
Q psy17306 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL-KEARIFD 715 (904)
Q Consensus 651 ~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~~~ 715 (904)
.+.++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++ ...|+.+
T Consensus 258 -~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 -YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred -HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 666666677888899999999999999999999999999999999999999999988 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=266.94 Aligned_cols=329 Identities=19% Similarity=0.191 Sum_probs=253.9
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCChh----hHHHHHHHHHHHcCChHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ-AYVTALQYNPDLY----CVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~ 162 (904)
..+.|..+...++.+....|. ++...|++++|+. .|++++...|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 334444455555554444433 4555688888888 8888888887764 557888888888888888
Q ss_pred HHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHH
Q psy17306 163 AKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGN 242 (904)
Q Consensus 163 A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~ 242 (904)
|+..+ .+++..+|.++.++..+|.
T Consensus 83 A~~~~--------------------------------------------------------~~al~~~p~~~~~~~~l~~ 106 (368)
T 1fch_A 83 AVLLF--------------------------------------------------------EAAVQQDPKHMEAWQYLGT 106 (368)
T ss_dssp HHHHH--------------------------------------------------------HHHHHSCTTCHHHHHHHHH
T ss_pred HHHHH--------------------------------------------------------HHHHHhCCCCHHHHHHHHH
Confidence 88877 6778888888999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKAL 322 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~ 322 (904)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+... .+...
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~------------ 172 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH--LVTPA------------ 172 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG--GCC--------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH--HHHHH------------
Confidence 9999999999999999999999999999999999999999999999999999999998721 00000
Q ss_pred HHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCccccccccc
Q psy17306 323 WRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYK 402 (904)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 402 (904)
+..
T Consensus 173 ---------------------------------------------------------------~~~-------------- 175 (368)
T 1fch_A 173 ---------------------------------------------------------------EEG-------------- 175 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------HHH--------------
Confidence 000
Q ss_pred ccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcc
Q psy17306 403 DVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRI 482 (904)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (904)
.. .
T Consensus 176 -----------------------~~---~--------------------------------------------------- 178 (368)
T 1fch_A 176 -----------------------AG---G--------------------------------------------------- 178 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------hh---h---------------------------------------------------
Confidence 00 0
Q ss_pred cCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHH
Q psy17306 483 VPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562 (904)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 562 (904)
. .....+..++.++ ..|++++|+..
T Consensus 179 ------------------------------------------~------------~~~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 179 ------------------------------------------A------------GLGPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp -------------------------------------------------------------CTTHHHH-HHHHHHHHHHH
T ss_pred ------------------------------------------h------------cccHHHHHHHHHh-hcccHHHHHHH
Confidence 0 0000114455555 78999999999
Q ss_pred HHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 563 ECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 640 (904)
Q Consensus 563 ~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 640 (904)
|++ ++..+|. ++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+.
T Consensus 204 ~~~-----------a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 204 FLA-----------AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHH-----------HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH-----------HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999 9999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc-----------HHHHHHHHHHHH
Q psy17306 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF-----------LDAYINLGNVLK 709 (904)
Q Consensus 641 ~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~la~~~~ 709 (904)
.+.++++.+|+++.++..+|.++...|++++|+..|+++++++|++ +.++.++|.++.
T Consensus 273 -----------~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 273 -----------AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp -----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 6666667788999999999999999999999999999999999988 899999999999
Q ss_pred HhcchhHHHHHHHHhhcc
Q psy17306 710 EARIFDRANTLFYVSSYF 727 (904)
Q Consensus 710 ~~g~~~~A~~~~~~a~~~ 727 (904)
.+|++++|..+++++++.
T Consensus 342 ~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 342 MLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTCGGGHHHHHTTCHHH
T ss_pred HhCChHhHHHhHHHHHHH
Confidence 999999999999877653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-26 Score=255.68 Aligned_cols=383 Identities=17% Similarity=0.116 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAV 130 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 130 (904)
..++..+.++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+
T Consensus 24 ~~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 24 NVNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp -CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred hHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345666766654 5678999999999999 89999999999999986 678999999999999 99999999
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHH
Q psy17306 131 QAYVTALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV 206 (904)
Q Consensus 131 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 206 (904)
.+|+++.+. +++.++..+|.+|.. .+++++|+.+|
T Consensus 100 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~--------------------------------------- 138 (490)
T 2xm6_A 100 IWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWF--------------------------------------- 138 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH---------------------------------------
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH---------------------------------------
Confidence 999999875 578899999999999 89999999999
Q ss_pred HhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q psy17306 207 CNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA-- 280 (904)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 280 (904)
+++... .++.+++.+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|..
T Consensus 139 -----------------~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 139 -----------------RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp -----------------HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred -----------------HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Confidence 344443 468899999999998 89999999999999986 579999999999998
Q ss_pred --cCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHh
Q psy17306 281 --AGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358 (904)
Q Consensus 281 --~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (904)
.+++++|+.+|+++.+.....
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~~--------------------------------------------------------- 220 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDEL--------------------------------------------------------- 220 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHH---------------------------------------------------------
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---------------------------------------------------------
Confidence 899999999999999864322
Q ss_pred hhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhh
Q psy17306 359 ECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKAD 438 (904)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~ 438 (904)
+.+.+|.++...... ..++++|+..|++++...
T Consensus 221 ----------------------a~~~lg~~y~~g~g~-------------------~~~~~~A~~~~~~a~~~~------ 253 (490)
T 2xm6_A 221 ----------------------GQLHLADMYYFGIGV-------------------TQDYTQSRVLFSQSAEQG------ 253 (490)
T ss_dssp ----------------------HHHHHHHHHHHTSSS-------------------CCCHHHHHHHHHHHHTTT------
T ss_pred ----------------------HHHHHHHHHHcCCCC-------------------CCCHHHHHHHHHHHHHCC------
Confidence 222223222110000 001566777777665531
Q ss_pred hHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHh
Q psy17306 439 KTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLD 518 (904)
Q Consensus 439 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 518 (904)
T Consensus 254 -------------------------------------------------------------------------------- 253 (490)
T 2xm6_A 254 -------------------------------------------------------------------------------- 253 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcchHHHHHHHHHHHhhCchhHhh----cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHH
Q psy17306 519 SGKSWRTNPEHPNYVAAARATKYVYNVEPDLTRE----GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 594 (904)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~ 594 (904)
++. ++..+|.++.. .+++++|+.+|++ +.+. .++.+++.+|.+
T Consensus 254 ----------~~~----------a~~~lg~~y~~g~~~~~d~~~A~~~~~~-----------a~~~--~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 254 ----------NSI----------AQFRLGYILEQGLAGAKEPLKALEWYRK-----------SAEQ--GNSDGQYYLAHL 300 (490)
T ss_dssp ----------CHH----------HHHHHHHHHHHTTTSSCCHHHHHHHHHH-----------HHTT--TCHHHHHHHHHH
T ss_pred ----------CHH----------HHHHHHHHHHCCCCCCCCHHHHHHHHHH-----------HHHc--CCHHHHHHHHHH
Confidence 111 22566666666 8999999999999 7654 567899999999
Q ss_pred HHHc-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 595 YKER-----GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 595 ~~~~-----g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
|... +++++|+..|+++++. .++.+++++|.+|...| ++++|+.+|+ ++++. +++.+
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~-----------~a~~~--~~~~a 365 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFR-----------KAAAK--GEKAA 365 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHH-----------HHHHT--TCHHH
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHH-----------HHHHC--CCHHH
Confidence 9998 8999999999999987 45789999999999877 7899999555 44444 46789
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccCC---hhhHH
Q psy17306 667 WSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMIT---DEDID 735 (904)
Q Consensus 667 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~---~~~~~ 735 (904)
++++|.+|.. .+++++|+.+|+++++.. ++.++++||.+|.. .+++++|..+|+++++..++ +....
T Consensus 366 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 366 QFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 9999999999 899999999999999864 68999999999999 89999999999999998854 55555
Q ss_pred HHHHHH
Q psy17306 736 VILERC 741 (904)
Q Consensus 736 ~~l~~~ 741 (904)
..++..
T Consensus 444 ~~l~~~ 449 (490)
T 2xm6_A 444 ITEKKL 449 (490)
T ss_dssp HHHTTS
T ss_pred HHHHhc
Confidence 554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=264.31 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=87.8
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---- 618 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 618 (904)
+..+|.++...|++++|+..|++ ++..+|.++.+++.+|.++...|++++|+..|++++++.|++
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 322 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRR-----------ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc
Confidence 36778888899999999999999 999999999999999999999999999999999999999888
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 619 -------IDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 619 -------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
..+|..+|.++..+|++++|...+.++++
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 323 GEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp --CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 89999999999999999999997776666
|
| >2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=249.64 Aligned_cols=113 Identities=31% Similarity=0.558 Sum_probs=74.4
Q ss_pred cccCCchhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCC---C
Q psy17306 791 HWIEPPKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNP---E 867 (904)
Q Consensus 791 ~w~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 867 (904)
.||+|++|||+.+|+||.||+++|+++.++.|++||+||+++|+||||||+||.||||+|++||+|.+||+||+++ +
T Consensus 1 ~wI~p~KRERK~nYsvd~yyk~~l~~~~~~~pk~pr~PK~p~~~D~QFyp~rL~eL~ekE~~~~~k~~~y~~~~~~~~~~ 80 (374)
T 2y9y_A 1 MLLNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVFHSHQLQPPQLQVLYEKERMWTAKKTGYVPTMDDVKAA 80 (374)
T ss_dssp -----------------------------CCCCCCCCCCCCCCCSCCSCCTTHHHHHHHHHHHHHHTTTCCCCHHHHTTT
T ss_pred CCCCCccccccccCCccHHHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcHHHHHHHHHHHHHHHHHhCCcCCccccccc
Confidence 4999999999999999999999999877788999999999999999999999999999999999999999999743 1
Q ss_pred CC-----cchHHHHHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 868 LG-----SDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 868 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
.| .+...++.++|+.|||++||||||+++|++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~eq~~id~~~~LTeEE~~EKe~LL~e 121 (374)
T 2y9y_A 81 YGKISDQEEQKEKLELLKLSVNNSQPLTEEEEKMKADWESE 121 (374)
T ss_dssp TCCCCSTTTHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHhhhccccccCCCCHHHHHHHHHHHHh
Confidence 11 1223477899999999999999999999999986
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-25 Score=254.35 Aligned_cols=427 Identities=11% Similarity=0.034 Sum_probs=316.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|....+++..+.. ...|++++|...|+++++.+|.++.+|..++..+...|++++|..+|++++...| +...|..++
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 35566778888874 7788999999999999999999999999999999999999999999999999888 466787777
Q ss_pred H-HHHHhCcHHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhcCCChh--
Q psy17306 84 N-VYKERGQLQEALE----NYRHAVRL---KPDFIDGYINLAAALVA---------AGDMEQAVQAYVTALQYNPDLY-- 144 (904)
Q Consensus 84 ~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~-- 144 (904)
. +....|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|+..|+++++ .|...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 5 3345677776655 77777654 56667788887777655 6888999999999988 56542
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
..|.....+....|. ..+...+ ....+++..|...+.... .+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l---------~~~~~~~~~A~~~~~~~~---------------------------~~~ 208 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMI---------EDRSRDYMNARRVAKEYE---------------------------TVM 208 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHH---------HTTHHHHHHHHHHHHHHH---------------------------HHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHH---------HHhhHHHHHHHHHHHHHH---------------------------HHH
Confidence 333333332222221 0111111 112344555555443200 000
Q ss_pred HHhh-----cCch-------hHHHHHHHHHHHHH----hCCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q psy17306 225 LAIK-----QNPL-------LAEAYSNLGNVYKE----RGQL----QEALENYRHAVRLKPDFIDGYINLAAALVA---- 280 (904)
Q Consensus 225 ~~~~-----~~~~-------~~~~~~~lg~~~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 280 (904)
..+. ..|. ....|......... .++. ..++..|++++..+|.++.+|+.+|..+..
T Consensus 209 ~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 209 KGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchh
Confidence 1111 1221 12333333322221 1232 478899999999999999999999999986
Q ss_pred ---cCCHH-------HHHHHHHHHHh-hCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhh
Q psy17306 281 ---AGDME-------QAVQAYVTALQ-YNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQ 349 (904)
Q Consensus 281 ---~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (904)
.|+++ +|+..|+++++ ..|++
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------------------------------------------------ 320 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKN------------------------------------------------ 320 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------------------------------------------------
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHhCccc------------------------------------------------
Confidence 68876 67777777765 55554
Q ss_pred hhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhh
Q psy17306 350 EKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAI 429 (904)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 429 (904)
T Consensus 321 -------------------------------------------------------------------------------- 320 (530)
T 2ooe_A 321 -------------------------------------------------------------------------------- 320 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcCh
Q psy17306 430 DHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSP 509 (904)
Q Consensus 430 ~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 509 (904)
T Consensus 321 -------------------------------------------------------------------------------- 320 (530)
T 2ooe_A 321 -------------------------------------------------------------------------------- 320 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH-HHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA-EAY 588 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~-~~~ 588 (904)
+ .+|..+|.++...|++++|...|++ ++..+|.++ .+|
T Consensus 321 --------------------~----------~l~~~~~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~ 359 (530)
T 2ooe_A 321 --------------------M----------LLYFAYADYEESRMKYEKVHSIYNR-----------LLAIEDIDPTLVY 359 (530)
T ss_dssp --------------------H----------HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHSSSSCHHHHH
T ss_pred --------------------H----------HHHHHHHHHHHhcCCHHHHHHHHHH-----------HhCccccCchHHH
Confidence 1 1236667778888999999999999 999999875 699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHH
Q psy17306 589 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA-LVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAW 667 (904)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~ 667 (904)
..+|.++.+.|++++|...|+++++..|.....+...+.+ +...|++++|.. .|.++++..|+++.+|
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~-----------~~e~al~~~p~~~~~~ 428 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-----------IFELGLKKYGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH-----------HHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999888887777766 446899999999 6666667788999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH----HHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 668 SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL----DAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 668 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
..+|.++...|+.++|...|++++...|.++ .+|...+......|+.+.+..+++++++..|+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999999999999999999999999876554 48888888899999999999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=252.90 Aligned_cols=293 Identities=19% Similarity=0.186 Sum_probs=245.0
Q ss_pred HHHHHHHHhcCCChh----hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHH
Q psy17306 130 VQAYVTALQYNPDLY----CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAI 205 (904)
Q Consensus 130 ~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 205 (904)
...+.+++...+.++ ..++.+|.++...|++++|+..|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~-------------------------------------- 88 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFM-------------------------------------- 88 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHH--------------------------------------
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHH--------------------------------------
Confidence 344555555555544 45889999999999999888888
Q ss_pred HHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy17306 206 VCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285 (904)
Q Consensus 206 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (904)
++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++
T Consensus 89 ------------------~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 89 ------------------EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp ------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred ------------------HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 68888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy17306 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDL 365 (904)
Q Consensus 286 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+|+..|+++++..|+... .|..
T Consensus 151 ~A~~~~~~al~~~p~~~~--~~~~-------------------------------------------------------- 172 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKY--LVKN-------------------------------------------------------- 172 (365)
T ss_dssp HHHHHHHHHHHHCHHHHC--C-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhCccchH--HHhh--------------------------------------------------------
Confidence 999999999999887611 0000
Q ss_pred cccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhh
Q psy17306 366 HSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMS 445 (904)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~ 445 (904)
++
T Consensus 173 -------------------~~----------------------------------------------------------- 174 (365)
T 4eqf_A 173 -------------------KK----------------------------------------------------------- 174 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------hc-----------------------------------------------------------
Confidence 00
Q ss_pred hcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhccccccc
Q psy17306 446 RWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRT 525 (904)
Q Consensus 446 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 525 (904)
T Consensus 175 -------------------------------------------------------------------------------- 174 (365)
T 4eqf_A 175 -------------------------------------------------------------------------------- 174 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHH
Q psy17306 526 NPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQE 603 (904)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~ 603 (904)
....++..+|.++...|++++|+..|++ ++..+|. ++.+++.+|.++...|++++
T Consensus 175 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~~~l~~~~~~~g~~~~ 231 (365)
T 4eqf_A 175 ------------GSPGLTRRMSKSPVDSSVLEGVKELYLE-----------AAHQNGDMIDPDLQTGLGVLFHLSGEFNR 231 (365)
T ss_dssp --------------------------CCHHHHHHHHHHHH-----------HHHHSCSSCCHHHHHHHHHHHHHHTCHHH
T ss_pred ------------cchHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHHhCcCccCHHHHHHHHHHHHHCCCHHH
Confidence 0001236778888999999999999999 9999999 89999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHH
Q psy17306 604 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683 (904)
Q Consensus 604 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A 683 (904)
|+..|+++++.+|+++.++.++|.++...|++++|+. .+.++++.+|+++.++.++|.+|...|++++|
T Consensus 232 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 232 AIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE-----------AYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999 66666777889999999999999999999999
Q ss_pred HHHHHHHHhcCcC------------cHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 684 IHHFEKAVSLDPN------------FLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 684 ~~~~~~al~~~p~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
+..|+++++++|+ +..++..++.++..+|+.+.|..+.++.++..
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999887 36789999999999999999999988766543
|
| >1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-29 Score=238.74 Aligned_cols=108 Identities=86% Similarity=1.311 Sum_probs=80.7
Q ss_pred chhhhhhhcchhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCCcchHHH
Q psy17306 796 PKRERKANYAVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKA 875 (904)
Q Consensus 796 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (904)
++|||+.+|+||.||+++|.++.++.|++||+||+++|+|||||||||.||||+|++||+|++||+||..++....+..+
T Consensus 1 ~kRERK~~Ys~d~yy~~~~~~~~~~~~k~pr~pK~~~~~D~QFy~~rL~eL~ekE~~~~~k~~~~~~~~~~~~~~~~~~~ 80 (304)
T 1ofc_X 1 GAMERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKV 80 (304)
T ss_dssp ---------CHHHHHHHHC--------CCCCCTTCCCCCGGGCCCHHHHHHHHHHHHHHHHHTTCCCCCCC-------HH
T ss_pred CCccccccCCchHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCcHHHHHHHHHHHHHHHHHhCCcCCCcccchhhHHHH
Confidence 48999999999999999999877788999999999999999999999999999999999999999998876543332346
Q ss_pred HHHHHhhhhccCCCCHHHHHHHHHHhhc
Q psy17306 876 QKEEQKKIDESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (904)
+.++|+.|||++||||||+++|++|++|
T Consensus 81 ~~~eq~~id~~~~LTeeE~~eKe~Ll~e 108 (304)
T 1ofc_X 81 QREEQRKIDEAEPLTEEEIQEKENLLSQ 108 (304)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHTTS
T ss_pred HHHHhhccccCCCCCHHHHHHHHHHHHh
Confidence 7799999999999999999999999986
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-25 Score=250.92 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=144.0
Q ss_pred hhCchhHhh-------cCChh-------HHHHHHHHHhhhhhhHHHHHHH-hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 544 NVEPDLTRE-------GGSIP-------ITLTFECRKLDKSAHFSTLAIK-QNPLLAEAYSNLGNVYKERGQLQEALENY 608 (904)
Q Consensus 544 ~~l~~~~~~-------~~~~~-------~A~~~~~~~l~~a~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 608 (904)
...|..+.. .|+++ +|+..|++ ++. ..|++..+|..+|.++...|++++|...|
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~-----------Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER-----------AISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-----------HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH-----------HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555553 68876 88888888 997 79999999999999999999999999999
Q ss_pred HHHHhhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH-HHhCCCHHHHHHH
Q psy17306 609 RHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV-FNAQGEIWLAIHH 686 (904)
Q Consensus 609 ~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~-~~~~g~~~~A~~~ 686 (904)
++++++.|.++ .+|..+|.++.+.|++++|.. .|.++++..|.....+...+.+ +...|++++|...
T Consensus 345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-----------~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-----------IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHhCccccCchHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999999986 699999999999999999999 5555555566666667666665 4469999999999
Q ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 687 FEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 687 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
|+++++.+|+++.++.+++.++...|+.++|..+|++++...+.+
T Consensus 414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999986544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=252.50 Aligned_cols=275 Identities=19% Similarity=0.159 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA 156 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 156 (904)
..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHH
Q psy17306 157 LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEA 236 (904)
Q Consensus 157 ~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (904)
.|++++|+..+ ++++...|.+...
T Consensus 146 ~g~~~~A~~~~--------------------------------------------------------~~al~~~p~~~~~ 169 (365)
T 4eqf_A 146 TSHQQDACEAL--------------------------------------------------------KNWIKQNPKYKYL 169 (365)
T ss_dssp TTCHHHHHHHH--------------------------------------------------------HHHHHHCHHHHCC
T ss_pred cccHHHHHHHH--------------------------------------------------------HHHHHhCccchHH
Confidence 77777777766 4555555555444
Q ss_pred H----------HHHHHHHHHhCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccc
Q psy17306 237 Y----------SNLGNVYKERGQLQEALENYRHAVRLKPD--FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 237 ~----------~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 304 (904)
+ ..+|.++...|++++|+.+|++++..+|. ++.++..+|.++...|++++|+..|+++++..|+++
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-- 247 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-- 247 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--
Confidence 4 44599999999999999999999999999 899999999999999999999999999999988771
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYI 384 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (904)
T Consensus 248 -------------------------------------------------------------------------------- 247 (365)
T 4eqf_A 248 -------------------------------------------------------------------------------- 247 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCC
Q psy17306 385 MGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGP 464 (904)
Q Consensus 385 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 464 (904)
T Consensus 248 -------------------------------------------------------------------------------- 247 (365)
T 4eqf_A 248 -------------------------------------------------------------------------------- 247 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHh
Q psy17306 465 GGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYN 544 (904)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (904)
.++.
T Consensus 248 ----------------------------------------------------------------------------~~~~ 251 (365)
T 4eqf_A 248 ----------------------------------------------------------------------------SLWN 251 (365)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1237
Q ss_pred hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------
Q psy17306 545 VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------- 617 (904)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------- 617 (904)
.+|.++...|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 320 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTR-----------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQV 320 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHH-----------HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCccc
Confidence 778888999999999999999 99999999999999999999999999999999999999877
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 618 -----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 618 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+..+|..++.++..+|+.+.|.....+.++ .+.+.+..+
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~----~~~~~~~~~ 364 (365)
T 4eqf_A 321 PHPAISGNIWAALRIALSLMDQPELFQAANLGDLD----VLLRAFNLD 364 (365)
T ss_dssp ------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG----GGTTTTTCC
T ss_pred chhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH----HHHHhcCCC
Confidence 367899999999999999998885554333 555544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=240.93 Aligned_cols=262 Identities=13% Similarity=0.077 Sum_probs=235.4
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCccc
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 303 (904)
.++..+|+++.++..+|.++...|++++|+..|++++.++|++..+|..+|.++..+|+ +++|+..|+++++++|+++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~- 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-
Confidence 35678899999999999999999999999999999999999999999999999999997 9999999999999999881
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
T Consensus 167 -------------------------------------------------------------------------------- 166 (382)
T 2h6f_A 167 -------------------------------------------------------------------------------- 166 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
T Consensus 167 -------------------------------------------------------------------------------- 166 (382)
T 2h6f_A 167 -------------------------------------------------------------------------------- 166 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.+|
T Consensus 167 -----------------------------------------------------------------------------~a~ 169 (382)
T 2h6f_A 167 -----------------------------------------------------------------------------QVW 169 (382)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 234
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
+.+|.++...|++++|+..|++ ++..+|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~k-----------al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~ 238 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIAD-----------ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHH-----------HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 7788888899999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhcCcCcHHH
Q psy17306 624 NLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG--EIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 624 ~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a 700 (904)
++|.++.. .|..++|+. ...++ .+.+++.++|++..+|+++|.++...| ++++|++.++++ +.+|+++.+
T Consensus 239 ~lg~~l~~l~~~~~eA~~--~~el~----~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~a 311 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVL--EREVQ----YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYL 311 (382)
T ss_dssp HHHHHHHHTTCSCSHHHH--HHHHH----HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHH
T ss_pred HHHHHHHHhcCcchHHHH--HHHHH----HHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHH
Confidence 99999999 555588841 11111 788888999999999999999999998 699999999998 999999999
Q ss_pred HHHHHHHHHHhc--------c-hhHHHHHHHHh-hcccCChhhHHHHHHHHH
Q psy17306 701 YINLGNVLKEAR--------I-FDRANTLFYVS-SYFMITDEDIDVILERCE 742 (904)
Q Consensus 701 ~~~la~~~~~~g--------~-~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~ 742 (904)
+..+|.+|..+| + +++|+++|+++ .+..|........++...
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 999999999985 3 59999999999 888887766666655544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-26 Score=239.67 Aligned_cols=246 Identities=11% Similarity=0.004 Sum_probs=227.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhcCcccHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRK-LDKSAHFSTLAIKQNPLLAEAYSNL 82 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 82 (904)
.|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 367788999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLD 161 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~ 161 (904)
|.++..+|++++|+.+|++++.++|++..+|..+|.++..+|++++|+.+|+++++++|++..+|..+|.++.. .|..+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55557
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
+|+. +.++.. +.+++..+|++..+|+.+|
T Consensus 253 eA~~------------------~~el~~---------------------------------~~~Al~l~P~~~~a~~~l~ 281 (382)
T 2h6f_A 253 RAVL------------------EREVQY---------------------------------TLEMIKLVPHNESAWNYLK 281 (382)
T ss_dssp HHHH------------------HHHHHH---------------------------------HHHHHHHSTTCHHHHHHHH
T ss_pred HHHH------------------HHHHHH---------------------------------HHHHHHHCCCCHHHHHHHH
Confidence 7741 111122 2689999999999999999
Q ss_pred HHHHHhC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HhhCCCc
Q psy17306 242 NVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG---------DMEQAVQAYVTA-LQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~p~~ 301 (904)
.++...| ++++|+..++++ +.+|+++.++..+|.++..+| .+++|+.+|+++ ++.+|..
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 9999988 699999999998 999999999999999999985 359999999999 9999987
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=235.89 Aligned_cols=283 Identities=19% Similarity=0.180 Sum_probs=242.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHH
Q psy17306 144 YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS 223 (904)
Q Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 223 (904)
...++.+|..+...|++++|+..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~-------------------------------------------------------- 44 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAF-------------------------------------------------------- 44 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHH--------------------------------------------------------
Confidence 355678888888888888887777
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCccc
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKK 303 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 303 (904)
++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|....
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 124 (327)
T 3cv0_A 45 EAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 124 (327)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999887711
Q ss_pred ccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHH
Q psy17306 304 EDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIY 383 (904)
Q Consensus 304 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (904)
.+..
T Consensus 125 --~~~~-------------------------------------------------------------------------- 128 (327)
T 3cv0_A 125 --LGSV-------------------------------------------------------------------------- 128 (327)
T ss_dssp --C-----------------------------------------------------------------------------
T ss_pred --HHHH--------------------------------------------------------------------------
Confidence 0000
Q ss_pred HhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccC
Q psy17306 384 IMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSG 463 (904)
Q Consensus 384 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 463 (904)
+ ...
T Consensus 129 -~-------------------------------------------~~~-------------------------------- 132 (327)
T 3cv0_A 129 -N-------------------------------------------LQA-------------------------------- 132 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -H-------------------------------------------hHH--------------------------------
Confidence 0 000
Q ss_pred CCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHH
Q psy17306 464 PGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVY 543 (904)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (904)
.|.. ...
T Consensus 133 --------------------------------------------------------------~~~~-----------~~~ 139 (327)
T 3cv0_A 133 --------------------------------------------------------------DVDI-----------DDL 139 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------HHHH-----------HHH
Confidence 0000 000
Q ss_pred hhC-ch-hHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVE-PD-LTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l-~~-~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+ +. ++...|++++|+..+++ ++...|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 208 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHA-----------ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHH-----------HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHH-----------HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 222 33 46778899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC-----
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN----- 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----- 696 (904)
+..+|.++...|++++|+. .+.++++.+|+++.++..+|.++...|++++|+..|+++++++|.
T Consensus 209 ~~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALD-----------AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 9999999999999999999 666666778888999999999999999999999999999999999
Q ss_pred -------cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 697 -------FLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 697 -------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
++.++..+|.++..+|++++|..++++++...+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999998877654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=214.54 Aligned_cols=200 Identities=28% Similarity=0.329 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 119 ALVAA-----------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 119 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------- 141 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL-------------------- 141 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH--------------------
Confidence 66666 66666666666666666666666666666666666666666666
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++..+ +++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 142 ------------------------------------~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 142 ------------------------------------KQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp ------------------------------------HHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------------------HHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4555555 566677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 268 IDGYINLAAALVAAGDMEQAVQAYVTAL 295 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (904)
+.++..+|.++...|++++|+..|+++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777776653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=228.60 Aligned_cols=239 Identities=16% Similarity=0.129 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
....++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINL--------------AA-ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
...|++++|+..|++++..+|.+...+..+ +. ++...|++++|+..++++++.+|++..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 999999999999999999999998887777 66 688899999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc
Q psy17306 152 NLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231 (904)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (904)
.++...|++++|+..+ .+++..+|
T Consensus 180 ~~~~~~~~~~~A~~~~--------------------------------------------------------~~~~~~~~ 203 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANL--------------------------------------------------------RRAVELRP 203 (327)
T ss_dssp HHHHHTTCHHHHHHHH--------------------------------------------------------HHHHHHCT
T ss_pred HHHHHhccHHHHHHHH--------------------------------------------------------HHHHHhCC
Confidence 9999999999998888 67888899
Q ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|+.
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=210.89 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=178.7
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
|..+.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy17306 85 VYKER-----------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL 153 (904)
Q Consensus 85 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 153 (904)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 154 LKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
+...|++++|+..| ++++..+|++
T Consensus 161 ~~~~g~~~~A~~~~--------------------------------------------------------~~al~~~P~~ 184 (217)
T 2pl2_A 161 YLSMGRLDEALAQY--------------------------------------------------------AKALEQAPKD 184 (217)
T ss_dssp HHHHTCHHHHHHHH--------------------------------------------------------HHHHHHSTTC
T ss_pred HHHcCCHHHHHHHH--------------------------------------------------------HHHHHhCCCC
Confidence 99999999999988 7899999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAV 261 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 261 (904)
+.++..+|.++...|++++|+..|+++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=213.35 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=219.3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------HH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-------AE 77 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 77 (904)
+..+.+++.+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++.+|.+ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3567899999999999999999999999999999 899999999999999999999999999999998876 79
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
++..+|.++...|++++|+..|++++.+.|. +.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 56788889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHH
Q psy17306 158 GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY 237 (904)
Q Consensus 158 ~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (904)
|++++|+..+ ++++..+|.++.++
T Consensus 153 ~~~~~A~~~~--------------------------------------------------------~~a~~~~~~~~~~~ 176 (258)
T 3uq3_A 153 SDWPNAVKAY--------------------------------------------------------TEMIKRAPEDARGY 176 (258)
T ss_dssp TCHHHHHHHH--------------------------------------------------------HHHHHHCTTCHHHH
T ss_pred cCHHHHHHHH--------------------------------------------------------HHHHhcCcccHHHH
Confidence 9999999888 68888899999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-24 Score=234.20 Aligned_cols=360 Identities=17% Similarity=0.095 Sum_probs=247.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH---HHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL---DKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56788899999999999999998765 5678888999999998888 8999999999866 67788999997776
Q ss_pred hC-----cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 89 RG-----QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA---VQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 89 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
.+ ++++|+.+|++++..+ ++.+++.+|.+|...+..+++ ...+.++.. +.++.+++.+|.+|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence 65 8899999999998854 455888999999887765444 444444433 34577888888888888877
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 240 (904)
+++.... ..++ ..+...+|. +++.+
T Consensus 158 ~~~~~~a-------------------~~~~---------------------------------~~a~~~~~~---a~~~L 182 (452)
T 3e4b_A 158 DQHLDDV-------------------ERIC---------------------------------KAALNTTDI---CYVEL 182 (452)
T ss_dssp GGGHHHH-------------------HHHH---------------------------------HHHTTTCTT---HHHHH
T ss_pred ccCHHHH-------------------HHHH---------------------------------HHHHcCCHH---HHHHH
Confidence 6654432 1111 234344443 88888
Q ss_pred HHHHHHhC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCcccccCCCCCccc
Q psy17306 241 GNVYKERG---QLQEALENYRHAVRLKPDFIDGYINLAAALVAA----GDMEQAVQAYVTALQYNPLLKKEDGWNTEPFV 313 (904)
Q Consensus 241 g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 313 (904)
|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |+++
T Consensus 183 g~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~----------- 248 (452)
T 3e4b_A 183 ATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP----------- 248 (452)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-----------
T ss_pred HHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-----------
Confidence 99988888 888999999999988888888888888888665 68888888888876 4441
Q ss_pred ccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCC
Q psy17306 314 LDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNG 393 (904)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 393 (904)
.
T Consensus 249 ------------------------------------------------------------------~------------- 249 (452)
T 3e4b_A 249 ------------------------------------------------------------------A------------- 249 (452)
T ss_dssp ------------------------------------------------------------------H-------------
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred cccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCc
Q psy17306 394 KILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGK 473 (904)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 473 (904)
T Consensus 250 -------------------------------------------------------------------------------- 249 (452)
T 3e4b_A 250 -------------------------------------------------------------------------------- 249 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchh-H--
Q psy17306 474 VVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDL-T-- 550 (904)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-- 550 (904)
+++.+|.+ +
T Consensus 250 --------------------------------------------------------------------a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 250 --------------------------------------------------------------------SWVSLAQLLYDF 261 (452)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHS
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhC
Confidence 11333333 2
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-----QLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
...+++++|+.+|++ +.+. +++.+++++|.+|. .| ++++|+.+|+++. |+++.++++|
T Consensus 262 ~~~~d~~~A~~~~~~-----------Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~L 324 (452)
T 3e4b_A 262 PELGDVEQMMKYLDN-----------GRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYL 324 (452)
T ss_dssp GGGCCHHHHHHHHHH-----------HHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-----------HHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHH
Confidence 246788889988888 6654 46888899998888 45 8999999999988 8888999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCc
Q psy17306 626 AAALVA----AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 626 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~ 697 (904)
|.+|.. ..++++|+.+|+++ .+ +.++.+.++||.+|.. ..++.+|..+|++|.+..+
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~A-----------a~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-- 389 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTA-----------AR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-- 389 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHH-----------HT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHH-----------Hh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--
Confidence 988877 34888899844444 33 3456788899998875 4588999999999888754
Q ss_pred HHHHHHHHHHH
Q psy17306 698 LDAYINLGNVL 708 (904)
Q Consensus 698 ~~a~~~la~~~ 708 (904)
+.+...++.+.
T Consensus 390 ~~a~~~l~~l~ 400 (452)
T 3e4b_A 390 PEANDLATQLE 400 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=218.51 Aligned_cols=238 Identities=15% Similarity=0.115 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc----HHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL----AEAYSNLG 83 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 83 (904)
.+.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999 3333 55699999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999555556688888
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~ 243 (904)
+..+ ++++..+|+++.++..+|.+
T Consensus 162 ~~~~--------------------------------------------------------~~a~~~~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 162 DSSF--------------------------------------------------------VKVLELKPNIYIGYLWRARA 185 (272)
T ss_dssp HHHH--------------------------------------------------------HHHHHHSTTCHHHHHHHHHH
T ss_pred HHHH--------------------------------------------------------HHHHHhCccchHHHHHHHHH
Confidence 8887 68889999999999999999
Q ss_pred HHHhCC---HHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 244 YKERGQ---LQEALENYRHAVRLK---PD-----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 244 ~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
+...|+ +++|+..|+++++.. |+ ...++..+|.++...|++++|+.+|+++++++|+++
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 999999 999999999999885 44 236889999999999999999999999999999983
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=231.47 Aligned_cols=348 Identities=13% Similarity=0.048 Sum_probs=259.2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL---QEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 46 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..+|..++..|++++|+..|+++.+. +++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 55799999999999999999999765 5678899999999999999 9999999999976 67889999997777
Q ss_pred cC-----CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCc
Q psy17306 123 AG-----DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPV 197 (904)
Q Consensus 123 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 197 (904)
.+ ++++|+.+|+++++. +++.+++.+|.+|...+...++...+ ..+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~--------------------~~~------- 132 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQ--------------------QQI------- 132 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHH--------------------HHH-------
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHH--------------------HHH-------
Confidence 66 889999999999984 55669999999998877655443222 111
Q ss_pred chhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHH----HHHHHHHhhCCCCHHHHHH
Q psy17306 198 TMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL----ENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~----~~~~~al~~~p~~~~~~~~ 273 (904)
.++. .+.++.+++.+|.++...+.++++. .+++.+...+| .+++.
T Consensus 133 --------------------------~~a~--~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~ 181 (452)
T 3e4b_A 133 --------------------------SQWQ--AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVE 181 (452)
T ss_dssp --------------------------HHHH--HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHH
T ss_pred --------------------------HHHH--HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHH
Confidence 1222 2334778999999999998555544 44555544444 49999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhh
Q psy17306 274 LAAALVAAG---DMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQE 350 (904)
Q Consensus 274 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (904)
+|.+|...| ++++|+.+|+++.+..+..
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~------------------------------------------------- 212 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVT------------------------------------------------- 212 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-------------------------------------------------
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-------------------------------------------------
Confidence 999999999 9999999999999888766
Q ss_pred hhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhc
Q psy17306 351 KCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAID 430 (904)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 430 (904)
+..+
T Consensus 213 ----------------------------a~~~------------------------------------------------ 216 (452)
T 3e4b_A 213 ----------------------------AQRV------------------------------------------------ 216 (452)
T ss_dssp ----------------------------HHHH------------------------------------------------
T ss_pred ----------------------------HHHH------------------------------------------------
Confidence 1111
Q ss_pred CCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChh
Q psy17306 431 HPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPN 510 (904)
Q Consensus 431 ~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 510 (904)
T Consensus 217 -------------------------------------------------------------------------------- 216 (452)
T 3e4b_A 217 -------------------------------------------------------------------------------- 216 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHh----hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH
Q psy17306 511 KFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTR----EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE 586 (904)
Q Consensus 511 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~ 586 (904)
+.+|.++. ..+++++|+.+|++ +. |+++.
T Consensus 217 ---------------------------------~~Lg~~y~~g~~~~~d~~~A~~~~~~-----------aa---~g~~~ 249 (452)
T 3e4b_A 217 ---------------------------------DSVARVLGDATLGTPDEKTAQALLEK-----------IA---PGYPA 249 (452)
T ss_dssp ---------------------------------HHHHHHHTCGGGSSCCHHHHHHHHHH-----------HG---GGSTH
T ss_pred ---------------------------------HHHHHHHhCCCCCCCCHHHHHHHHHH-----------Hc---CCCHH
Confidence 22222222 23788999999999 76 89999
Q ss_pred HHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 587 AYSNLGNV-Y--KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-----DMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 587 ~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
+++++|.+ + ...+++++|+.+|+++++. +++.+++++|.+|. .| ++++|+. .|.++.
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~-----------~~~~Aa- 314 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEA-----------HFEKAV- 314 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHH-----------HHHTTT-
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH-----------HHHHHh-
Confidence 99999999 4 5789999999999999965 58999999999998 56 9999999 777777
Q ss_pred cCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccC
Q psy17306 659 TRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 729 (904)
|.++.++++||.+|.. ..++++|+.+|+++.+. .++.+.++||.+|.. .++..+|..+|+++.+...
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 8889999999999987 44999999999999884 568899999999985 4689999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-23 Score=210.42 Aligned_cols=170 Identities=16% Similarity=0.210 Sum_probs=153.5
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
++..+|.++...|++++|+..|++ ++..+|. +.++...|++++|+..+++++..+|.++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~-----------a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 141 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQK-----------SLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEE 141 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHH-----------HHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence 457888899999999999999999 8888887 456777888999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
+..+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVK-----------AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999999999 66666677888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccc------CChhhHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFM------ITDEDIDVILERC 741 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~ 741 (904)
..+|.++...|++++|+.+|++++... |++..+...+..|
T Consensus 211 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 211 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999988 7777776666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=207.06 Aligned_cols=152 Identities=11% Similarity=-0.019 Sum_probs=108.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLG--NVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
..+|.++...|++++|+..+++ ++..+|++.......+ .++...|++++|+..|+++++.+|+++.+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~-----------~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~ 202 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKK-----------MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-----------HHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHH
Confidence 4555666667777777777777 6666666543333323 22334477888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhcCcCcHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~a 700 (904)
++++|.++..+|++++|+. .+.++++.+|+++.++.++|.++...|++++ +..+++++++++|+++.+
T Consensus 203 ~~~la~~~~~~g~~~eA~~-----------~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEG-----------VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 8888888888888888888 6666667778888888888888888888765 457778888888888776
Q ss_pred HHHHHHHHHHhcchhHHHHHH
Q psy17306 701 YINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~ 721 (904)
.. +..+.+.+++|..-|
T Consensus 272 ~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 KE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HH----HHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHc
Confidence 53 456666666666655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=225.76 Aligned_cols=132 Identities=25% Similarity=0.309 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++.++|.++...|++++|+..|++++++.|.. ..++.++|.++...|++++|+..+++++++.+. ..
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~ 301 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LN 301 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----cC
Confidence 3466777777777777777777777777765544 668889999999999999999988887764322 12
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------CcCcHHHHHHHHHHHHHhcchhHHHHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL------DPNFLDAYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~ 721 (904)
..+..+.++..+|.++...|++++|+.+|++++++ .+....++..+|.++...|+...+...+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 23445778999999999999999999999999998 3445789999999999999886544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=213.98 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=159.4
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
|..+|.++...|++++|+..|++ ++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~-----------a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 145 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQA-----------AVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHH-----------HHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHH
Confidence 47788899999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcC---cC
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSLD---PN 696 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~---p~ 696 (904)
.++|......+++++|+. .+.++++.+|+++.++..+|.++...|+ +++|+..|++++++. |+
T Consensus 146 ~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 146 YELGQAYYYNKEYVKADS-----------SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 999955555669999999 6667777888889999999999999999 999999999999985 54
Q ss_pred -----cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 697 -----FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 697 -----~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...++..+|.+|...|++++|+++|++++...|++..+...+....
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 3478999999999999999999999999999999887777665554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=208.90 Aligned_cols=110 Identities=7% Similarity=0.006 Sum_probs=86.6
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
..|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|+++++.+|+++.++.++|.++..
T Consensus 178 ~~~~~~eA~~~~~~-----------~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 178 GGEKLQDAYYIFQE-----------MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CTTHHHHHHHHHHH-----------HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45778888888888 8888888888999999999999999999999999999999999999999999988
Q ss_pred cCCHHH-HHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 632 AGDMEQ-AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 632 ~g~~~~-A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
.|++++ +.. .+.++++.+|+++.+.. ...+.+.+++|+.-|
T Consensus 247 ~g~~~eaa~~-----------~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 247 LGKPPEVTNR-----------YLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp TTCCHHHHHH-----------HHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHH-----------HHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 988876 456 55566677777776543 345555666665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=225.65 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++..+|.++...|++++|+..|++++++.+.. ..++..+|.++...|++++|+..+++++++.+ ...
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~ 341 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR-----EVG 341 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----Hhc
Confidence 4567777888888888888888888887764332 56888999999999999999998888886332 223
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWL 682 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~ 682 (904)
..+....++..+|.++...|+...
T Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 342 DKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcchhHHHHHHHHHHHHhhHhHH
Confidence 445667889999999999887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=202.01 Aligned_cols=220 Identities=22% Similarity=0.244 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+.+++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
+ .+++...|.++.++..+|.++..
T Consensus 182 ~--------------------------------------------------------~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 182 F--------------------------------------------------------AAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp H--------------------------------------------------------HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred H--------------------------------------------------------HHHHHhCcccHHHHHHHHHHHHH
Confidence 8 57778888889999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (904)
.|++++|+.+|+++++.+|+++.++..++.+....+
T Consensus 206 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999888887765544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=189.95 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=163.2
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
..+|..+|.++...|++++|+..|++ +++.+|+++.++..+|.++...|++++|+..+.+++...|+++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKK-----------VLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 35789999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
.++..+|.++...++++.|+. .+.+++..+|+++.++..+|.++..+|++++|+..|+++++++|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~-----------~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAID-----------ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR 142 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence 999999999999999999999 777777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
++.++|.+|..+|++++|+++|+++++..|++
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999987643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=230.63 Aligned_cols=168 Identities=33% Similarity=0.508 Sum_probs=161.0
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+|+++|.++..+|++++|+..|++ +++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~k-----------Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~ 78 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRK-----------ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3459999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
+++++|.++..+|++++|++ .|+++++++|+++.+|+++|.+|..+|++++|+..|++|++++|+++.+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~-----------~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQ-----------CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999 7777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+.++|.++..+|++++|.+.|+++++..++
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999876543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=216.01 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC
Q psy17306 230 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 230 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 283 (904)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 4566788999999999999999999999999988 45567799999999999998
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=212.91 Aligned_cols=270 Identities=20% Similarity=0.227 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhc------Ccc
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPL 74 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 74 (904)
+..+..++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 46678889999999999999999999999999999986 58999999999999999999999999987 677
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGD-----------------MEQAVQ 131 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 131 (904)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 8899999999999999999999999999998 55667799999999999999 999999
Q ss_pred HHHHHHhcC------CChhhHHHHHHHHHHHcCChHHHHHHHH-----------------HHHhhHHHHHHcCCHHHHHH
Q psy17306 132 AYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYC-----------------VRSDLGNLLKALGRLDEAKN 188 (904)
Q Consensus 132 ~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~-----------------~~~~l~~~~~~~g~~~~A~~ 188 (904)
.+++++++. +....++..+|.++...|++++|+..+. .+..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998863 2335688999999999999999999882 56678889999999999999
Q ss_pred HHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--
Q psy17306 189 LHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-- 266 (904)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 266 (904)
.+++++... ......+....++..+|.++...|++++|+.+|++++...+.
T Consensus 285 ~~~~al~~~---------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 285 HYKRTLALA---------------------------VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHH---------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---------------------------HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 887432210 001111234788999999999999999999999999987533
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 267 ----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 267 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
...++..+|.++...|++++|+.+|++++++.+..
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 24589999999999999999999999999998876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=216.04 Aligned_cols=213 Identities=19% Similarity=0.154 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL-DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|+.+|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777888888888999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc--------CChHHHHH
Q psy17306 103 VRLKPDFIDGYINLAAALVAA---------GDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL--------GRLDEAKD 165 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~ 165 (904)
++++|+ ..++..+|.++... |++++|+..|+++++++|++..++..+|.++... |++++|+.
T Consensus 164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999 79999999999999 9999999999999999999999999999999988 77888877
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc---hhHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP---LLAEAYSNLGN 242 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~lg~ 242 (904)
.| ++++..+| .++.+++.+|.
T Consensus 243 ~~--------------------------------------------------------~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 243 AY--------------------------------------------------------AQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp HH--------------------------------------------------------HHHHHHCGGGGGCHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHHHhCCCcccCHHHHHHHHH
Confidence 77 68888899 99999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293 (904)
Q Consensus 243 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (904)
++...|++++|+..|+++++++|+++.++..++.++...|++++|+..+.+
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-21 Score=202.09 Aligned_cols=108 Identities=26% Similarity=0.347 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..++..+|.++...|++++|+..|++++++.|.. ..++..+|.++...|++++|+..++++++..+. ..
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~ 297 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LK 297 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cC
Confidence 3467777778888888888888888877765443 567888888888888888888877777764332 12
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
..+....++..+|.++...|++++|+.+|++++++.+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 233446688888999999999999999999998887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-19 Score=205.73 Aligned_cols=382 Identities=16% Similarity=0.173 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
++-.......|...|.+.+|++.+++++ +.|. +......++.+..+. +..+...+..+.-..+ ...+|
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHH
Confidence 3344555666667788888888888777 4443 233333344444443 3333333333322111 22367
Q ss_pred HHHHHcCChHHHHHHHHHHHh----hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHh
Q psy17306 152 NLLKALGRLDEAKDLYCVRSD----LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAI 227 (904)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 227 (904)
.++...|.+++|..+|+.... +...+...+++++|++.+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aer----------------------------------- 1101 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAER----------------------------------- 1101 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHh-----------------------------------
Confidence 777777777777777743211 12233355666666665541
Q ss_pred hcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCC
Q psy17306 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGW 307 (904)
Q Consensus 228 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 307 (904)
.+.+.+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++..
T Consensus 1102 ---vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~----- 1168 (1630)
T 1xi4_A 1102 ---CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----- 1168 (1630)
T ss_pred ---cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-----
Confidence 245899999999999999999999999886 7899999999999999999999999999998876540
Q ss_pred CCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhc
Q psy17306 308 NTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQ 387 (904)
Q Consensus 308 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 387 (904)
+...++.+|..+++
T Consensus 1169 ------------------------------------------------------------------Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1169 ------------------------------------------------------------------VETELIFALAKTNR 1182 (1630)
T ss_pred ------------------------------------------------------------------ccHHHHHHHHhhcC
Confidence 11112222222211
Q ss_pred ccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCc
Q psy17306 388 LVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGK 467 (904)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 467 (904)
T Consensus 1183 -------------------------------------------------------------------------------- 1182 (1630)
T 1xi4_A 1183 -------------------------------------------------------------------------------- 1182 (1630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCc
Q psy17306 468 TVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEP 547 (904)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 547 (904)
.+....++ ..++. . .+..+|
T Consensus 1183 -----------------------------------------leele~fI--------~~~n~-a----------d~~~iG 1202 (1630)
T 1xi4_A 1183 -----------------------------------------LAELEEFI--------NGPNN-A----------HIQQVG 1202 (1630)
T ss_pred -----------------------------------------HHHHHHHH--------hCCCH-H----------HHHHHH
Confidence 11111110 01111 1 235688
Q ss_pred hhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy17306 548 DLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627 (904)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 627 (904)
..+...|+|++|..+|.+ + ..|..+|.++..+|++++|++.++++ .+..+|...+.
T Consensus 1203 d~le~eg~YeeA~~~Y~k-----------A--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNN-----------V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCF 1258 (1630)
T ss_pred HHHHhcCCHHHHHHHHHh-----------h--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 999999999999999988 3 47889999999999999999999988 45688999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 628 ALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 628 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
++...|++..|.. +... +..+| +.+..++..|...|.+++|+.+++++|.++|.+...+..+|.+
T Consensus 1259 acve~~Ef~LA~~-----------cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiL 1323 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQM-----------CGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 1323 (1630)
T ss_pred HHhhhhHHHHHHH-----------HHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHH
Confidence 9999999999988 3332 33333 3455888889999999999999999999999999999888888
Q ss_pred HHH--hcchhHHHHHHHHhhcccC-----ChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 708 LKE--ARIFDRANTLFYVSSYFMI-----TDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 708 ~~~--~g~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
|.+ .++..++++.|.+...+.+ .+..+...+--.+.+.+++++|+..+...
T Consensus 1324 yaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 754 5688888888887777554 23333444444455566777777554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-19 Score=204.35 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=118.3
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...+.+....|+|..|..+... +..+ ++.+..++..|...|.+++|+..+++++.++|.+...+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~------------Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH------------IVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh------------hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 5566666777777777765543 2223 455668899999999999999999999999999999998
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhhChhhHHHhhhcCc-----chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---
Q psy17306 624 NLAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRP-----DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--- 693 (904)
Q Consensus 624 ~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--- 693 (904)
.+|.+|.+- ++..++++.|. ..+.+.| +++..|..+..+|.+-|+++.|+...-.....
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~-----------~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFW-----------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH-----------HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 999888765 46667777444 4444444 66789999999999999999999544444333
Q ss_pred ---------CcCcHHHHHHHHHHHHHhc---------------chhHHHHHHHHhh
Q psy17306 694 ---------DPNFLDAYINLGNVLKEAR---------------IFDRANTLFYVSS 725 (904)
Q Consensus 694 ---------~p~~~~a~~~la~~~~~~g---------------~~~~A~~~~~~a~ 725 (904)
.+.+++.++.....|...+ +++.++..|+++-
T Consensus 1388 ~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1388 EGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 6788999999999999666 6666666665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=189.74 Aligned_cols=204 Identities=16% Similarity=0.093 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+.+++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcch
Q psy17306 122 AAGDMEQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTM 199 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 199 (904)
..|++++|+..+++++. ..|.+..++..+|.++...|++++|+..+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------------------------------- 164 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF-------------------------------- 164 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 55555555555555555 44555555555555555555555555555
Q ss_pred hhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 200 KVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
.+++...|.++.++..+|.++...|++++|+..++++++..|.+..++..++.++.
T Consensus 165 ------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 165 ------------------------EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK 220 (252)
T ss_dssp ------------------------HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred ------------------------HHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 280 AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..|++++|..+++++++..|++
T Consensus 221 ~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTS
T ss_pred HccCHHHHHHHHHHHHHHCCCC
Confidence 5555555555555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=182.99 Aligned_cols=171 Identities=22% Similarity=0.378 Sum_probs=117.4
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH
Q psy17306 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA 234 (904)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 234 (904)
...++++.|...+ .+++..+|.+.
T Consensus 84 ~~~~~~~~a~~~~--------------------------------------------------------~~a~~~~~~~~ 107 (184)
T 3vtx_A 84 FMIDEKQAAIDAL--------------------------------------------------------QRAIALNTVYA 107 (184)
T ss_dssp HHTTCHHHHHHHH--------------------------------------------------------HHHHHHCTTCH
T ss_pred HHcCCHHHHHHHH--------------------------------------------------------HHHHHhCccch
Confidence 6666666666555 45566666666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 235 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 6777777777777777777777777777777777777777777777777777777777777777665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-21 Score=202.84 Aligned_cols=268 Identities=20% Similarity=0.231 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc------CcccH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNN----TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ------NPLLA 76 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 76 (904)
....++..|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.++++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 35678999999999999999999999999999998 468889999999999999999999999887 55568
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q psy17306 77 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGD--------------------MEQAV 130 (904)
Q Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 130 (904)
.++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 899999999999999999999999999885543 3489999999999999 99999
Q ss_pred HHHHHHHhc------CCChhhHHHHHHHHHHHcCChHHHHHHHH-----------------HHHhhHHHHHHcCCHHHHH
Q psy17306 131 QAYVTALQY------NPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------------VRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 131 ~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~-----------------~~~~l~~~~~~~g~~~~A~ 187 (904)
..+++++.+ .+....++..+|.++...|++++|+..+. .+..+|.++...|++++|+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999876 23345688999999999999999999882 5667788999999999999
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
..+.+++... ......+....++..+|.++...|++++|+.++++++...+..
T Consensus 244 ~~~~~al~~~---------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 244 EYYKKTLLLA---------------------------RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHH---------------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------------------HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 9987432210 0011122337788999999999999999999999999875432
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 268 ------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 268 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
..++..+|.++...|++++|..++++++++.+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 4588999999999999999999999999987754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=184.16 Aligned_cols=214 Identities=18% Similarity=0.091 Sum_probs=153.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
.|..+..++.+|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHh-CcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCCh
Q psy17306 84 NVYKER-GQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 84 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 160 (904)
.++... |++++|+..|++++. ..|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 777777 777777777777777 45555667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc-hhHHHHHH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP-LLAEAYSN 239 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 239 (904)
++|...+ ++++...| .+...+..
T Consensus 164 ~~A~~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~ 187 (225)
T 2vq2_A 164 GDADYYF--------------------------------------------------------KKYQSRVEVLQADDLLL 187 (225)
T ss_dssp HHHHHHH--------------------------------------------------------HHHHHHHCSCCHHHHHH
T ss_pred HHHHHHH--------------------------------------------------------HHHHHhCCCCCHHHHHH
Confidence 6666666 45555566 66666666
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy17306 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 273 (904)
Q Consensus 240 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 273 (904)
++.++...|++++|..+++.+...+|+++.+...
T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 188 GWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6667777777777777777776677776665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=190.50 Aligned_cols=212 Identities=16% Similarity=0.082 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+.+++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHH
Q psy17306 87 KERGQLQEALENYRHAVR--LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 164 (904)
...|++++|+..|++++. ..|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999 888899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHH
Q psy17306 165 DLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244 (904)
Q Consensus 165 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~ 244 (904)
..+ ++++...|.+...+..++.++
T Consensus 196 ~~~--------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 196 QYY--------------------------------------------------------DLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHH--------------------------------------------------------HHHHTTSCCCHHHHHHHHHHH
T ss_pred HHH--------------------------------------------------------HHHHHhCcCcHHHHHHHHHHH
Confidence 888 688889999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 245 KERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 245 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
...|++++|..+++++++..|+++.+...+
T Consensus 220 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999998876543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-20 Score=188.97 Aligned_cols=229 Identities=24% Similarity=0.301 Sum_probs=208.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCcccHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ----CRKLDKSAHFSTLAIKQNPLLAEAYS 80 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 80 (904)
|..+.+++.+|..+...|++++|+..|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 45678899999999999999999999999998 7889999999999999 999999999999999985 789999
Q ss_pred HHHHHHHH----hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy17306 81 NLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152 (904)
Q Consensus 81 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 152 (904)
.+|.++.. .+++++|+.+|++++..+ ++.++..+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 99999999 999999999999999884 78999999999999 999999999999999976 5778889999
Q ss_pred HHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhh
Q psy17306 153 LLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228 (904)
Q Consensus 153 ~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 228 (904)
++.. .+++++|+..+ ++++.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~--------------------------------------------------------~~a~~ 178 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASY--------------------------------------------------------DKACD 178 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHH--------------------------------------------------------HHHHH
T ss_pred HHHcCCCCCCCHHHHHHHH--------------------------------------------------------HHHHH
Confidence 9988 88888888877 45555
Q ss_pred cCchhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Q psy17306 229 QNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 229 ~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 300 (904)
.. ++.++..+|.++.. .+++++|+.+|+++++.+| +.++..+|.++.. .+++++|+.+|+++++..|+
T Consensus 179 ~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 179 LK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 43 47889999999999 9999999999999999865 8899999999999 99999999999999999987
Q ss_pred c
Q psy17306 301 L 301 (904)
Q Consensus 301 ~ 301 (904)
.
T Consensus 255 ~ 255 (273)
T 1ouv_A 255 G 255 (273)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=192.70 Aligned_cols=205 Identities=21% Similarity=0.191 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchh
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMK 200 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 200 (904)
...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~--------------------------------- 148 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL--------------------------------- 148 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH---------------------------------
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 201 VQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
.+++...|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus 149 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 149 -----------------------QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp -----------------------HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q psy17306 281 AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 281 ~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|++++|+..++++++..|++
T Consensus 206 ~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 206 KENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp TTCTTHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHccCcch
Confidence 999999999999999999998
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=184.12 Aligned_cols=210 Identities=16% Similarity=0.138 Sum_probs=199.9
Q ss_pred hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 116 (904)
..|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhc
Q psy17306 117 AAALVAA-GDMEQAVQAYVTALQ--YNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTEN 193 (904)
Q Consensus 117 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 193 (904)
|.++... |++++|+..++++++ .+|.+..++..+|.++...|++++|+..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-------------------------- 136 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL-------------------------- 136 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH--------------------------
Confidence 9999999 999999999999999 67777899999999999999999998888
Q ss_pred CCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC-CCHHHHH
Q psy17306 194 IKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP-DFIDGYI 272 (904)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 272 (904)
.+++...|.++.++..+|.++...|++++|+..+++++...| .+..++.
T Consensus 137 ------------------------------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 137 ------------------------------KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp ------------------------------HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred ------------------------------HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 678888999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 273 NLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
.++.++...|++++|..+++.+.+..|+++
T Consensus 187 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 187 LGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999883
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-21 Score=195.85 Aligned_cols=240 Identities=16% Similarity=0.075 Sum_probs=196.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQE----TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
+..+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334456789999999999999873 4567899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (904)
++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|++......++.. ...|++++|+..+...
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988666555543 5668888888887211
Q ss_pred ----------HhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc----hhHHH
Q psy17306 171 ----------SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP----LLAEA 236 (904)
Q Consensus 171 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ 236 (904)
..++..+...++.++|+..+. +++...| .++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------------------------------~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLK---------------------------------ADATDNTSLAEHLSET 217 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHH---------------------------------HHCCSHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHH---------------------------------HHhcccccccccccHH
Confidence 123444444455555555554 4444444 44789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (904)
+..+|.++...|++++|+..|++++..+|++... .+.++...|++++|+..+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999977554 377888999999999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=186.49 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred hhCchhHhh----cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q psy17306 544 NVEPDLTRE----GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLK 615 (904)
Q Consensus 544 ~~l~~~~~~----~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 615 (904)
..+|.++.. .+++++|+..|++ ++..+ ++.+++++|.+|.. .+++++|+.+|+++++.+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~-----------a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSK-----------ACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHH-----------HHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHH-----------HHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence 556666666 8999999999999 77764 78999999999999 999999999999999986
Q ss_pred CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHH
Q psy17306 616 PDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHF 687 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~ 687 (904)
++.+++++|.++.. .+++++|+..|++++ +. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-----------~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-----------DL--KDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-----------HT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----------HC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 57899999999999 999999999665554 33 346889999999999 99999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccCC
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++++.+| +.+++++|.+|.. .|++++|+++|+++.+..++
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999976 8899999999999 99999999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-20 Score=182.11 Aligned_cols=209 Identities=18% Similarity=0.155 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQET-NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
+..++.+|..++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 47899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHHc
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFI-------DGYINLAAALVAAGDMEQAVQAYVTALQYNPD--LYCVRSDLGNLLKAL 157 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 157 (904)
..+|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++++|+ ++.++..+|.++...
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999998 67999999999999999999999999999999 899999999999776
Q ss_pred CChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHH
Q psy17306 158 GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY 237 (904)
Q Consensus 158 ~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (904)
|+. .+ .++....+.....
T Consensus 167 ~~~-----~~--------------------------------------------------------~~a~~~~~~~~~~- 184 (228)
T 4i17_A 167 GAD-----VL--------------------------------------------------------RKATPLASSNKEK- 184 (228)
T ss_dssp HHH-----HH--------------------------------------------------------HHHGGGTTTCHHH-
T ss_pred HHH-----HH--------------------------------------------------------HHHHhcccCCHHH-
Confidence 543 11 1222333322222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 238 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
..+......+.+++|+.+|+++++++|+++.+...++.+..
T Consensus 185 -~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 185 -YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 23334455678999999999999999999999988887754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=189.98 Aligned_cols=237 Identities=15% Similarity=0.115 Sum_probs=199.6
Q ss_pred HHHhhc----CchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 224 TLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 224 ~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
.+++.. +|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 29 EQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc
Confidence 466655 4678899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHH
Q psy17306 300 LLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMT 379 (904)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (904)
+++
T Consensus 109 ~~~----------------------------------------------------------------------------- 111 (275)
T 1xnf_A 109 TYN----------------------------------------------------------------------------- 111 (275)
T ss_dssp TCT-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 761
Q ss_pred HHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccc
Q psy17306 380 DLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEG 459 (904)
Q Consensus 380 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~ 459 (904)
T Consensus 112 -------------------------------------------------------------------------------- 111 (275)
T 1xnf_A 112 -------------------------------------------------------------------------------- 111 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHH
Q psy17306 460 AFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARAT 539 (904)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (904)
T Consensus 112 -------------------------------------------------------------------------------- 111 (275)
T 1xnf_A 112 -------------------------------------------------------------------------------- 111 (275)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 619 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (904)
.++..+|.++...|++++|+..|++ ++..+|++......++.+ ...|++++|+..|++++...|.+.
T Consensus 112 -~~~~~la~~~~~~g~~~~A~~~~~~-----------a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~ 178 (275)
T 1xnf_A 112 -YAHLNRGIALYYGGRDKLAQDDLLA-----------FYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQ 178 (275)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred -HHHHHHHHHHHHhccHHHHHHHHHH-----------HHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcch
Confidence 1236778888899999999999999 999999988777666655 566999999999999999999876
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+. ++.++...++.++|+..+.++++..|. ..|.++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 179 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 179 WGWN-IVEFYLGNISEQTLMERLKADATDNTS-------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHhccccc-------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 6654 788888889999999966666654332 23455789999999999999999999999999999998754
Q ss_pred HHHHHHHHHHHhcchhHHHHHH
Q psy17306 700 AYINLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~ 721 (904)
. .+.++...|++++|++.|
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 478899999999999987
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=186.36 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=165.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
.+..+|.++...|++++|+..|++ ++..+| .+..+++++|.++...|++++|+..|+++++.+|+++.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~-----------al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSE-----------YLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH-----------HHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH
Confidence 348999999999999999999999 999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA-------VAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
++..+|.++..+|++++|+. .+.++++.+|+++ .++..+|.++...|++++|+..|++++++
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIA-----------TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcccHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999999 5555666667766 67999999999999999999999999999
Q ss_pred CcC--cHHHHHHHHHHHHHhcch---------------------------hHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 694 DPN--FLDAYINLGNVLKEARIF---------------------------DRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 694 ~p~--~~~a~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
+|+ ++.++.++|.+|...|+. ++|+.+|+++++..|++.++...++.+.
T Consensus 147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999 999999999999999998 9999999999999998888877776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=187.03 Aligned_cols=221 Identities=10% Similarity=-0.024 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-------hcCH-------HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHh
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQ-------CRKL-------DKSAHFSTLAIK-QNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 89 (904)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 4886 999999999999 7999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDLY 167 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~ 167 (904)
|++++|...|+++++++|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|..+|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999987 999999999999999999999999999999888877766655433 57777777776
Q ss_pred HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh
Q psy17306 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER 247 (904)
Q Consensus 168 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 247 (904)
++++..+|+++.++..+|.++...
T Consensus 193 --------------------------------------------------------~~al~~~p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 193 --------------------------------------------------------ELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp --------------------------------------------------------HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --------------------------------------------------------HHHHHhCCCcHHHHHHHHHHHHHC
Confidence 588888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 248 GQLQEALENYRHAVRL---KP-DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 248 g~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
|++++|+..|++++.. .| ....+|..++..+...|+++.|...++++++..|++
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999996 55 478899999999999999999999999999999987
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=207.19 Aligned_cols=216 Identities=16% Similarity=0.130 Sum_probs=199.2
Q ss_pred HHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCCh-hHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH
Q psy17306 512 FKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSI-PITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN 590 (904)
Q Consensus 512 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~ 590 (904)
...++..+.......|.++..+ ..+|.++...|++ ++|+..|++ +++.+|+++.+|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~----------~~lg~~~~~~g~~~~~A~~~~~~-----------al~~~p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQAL----------MLKGKALNVTPDYSPEAEVLLSK-----------AVKLEPELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHH----------HHHHHHHTSSSSCCHHHHHHHHH-----------HHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHH----------HHHHHHHHhccccHHHHHHHHHH-----------HHhhCCCCHHHHHH
Confidence 4445555556666777777666 9999999999999 999999999 99999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 591 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA---------GDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
+|.+|...|++++|+.+|+++++++|+ ..++.++|.++... |++++|+. .+.++++.+|
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-----------~~~~al~~~p 210 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-----------QAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-----------HHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH-----------HHHHHHHhCC
Confidence 999999999999999999999999999 79999999999999 99999999 7777778889
Q ss_pred chHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 662 DFAVAWSNLGCVFNAQ--------GEIWLAIHHFEKAVSLDP---NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++.+|+++|.+|... |++++|+.+|+++++++| .++.+++++|.+|..+|++++|+..|++++...|+
T Consensus 211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999 999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy17306 731 DEDIDVILERCEAKTEELNKKFEQLGESSL 760 (904)
Q Consensus 731 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 760 (904)
+......++.+...++++.++++.++....
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999987766543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=198.24 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=143.8
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LK- 615 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~- 615 (904)
++..+|.++...|++++|+..|+++++... .....+..+.++.++|.+|...|++++|+.+|+++++ .+
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAE-----AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 458889999999999999999999333211 0011223456899999999999999999999999999 46
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHh
Q psy17306 616 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVS 692 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~ 692 (904)
|..+.++.++|.++..+|++++|+..+++++++.+. ..+|.....+..+|.++...|+ +++|+..++++ .
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~ 333 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M 333 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c
Confidence 888899999999999999999999988888874322 1245455557889999999999 88999999887 5
Q ss_pred cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 693 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
..|....++..+|.+|..+|++++|..+|++++...
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 566678899999999999999999999999998754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=193.13 Aligned_cols=243 Identities=11% Similarity=0.064 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHH--HHH--HHHHHhhcCHHHHH-----------HHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVL--LLL--SSIHFQCRKLDKSA-----------HFSTLA 68 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a 68 (904)
.....+.....+...+++++|..+++++.+.-+ .+...+ +.+ .+.....++++.+. ..++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 345677888889999999999999999865432 344443 222 22333445555555 666654
Q ss_pred HhcCcccH------HHHHHHHHHHHHhCcHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 69 IKQNPLLA------EAYSNLGNVYKERGQLQEALENYRHAVRL---KPD---FIDGYINLAAALVAAGDMEQAVQAYVTA 136 (904)
Q Consensus 69 l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 136 (904)
-. .|... ..++.+|.++...|++++|+..|++++.+ .++ .+.++..+|.++...|++++|+..++++
T Consensus 91 ~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 23222 24556999999999999999999999987 233 4678999999999999999999999999
Q ss_pred HhcCCCh-------hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 137 LQYNPDL-------YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 137 l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
+++.+.. ..++..+|.++...|++++|+..+ .+|+.+.++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~----------------~~al~~~~~----------------- 216 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHF----------------QKAYSMAEA----------------- 216 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHH-----------------
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHH----------------HHHHHHHHH-----------------
Confidence 9884432 457788888888888888888887 444444431
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHcCC
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LK-PDFIDGYINLAAALVAAGD 283 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~ 283 (904)
....+..+.++.++|.++...|++++|+.+|++++. .+ |..+.++..+|.++..+|+
T Consensus 217 -----------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 217 -----------------EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC
T ss_pred -----------------cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC
Confidence 122334467899999999999999999999999999 45 7778899999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy17306 284 MEQAVQAYVTALQYNPL 300 (904)
Q Consensus 284 ~~~A~~~~~~al~~~p~ 300 (904)
+++|+.+++++++..+.
T Consensus 280 ~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999986553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=195.37 Aligned_cols=257 Identities=22% Similarity=0.236 Sum_probs=195.4
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-- 71 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 71 (904)
++.|..+.+++.+|..++..|++++|+..++++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999984 6667889999999999999999999999999987
Q ss_pred ------CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 72 ------NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 72 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
+|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47778899999999999999999999999999874 5567789999999999999999999999999
Q ss_pred hc--------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcC-CCcchhhHHHHHHh
Q psy17306 138 QY--------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENI-KPVTMKVQNAIVCN 208 (904)
Q Consensus 138 ~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~ 208 (904)
.. +|....++..+|.++...|++++|+..+ ++++....... ...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----------------~~al~~~~~~~~~~~----------- 233 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY----------------KEILTRAHEREFGSV----------- 233 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH----------------HHHHHHHHHHHHC-------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHhcCCCC-----------
Confidence 98 6777788999999999999999999988 33333322100 000
Q ss_pred hcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy17306 209 YGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 288 (904)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (904)
.............+...+..+...+.+.+|+..+.++...+|..+.++..+|.++...|++++|+
T Consensus 234 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 234 ---------------DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp -------------------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence 00000000123444555556666777777888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCC
Q psy17306 289 QAYVTALQYNPL 300 (904)
Q Consensus 289 ~~~~~al~~~p~ 300 (904)
.+|++++++.|.
T Consensus 299 ~~~~~al~l~~~ 310 (311)
T 3nf1_A 299 TLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhc
Confidence 888888887664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-20 Score=209.90 Aligned_cols=175 Identities=34% Similarity=0.521 Sum_probs=140.4
Q ss_pred cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 71 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
..|+++.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
|.++...|++++|+..| +++++.+
T Consensus 84 g~~l~~~g~~~~A~~~~--------------------------------------------------------~kAl~l~ 107 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCY--------------------------------------------------------TRAIQIN 107 (723)
T ss_dssp HHHHHHTTCHHHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred HHHHHHcCCHHHHHHHH--------------------------------------------------------HHHHHhC
Confidence 77777777777777776 5777777
Q ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
|+++.++.++|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 77888888888888888888888888888888888888888888888888888888888888888877655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=179.22 Aligned_cols=170 Identities=8% Similarity=-0.046 Sum_probs=152.6
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE-AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
|..+|.++...|++++|...|++ ++..+|.++. +|..+|.++...|++++|+..|+++++..|.+..+
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNR-----------LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-----------HHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 36677788889999999999999 9999999886 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CcC-
Q psy17306 622 YINLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---DPN- 696 (904)
Q Consensus 622 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~- 696 (904)
+...+.+... .|++++|+. .|.++++.+|+++.+|..+|.++...|++++|+..|++++.. +|+
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFK-----------IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 8877776544 799999999 666667778889999999999999999999999999999995 664
Q ss_pred cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhH
Q psy17306 697 FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDI 734 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 734 (904)
...+|..++..+...|+.++|..++++++...|++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 78899999999999999999999999999999875433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=190.69 Aligned_cols=332 Identities=17% Similarity=0.179 Sum_probs=161.4
Q ss_pred HHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 52 HFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131 (904)
Q Consensus 52 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 131 (904)
....|+.++|.+++++. +.+.+|..+|.++...|++++|+..|.++ .++..+...+.++...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567778888888776 22457888888888888888888888663 345577777788888888888888
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcC
Q psy17306 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGG 211 (904)
Q Consensus 132 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (904)
+++.+.+..++ +.+...++.+|.+.|++.++..++
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~-------------------------------------------- 117 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFI-------------------------------------------- 117 (449)
T ss_dssp ---------------------------CHHHHTTTT--------------------------------------------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHH--------------------------------------------
Confidence 88777775333 566677777777777777765544
Q ss_pred CCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 212 RKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291 (904)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (904)
+ .|+ ..++..+|..+...|+|++|..+|.++ ..|..+|.++.++|++++|++.+
T Consensus 118 -------------~----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 118 -------------N----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp -------------T----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred -------------c----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHH
Confidence 0 132 347888888888888888888888875 35778888888888888888888
Q ss_pred HHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCC
Q psy17306 292 VTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFG 371 (904)
Q Consensus 292 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (904)
+++. +|.
T Consensus 172 ~KA~--~~~----------------------------------------------------------------------- 178 (449)
T 1b89_A 172 RKAN--STR----------------------------------------------------------------------- 178 (449)
T ss_dssp HHHT--CHH-----------------------------------------------------------------------
T ss_pred HHcC--Cch-----------------------------------------------------------------------
Confidence 8771 110
Q ss_pred cchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCc
Q psy17306 372 GSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPS 451 (904)
Q Consensus 372 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~ 451 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (449)
T 1b89_A 179 -------------------------------------------------------------------------------- 178 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcc
Q psy17306 452 LSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPN 531 (904)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 531 (904)
T Consensus 179 -------------------------------------------------------------------------------- 178 (449)
T 1b89_A 179 -------------------------------------------------------------------------------- 178 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy17306 532 YVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA 611 (904)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (904)
+|...+.++...|+++.|..+... +..+|+. ...+..+|.+.|++++|+..++++
T Consensus 179 ----------~Wk~v~~aCv~~~ef~lA~~~~l~------------L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 179 ----------TWKEVCFACVDGKEFRLAQMCGLH------------IVVHADE---LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHTTTT------------TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHcCcHHHHHHHHHH------------HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 113333445556677777544433 2245544 335888899999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhChhhHHHhhhcCc-----chHHHHHHHHHHHHhCCCHHHHH
Q psy17306 612 VRLKPDFIDGYINLAAALVAA--GDMEQAVQAYVTALQYNPSCYLKAIETRP-----DFAVAWSNLGCVFNAQGEIWLAI 684 (904)
Q Consensus 612 l~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p-----~~~~a~~~lg~~~~~~g~~~~A~ 684 (904)
+.+++.+..++..+|.+|.+- ++..+.++ .|...+.+.| +++..|..+..+|...++++.|+
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~-----------~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLE-----------LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH-----------HHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 999999999999999988765 35566666 5555556666 67788999999999999999999
Q ss_pred HHHHHHHhc------------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 685 HHFEKAVSL------------DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 685 ~~~~~al~~------------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
...-..... .+.+.++++.....|. +....++..+..++....++..+-
T Consensus 303 ~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 303 ITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp HHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHHHHH
T ss_pred HHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcHHHH
Confidence 987776555 6778999999888887 777777888888886666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-20 Score=168.43 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=131.4
Q ss_pred hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy17306 545 VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624 (904)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 624 (904)
.+|.++...|++++|+..+++ ++..+|+++.+++.+|.+|...|++++|++.|+++++++|+++.+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~-----------a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQG-----------STPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHH-----------HSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHH-----------hcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 468888899999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHH-HHHHHhcCcCcHHHHHH
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH-FEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~ 703 (904)
+|.++..+|++++|+. .|.++++++|+++.+++++|.++...|++++|... +++|++++|+++.++..
T Consensus 71 lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 71 LGLLYELEENTDKAVE-----------CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHcCchHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 9999999999999999 77777788899999999999999999999887765 59999999999999999
Q ss_pred HHHHHHHhcc
Q psy17306 704 LGNVLKEARI 713 (904)
Q Consensus 704 la~~~~~~g~ 713 (904)
++.++..+|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999888775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=176.22 Aligned_cols=213 Identities=13% Similarity=0.102 Sum_probs=164.1
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC---
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF--- 109 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 109 (904)
...|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|++++...|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567788888888888888888888888888888888877 7888888888888888888888888888887744
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcC
Q psy17306 110 IDGYINLAAALVA--------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181 (904)
Q Consensus 110 ~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g 181 (904)
+.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....+... ..+..+|.++...|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~------~~~~~la~~~~~~g 162 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA------RKQYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcc
Confidence 5678888888888 888888888888888888887666544433332222221 22455667777777
Q ss_pred CHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCch---hHHHHHHHHHHHHHh----------C
Q psy17306 182 RLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL---LAEAYSNLGNVYKER----------G 248 (904)
Q Consensus 182 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~lg~~~~~~----------g 248 (904)
++++|+..++ +++...|+ .+.+++.+|.++... |
T Consensus 163 ~~~~A~~~~~---------------------------------~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 163 LYEAAAVTYE---------------------------------AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp CHHHHHHHHH---------------------------------HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred CHHHHHHHHH---------------------------------HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 7777777775 77777776 678999999999977 9
Q ss_pred CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHH
Q psy17306 249 QLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A 287 (904)
++++|+..|+++++..|+++ .+...++.++...++++++
T Consensus 210 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 210 RYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999985 4566677777776666544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=183.38 Aligned_cols=182 Identities=22% Similarity=0.278 Sum_probs=147.7
Q ss_pred CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q psy17306 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY---- 139 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 139 (904)
+|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..+++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888888888874 5556778888888888888888888888888876
Q ss_pred ----CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcc
Q psy17306 140 ----NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPT 215 (904)
Q Consensus 140 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (904)
.|....++..+|.++...|++++|+..+ .+++.....
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~a~~~~~~----------------------- 143 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC----------------KRALEIREK----------------------- 143 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH----------------HHHHHHHHH-----------------------
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHH----------------HHHHHHHHH-----------------------
Confidence 3555678888999999999998888888 334433321
Q ss_pred hHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHH
Q psy17306 216 TLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQA 287 (904)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A 287 (904)
......|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|
T Consensus 144 ---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 144 ---------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp ---------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ---------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 011335777889999999999999999999999999998 666778999999999999999999
Q ss_pred HHHHHHHHhhCCCc
Q psy17306 288 VQAYVTALQYNPLL 301 (904)
Q Consensus 288 ~~~~~~al~~~p~~ 301 (904)
+..++++++..|..
T Consensus 215 ~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 215 ETLYKEILTRAHER 228 (311)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=168.60 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=150.1
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHH----------------HHHHHHHcCCHHHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSN----------------LGNVYKERGQLQEALE 606 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~ 606 (904)
+...|..+...|++++|+..|++ ++..+|+++.+++. +|.++...|++++|+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQ-----------TIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-----------HHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 47788899999999999999999 99999999999999 9999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC--HHHHH
Q psy17306 607 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE--IWLAI 684 (904)
Q Consensus 607 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~--~~~A~ 684 (904)
.|+++++++|+++.+++++|.++...|++++|+. .|.++++++|+++.+++++|.+|...|+ ...+.
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALR-----------MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999 7777888899999999999999987764 55678
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 685 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
..|++++..+|. ..+++++|.++...|++++|+.+|++++...|+.+
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 888888765543 45788999999999999999999999999999754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=179.88 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=143.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCC
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKP 616 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p 616 (904)
++..+|.++...|++++|+..|+++++.+. .....+..+.++.++|.++...|++++|+..|+++++ .+|
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAM-----DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 458889999999999999999999333221 0011123467899999999999999999999999999 788
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhc
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSL 693 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~ 693 (904)
..+.++.++|.++..+|++++|+..+++++++.+. ..+|.....+..++.++...|+ +.+|+.++++ ...
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~ 331 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA------RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNL 331 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT------TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCC
Confidence 88899999999999999999999988888875432 1245566678889999999999 8999999887 344
Q ss_pred CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 694 DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 694 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.|....++..+|.+|...|++++|..+|+++++.
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999999764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=188.83 Aligned_cols=373 Identities=13% Similarity=0.104 Sum_probs=198.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
.-..|++++|.++++++ +++.+|..+|.++...|++++|++.|.++ .++..+...+.++...|++++|+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 34678899999999998 33569999999999999999999999764 456689999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLL 177 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~ 177 (904)
+++.+.+..++ +.+...++.+|.++|++.++.+.++. | +..++..+|..+...|+|++|..+|
T Consensus 83 yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y---------- 145 (449)
T 1b89_A 83 YLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLY---------- 145 (449)
T ss_dssp ---------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHH----------
T ss_pred HHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHH----------
Confidence 99999886444 77788999999999999999888752 4 3458999999999999999998888
Q ss_pred HHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHH
Q psy17306 178 KALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENY 257 (904)
Q Consensus 178 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 257 (904)
.+ ...+..+|.++.+.|++++|++.+
T Consensus 146 ----------------------------------------------~~--------a~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 146 ----------------------------------------------NN--------VSNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ----------------------------------------------HH--------TTCHHHHHHHHHTTTCHHHHHHHH
T ss_pred ----------------------------------------------HH--------hhhHHHHHHHHHHhccHHHHHHHH
Confidence 12 246889999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccc
Q psy17306 258 RHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLG 337 (904)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (904)
+++ .++.+|...+.++...|+++.|..+... +...|+.
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~------------------------------------ 209 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------------------------------ 209 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH------------------------------------
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh------------------------------------
Confidence 998 4789999999999999999999544332 1111111
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHH
Q psy17306 338 LASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEK 417 (904)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (904)
T Consensus 210 -------------------------------------------------------------------------------- 209 (449)
T 1b89_A 210 -------------------------------------------------------------------------------- 209 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHH
Q psy17306 418 IDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLD 497 (904)
Q Consensus 418 ~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (904)
T Consensus 210 -------------------------------------------------------------------------------- 209 (449)
T 1b89_A 210 -------------------------------------------------------------------------------- 209 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHH
Q psy17306 498 YLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLA 577 (904)
Q Consensus 498 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~a 577 (904)
. ..+...|.+.|.+++|+.++++ +
T Consensus 210 -----------------------------------l----------~~lv~~Yek~G~~eEai~lLe~-----------a 233 (449)
T 1b89_A 210 -----------------------------------L----------EELINYYQDRGYFEELITMLEA-----------A 233 (449)
T ss_dssp -----------------------------------H----------HHHHHHHHHTTCHHHHHHHHHH-----------H
T ss_pred -----------------------------------H----------HHHHHHHHHCCCHHHHHHHHHH-----------H
Confidence 0 2234557789999999999999 9
Q ss_pred HHhCCchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q psy17306 578 IKQNPLLAEAYSNLGNVYKE--RGQLQEALENYRHAVRLKP-----DFIDGYINLAAALVAAGDMEQAVQAYVTALQY-- 648 (904)
Q Consensus 578 l~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-- 648 (904)
+..++.....+..+|.+|.+ .++..++++.|...+.+.| .++..|..+..+|...++++.|+....+....
T Consensus 234 L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~ 313 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 313 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTC
T ss_pred hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhh
Confidence 99999999999999999875 4577888888888888888 78889999999999999999999855443211
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH--hcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--SLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
..+.|...+ ..+.+.+.++.....|. +....++..+..++ .+||+ ....++.+.|...-...+++.+.+
T Consensus 314 ~~~~f~~~~-~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~~------r~v~~~~~~~~l~l~~~yl~~v~~ 384 (449)
T 1b89_A 314 KEGQFKDII-TKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDHT------RAVNYFSKVKQLPLVKPYLRSVQN 384 (449)
T ss_dssp CHHHHHHHH-HHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCHH------HHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred hhHHHHHHH-hchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCcH------HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 122444433 35667888888888887 66678899999999 66763 344566788888889999988776
Q ss_pred ccCChhhHHHHHHH
Q psy17306 727 FMITDEDIDVILER 740 (904)
Q Consensus 727 ~~~~~~~~~~~l~~ 740 (904)
.+ ...|...+..
T Consensus 385 ~n--~~~vnealn~ 396 (449)
T 1b89_A 385 HN--NKSVNESLNN 396 (449)
T ss_dssp TC--CHHHHHHHHH
T ss_pred hh--HHHHHHHHHH
Confidence 54 3344444333
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=175.10 Aligned_cols=204 Identities=14% Similarity=0.097 Sum_probs=167.2
Q ss_pred ccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch---HHHHHHHHHHHHHcCC
Q psy17306 524 RTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQ 600 (904)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~ 600 (904)
...|.++... +.+|..+...|++++|+..|++ ++..+|.+ +.+++.+|.++...|+
T Consensus 9 ~~~~~~~~~~----------~~~a~~~~~~g~~~~A~~~~~~-----------~l~~~p~~~~~~~a~~~lg~~~~~~~~ 67 (261)
T 3qky_A 9 RLRHSSPQEA----------FERAMEFYNQGKYDRAIEYFKA-----------VFTYGRTHEWAADAQFYLARAYYQNKE 67 (261)
T ss_dssp --CCSSHHHH----------HHHHHHHHHTTCHHHHHHHHHH-----------HGGGCSCSTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHH----------HHHHHHHHHhCCHHHHHHHHHH-----------HHHhCCCCcchHHHHHHHHHHHHHhCc
Confidence 3456666655 9999999999999999999999 99999988 8999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhChhh------HHHhhhcCcch
Q psy17306 601 LQEALENYRHAVRLKPDF---IDGYINLAAALVA--------AGDMEQAVQAYVTALQYNPSC------YLKAIETRPDF 663 (904)
Q Consensus 601 ~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~------~~~~l~~~p~~ 663 (904)
+++|+..|+++++..|++ +.+++.+|.++.. +|++++|+..|+++++..|+. ........+..
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 999999999999998854 6789999999999 999999999777776665531 11111222223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC---cHHHHHHHHHHHHHh----------cchhHHHHHHHHhhcccCC
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN---FLDAYINLGNVLKEA----------RIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~ 730 (904)
...++.+|.+|...|++++|+..|+++++.+|+ .+.+++.+|.+|..+ |++++|+.+|++++...|+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 334499999999999999999999999999998 678999999999987 9999999999999999998
Q ss_pred hhhH---HHHHHHHHHHHHHH
Q psy17306 731 DEDI---DVILERCEAKTEEL 748 (904)
Q Consensus 731 ~~~~---~~~l~~~~~~~~~~ 748 (904)
+... ...++.+...++++
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 7543 34445555544444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=170.16 Aligned_cols=236 Identities=11% Similarity=-0.009 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 10 GLLELAHREYQAGDY-ESAERHCMQLWRQETNNTGVLLLLSSIHFQCR--KLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
..+.........|.+ ++|+..+.+++..+|++..+|+..+.++...| ++++++.+++.++..+|.+..+|..++.++
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 345555566677777 58999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ----HHh---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 87 ----KER---GQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME--QAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 87 ----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
... +++++++.++.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++...
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777 78999999999999999999999999999999999999 999999999999999999999999998887
Q ss_pred CC------hHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc
Q psy17306 158 GR------LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231 (904)
Q Consensus 158 ~~------~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (904)
+. ++++++.+ .+++..+|
T Consensus 194 ~~~~~~~~~~eEl~~~--------------------------------------------------------~~aI~~~p 217 (306)
T 3dra_A 194 KHLATDNTIDEELNYV--------------------------------------------------------KDKIVKCP 217 (306)
T ss_dssp GGGCCHHHHHHHHHHH--------------------------------------------------------HHHHHHCS
T ss_pred cccchhhhHHHHHHHH--------------------------------------------------------HHHHHhCC
Confidence 76 45555444 68999999
Q ss_pred hhHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCc
Q psy17306 232 LLAEAYSNLGNVYKERGQLQE-ALENYRHAVRLK---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQ-YNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~ 301 (904)
.+..+|+.++.++...|+... ...++.+++..+ |.++.++..++.++.+.|+.++|+++|+.+.+ .+|..
T Consensus 218 ~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHH
Confidence 999999999999999998655 445777777766 88999999999999999999999999999997 78877
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-17 Score=175.07 Aligned_cols=243 Identities=16% Similarity=0.109 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHH----hhcCHHHHH---------HHHHHHHhcC
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQET---NNTGVLLLLSSIHF----QCRKLDKSA---------HFSTLAIKQN 72 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~ 72 (904)
..++..-..+...+++++|..+++++....+ .+..+++..+...+ ..+.+..+. ..++.+-...
T Consensus 13 ~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 92 (378)
T 3q15_A 13 GVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ 92 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC
Confidence 3455556667899999999999998755322 34444433322222 223333333 5555543221
Q ss_pred cc-----cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy17306 73 PL-----LAEAYSNLGNVYKERGQLQEALENYRHAVRLKP------DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 141 (904)
Q Consensus 73 p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 141 (904)
.. ....++.+|..+...|++++|+..|++++.+.+ ..+.++..+|.++...|++++|+..+++++++.+
T Consensus 93 ~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 11 123677899999999999999999999998732 2456899999999999999999999999998744
Q ss_pred C-------hhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCc
Q psy17306 142 D-------LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKP 214 (904)
Q Consensus 142 ~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (904)
. ...++..+|.++...|++++|+..+ .+|+.+.++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~----------------~~al~~~~~---------------------- 214 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL----------------EAALELAMD---------------------- 214 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHH----------------------
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHH----------------HHHHHHHHH----------------------
Confidence 3 2456778888888888888888877 444444321
Q ss_pred chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 215 TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-----LKPDFIDGYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (904)
....+..+.++.++|.++...|++++|+.+|++++. .+|..+.++..+|.++...|++++|+.
T Consensus 215 ------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 215 ------------IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 112234467899999999999999999999999999 678888999999999999999999999
Q ss_pred HHHHHHhhCCCc
Q psy17306 290 AYVTALQYNPLL 301 (904)
Q Consensus 290 ~~~~al~~~p~~ 301 (904)
+++++++..+..
T Consensus 283 ~~~~al~~~~~~ 294 (378)
T 3q15_A 283 FIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHc
Confidence 999999987764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-15 Score=169.88 Aligned_cols=453 Identities=10% Similarity=0.016 Sum_probs=300.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc---HHHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ---LQEALENY 99 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 99 (904)
...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+..-...|+ ++.+...|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 355667789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCC--CCHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhc----CCChhhHHHHHHHHHHHc--------
Q psy17306 100 RHAVRLKP--DFIDGYINLAAALVAAGDM----EQ----AVQAYVTALQY----NPDLYCVRSDLGNLLKAL-------- 157 (904)
Q Consensus 100 ~~al~~~p--~~~~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~~-------- 157 (904)
++++...| .++..|..........++. ++ ....|++|+.. +|.+..+|..........
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999984 5677888777666665543 33 44778888763 666667777776665432
Q ss_pred -CChHHHHHHHHHHHhh-----HHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHH------
Q psy17306 158 -GRLDEAKDLYCVRSDL-----GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL------ 225 (904)
Q Consensus 158 -~~~~~A~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------ 225 (904)
++.+.+..+|.....+ ..++..-..++.. +....... .... .......+...+..
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~-------~~~~~a~~---~~~e---~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD-------VNQLTARR---HIGE---LSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH-------HCTTTHHH---HHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh-------cCcchHHH---HHHH---hhHHHHHHHHHHHHHHHHHH
Confidence 2334444444221110 0111000000000 00000000 0000 00000000000000
Q ss_pred Hhhc-C------------c-------hhHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 226 AIKQ-N------------P-------LLAEAYSNLGNVYKERG-------QLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 226 ~~~~-~------------~-------~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.+.. . | .....|......-...+ ........|++++...|.++..|+..+..+
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQ 353 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0000 0 1 11223333322221111 123455678888888888888888888888
Q ss_pred HHcCCHHHHH-HHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHH
Q psy17306 279 VAAGDMEQAV-QAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIK 357 (904)
Q Consensus 279 ~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (904)
...|+.++|. ..|++++...|.+.
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~------------------------------------------------------- 378 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSA------------------------------------------------------- 378 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCH-------------------------------------------------------
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCH-------------------------------------------------------
Confidence 8888777776 88888887777550
Q ss_pred hhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchh
Q psy17306 358 IECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKA 437 (904)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~ 437 (904)
T Consensus 379 -------------------------------------------------------------------------------- 378 (679)
T 4e6h_A 379 -------------------------------------------------------------------------------- 378 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHH
Q psy17306 438 DKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLL 517 (904)
Q Consensus 438 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 517 (904)
T Consensus 379 -------------------------------------------------------------------------------- 378 (679)
T 4e6h_A 379 -------------------------------------------------------------------------------- 378 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCC-----------chHH
Q psy17306 518 DSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNP-----------LLAE 586 (904)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p-----------~~~~ 586 (904)
.+|...+.+....|+++.|..+|++.++.....+.......| ....
T Consensus 379 -----------------------~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 379 -----------------------VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 012344445556677777777777733321111110111123 2456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRL-KPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+|...+....+.|+.+.|...|.+|++. .+.....|...|.+-...+ +++.|.. .|.++++..|+++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~-----------ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK-----------VLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH-----------HHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHHCCCch
Confidence 8999999999999999999999999998 4455677888888777765 4899999 5555556677888
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc---CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP---NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
..|...+......|+.+.|...|++|+...| ....+|......-...|+.+.+..+++++....|+++.+...
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8898999999999999999999999999988 467888888888999999999999999999999987655544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=163.96 Aligned_cols=146 Identities=17% Similarity=0.152 Sum_probs=136.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHH
Q psy17306 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 93 (904)
Q Consensus 14 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 93 (904)
+|..+...|++++|+..+++++..+|.++..++.+|.+|+..|++++|+.+|+++++++|+++.+|+.+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy17306 94 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA-YVTALQYNPDLYCVRSDLGNLLKALGR 159 (904)
Q Consensus 94 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~~~ 159 (904)
+|+.+|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999887776 599999999999999999999988775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=164.15 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++..|..++..|++++|+..|+++++.+|+++.+++..+.. . .....+.....+|.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~-------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----K-------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----T-------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----c-------------hhhhhHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555554442210 0 00011223344999999
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH--HHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE--AKD 165 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~--A~~ 165 (904)
..|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|...|.... +..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876654322 222
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ .+++...|. ..+++.+|.++.
T Consensus 146 ~~--------------------------------------------------------~~~~~~~~~-~~a~~~~g~~~~ 168 (208)
T 3urz_A 146 DY--------------------------------------------------------KKLSSPTKM-QYARYRDGLSKL 168 (208)
T ss_dssp HH--------------------------------------------------------C---CCCHH-HHHHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHhCCCch-hHHHHHHHHHHH
Confidence 22 233333332 346778899999
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (904)
..|++++|+.+|+++++++|+. .+...+..+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 9999999999999999999973 344444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=200.08 Aligned_cols=191 Identities=13% Similarity=0.057 Sum_probs=176.0
Q ss_pred hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC
Q psy17306 36 RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI--------KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107 (904)
Q Consensus 36 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 107 (904)
..+|.++.+++..| ...|++++|+..+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45788888888777 88999999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHH
Q psy17306 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAK 187 (904)
Q Consensus 108 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~ 187 (904)
++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~-------------------- 523 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY-------------------- 523 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH--------------------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH--------------------
Confidence 9999999999999999999999999999999999999999999999999999998 8888
Q ss_pred HHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC
Q psy17306 188 NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 267 (904)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 267 (904)
++++..+|+++.+++++|.++...|++++|+..|+++++++|++
T Consensus 524 ------------------------------------~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 524 ------------------------------------QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp ------------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred ------------------------------------HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHH
Q psy17306 268 IDGYINLAAALVAAGDMEQ 286 (904)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~ 286 (904)
..++.++|.++...++.++
T Consensus 568 ~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 568 TTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHccCCCCC
Confidence 9999999999988766333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=150.58 Aligned_cols=121 Identities=26% Similarity=0.307 Sum_probs=113.4
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
+..++|+.+.++.++|.++...|++++|+..|+++++++|.++.++.++|.++..+|++++|+. .+.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-----------~~~~a 73 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-----------DCDTC 73 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-----------HHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++.+++.++
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999998874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-18 Score=175.53 Aligned_cols=209 Identities=16% Similarity=0.179 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP------LLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
++++|+..|+++ |.++...|++++|+..|.+++.+.+ ..+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888888776 6788899999999999999998743 23679999999999999999999
Q ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHH
Q psy17306 97 ENYRHAVRLKPDF------IDGYINLAAALVAA-GDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 97 ~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A 163 (904)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|.+ ..++..+|.++...|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999987643 45889999999996 99999999999999987754 35677778888888888777
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhH-------HH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLA-------EA 236 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 236 (904)
+..| ++++...|.+. .+
T Consensus 178 ~~~~--------------------------------------------------------~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 178 SDIY--------------------------------------------------------SKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHH--------------------------------------------------------HHHHHTTSSCTTTGGGHHHH
T ss_pred HHHH--------------------------------------------------------HHHHHHHhcCCcccHHHHHH
Confidence 7777 45555555432 36
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----YINLAAALV--AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 237 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+..+|.++...|++++|+.+|++++.++|..... +..++..+. ..+++++|+..|++++.++|..
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 8899999999999999999999999999987653 445666654 4678999999999998888866
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=162.35 Aligned_cols=157 Identities=8% Similarity=0.030 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy17306 554 GSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ--EALENYRHAVRLKPDFIDGYINLAAALVA 631 (904)
Q Consensus 554 ~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 631 (904)
+++++++.++.+ ++..+|.+..+|+.++.+....|.++ ++++.+.++++.+|.+..+|...+.+...
T Consensus 124 ~~~~~EL~~~~~-----------~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 124 FDPYREFDILEA-----------MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp CCTHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 678899999999 99999999999999999999999998 99999999999999999999999999999
Q ss_pred cCC------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhcC---cCcHHHH
Q psy17306 632 AGD------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLD---PNFLDAY 701 (904)
Q Consensus 632 ~g~------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~-A~~~~~~al~~~---p~~~~a~ 701 (904)
.|+ ++++++ .+.+++..+|++..+|+.++.++...|+... ...++.+++.++ |.++.++
T Consensus 193 l~~~~~~~~~~eEl~-----------~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 193 KKHLATDNTIDEELN-----------YVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp SGGGCCHHHHHHHHH-----------HHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred ccccchhhhHHHHHH-----------HHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 987 888888 7788888999999999999999999998555 556888888876 8899999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhc-ccCChh
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSY-FMITDE 732 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~ 732 (904)
..+|.++.+.|+.++|+++|+.+.+ ..|-..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~ 293 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRS 293 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHH
Confidence 9999999999999999999999876 455433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-18 Score=160.60 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=159.4
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
..+..+|..+...|++++|+..+++ ++..+|.++.++..+|.++...|++++|+..++++++..|+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 77 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQ-----------VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT-----------TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 4568899999999999999999999 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
++..+|.++...|++++|+. .+.+++..+|+++.++..+|.++...|++++|+..|+++++.+|.++.+
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 146 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVP-----------LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHH
Confidence 99999999999999999999 6666666788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+..+|.++...|++++|..+|++++...|++
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999998877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.9e-18 Score=194.23 Aligned_cols=180 Identities=11% Similarity=-0.034 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLW--------RQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
+++..| ...|++++|+..+++++ ..+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.
T Consensus 396 a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 396 ASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp HHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 344444 78999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
+|+..| ++++..+|++..++..+|
T Consensus 552 ~A~~~~--------------------------------------------------------~~al~l~P~~~~a~~~~~ 575 (681)
T 2pzi_A 552 GAVRTL--------------------------------------------------------DEVPPTSRHFTTARLTSA 575 (681)
T ss_dssp HHHHHH--------------------------------------------------------HTSCTTSTTHHHHHHHHH
T ss_pred HHHHHH--------------------------------------------------------HhhcccCcccHHHHHHHH
Confidence 999988 789999999999999999
Q ss_pred HHHHHhCC
Q psy17306 242 NVYKERGQ 249 (904)
Q Consensus 242 ~~~~~~g~ 249 (904)
.++...++
T Consensus 576 ~~~~~~~~ 583 (681)
T 2pzi_A 576 VTLLSGRS 583 (681)
T ss_dssp HHTC----
T ss_pred HHHHccCC
Confidence 99987665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=156.77 Aligned_cols=166 Identities=17% Similarity=0.192 Sum_probs=159.3
Q ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 2 ~~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
++....+..++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|.+..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp --CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17306 162 EAKDLY 167 (904)
Q Consensus 162 ~A~~~~ 167 (904)
+|...+
T Consensus 162 ~A~~~~ 167 (186)
T 3as5_A 162 EALPHF 167 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999888
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=170.40 Aligned_cols=268 Identities=16% Similarity=0.034 Sum_probs=215.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc----
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT-----GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---- 75 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 75 (904)
...+..++.+|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|..
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34577888999999999999999999999999877643 267889999999999999999999999875542
Q ss_pred --HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--
Q psy17306 76 --AEAYSNLGNVYKERGQLQEALENYRHAVRLK--------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-- 143 (904)
Q Consensus 76 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 143 (904)
..++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...+..
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 3457899999999999999999999999874 3345678889999999999999999999999987642
Q ss_pred ---hhHHHHHHHHHHHcCChHHHHHHHHHHH------------------hhHHHHHHcCCHHHHHHHHhhcCCCcchhhH
Q psy17306 144 ---YCVRSDLGNLLKALGRLDEAKDLYCVRS------------------DLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202 (904)
Q Consensus 144 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 202 (904)
..++..+|.++...|++++|...++... ..+.++...|++++|...+.+.+.....
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--- 247 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--- 247 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC---
Confidence 3567889999999999999998883211 1223356777777777777654432110
Q ss_pred HHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC------CHHHHHHHHH
Q psy17306 203 NAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAA 276 (904)
Q Consensus 203 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~ 276 (904)
..+.....+..+|.++...|++++|...+++++...+. ...++..+|.
T Consensus 248 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 248 --------------------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp --------------------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 00111335678999999999999999999999876432 2347888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 277 ALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
++...|++++|...+++++...+..
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999876643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-16 Score=165.72 Aligned_cols=176 Identities=18% Similarity=0.111 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh------
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY------ 144 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 144 (904)
..++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34566777777788888888888888877765442 2567778888888888888888888887654332
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHH
Q psy17306 145 CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFST 224 (904)
Q Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 224 (904)
.++..+|.++...|++++|+..+ ++++.......
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~----------------~~al~~~~~~~------------------------------ 127 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQ----------------EKAFQLINEQH------------------------------ 127 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH----------------HHHHHHHHHhc------------------------------
Confidence 23556677777777777776666 33333222100
Q ss_pred HHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-----IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 225 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
....|....++..+|.++...|++++|..++++++...+.. ..++..+|.++...|++++|...+++++...+
T Consensus 128 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 128 --LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp --CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred --cccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 00124456677888888888999999999999888876542 35677788888888888888888887776533
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=160.38 Aligned_cols=205 Identities=15% Similarity=0.078 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccH---HHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNN---TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLA---EAYSN 81 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 81 (904)
+.+++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|++++|+..|+++++.+|++. .+++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 5678889999999999999999999999888876 46888999999999999999999999999888865 37888
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 82 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 82 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
+|.++...|.. ....+..++..+...|++++|+..|+++++.+|++..+...+..+...
T Consensus 84 ~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----- 142 (225)
T 2yhc_A 84 RGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----- 142 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH-----
T ss_pred HHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-----
Confidence 88888776632 122345567777778999999999999999999987654332211110
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHH
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLG 241 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg 241 (904)
..........+|
T Consensus 143 --------------------------------------------------------------------~~~~~~~~~~~a 154 (225)
T 2yhc_A 143 --------------------------------------------------------------------KDRLAKYEYSVA 154 (225)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 011123446789
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 242 NVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..++.+....|++
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999986 689999999999999999999999999998887
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=170.89 Aligned_cols=219 Identities=12% Similarity=0.024 Sum_probs=175.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc--
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETN------NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-- 75 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 75 (904)
+......+...|..+...|++++|+..|.+++...+. .+.++..+|.+|...|++++|+.+|++++.+.|..
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4445556667788889999999999999999987432 26789999999999999999999999999987653
Q ss_pred ----HHHHHHHHHHHHHh-CcHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 76 ----AEAYSNLGNVYKER-GQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 76 ----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
+.++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+..|++++++.|++.
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 56899999999996 99999999999999997754 46789999999999999999999999999998765
Q ss_pred h-------HHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 145 C-------VRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 145 ~-------~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
. ++..+|.++...|++++|+..+
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~-------------------------------------------------- 222 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTL-------------------------------------------------- 222 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHH--------------------------------------------------
Confidence 3 4677788888888887777777
Q ss_pred HHhhHHHHHhhcCchhHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 218 ESAHFSTLAIKQNPLLAE-----AYSNLGNVYK--ERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~-----~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
++++..+|.... .+..++..+. ..+++++|+..|++++.++|.....+..+-...
T Consensus 223 ------~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 223 ------QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp ------HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred ------HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 466666665443 3445566554 467899999999999999888766666655544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-16 Score=157.94 Aligned_cols=247 Identities=12% Similarity=0.031 Sum_probs=202.6
Q ss_pred HHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHhcCcccHHHHHH
Q psy17306 13 ELAHREYQAGDYE-SAERHCMQLWRQETNNTGVLLLLSSIHFQCRK----------LDKSAHFSTLAIKQNPLLAEAYSN 81 (904)
Q Consensus 13 ~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~ 81 (904)
.........|+++ +|+..+..++..+|.+..+|+..+.+....+. +++++.+++.++..+|.+..+|..
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h 113 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 113 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344445678886 79999999999999999999999999988776 789999999999999999999999
Q ss_pred HHHHHHHhCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 82 LGNVYKERGQ--LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD-MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 82 la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
++.++...|+ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.|..+|..++.++...+
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999999994 9999999999999999999999999999999999 699999999999999999999999999988774
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (904)
....+-... -...+.+++++. ++.+++..+|++..+|+
T Consensus 194 ~~~~~~~~~---------~~~~~~~~eEle---------------------------------~~~~ai~~~P~d~SaW~ 231 (331)
T 3dss_A 194 PQPDSGPQG---------RLPENVLLKELE---------------------------------LVQNAFFTDPNDQSAWF 231 (331)
T ss_dssp CCC---------------CCCHHHHHHHHH---------------------------------HHHHHHHHSTTCHHHHH
T ss_pred hcccccccc---------ccchHHHHHHHH---------------------------------HHHHHHHhCCCCHHHHH
Confidence 321110000 000011223333 33689999999999998
Q ss_pred HHHHHHHHh-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCc
Q psy17306 239 NLGNVYKER-----------GQLQEALENYRHAVRLKPDFIDGYINLAAALV---AAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 239 ~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.+..++... +.+++++..++++++..|++...+..++.+.. ..|..++...++.++++++|..
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 776666655 56899999999999999999666555554432 3578889999999999999987
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-14 Score=162.97 Aligned_cols=448 Identities=8% Similarity=0.022 Sum_probs=309.7
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcCc--ccHHH
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRK---LDKSAHFSTLAIKQNP--LLAEA 78 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~ 78 (904)
.|..-..|...+......+.+..+...|++++...|.....|...+..-...|. ++.+..+|++++...| .+...
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 355567788888888889999999999999999999999999999999999999 9999999999999883 56778
Q ss_pred HHHHHHHHHHhCcH--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQL--------QEALENYRHAVRL----KPDFIDGYINLAAALV---------AAGDMEQAVQAYVTAL 137 (904)
Q Consensus 79 ~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al 137 (904)
|..........++. +.....|++|+.. +|....+|........ ..++.+.+...|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88877666655543 3445888888864 6666777766665433 3456788999999999
Q ss_pred hcCCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhh------cCCCc------------
Q psy17306 138 QYNPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE------NIKPV------------ 197 (904)
Q Consensus 138 ~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~------------ 197 (904)
.+ |.. ...|......-...+... +...+ -.....|..|...+.+ .+...
T Consensus 222 ~i-P~~~~~~~w~~Y~~fe~~~~~~~-a~~~~---------~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 222 CQ-PMDCLESMWQRYTQWEQDVNQLT-ARRHI---------GELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp TS-CCSSHHHHHHHHHHHHHHHCTTT-HHHHH---------HHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred hC-ccHHHHHHHHHHHHHHHhcCcch-HHHHH---------HHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 75 432 233333333222222211 21111 0011122333333321 11110
Q ss_pred -c-------h--hhHHHHH-HhhcCCCc-----chHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHH-HHHHHH
Q psy17306 198 -T-------M--KVQNAIV-CNYGGRKP-----TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL-ENYRHA 260 (904)
Q Consensus 198 -~-------~--~~~~~~~-~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~a 260 (904)
+ . ......+ ........ ........|++++...|..+..|+..+..+...|+.++|. ..|+++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 0 0001111 11111100 1123456789999999999999999999999999999997 999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhh
Q psy17306 261 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLAS 340 (904)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (904)
+...|.+...|+.++......|++++|...|++++...+....
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~------------------------------------- 413 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA------------------------------------- 413 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-------------------------------------
Confidence 9999999999999999999999999999999999875332100
Q ss_pred hhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhh
Q psy17306 341 AIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDF 420 (904)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (904)
T Consensus 414 -------------------------------------------------------------------------------- 413 (679)
T 4e6h_A 414 -------------------------------------------------------------------------------- 413 (679)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHH
Q psy17306 421 DTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLN 500 (904)
Q Consensus 421 A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 500 (904)
..... .|.....
T Consensus 414 ---~~~~~--~p~~~~~--------------------------------------------------------------- 425 (679)
T 4e6h_A 414 ---ALMED--DPTNESA--------------------------------------------------------------- 425 (679)
T ss_dssp ---HHHHH--STTCHHH---------------------------------------------------------------
T ss_pred ---hhhhc--cCcchhh---------------------------------------------------------------
Confidence 00000 0000000
Q ss_pred HHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHh
Q psy17306 501 ELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQ 580 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~ 580 (904)
....-.....+|...+.+..+.|..+.|..+|.+ +++.
T Consensus 426 -------------------------------~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~-----------A~~~ 463 (679)
T 4e6h_A 426 -------------------------------INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK-----------CRRL 463 (679)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----------HHHT
T ss_pred -------------------------------hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHh
Confidence 0000000112345555566667888999999999 8776
Q ss_pred -CCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 581 -NPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 581 -~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
.+....+|...|.+....+ +.+.|...|+++++..|+++..|...+......|+.+.|...|++++ .
T Consensus 464 ~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal-----------~ 532 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSI-----------D 532 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT-----------T
T ss_pred cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-----------H
Confidence 4444667777777776665 48999999999999999999999999999999999999999555555 4
Q ss_pred cCc---chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 659 TRP---DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 659 ~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
..| .....|......-...|+.+.+...++++++..|+++.+
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 444 456788888888889999999999999999999987543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=171.53 Aligned_cols=232 Identities=21% Similarity=0.209 Sum_probs=171.9
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------CcccHHHHHHH
Q psy17306 19 YQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--------NPLLAEAYSNL 82 (904)
Q Consensus 19 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l 82 (904)
...|++++|+..|+++++. .|..+.++..+|.++...|++++|+.++++++.. +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888899988888873 3567889999999999999999999999999987 47788899999
Q ss_pred HHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhH
Q psy17306 83 GNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCV 146 (904)
Q Consensus 83 a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 146 (904)
|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+..+++++++ .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 4666789999999999999999999999999998 7777889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHH
Q psy17306 147 RSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLA 226 (904)
Q Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 226 (904)
+..+|.++...|++++|+..+ ++++...... ..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~----------------~~~l~~~~~~-------------------------------~~ 204 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLY----------------KEILTRAHEK-------------------------------EF 204 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH----------------HHHHHHHHHH-------------------------------HS
T ss_pred HHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHh-------------------------------cC
Confidence 999999999999999999988 4444443220 00
Q ss_pred hhcCchhHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 227 IKQNPLLAEAYSNLGNVYKERGQ------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297 (904)
Q Consensus 227 ~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (904)
....+.....+..++......+. +.++...++......|..+.++..+|.++...|++++|+.+|+++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01123333444444444443332 333333333333334445566777777777777777777777777654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=144.92 Aligned_cols=121 Identities=28% Similarity=0.302 Sum_probs=96.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHH
Q psy17306 34 LWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113 (904)
Q Consensus 34 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 113 (904)
+..++|+.++++..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34567777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
+.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88888888888888888888888888888888777777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=156.55 Aligned_cols=161 Identities=9% Similarity=-0.053 Sum_probs=144.6
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
...|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..|++++..+| ++..+.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~-----------al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQT-----------LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----------SCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-----------HHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence 7788999999999999999999 9999999999999999999999999999999999999999 887776
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHH
Q psy17306 624 NLAAALV-AAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDA 700 (904)
Q Consensus 624 ~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a 700 (904)
.++.+.. ..++..+|+. .+.++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.+
T Consensus 78 ~~~~~~~~~~~~~~~a~~-----------~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELK-----------RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp HHHHHHHHHHHTSCHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHH
T ss_pred HHHHHHHHhhcccchHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHH
Confidence 6665533 3233445677 7778888999999999999999999999999999999999999976 669
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+.++|.++..+|+.++|+..|++++.+
T Consensus 147 ~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999999998764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-17 Score=158.87 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=150.9
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
.++.+|..+...|++++|+..|++ ++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~-----------~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEA-----------LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 458889999999999999999999 99888865 4799999999999999999999999999999998
Q ss_pred HH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhChhh------HHHhhhcCcchHHHHHHHH
Q psy17306 619 ID---GYINLAAALVA------------------AGDMEQAVQAYVTALQYNPSC------YLKAIETRPDFAVAWSNLG 671 (904)
Q Consensus 619 ~~---a~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~------~~~~l~~~p~~~~a~~~lg 671 (904)
+. +++.+|.++.. .|++++|+..|+++++..|+. ..+...+..........+|
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 89999999886 578999999777777666541 1111112222233447889
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCcCcH---HHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 672 CVFNAQGEIWLAIHHFEKAVSLDPNFL---DAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
.+|...|++++|+..|+++++..|+++ .+++.+|.++.++|++++|++.|+++....|+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999999999999999999875 789999999999999999999999988877754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=150.59 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..++++++++|+++.+++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.++..+|++++|+.
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~-----------~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEV-----------FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 44556666677777777777777777777777777 5555556666667777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+|+++++++|+++.+++++|.+|..+|++++|+.+|++++...++++
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777777777777777777777777776666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=161.74 Aligned_cols=212 Identities=18% Similarity=0.200 Sum_probs=174.3
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc---
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQ--------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ--- 71 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 71 (904)
+.|..+.++..+|..+...|++++|+..+++++.. .|..+.++..+|.++...|++++|+.++++++..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44778899999999999999999999999999977 3566789999999999999999999999999987
Q ss_pred -----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 72 -----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138 (904)
Q Consensus 72 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 138 (904)
+|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..++++++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999998 677788999999999999999999999999998
Q ss_pred c---------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhh
Q psy17306 139 Y---------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNY 209 (904)
Q Consensus 139 ~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 209 (904)
+ .+.....+..++..+...+....+... ..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~------------------- 241 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-----------------GEYGSWY------------------- 241 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------------------------------------------
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-----------------HHHHHHH-------------------
Confidence 7 444455666666666555444333221 1222222
Q ss_pred cCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q psy17306 210 GGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264 (904)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 264 (904)
.......|..+.++..+|.++...|++++|+.+|+++++..
T Consensus 242 --------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 242 --------------KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred --------------HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 23334567888999999999999999999999999998753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=147.51 Aligned_cols=111 Identities=14% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+. .|.++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~-----------~~~~a 96 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD-----------LYAVA 96 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH-----------HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999 77788
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888999999999999999999999999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=161.47 Aligned_cols=162 Identities=10% Similarity=-0.018 Sum_probs=153.8
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..+|..+...|++++|+..|++ ++..+|+++.+++.+|.++...|++++|+..|++++..+|+......
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~-----------al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXD-----------AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-----------HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 8899999999999999999999 99999999999999999999999999999999999999998887888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc--HHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF--LDAY 701 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~ 701 (904)
..+..+...++.++|+. .+.+++..+|+++.+++++|.++...|++++|+..|+++++.+|++ +.++
T Consensus 190 ~~~~~l~~~~~~~~a~~-----------~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQ-----------QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHTSCHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHhhcccCccHH-----------HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 88888999999999999 7778888999999999999999999999999999999999999998 8999
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
.++|.++...|+.++|...|++++.+
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999998764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=168.61 Aligned_cols=184 Identities=18% Similarity=0.108 Sum_probs=161.0
Q ss_pred hhHHHHHHHhccc----ccccCCCCcchHHHHHHHHHHHhhCchhHh------------hcCChhHHHHHHHHHhhhhhh
Q psy17306 509 PNKFKAYLLDSGK----SWRTNPEHPNYVAAARATKYVYNVEPDLTR------------EGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 509 ~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~l~~a~~ 572 (904)
...+..++..+.. .+.+.|+.. |...|.... ..+++++|+..+++
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~a------------yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~------- 138 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSYA------------FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM------- 138 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTTT------------TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC-------
T ss_pred chHHHHHHhcCCCCCeEEEEECCccc------------cCcCCCCccCCCCCCeEEEEEEEeecccccchhcC-------
Confidence 4567777888877 888888752 244554432 56777888888877
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHcCCHHH
Q psy17306 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---------------IDGYINLAAALVAAGDMEQ 637 (904)
Q Consensus 573 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~ 637 (904)
++..+|..+.++..+|.++...|++++|+..|+++++++|++ ..++.++|.++..+|++++
T Consensus 139 ----a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 139 ----NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 888899999999999999999999999999999999999998 6899999999999999999
Q ss_pred HHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHH
Q psy17306 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 638 A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 717 (904)
|+. .+.++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.++.++|.++..+|++++|
T Consensus 215 A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 215 AIE-----------SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 777777888999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhhc
Q psy17306 718 -NTLFYVSSY 726 (904)
Q Consensus 718 -~~~~~~a~~ 726 (904)
...|++++.
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=145.19 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..|++++.++|++..+++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.++...|++++|+.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHX-----------VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHH-----------HHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 45667777777777777777777777777777777 5555556667777777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEEL 748 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 748 (904)
.|++++.++|+++.+++++|.++..+|++++|+.+|++++...|++........++...+..+
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777666555555555555444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-15 Score=150.41 Aligned_cols=237 Identities=10% Similarity=-0.043 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
.++-.........+..++|+..+.+++..+|.+..+|+..+.++...| .+++++.+++.++..+|.+..+|..++.++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333333444445556679999999999999999999999999999999 5999999999999999999999999999999
Q ss_pred Hh-C-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 88 ER-G-QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME--------QAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 88 ~~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
.. + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++.++++++.+|.|..+|...+.++...
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 98 8 9999999999999999999999999999999998888 999999999999999999999999999888
Q ss_pred CC-------hHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 158 GR-------LDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 158 ~~-------~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
+. ++++++.+ .+++..+
T Consensus 215 ~~~~~~~~~~~eELe~~--------------------------------------------------------~~aI~~~ 238 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYI--------------------------------------------------------LKSIHLI 238 (349)
T ss_dssp TTCCCCHHHHHHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred cccccchHHHHHHHHHH--------------------------------------------------------HHHHHhC
Confidence 76 33333333 6899999
Q ss_pred chhHHHHHHHHHHHHHhCCH--------------------HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCH
Q psy17306 231 PLLAEAYSNLGNVYKERGQL--------------------QEALENYRHAVRLK------PDFIDGYINLAAALVAAGDM 284 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~--------------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~ 284 (904)
|++..+|+.+..++...|+. ..-.......+... +..+.++..++.+|...|+.
T Consensus 239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 99999999999998887764 22222222222222 46788999999999999999
Q ss_pred HHHHHHHHHHH-hhCCCc
Q psy17306 285 EQAVQAYVTAL-QYNPLL 301 (904)
Q Consensus 285 ~~A~~~~~~al-~~~p~~ 301 (904)
++|.+.++.+. +.+|-.
T Consensus 319 ~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp HHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHhhhChHH
Confidence 99999999987 556654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=147.95 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999 7777766665543
Q ss_pred -HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHHcCChHHHH
Q psy17306 88 -ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAK 164 (904)
Q Consensus 88 -~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~ 164 (904)
..+...+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. ..++..++.++...|+.++|+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 33344568999999999999999999999999999999999999999999999976 569999999999999999999
Q ss_pred HHH
Q psy17306 165 DLY 167 (904)
Q Consensus 165 ~~~ 167 (904)
..|
T Consensus 165 ~~y 167 (176)
T 2r5s_A 165 SKY 167 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-14 Score=142.56 Aligned_cols=232 Identities=12% Similarity=0.077 Sum_probs=189.7
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HH
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD--ME 285 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~ 285 (904)
+++.....++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.++...|+ ++
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 34444469999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy17306 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDL 365 (904)
Q Consensus 286 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+++..+.++++.+|.++
T Consensus 128 ~EL~~~~k~l~~dprNy--------------------------------------------------------------- 144 (331)
T 3dss_A 128 RELELCARFLEADERNF--------------------------------------------------------------- 144 (331)
T ss_dssp HHHHHHHHHHHHCTTCH---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCH---------------------------------------------------------------
Confidence 99999999999999881
Q ss_pred cccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhh
Q psy17306 366 HSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMS 445 (904)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~ 445 (904)
T Consensus 145 -------------------------------------------------------------------------------- 144 (331)
T 3dss_A 145 -------------------------------------------------------------------------------- 144 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhccccccc
Q psy17306 446 RWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRT 525 (904)
Q Consensus 446 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 525 (904)
T Consensus 145 -------------------------------------------------------------------------------- 144 (331)
T 3dss_A 145 -------------------------------------------------------------------------------- 144 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhCchhHhhcCC-hhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHc------
Q psy17306 526 NPEHPNYVAAARATKYVYNVEPDLTREGGS-IPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER------ 598 (904)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~------ 598 (904)
.+|...+.+....|. +++++.++.+ ++..+|.+..+|..++.++...
T Consensus 145 ---------------~AW~~R~~vl~~l~~~~~eel~~~~~-----------~I~~~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 145 ---------------HCWDYRRFVAAQAAVAPAEELAFTDS-----------LITRNFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp ---------------HHHHHHHHHHHHTTCCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred ---------------HHHHHHHHHHHHhCcCHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence 012333444444555 5888999988 9999999999999999999887
Q ss_pred --------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-C----------CHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 599 --------GQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-G----------DMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 599 --------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g----------~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+.++++++++.+++..+|++..+|+.+..++... | .++++++ .+.+.++.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~-----------~~~elle~ 267 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE-----------SCKELQEL 267 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH-----------HHHHHHhh
Confidence 5689999999999999999999998777766655 3 3555555 77777788
Q ss_pred CcchHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 660 RPDFAVAWSNLGCVFN---AQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
.|++...+..++.+.. ..|..++...++.+.+++||....-|..++.-+.
T Consensus 268 ~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 268 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 8888666555554433 3678899999999999999998888877766554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=174.56 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=134.9
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA 632 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 632 (904)
.|++++|+..|++ +++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus 2 ~g~~~~A~~~~~~-----------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRA-----------AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4788899999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHh-
Q psy17306 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA- 711 (904)
Q Consensus 633 g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~- 711 (904)
|++++|+. .+.++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.++.++|.++..+
T Consensus 71 g~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 71 QRHAEAAV-----------LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp TCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 99999999 666777788999999999999999999999999999999999999999999999999999
Q ss_pred --cchhHHHHHHHHhhcccCChhhHH
Q psy17306 712 --RIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 712 --g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
|++++|.+.|++++...++.....
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred ccccHHHHHHHHHHHHhcCCcccChH
Confidence 999999999999999888754433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=141.84 Aligned_cols=123 Identities=15% Similarity=0.000 Sum_probs=112.4
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 575 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 575 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
.+++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+. .|.
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~ 79 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH-----------SYS 79 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHH
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH-----------HHH
Confidence 338999999999999999999999999999999999999999999999999999999999999999 777
Q ss_pred HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+++..+|+++.+++++|.++..+|++++|+..|+++++++|+++........+.
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 777889999999999999999999999999999999999988776544444333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-15 Score=152.94 Aligned_cols=170 Identities=18% Similarity=0.053 Sum_probs=153.0
Q ss_pred cCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHH
Q psy17306 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDL 150 (904)
Q Consensus 71 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 150 (904)
..|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34888889999999999999999999999999999999999999999999999999999999999999999777677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcC
Q psy17306 151 GNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQN 230 (904)
Q Consensus 151 a~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 230 (904)
+..+...++.++|+..+ ++++..+
T Consensus 192 ~~~l~~~~~~~~a~~~l--------------------------------------------------------~~al~~~ 215 (287)
T 3qou_A 192 QIELLXQAADTPEIQQL--------------------------------------------------------QQQVAEN 215 (287)
T ss_dssp HHHHHHHHTSCHHHHHH--------------------------------------------------------HHHHHHC
T ss_pred HHHHHhhcccCccHHHH--------------------------------------------------------HHHHhcC
Confidence 77777778877777777 6888999
Q ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 231 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF--IDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 231 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
|+++.+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 88999999999999999999999999875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=139.06 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=93.4
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..|++++.++|++..+++.+|.++...|++++|+. .|.+++..+|+++.+|+.+|.++...|++++|+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 73 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQK-----------IFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ 73 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHH-----------HHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666677777777777777777777777777777 5555556667777777777777777777777777
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
.|++++.++|+++.+++++|.++..+|++++|+.+|++++...|++.........+...++.+++.
T Consensus 74 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 74 SYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777766666666666666655555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=148.52 Aligned_cols=208 Identities=11% Similarity=-0.007 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------HHHHHhhcCHHHHHHHHHHHHhcCcccH----
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLL-------SSIHFQCRKLDKSAHFSTLAIKQNPLLA---- 76 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---- 76 (904)
...+|..|.-+ ..+++..|...|.+++..+|..+++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 44566666665 57777777777777777777777777777 6777777777777777777777666532
Q ss_pred -----------------HHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 77 -----------------EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 77 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.+...++.++...|+|++|.+.|..++...|.+. +.+.+|.++...++|++|+..|+.+...
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 2334466667777777777777777766667666 6777777777777777777777666553
Q ss_pred CCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 140 NPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 140 ~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
.+.. ..+++.+|.++..+|++++|+..|
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l-------------------------------------------------- 194 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRL-------------------------------------------------- 194 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHH--------------------------------------------------
Confidence 2111 235666666666666666666655
Q ss_pred HHhhHHHHHhhcC--ch-hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy17306 218 ESAHFSTLAIKQN--PL-LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274 (904)
Q Consensus 218 ~a~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 274 (904)
++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..+...|
T Consensus 195 ------~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 195 ------TEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp ------HHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred ------HHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 2333222 33 4556666666666666666666666666666666 5544433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-15 Score=168.12 Aligned_cols=146 Identities=21% Similarity=0.155 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRH 101 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 101 (904)
|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc---CChHHHHHHH
Q psy17306 102 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL---GRLDEAKDLY 167 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~ 167 (904)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++... |++++|...+
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 66666666666666666666666666666666666666665555555555555555 4444444444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-14 Score=144.72 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=130.2
Q ss_pred hhCchhHhhc-C-ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHh
Q psy17306 544 NVEPDLTREG-G-SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ--------EALENYRHAVR 613 (904)
Q Consensus 544 ~~l~~~~~~~-~-~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~ 613 (904)
+..+.+.... + ++++++.++.+ +++.+|.+..+|..++.+....|.++ ++++.++++++
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k-----------~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHG-----------SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHH-----------HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 3334444443 4 67889999999 99999999999999999999998888 99999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCH------
Q psy17306 614 LKPDFIDGYINLAAALVAAGD-------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI------ 680 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~------ 680 (904)
.+|.+..+|..++.++...++ ++++++ .+.+++..+|++..+|+.+..++...|+.
T Consensus 196 ~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe-----------~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~ 264 (349)
T 3q7a_A 196 VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI-----------YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILP 264 (349)
T ss_dssp HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred hCCCCHHHHHHHHHHHHhccccccchHHHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccc
Confidence 999999999999999999987 567777 78888899999999999999999988764
Q ss_pred --------------HHHHHHHHHHHhcC------cCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 681 --------------WLAIHHFEKAVSLD------PNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 681 --------------~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
..-.+.....+... +.++.++.-|+.+|...|+.++|.++|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 265 AILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22233333332222 5789999999999999999999999998875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=155.19 Aligned_cols=206 Identities=16% Similarity=0.138 Sum_probs=160.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 20 QAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ-CRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 20 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
..|++.+|..+++++.+..+.. ++. .+++++|..+|.++ |.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4688999999999998876642 122 58899999998876 5688899999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh------hhHHHHHHHHHHHcCChHHHHHH
Q psy17306 99 YRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL------YCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 99 ~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 99999885432 4578999999999999999999999999874321 3456667777766 777777666
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
| .+|+.++.. ....+....++..+|.++..
T Consensus 138 ~----------------~~Al~~~~~----------------------------------~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 138 Y----------------QQAAAVFEN----------------------------------EERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp H----------------HHHHHHHHH----------------------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred H----------------HHHHHHHHh----------------------------------CCChhHHHHHHHHHHHHHHH
Confidence 6 333333321 00111236788999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 247 RGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+..|++++ ..|..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999986543 3478889999999999999999999999 99876
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=146.94 Aligned_cols=199 Identities=15% Similarity=0.005 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH-------HHHHHHhCcHHHHHHHHHHHHhcCCCCHH-----
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL-------GNVYKERGQLQEALENYRHAVRLKPDFID----- 111 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 111 (904)
.++..|.-+ ..+++..|...|.+++..+|..+.+|..+ +.++...++..+++..+++.+.+.|....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 344455555 58999999999999999999999999999 89999999999999999999998775433
Q ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHH
Q psy17306 112 ----------------GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGN 175 (904)
Q Consensus 112 ----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~ 175 (904)
+...++.++...|++++|.+.|..++...|++. ..+.+|.++...++|++|+..|
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l-------- 158 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQV-------- 158 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHH--------
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHH--------
Confidence 445588999999999999999999999999888 9999999999999999998888
Q ss_pred HHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc-Cch-hHHHHHHHHHHHHHhCCHHHH
Q psy17306 176 LLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ-NPL-LAEAYSNLGNVYKERGQLQEA 253 (904)
Q Consensus 176 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~lg~~~~~~g~~~~A 253 (904)
..+... +|. ...+++.+|.++..+|++++|
T Consensus 159 ------------------------------------------------~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA 190 (282)
T 4f3v_A 159 ------------------------------------------------KSAGKWPDKFLAGAAGVAHGVAAANLALFTEA 190 (282)
T ss_dssp ------------------------------------------------TTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------HHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence 233332 222 245899999999999999999
Q ss_pred HHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 254 LENYRHAVRLK--PD-FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 254 ~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+
T Consensus 191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999998654 55 5679999999999999999999999999999998
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=153.65 Aligned_cols=200 Identities=17% Similarity=0.093 Sum_probs=158.7
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcc
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVT 198 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 198 (904)
++..+|++++|+..|+++++++|++...+........... ++....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~~~------------------------------- 126 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKRWN------------------------------- 126 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHHHH-------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHHHH-------------------------------
Confidence 9999999999999999999998876433322222221111 111110
Q ss_pred hhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy17306 199 MKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278 (904)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 278 (904)
.......+.+..+...++.+. .|++++|+..++++++.+|++......++.++
T Consensus 127 -------------------------~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 127 -------------------------SIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp -------------------------HHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred -------------------------HHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 112233455556666666654 79999999999999999999988888888887
Q ss_pred HHc-CCHHHHHHHHHHHHhhCC
Q psy17306 279 VAA-GDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 279 ~~~-g~~~~A~~~~~~al~~~p 299 (904)
... +.+++|...|.++.+..+
T Consensus 180 ~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 180 AKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 776 778999999999876543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=135.58 Aligned_cols=126 Identities=15% Similarity=-0.029 Sum_probs=115.2
Q ss_pred HHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHh
Q psy17306 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 577 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+. .+.++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~a 78 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ-----------SYSYG 78 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH-----------HHHHH
Confidence 7888999999999999999999999999999999999999999999999999999999999999 77777
Q ss_pred hhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+..+|+++.+++++|.++..+|++++|+..|+++++++|+++........+....+.
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999887766655555544443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=127.85 Aligned_cols=118 Identities=23% Similarity=0.231 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.++++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~al~~~p 69 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA-----------DCNKAIEKDP 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCC
Confidence 45677888999999999999999999999999999999999999999999999999999 6666777788
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------cCcHHHHHHHHHHHHH
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD------PNFLDAYINLGNVLKE 710 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~ 710 (904)
+++.+++.+|.++..+|++++|+..|+++++++ |.+..++..++.+...
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999998 8888888888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=131.23 Aligned_cols=121 Identities=18% Similarity=0.124 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FID-----GYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
.+..+.++|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|+++|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3678899999999999999999999999999999 444 999999999999999999998888887
Q ss_pred hHHHhhhcCcchHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 652 CYLKAIETRPDFAVAW----SNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 652 ~~~~~l~~~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
.|.+.++++|+++.+| +++|.++..+|++++|+.+|+++++++|++..+.-.+..+-
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5777777799998888 99999999999999999999999999888766655554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=148.75 Aligned_cols=177 Identities=17% Similarity=0.060 Sum_probs=137.6
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.+..+|..+...|++++|+..|++ ++..+|+++.+++++|.++...|++++|+..|+++++++|+++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~-----------al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGR-----------AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 458899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
++++|.++..+|++++|+..|+++++.+|+ ++..+........ +..++...........|.++.+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~ 140 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-----------QRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELH 140 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------TTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999977777665553 2111111111111 12233344444445677777777
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKT 745 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 745 (904)
..++.++ .|++++|++.|+++++..|++..+...+.......
T Consensus 141 ~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 141 SYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 7777765 68888899999888888887766655555544443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-14 Score=146.67 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc------
Q psy17306 7 LGIGLLELAHREYQ------AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL------ 74 (904)
Q Consensus 7 ~~~~l~~~a~~~~~------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 74 (904)
.+..++..|..... .|++++|+..|.++ |.+|...|++++|+..|.+++.+.+.
T Consensus 9 eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 74 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45566777766443 57888888888876 67888999999999999999998653
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-----
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL----- 143 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 143 (904)
...++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.+|.. |++++|+.+|++++.+.|..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 3668999999999999999999999999988432 24678999999999 99999999999999986643
Q ss_pred -hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 144 -YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
..++..+|.++...|++++|+..| ++|+.+....
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~----------------~~al~~~~~~----------------------------- 188 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASL----------------QKEKSMYKEM----------------------------- 188 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHc-----------------------------
Confidence 456777788888888887777777 3333333210
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q psy17306 223 STLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-----GYINLAAALVAAGDMEQAVQ 289 (904)
Q Consensus 223 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~ 289 (904)
...+....++..+|.++...|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 189 -----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 189 -----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred -----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 0112234578889999999999999999999999 9886543 344555544 5666554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=143.70 Aligned_cols=160 Identities=17% Similarity=0.079 Sum_probs=125.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH----
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---- 619 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 619 (904)
...+......|+++.|.+.+.. .....+..+..+..+|.++...|++++|+..|++++++.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 76 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDY-----------TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD 76 (198)
T ss_dssp --------------CCCSGGGC-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred cchhhhhhhhhhccccCchhhC-----------CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch
Confidence 4455566667888888877776 5556667788999999999999999999999999999999887
Q ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 620 ------------DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 620 ------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
.++.++|.++..+|++++|+. .+.+++..+|+++.+++.+|.++..+|++++|+..|
T Consensus 77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAID-----------HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 899999999999999999999 666667778889999999999999999999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHhcchhHHH-HHHHHhh
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRAN-TLFYVSS 725 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~-~~~~~a~ 725 (904)
+++++++|+++.++..++.++...|+..++. ..|.+..
T Consensus 146 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 146 YKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887 4444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=126.07 Aligned_cols=134 Identities=27% Similarity=0.473 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 88 (904)
.+++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 89 RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
.|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999998886
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=126.78 Aligned_cols=134 Identities=36% Similarity=0.564 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~ 665 (904)
.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+. .+.+++...|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHHCCCchH
Confidence 4688999999999999999999999999999999999999999999999999999 55566667788889
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 730 (904)
+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|..+|++++...|+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-16 Score=161.82 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHH----HHhhCCCCHHHHHHHHHHHH------------hhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 22 GDYESAERHCMQ----LWRQETNNTGVLLLLSSIHF------------QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 22 g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
+.+++|+..+.. ++...|.. ++...|.... ..+++++|+..+++++..+|..+.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 467778887777 77778875 4444444332 56778888888888888889899999999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+...|++++|+..|++++.++|.+... .. +......|....++.++|.++...|++++|+.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~-------~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSF------------SN-------EEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCC------------CS-------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccC------------Ch-------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999887310 00 01111112223344444444444444444444
Q ss_pred HHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH
Q psy17306 166 LYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK 245 (904)
Q Consensus 166 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~ 245 (904)
.+ .+++..+|+++.+++.+|.++.
T Consensus 218 ~~--------------------------------------------------------~~al~~~p~~~~a~~~lg~~~~ 241 (336)
T 1p5q_A 218 SC--------------------------------------------------------NKALELDSNNEKGLSRRGEAHL 241 (336)
T ss_dssp HH--------------------------------------------------------HHHHHHCTTCHHHHHHHHHHHH
T ss_pred HH--------------------------------------------------------HHHHHhCCCcHHHHHHHHHHHH
Confidence 44 3444444444555566666666
Q ss_pred HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q psy17306 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA-VQAYVTALQY 297 (904)
Q Consensus 246 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 297 (904)
..|++++|+..|+++++++|++..++..++.++...|++++| ...|++++..
T Consensus 242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666777777666666666 3455555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=134.87 Aligned_cols=184 Identities=16% Similarity=0.087 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----cHHHHHHHHHH
Q psy17306 26 SAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG----QLQEALENYRH 101 (904)
Q Consensus 26 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 101 (904)
+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577788888764 67889999999999999999999999998875 568888999999888 6 89999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHH----cCChHHHHHHHHHHH
Q psy17306 102 AVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNP--DLYCVRSDLGNLLKA----LGRLDEAKDLYCVRS 171 (904)
Q Consensus 102 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~ 171 (904)
+.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| +++.+++.||.+|.. .+++++|+.+|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~---- 152 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF---- 152 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH----
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH----
Confidence 864 5678889999999887 8889999999999998887 357888888888887 66777777766
Q ss_pred hhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHh-C--
Q psy17306 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKER-G-- 248 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g-- 248 (904)
+++... +.++.+++.+|.+|... |
T Consensus 153 ----------------------------------------------------~~A~~~-~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 153 ----------------------------------------------------KGSSSL-SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp ----------------------------------------------------HHHHHT-SCTTHHHHHHHHHHHHCBTTT
T ss_pred ----------------------------------------------------HHHHHc-CCCHHHHHHHHHHHHcCCCCC
Confidence 455555 45566788888888754 2
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy17306 249 ---QLQEALENYRHAVRLKPDFIDGYINLA 275 (904)
Q Consensus 249 ---~~~~A~~~~~~al~~~p~~~~~~~~la 275 (904)
++++|+.+|+++.+.. +..+...++
T Consensus 180 ~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 7888888888888774 344444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=134.13 Aligned_cols=179 Identities=15% Similarity=0.011 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q psy17306 59 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG----DMEQAVQAYV 134 (904)
Q Consensus 59 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 134 (904)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4688899999875 67999999999999999999999999999875 578999999999998 7 9999999999
Q ss_pred HHHhcCCChhhHHHHHHHHHHH----cCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhc
Q psy17306 135 TALQYNPDLYCVRSDLGNLLKA----LGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYG 210 (904)
Q Consensus 135 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 210 (904)
++.+ +.++.+++.+|.+|.. .+++++|+.+|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~------------------------------------------- 112 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLL------------------------------------------- 112 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHH-------------------------------------------
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHH-------------------------------------------
Confidence 9965 5788999999999987 77787777777
Q ss_pred CCCcchHHHhhHHHHHhhcCc--hhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-
Q psy17306 211 GRKPTTLESAHFSTLAIKQNP--LLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVAA-G- 282 (904)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g- 282 (904)
+++....+ ..+.+++.+|.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|... |
T Consensus 113 -------------~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 113 -------------QDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp -------------HHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTT
T ss_pred -------------HHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCC
Confidence 57777777 568999999999999 88999999999999998 67788999999999865 3
Q ss_pred ----CHHHHHHHHHHHHhhCCCc
Q psy17306 283 ----DMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 283 ----~~~~A~~~~~~al~~~p~~ 301 (904)
++++|+.+|+++.+.....
T Consensus 179 ~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999886544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-14 Score=130.09 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
.+..++.+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+. .+.+++..+|++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG-----------DATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCccc
Confidence 467899999999999999999999999999999999999999999999999999999 666667778889
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHhcchhHHHHHHHHhhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV--LKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~~a~~ 726 (904)
+.+++.+|.++...|++++|+.+|+++++++|.++.++..++.+ +...|++++|+..+.++..
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999999999999999988555554 8899999999999877644
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-14 Score=124.31 Aligned_cols=117 Identities=24% Similarity=0.252 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
+.+.++.++|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|++++++.|+.. ...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR----ADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----hhhHH
Confidence 45778999999999999999999999999999999999999999999999999999998877777655311 11223
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 704 (904)
.+.++.++|.++..+|++++|+++|+++++.+|+ ++....+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 3578999999999999999999999999999875 5544443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=123.81 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhcC------CChhhHHHHHHHHH
Q psy17306 122 AAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLL 154 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 154 (904)
.+|++++|+..|+++++++ |++..++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555 55555555544443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-15 Score=161.01 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=133.8
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------------
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------------- 618 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------- 618 (904)
..+++++|+..|+. ++..+|..+.++..+|.++...|++++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~-----------~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~ 314 (457)
T 1kt0_A 246 TLKSFEKAKESWEM-----------DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASES 314 (457)
T ss_dssp EEEEEECCCCGGGS-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred hhhhcccCcchhhc-----------CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 56677788888877 788889999999999999999999999999999999999998
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 619 --IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 619 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
..+++++|.++..+|++++|+. .+.++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVE-----------CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999 777777888999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchhHHHH-HHHHhh
Q psy17306 697 FLDAYINLGNVLKEARIFDRANT-LFYVSS 725 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g~~~~A~~-~~~~a~ 725 (904)
+..++.+++.++..+|++++|.. .|+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 344443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=131.27 Aligned_cols=116 Identities=23% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
++..+..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+. .+.+++.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE-----------DAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHhC
Confidence 445566777777777777777777777777777777777777777777777777777777 555555566
Q ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q psy17306 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 707 (904)
|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++...+..
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 66677777777777777777777777777777777766655554443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=124.71 Aligned_cols=123 Identities=22% Similarity=0.283 Sum_probs=115.5
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
..|..+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+. .+.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~a~~~ 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK-----------DCEECIQL 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHH-----------HHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHh
Confidence 3577889999999999999999999999999999999999999999999999999999999 66666677
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
+|+++.+++.+|.++...|++++|+.+|+++++++|.+..++..++.++..+|+
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999999999999999999998874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-13 Score=133.12 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45678999999999999999999999996 34 7899999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFI----------------DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
...|++++|+..|++++...|.+. .++..+|.++...|++++|+..|+++++++|++..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999999999888766 89999999999999999999999999999998743
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=124.08 Aligned_cols=126 Identities=25% Similarity=0.262 Sum_probs=117.6
Q ss_pred HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh
Q psy17306 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE 658 (904)
Q Consensus 579 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 658 (904)
..+|..+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+. .+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~ 74 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ-----------DCERAIC 74 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHH-----------HHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999 6666667
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchh
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFD 715 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 715 (904)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 788889999999999999999999999999999999999999999999999998763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=127.13 Aligned_cols=134 Identities=13% Similarity=-0.000 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH-HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL-KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL---- 693 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---- 693 (904)
...+.++|..++..|+|++|+..|+++++++|+... .++...|.++.+|.++|.++..+|++++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999977777776665110 111223345669999999999999999999999999999
Q ss_pred ---CcCcHHHH----HHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 694 ---DPNFLDAY----INLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 694 ---~p~~~~a~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
+|+++.+| +++|.++..+|++++|+..|++++++.|++..+..-+..+..+..+-.+++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k~ 156 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL 156 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999988777777777766665555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=135.75 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=122.7
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 621 (904)
.++.+|..+...|++++|+..|++ ++ +| ++.+++++|.++...|++++|+..|+++++++|+++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~-----------a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 73 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSA-----------VQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-----------SS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH-----------Hc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 457889999999999999999999 64 33 67899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChh-----hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPS-----CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
++++|.++...|++++|+..|+++++..|+ .....+...|..+.+++++|.++...|++++|+..|+++++++|+
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999999988877776553 112222355667788999999999999999999999999999887
Q ss_pred c
Q psy17306 697 F 697 (904)
Q Consensus 697 ~ 697 (904)
+
T Consensus 154 ~ 154 (213)
T 1hh8_A 154 P 154 (213)
T ss_dssp G
T ss_pred c
Confidence 6
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=133.10 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=112.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH-H
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV-F 674 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~-~ 674 (904)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+. .+.+++..+|+++.++..+|.+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLL-----------AYRQALQLRGENAELYAALATVLY 89 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999 6666667778888899999999 7
Q ss_pred HhCCCH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 675 NAQGEI--WLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 675 ~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++...|++......+..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 788998 99999999999999999999999999999999999999999999998887766555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.2e-14 Score=133.21 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=119.3
Q ss_pred CchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy17306 546 EPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 625 (904)
.+..+...|++++|+..+++ ++..+|.++.+|+.+|.++...|++++|+..|+++++++|+++.++..+
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~-----------al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 84 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQD-----------KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84 (177)
T ss_dssp TTCCCC-----CCCCHHHHH-----------HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHH-----------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34446678999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHcCCH--HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 626 AAA-LVAAGDM--EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 626 g~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
|.+ +...|++ ++|+. .+.+++..+|+++.+++.+|.++...|++++|+..|+++++++|+++...
T Consensus 85 a~~l~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRA-----------MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHTTTCCCHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHhcCCcchHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999 8899999 99999 66677778899999999999999999999999999999999999886544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=142.04 Aligned_cols=170 Identities=8% Similarity=0.021 Sum_probs=140.6
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAE------AYSNLGNVYKERGQLQEALENYRHAVRLKPD 617 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 617 (904)
...+..+...|++++|+..+++ ++...+..+. .+..+|.++...|++++|+..|++++++.+.
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~-----------~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWN-----------ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-----------HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 4456678889999999999999 7766554433 3446899999999999999999999996443
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 618 F------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 618 ~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
. ..++.++|.+|..+|++++|+.+|+++++ .+.+.-...+..+.+++++|.+|..+|++++|+.++++++
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK----QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 34799999999999999999999999886 3332213445667799999999999999999999999999
Q ss_pred hcCcCc------HHHHHHHHHHHHHhcc-hhHHHHHHHHhhccc
Q psy17306 692 SLDPNF------LDAYINLGNVLKEARI-FDRANTLFYVSSYFM 728 (904)
Q Consensus 692 ~~~p~~------~~a~~~la~~~~~~g~-~~~A~~~~~~a~~~~ 728 (904)
++.+.. +.+++++|.++..+|+ +++|+++|++++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 985443 8899999999999995 699999999998743
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=138.70 Aligned_cols=170 Identities=7% Similarity=0.052 Sum_probs=140.0
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL------AEAYSNLGNVYKERGQLQEALENYRHAVRLKP 616 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 616 (904)
+...+..+...|++++|+..+.+ ++...+.. ...++.+|.++...|++++|+..|+++++..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWN-----------ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-----------HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999 66665543 24567899999999999999999999998754
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 617 DF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 617 ~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
.. ..+++++|.+|..+|++++|+.+|++++++ +.. ...++. .+.+++++|.+|..+|++++|+.+|++
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~----~~~-~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ----LEA-LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHH-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHh-cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 43 568999999999999999999988888852 211 111111 237899999999999999999999999
Q ss_pred HHhcCcC------cHHHHHHHHHHHHHhcchhHH-HHHHHHhhccc
Q psy17306 690 AVSLDPN------FLDAYINLGNVLKEARIFDRA-NTLFYVSSYFM 728 (904)
Q Consensus 690 al~~~p~------~~~a~~~la~~~~~~g~~~~A-~~~~~~a~~~~ 728 (904)
++++.+. .+.+++++|.+|..+|++++| ..+|++++...
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9998543 378999999999999999999 88899998654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-13 Score=125.42 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGN 84 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 84 (904)
...+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35677888889999999999999999999998888888888899999999999999999999999888888888889999
Q ss_pred HHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhc
Q psy17306 85 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAA--ALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 85 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~ 139 (904)
++...|++++|+.+|++++..+|.+..++..++. .+...|++++|+..+.++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999888888877744444 477888888888888877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=160.01 Aligned_cols=188 Identities=12% Similarity=0.070 Sum_probs=168.6
Q ss_pred hHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCC----------hhHHHHHHHHHhhhhhhHHHHHHH
Q psy17306 510 NKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGS----------IPITLTFECRKLDKSAHFSTLAIK 579 (904)
Q Consensus 510 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~l~~a~~~~~~al~ 579 (904)
+-..++++.+.+++..+|++..+| +..+.+....|+ +++++..+.+ ++.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW----------~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~-----------~l~ 101 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLW----------NCRREVLQHLETEKSPEESAALVKAELGFLES-----------CLR 101 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHH----------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH----------HHHHHHHHhcccccchhhhhhhHHHHHHHHHH-----------HHH
Confidence 334577888899999999999888 888888888777 7888888888 999
Q ss_pred hCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHh
Q psy17306 580 QNPLLAEAYSNLGNVYKERG--QLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKA 656 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 656 (904)
.+|.+..+|+.++.++...+ ++++|++.++++++.+|.+..+|...+.+....| .++++++ .+.++
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~-----------~~~~~ 170 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-----------FTDSL 170 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-----------HHHTT
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH-----------HHHHH
Confidence 99999999999999999999 7799999999999999999999999999999999 8999999 88888
Q ss_pred hhcCcchHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhH------
Q psy17306 657 IETRPDFAVAWSNLGCVFNAQ--------------GEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDR------ 716 (904)
Q Consensus 657 l~~~p~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~------ 716 (904)
++.+|.+..+|+.+|.++..+ +.+++|++++.+|+.++|++..+|+.++.++...|++++
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~ 250 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHV 250 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeee
Confidence 899999999999999999885 568999999999999999999999999999999998777
Q ss_pred ------HHHHHHHhhcccC
Q psy17306 717 ------ANTLFYVSSYFMI 729 (904)
Q Consensus 717 ------A~~~~~~a~~~~~ 729 (904)
|+.+|.+++...+
T Consensus 251 ~~~~~~~~~~f~~~i~~~~ 269 (567)
T 1dce_A 251 SREEACLSVCFSRPLTVGS 269 (567)
T ss_dssp ETTTTEEEEEEEEEECTTB
T ss_pred ccCCceEEEEeccceeccc
Confidence 5556666665543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=122.37 Aligned_cols=124 Identities=22% Similarity=0.064 Sum_probs=91.8
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
.+|.++..++.+|.++...|++++|+..|++++..+|+++.++.++|.++..+|++++|+. .+.+++..
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~al~~ 72 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA-----------DCRRALEL 72 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHh
Confidence 3566677788888888888888888888888888888888888888888888888888887 55556666
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC-----cHHHHHHHHHHHHHhcch
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-----FLDAYINLGNVLKEARIF 714 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~g~~ 714 (904)
+|+++.+++.+|.++...|++++|+..|+++++++|+ +..+...+..+.......
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888888888887776 566666666665544433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=127.22 Aligned_cols=124 Identities=16% Similarity=0.090 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL------------------KPDFIDGYINLAAALVAAGDMEQAVQAYVT 644 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 644 (904)
..+..+..+|..+...|++++|+..|++++.+ +|.+..++.++|.++..+|++++|+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~---- 84 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE---- 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH----
Confidence 34678999999999999999999999999998 55566777777777777777777777
Q ss_pred HHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH-HHHHHHHHHHHHhcchhHH
Q psy17306 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL-DAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 645 al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~A 717 (904)
.+.+++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++ .+...++.+....++..++
T Consensus 85 -------~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 85 -------TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp -------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred -------HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777777777777777777777776 5566677666666555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-13 Score=126.23 Aligned_cols=124 Identities=21% Similarity=0.198 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
++.++..++.+|.++...|++++|+. .|.+++..+|+++.+|+++|.+|...|++++|+.+|+++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAID-----------LYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999 6777777889999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhh--HHHHHHHHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDED--IDVILERCEAKTEELN 749 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~ 749 (904)
|+++.+++++|.++..+|++++|+.+|++++...|++.. +...+..+..++++..
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877 5555555565555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=117.31 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=75.4
Q ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------
Q psy17306 3 DIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL------- 75 (904)
Q Consensus 3 ~~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------- 75 (904)
..++.+.++..+|..++..|+|++|+..|+++++.+|+++.++..+|.+|...|++++|+..++++++++|++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 3456677777777777777777777777777777777777777777777777777777777777777776654
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC
Q psy17306 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108 (904)
Q Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 108 (904)
+.++..+|.++..+|++++|+.+|++++...|+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 245666666666666666666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=116.40 Aligned_cols=121 Identities=40% Similarity=0.642 Sum_probs=110.2
Q ss_pred CCch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhc
Q psy17306 581 NPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIET 659 (904)
Q Consensus 581 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 659 (904)
+|.. +.+++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+. .+.+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHH-----------HHHHHHHh
Confidence 4544 78999999999999999999999999999999999999999999999999999999 56666667
Q ss_pred CcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 660 RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 78888999999999999999999999999999999999999999999988765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=119.87 Aligned_cols=120 Identities=28% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy17306 39 TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118 (904)
Q Consensus 39 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 118 (904)
|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 119 ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 119 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
++...|++++|+..++++++.+|.+..++..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666665544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=146.87 Aligned_cols=167 Identities=9% Similarity=0.052 Sum_probs=156.4
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCcHHHHHH
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ----------LQEALENYRHAVRLKPDFIDGYIN 624 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~ 624 (904)
..++|+..+.+ ++..+|++..+|+.++.++...|+ +++|++.++++++.+|.+..+|+.
T Consensus 44 ~~eeal~~~~~-----------~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQ-----------ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCHHHHHHHHH-----------HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34678999999 999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcCcCcHHHH
Q psy17306 625 LAAALVAAG--DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVSLDPNFLDAY 701 (904)
Q Consensus 625 lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~ 701 (904)
.++++...| ++++|++ .+.++++.+|.+..+|...|++....| .++++++++.++++.+|.+..+|
T Consensus 113 R~w~l~~l~~~~~~~el~-----------~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELE-----------LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HHHHHHTCSSCCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred HHHHHHHcccccHHHHHH-----------HHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 999999999 7799999 777888889999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHh--------------cchhHHHHHHHHhhcccCChhhHHHHHHHHHH
Q psy17306 702 INLGNVLKEA--------------RIFDRANTLFYVSSYFMITDEDIDVILERCEA 743 (904)
Q Consensus 702 ~~la~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 743 (904)
.+++.++... +.+++|++++.+++...|++..+-..++....
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 9999999886 77899999999999999999988888776664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-14 Score=135.71 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+......+......|.+++|.+.+.......+..+..+..+|.++...|++++|+..|+++++.. |.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------~~~~ 72 (198)
T 2fbn_A 4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-----------IHTE 72 (198)
T ss_dssp ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------TTCT
T ss_pred cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------hccc
Confidence 44455666777788899999999988877778888999999999999999999999666665544 3333
Q ss_pred ----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 665 ----------------VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 665 ----------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.++.++|.++..+|++++|+.+|+++++++|.++.+++++|.++..+|++++|+.+|++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHH
Q psy17306 729 ITDEDIDVILERCEAKTEELNKKF 752 (904)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~~~~~~ 752 (904)
|++..+...++.+...+++..++.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887766553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.6e-13 Score=117.06 Aligned_cols=119 Identities=23% Similarity=0.315 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 120 (904)
++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|.++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC
Q psy17306 121 VAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159 (904)
Q Consensus 121 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 159 (904)
...|++++|+..++++++.+|++..++..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555554444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=118.67 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 587 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+. .+.++++++|+++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~-----------~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-----------ALNHARMLDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHH
Confidence 456677777777777777777777777777777777777777777777777777 555556666667777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
++.+|.++...|++++|+..|+++++++|+++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777777777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=119.53 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=110.7
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 613 RLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 613 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..+|.++..+..+|.++...|++++|+. .+.+++..+|+++.+++++|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~-----------~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAA-----------CYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHH-----------HHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999 66677778889999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCC-----hhhHHHHHHHHHHHHHH
Q psy17306 693 LDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMIT-----DEDIDVILERCEAKTEE 747 (904)
Q Consensus 693 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~ 747 (904)
++|+++.+++++|.++...|++++|+.+|++++...|+ +..+...+..+..+...
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887 67777777777665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-12 Score=125.32 Aligned_cols=223 Identities=9% Similarity=-0.010 Sum_probs=157.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhhcCHH---------H------------HHHHHHHHHhcC
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNN-TGVLLLLSSIHFQCRKLD---------K------------SAHFSTLAIKQN 72 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~---------~------------A~~~~~~al~~~ 72 (904)
.+..|-.|+|..++.... +..|.+ ......+.++|..+|++. . |+..+++.+...
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~~a~~~l~~l~~~~ 96 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDK 96 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTTTS
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 455677888888877433 233332 234444555666666553 1 333444444444
Q ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----hhhH
Q psy17306 73 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD----LYCV 146 (904)
Q Consensus 73 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 146 (904)
+....++..+|.++...|++++|+..+.+++..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 44556667888888888888888888888888776 67778888888888888888888888888887773 2233
Q ss_pred HHHH--HHHHHHcC--ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhH
Q psy17306 147 RSDL--GNLLKALG--RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF 222 (904)
Q Consensus 147 ~~~l--a~~~~~~~--~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 222 (904)
...+ +.+....| ++.+|..+|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f------------------------------------------------------- 201 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYY------------------------------------------------------- 201 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHH-------------------------------------------------------
Confidence 3333 33354445 666666665
Q ss_pred HHHHhhcCch--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 223 STLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRL----------KPDFIDGYINLAAALVAAGDMEQAVQA 290 (904)
Q Consensus 223 ~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (904)
+++....|+ .+..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++
T Consensus 202 -~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 202 -EELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp -HHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred -HHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence 566666775 3334444 899999999999999988876 48899999999999999998 89999
Q ss_pred HHHHHhhCCCc
Q psy17306 291 YVTALQYNPLL 301 (904)
Q Consensus 291 ~~~al~~~p~~ 301 (904)
++++.+..|++
T Consensus 276 ~~qL~~~~P~h 286 (310)
T 3mv2_B 276 TNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhCCCC
Confidence 99999999999
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-12 Score=131.33 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=139.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNT------GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL--- 75 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 75 (904)
+.....+...+..++..|++++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34556778899999999999999999999999887654 346678899999999999999999999864432
Q ss_pred ---HHHHHHHHHHHHHhCcHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q psy17306 76 ---AEAYSNLGNVYKERGQLQEALENYRHAV---RLKPDFI----DGYINLAAALVAAGDMEQAVQAYVTALQYNPD--- 142 (904)
Q Consensus 76 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 142 (904)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|..+|++++|+.++++++++.++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 6689999999999999999999999999 4456543 68999999999999999999999999987532
Q ss_pred ---hhhHHHHHHHHHHHcCChHHH-HHHH
Q psy17306 143 ---LYCVRSDLGNLLKALGRLDEA-KDLY 167 (904)
Q Consensus 143 ---~~~~~~~la~~~~~~~~~~~A-~~~~ 167 (904)
...++..+|.++...|++++| ...+
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 267889999999999999999 6666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-12 Score=112.47 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+. .+.+++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE-----------DGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHH-----------HHHHHHHhCccc
Confidence 467889999999999999999999999999999999999999999999999999999 666666778888
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+.++..+|.++...|++++|+..|+++++.+|+++.++..++.+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999888775
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-10 Score=127.69 Aligned_cols=127 Identities=9% Similarity=-0.105 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
..+|...+....+.++.+.|...|.++ ...+.....|...|.+-...+ +.+.|...|+ .+++..|+.
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife-----------~al~~~~~~ 353 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS-----------SGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH-----------HHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH-----------HHHHHCCCC
Confidence 467777888887888899999999999 443335567777777766666 6999999554 444555667
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYF 727 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 727 (904)
+..|...+......|+.+.|...|+++ +.....|......-...|+.+.+..+++++...
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777888888899999999999998 346788888888888889999999999888753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-13 Score=115.98 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..++.+|.++...|++++|+. .+.++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAAL-----------AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 357899999999999999999 777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
+++++|.++...|++++|+..|++++...|++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999887643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=123.09 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=111.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH-------HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL-------KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKA 690 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 690 (904)
.+..+..+|..++..|++++|+..|.+++...+.... .....+|..+.+|+++|.+|..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4678899999999999999999988888875221100 011226778899999999999999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh-hHHHHHHHHHHHHHHH
Q psy17306 691 VSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDE-DIDVILERCEAKTEEL 748 (904)
Q Consensus 691 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~ 748 (904)
++++|+++.+++.+|.++..+|++++|+..|++++...|++. .+...+..+..++.+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887 7788888877766544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-14 Score=153.15 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=130.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---------------AEAYSNLGNV 85 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 85 (904)
.+++++|+..++.++...|..+..+..+|.+++..|+|++|+..|+++++.+|.+ ..+++++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777887888888888899999999999999999999999999988887 6899999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
+..+|++++|+.+|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HH
Q psy17306 166 LY 167 (904)
Q Consensus 166 ~~ 167 (904)
..
T Consensus 407 ~~ 408 (457)
T 1kt0_A 407 RI 408 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=111.68 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
+.+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666677777777777666666666666666677777
Q ss_pred HcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHc
Q psy17306 122 AAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKAL 157 (904)
Q Consensus 122 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 157 (904)
..|++++|+..+++++..+|++..++..++.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 777777777777777666666666666666666544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=131.42 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc------
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTG------VLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL------ 74 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 74 (904)
....+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3445667788999999999999999999998777655 3335889999999999999999999986433
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh----
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL---- 143 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 143 (904)
...++..+|.+|...|++++|+.+|+++++. .+....++.++|.+|..+|++++|+.++++++++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 1447999999999999999999999999953 22335689999999999999999999999999875433
Q ss_pred --hhHHHHHHHHHHHcCC-hHHHHHHH
Q psy17306 144 --YCVRSDLGNLLKALGR-LDEAKDLY 167 (904)
Q Consensus 144 --~~~~~~la~~~~~~~~-~~~A~~~~ 167 (904)
..++..+|.++...|+ +++|+..+
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 6789999999999995 69999998
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=152.51 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
..+.++..+|.++...|++++|++.|+++++++|+++.++.++|.++..+|++++|+. .+.++++.+|+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~l~p~ 72 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG-----------DATRAIELDKK 72 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCC
Confidence 4466788899999999999999999999999999999999999999999999999999 77777788899
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH--HHHhcchhHHHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV--LKEARIFDRANTLFY 722 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~g~~~~A~~~~~ 722 (904)
++.+++++|.+|..+|++++|+..|+++++++|+++.++.+++.+ +..+|++++|++.++
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999 899999999999999
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=124.80 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=131.6
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYIN 624 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~ 624 (904)
...|++++|...++. .....+..+.++..+|.++...|++++|+..|++++++ .|....++.+
T Consensus 3 ~~~g~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 3 FEAHDYALAERQAQA-----------LLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQ 71 (203)
T ss_dssp ----CHHHHHHHHHH-----------HHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH-----------hcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 457899999986655 33333377899999999999999999999999999994 4556779999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC------c
Q psy17306 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN------F 697 (904)
Q Consensus 625 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~ 697 (904)
+|.++...|++++|+..++++++. +. ....+| ..+.++.++|.++...|++++|+.++++++.+.+. .
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~----~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEEREL----LA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----HH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----HH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 999999999999999988888863 22 112123 45778999999999999999999999999987321 2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 698 LDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 698 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
..++.++|.++...|++++|..+|++++....
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999988654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=113.61 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=108.1
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|..+..++.+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..++++++..|+. ....+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~ 76 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----REDYR 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----TTCHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc----chhHH
Confidence 34578899999999999999999999999999999999999999999999999999999666665533220 00001
Q ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcch
Q psy17306 662 DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIF 714 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 714 (904)
..+.+++.+|.++...|++++|+.+|+++++.+| ++.+...++.+....++.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 1178999999999999999999999999999999 688999999888776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=117.15 Aligned_cols=120 Identities=23% Similarity=0.138 Sum_probs=108.7
Q ss_pred HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHH
Q psy17306 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLK 655 (904)
Q Consensus 579 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 655 (904)
..+|..+..++.+|.++...|++++|+..|+++++.+|++ ..++.++|.++...|++++|+. .+.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~ 90 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET-----------EASK 90 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHH-----------HHHH
Confidence 3567788999999999999999999999999999999997 8899999999999999999999 6666
Q ss_pred hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 656 AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 656 ~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
++..+|+++.+++.+|.++...|++++|+.+|+++++++|++..++..++.+..
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 667788889999999999999999999999999999999999999988887754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-12 Score=109.01 Aligned_cols=111 Identities=28% Similarity=0.347 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 43 GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 43 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444444444455555555555555544444444555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCChhhHHHHHHHH
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNL 153 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 153 (904)
.|++++|+..++++++.+|+++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555544444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=142.30 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=91.7
Q ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 580 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI-----------------DGYINLAAALVAAGDMEQAVQAY 642 (904)
Q Consensus 580 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~lg~~~~~~g~~~~A~~~~ 642 (904)
..+..+..+..+|.++...|++++|+..|++++.+.|++. .+++++|.++..+|++++|+.
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~-- 251 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG-- 251 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--
Confidence 3455678899999999999999999999999999999877 388999999999999999999
Q ss_pred HHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHH-HHHhcchhHHHHHH
Q psy17306 643 VTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV-LKEARIFDRANTLF 721 (904)
Q Consensus 643 ~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~~~A~~~~ 721 (904)
.+.++++.+|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+ ....+..+++...|
T Consensus 252 ---------~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 252 ---------HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp ---------HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred ---------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777888899999999999999999999999999999999999999999988 45566788888899
Q ss_pred HHhhcccCChh
Q psy17306 722 YVSSYFMITDE 732 (904)
Q Consensus 722 ~~a~~~~~~~~ 732 (904)
++++...|++.
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 98888776543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.5e-12 Score=111.90 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcc
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI---DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPD 662 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~ 662 (904)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+. .+.+++..+|+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~~~~~~p~ 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEA-----------QFRDLVSRYPT 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHH-----------HHHHHHHHCCC
Confidence 3567888888899999999999999999888887 788889999999999999998 55555556666
Q ss_pred h---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 663 F---AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 663 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
+ +.+++.+|.++..+|++++|+..|++++..+|+++.+...+..+-...+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 6 7888899999999999999999999999988888877666655544333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-11 Score=120.60 Aligned_cols=186 Identities=15% Similarity=0.017 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 27 AERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 27 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
|+..+++.+...+.+..++..+|.++...|++++|++++.+.+..+| .+..++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67777777777666777788999999999999999999999999987 8899999999999999999999999999999
Q ss_pred cCCC------CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHH
Q psy17306 105 LKPD------FIDGYINLAAALVAAG--DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176 (904)
Q Consensus 105 ~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~ 176 (904)
.+|+ .......-|++....| ++.+|...|+++....|+.......+. ++..+|++++|...+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L--------- 234 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIV--------- 234 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHH---------
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHH---------
Confidence 9983 2333333355566667 999999999999998887322222333 888899999998887
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhc----------CchhHHHHHHHHHHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQ----------NPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~lg~~~~~ 246 (904)
+.+.+. +|+++.++.+++.+...
T Consensus 235 -----------------------------------------------~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 235 -----------------------------------------------ELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp -----------------------------------------------HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 233333 48899999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCHHHH
Q psy17306 247 RGQLQEALENYRHAVRLKPDFIDGY 271 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~~~~ 271 (904)
.|+ +|.++++++.+.+|+++.+.
T Consensus 268 lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred hCh--HHHHHHHHHHHhCCCChHHH
Confidence 998 89999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=9.5e-13 Score=116.48 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=84.3
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHH
Q psy17306 596 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGC 672 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~ 672 (904)
.+.+.+++|+..|+++++++|+++.+|+++|.++...++++ +|++.+++|+. .|+++++++|+++.+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~----~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT----KFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH----HHHHHHHhCcCcHHHHHHHHH
Confidence 35567999999999999999999999999999999988764 34444445554 889999999999999999999
Q ss_pred HHHhCC-----------CHHHHHHHHHHHHhcCcCcH
Q psy17306 673 VFNAQG-----------EIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 673 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 698 (904)
+|..+| ++++|+.+|++|++++|++.
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 999885 78888888888888888875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=9e-12 Score=113.57 Aligned_cols=119 Identities=15% Similarity=0.106 Sum_probs=104.5
Q ss_pred hCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 113 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 113 (904)
..|.+...++.+|.+++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456678888899999999999999999999999988887 78889999999999999999999999999999989999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 114 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
..+|.++...|++++|+..|+++++++|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999988888877776653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-12 Score=133.93 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVR----------------LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 647 (904)
.+..+..+|.++...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~------- 294 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD------- 294 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH-------
Confidence 356799999999999999999999999999 566666777777777777777777777
Q ss_pred hChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHH
Q psy17306 648 YNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720 (904)
Q Consensus 648 ~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 720 (904)
.+.++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 295 ----~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 295 ----SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666777777777777777777777777777777777777777777777777777777766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.5e-12 Score=110.34 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc---HHHHHHHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNT---GVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL---AEAYSNLG 83 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la 83 (904)
+++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666666666666666666666666666655 566666666666666666666666666666655 55566666
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
.++...|++++|+..|++++...|+++.+......+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 666666666666666666666666655544444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.9e-12 Score=120.77 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=123.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHhCc
Q psy17306 18 EYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK------QNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 18 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~ 91 (904)
++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999966655543336788999999999999999999999999998 456678899999999999999
Q ss_pred HHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--h----hhHHHHHHHHHHHcC
Q psy17306 92 LQEALENYRHAVRL---KPD----FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD--L----YCVRSDLGNLLKALG 158 (904)
Q Consensus 92 ~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~ 158 (904)
+++|+..+++++.+ .++ ...++..+|.++...|++++|+..+++++.+.+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999998 442 3567899999999999999999999999976322 1 234678888888888
Q ss_pred ChHHHHHHH
Q psy17306 159 RLDEAKDLY 167 (904)
Q Consensus 159 ~~~~A~~~~ 167 (904)
++++|...+
T Consensus 162 ~~~~A~~~~ 170 (203)
T 3gw4_A 162 NLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888888887
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=110.61 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 581 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 581 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+. .+.++++.+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~a~~~~ 70 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD-----------CYNYVINVI 70 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHTS
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHhC
Confidence 355555666666666666666666666666666666666666666666666666666666 444444445
Q ss_pred cc--hHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCcCc
Q psy17306 661 PD--FAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 661 p~--~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~ 697 (904)
|+ ++.++..+|.++... |++++|++++++++..+|.+
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 55 556666666666666 66666666666666665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=114.68 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=75.4
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCcHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL----------QEALENYRHAVRLKPDFID 620 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~ 620 (904)
.+.+.+++|+..+++ +++.+|+++.+|+++|.++...+++ ++|+..|+++++++|++..
T Consensus 13 ~r~~~feeA~~~~~~-----------Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAEN-----------TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence 355678888888888 9999999999999999999998875 5999999999999999999
Q ss_pred HHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhC
Q psy17306 621 GYINLAAALVAAG-----------DMEQAVQAYVTALQYN 649 (904)
Q Consensus 621 a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~ 649 (904)
+|+++|.+|..+| ++++|+++|+++++++
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9999999999885 6777777444444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-13 Score=145.27 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=121.2
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (904)
..+..+|..+...|++++|+..|++ +++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~-----------Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQ-----------AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH-----------HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence 3458999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH--HHhCCCHHHHHHHHH----------
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV--FNAQGEIWLAIHHFE---------- 688 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~--~~~~g~~~~A~~~~~---------- 688 (904)
+++++|.+|..+|++++|++ .+.++++.+|+++.++..++.+ +...|++++|++.++
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~-----------~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALR-----------DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred HHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 99999999999999999999 6666667788888899999998 889999999999999
Q ss_pred -HHHhcCcCcH
Q psy17306 689 -KAVSLDPNFL 698 (904)
Q Consensus 689 -~al~~~p~~~ 698 (904)
+++.++|+..
T Consensus 145 ~~al~~~~~~~ 155 (477)
T 1wao_1 145 IESMTIEDEYS 155 (477)
T ss_dssp TSSCCCCTTCC
T ss_pred hhhcccccccc
Confidence 8888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=134.46 Aligned_cols=138 Identities=10% Similarity=-0.033 Sum_probs=91.0
Q ss_pred HHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchH-----------------HHHHHHHHHHHHcCCHH
Q psy17306 540 KYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLA-----------------EAYSNLGNVYKERGQLQ 602 (904)
Q Consensus 540 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~ 602 (904)
+..+..+|..++..|++++|+..|++ ++...|.+. .+++++|.++..+|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~-----------Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEM-----------AIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHH-----------HHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-----------HHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 45678999999999999999999999 888888876 48999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHH-HhCCCHH
Q psy17306 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF-NAQGEIW 681 (904)
Q Consensus 603 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~-~~~g~~~ 681 (904)
+|+..|+++++++|+++.+++++|.+|..+|++++|+. .|.++++++|+++.++..++.+. ...+..+
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~-----------~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD-----------DFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-----------HHHHTTC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 77788888999999999999984 4567788
Q ss_pred HHHHHHHHHHhcCcCcHH
Q psy17306 682 LAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 682 ~A~~~~~~al~~~p~~~~ 699 (904)
++...|.+++...|+++.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 999999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-12 Score=108.23 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCC--CHHHHHH
Q psy17306 38 ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD--FIDGYIN 115 (904)
Q Consensus 38 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 115 (904)
+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57888888999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCChh
Q psy17306 116 LAAALVAA-GDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 116 la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 144 (904)
+|.++... |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999888753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-11 Score=108.32 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-------HHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-------AEA 78 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 78 (904)
..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456667777777777777777777777777777777777777777777777777777777777766655 666
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 122 (904)
++.+|.++...|++++|+.+|++++...| ++..+..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 67777777777777777777777777666 45555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=111.95 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHH
Q psy17306 597 ERGQLQEALENYRHAVRL---KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCV 673 (904)
Q Consensus 597 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~ 673 (904)
..|++++|+..|++++++ +|+++.+++++|.++..+|++++|+. .+.++++.+|+++.+++++|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEA-----------VLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCchHHHHHHHHH
Confidence 357788888888888888 57778888888888888888888888 6666667778888888888888
Q ss_pred HHhCCCHHHHHHHHHHHHhcCcCcHHHHH
Q psy17306 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYI 702 (904)
Q Consensus 674 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 702 (904)
+...|++++|+..|++++..+|+++.+..
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88888888888888888888888876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-11 Score=113.19 Aligned_cols=141 Identities=21% Similarity=0.210 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 657 (904)
.+.++..+|.++...|++++|+..|++++++.+.. ..++.++|.++...|++++|+..++++++..+. .
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~ 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----L 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----h
Confidence 46789999999999999999999999999985543 258999999999999999999999888864322 1
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP------NFLDAYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
...+..+.++.++|.++...|++++|+.++++++++.+ ..+.++..+|.++...|++++|..++++++....
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 22233467899999999999999999999999998832 3367899999999999999999999999987543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=108.84 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=67.9
Q ss_pred hcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 55 CRKLDKSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131 (904)
Q Consensus 55 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 131 (904)
.|++++|+..|+++++. +|+++.+++.+|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777777 577777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCChhhHHH
Q psy17306 132 AYVTALQYNPDLYCVRS 148 (904)
Q Consensus 132 ~~~~al~~~p~~~~~~~ 148 (904)
.+++++...|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777777665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=128.44 Aligned_cols=142 Identities=13% Similarity=0.195 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
.+..+..+|..++..|++++|+..|+++++..|..+ +..........+|.+..++.++|.++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554322210 00112222236777888888888888
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 166 (904)
..+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.+++...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-08 Score=110.79 Aligned_cols=124 Identities=8% Similarity=-0.003 Sum_probs=95.0
Q ss_pred HHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHH
Q psy17306 542 VYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG-QLQEALENYRHAVRLKPDFID 620 (904)
Q Consensus 542 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 620 (904)
+|...+......+..+.|...|.+ + ...+.....|...|.+....+ +.+.|...|+.+++..|+.+.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~-----------A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~ 355 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIE-----------L-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL 355 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH-----------H-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-----------h-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence 345555555566778999999998 7 333334567776677666655 699999999999999999998
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
.+...+......|+.+.|...|+ ++ +.....|......-...|+.+.+...+++++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~e-----------r~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFK-----------RL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-----------HS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-----------HH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888899999999999544 43 22456777777777778999999998998875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=126.97 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNT-----------------GVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 71 (904)
.+.+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|.+++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999888642 36889999999999999999999999886
Q ss_pred Ccc------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 72 NPL------LAEAYSNLGNVYKERGQLQEALENYRHAVRLK------PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 72 ~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
.+. ...+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|+..+++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 443 23456678888889999999999999998763 334678899999999999999999999999865
Q ss_pred ------CCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCC
Q psy17306 140 ------NPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRK 213 (904)
Q Consensus 140 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (904)
.+....++..++.+|...|++++|...+ .+|+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~----------------~~al~~~~---------------------- 206 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL----------------TAARTAAN---------------------- 206 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH----------------HHHHHHHH----------------------
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH----------------HHHHHHhh----------------------
Confidence 2334567888888888888888888777 33332221
Q ss_pred cchHHHhhHHHHHhhcCc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 214 PTTLESAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.+...+ .....+..+|.++...|+|.+|..+|.+++..
T Consensus 207 ------------~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 207 ------------SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp ------------HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ------------cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111111 12567778899999999999999999988864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-11 Score=110.80 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=117.8
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF 618 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (904)
.+.++..+|.++...|++++|+..+++.++.... ....+....++..+|.++...|++++|+..|++++++.+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3567799999999999999999999993332210 00011223689999999999999999999999999875442
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q psy17306 619 ------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692 (904)
Q Consensus 619 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 692 (904)
..++.++|.++...|++++|+..++++++..+ .....+..+.++..+|.++...|++++|+.+++++++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-----ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56899999999999999999999998886422 1223345578899999999999999999999999998
Q ss_pred cCcC
Q psy17306 693 LDPN 696 (904)
Q Consensus 693 ~~p~ 696 (904)
+...
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-10 Score=124.50 Aligned_cols=209 Identities=10% Similarity=0.059 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 42 TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-----------------AEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 42 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
|.+....|..+...|+|++|++.|.++++..|.. ..++..+|.+|...|++++|+..+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567778889999999999999999999987653 24688999999999999999999999998
Q ss_pred cCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CChhhHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy17306 105 LKPDFI------DGYINLAAALVAAGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172 (904)
Q Consensus 105 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (904)
..+... .+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|...+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l----- 158 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI----- 158 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH-----
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH-----
Confidence 755432 345667888888999999999999998763 233567788888888888888888877
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
.++..... .....+....++..+|.+|...|++++
T Consensus 159 -----------~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T 4b4t_Q 159 -----------NDLLREFK----------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAK 193 (434)
T ss_dssp -----------HHHHHHHT----------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------HHHHHHHH----------------------------------hcccchhHHHHHHHHHHHHHHhCcHHH
Confidence 22222221 112345668899999999999999999
Q ss_pred HHHHHHHHHhhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy17306 253 ALENYRHAVRLK---PDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPL 300 (904)
Q Consensus 253 A~~~~~~al~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 300 (904)
|...+++++... +.. ...+..+|.++...|++.+|..+|.+++...+.
T Consensus 194 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 194 SKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 999999998763 222 346778899999999999999999999876543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-10 Score=123.96 Aligned_cols=137 Identities=14% Similarity=0.056 Sum_probs=117.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-h
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRL--------KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-E 658 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~ 658 (904)
....+..+..+|+|++|+..|++++++ +|+...++.+||.+|..+|+|++|+.+++++|+ .+.+.+ .
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----i~~~~lG~ 387 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD----GYMKLYHH 387 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHSCT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHcCC
Confidence 334555677899999999999999987 344456899999999999999999999999998 444443 3
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.+|+.+..+++||.+|..+|++++|+..|++|+++ +|.......+++.++.++|.+++|...|+++++..
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999998 45556677899999999999999999999987644
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.4e-11 Score=101.20 Aligned_cols=96 Identities=17% Similarity=0.137 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
++.++..+|.++...|++++|+. .+.+++..+|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVH-----------CYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999 6667777888899999999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 698 ------LDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 698 ------~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
..+++.+|.++...|++++|+..|++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 999999999999999999998887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.11 E-value=6e-10 Score=96.14 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH
Q psy17306 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682 (904)
Q Consensus 603 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~ 682 (904)
+|+..|+++++.+|+++.+++++|.++...|++++|+. .+.+++..+|+++.+|+.+|.++...|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALP-----------HLRAALDFDPTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHH
Confidence 35566666666666666666666666666666666666 4444445555556666666666666666666
Q ss_pred HHHHHHHHHhcCcC
Q psy17306 683 AIHHFEKAVSLDPN 696 (904)
Q Consensus 683 A~~~~~~al~~~p~ 696 (904)
|+..|+++++++|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 66666666666553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=89.89 Aligned_cols=85 Identities=38% Similarity=0.579 Sum_probs=75.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC
Q psy17306 617 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696 (904)
Q Consensus 617 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 696 (904)
.++.+++.+|.++...|++++|+. .+.+++..+|+++.+++.+|.++...|++++|+.+|+++++++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~-----------~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 457789999999999999999999 666666778888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q psy17306 697 FLDAYINLGNVLKEAR 712 (904)
Q Consensus 697 ~~~a~~~la~~~~~~g 712 (904)
++.++.++|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=99.48 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+. .+.+++..+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ-----------MCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-----------HHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999 666666777777
Q ss_pred ------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 664 ------AVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 664 ------~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
+.+++.+|.++...|+++.|+..+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88999999999999988888776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=94.51 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 60 KSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 60 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555555555555666666666666666666666666666655555666666666666666666666666555
Q ss_pred CCC
Q psy17306 140 NPD 142 (904)
Q Consensus 140 ~p~ 142 (904)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=87.70 Aligned_cols=86 Identities=40% Similarity=0.599 Sum_probs=79.6
Q ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 582 PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 582 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+. .+.+++..+|
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~a~~~~p 74 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-----------YYQKALELDP 74 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH-----------HHHHHHhcCC
Confidence 45688999999999999999999999999999999999999999999999999999999 6667777889
Q ss_pred chHHHHHHHHHHHHhCC
Q psy17306 662 DFAVAWSNLGCVFNAQG 678 (904)
Q Consensus 662 ~~~~a~~~lg~~~~~~g 678 (904)
+++.++.++|.++...|
T Consensus 75 ~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999999998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.9e-09 Score=112.50 Aligned_cols=144 Identities=13% Similarity=-0.041 Sum_probs=118.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------- 614 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 614 (904)
....+..+..+|+|++|+.++++.+++....+ -..+|....++.+||.+|..+|+|++|+.++++++++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l---g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVF---ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB---CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455567789999999999999555433221 1235667789999999999999999999999999987
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+|+....+++||.+|..+|++++|+..|+++++ .+.+.+ ..+|........++.++..+|.+++|...|.++.+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~----i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA----ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999999998 444443 356888888999999999999999999999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=90.27 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=69.2
Q ss_pred cCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 659 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.+|...|++++|+..|++++...+...+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 47899999999999999999999999999999999999999999999999999999999999999998876544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-09 Score=87.69 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=75.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 614 LKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
.+|+++.+++.+|.++...|++++|+. .+.++++.+|+++.+|+.+|.+|...|++++|+..|++++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALA-----------LFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 479999999999999999999999999 777777888999999999999999999999999999999999
Q ss_pred CcC--cHHHHHHHHHHHHHhcch
Q psy17306 694 DPN--FLDAYINLGNVLKEARIF 714 (904)
Q Consensus 694 ~p~--~~~a~~~la~~~~~~g~~ 714 (904)
.|. +..+...+..++...+..
T Consensus 71 ~~~~~~~~~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 71 AREEGTQKDLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTT
T ss_pred hhcCCchhHHHHHHHHHHHcccc
Confidence 765 455666666666655543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=88.26 Aligned_cols=119 Identities=22% Similarity=0.155 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH---
Q psy17306 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA--- 631 (904)
Q Consensus 555 ~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--- 631 (904)
++++|+.+|++ +.+.....+ . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|..
T Consensus 10 d~~~A~~~~~~-----------aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 10 DLKKAIQYYVK-----------ACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHH-----------HHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHH-----------HHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence 45556666666 555543222 2 666666666666666666666665 456666666666666
Q ss_pred -cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHHHHHHH
Q psy17306 632 -AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDAYINLG 705 (904)
Q Consensus 632 -~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 705 (904)
.+++++|+.+|+++ .+. .++.++++||.+|.. .+++++|+.+|++|.+.. ++.+..+|+
T Consensus 73 ~~~d~~~A~~~~~~A-----------a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 73 VKKDLRKAAQYYSKA-----------CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp SCCCHHHHHHHHHHH-----------HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CCccHHHHHHHHHHH-----------HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 56666666633333 222 345666666666666 666666666666666652 344444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-09 Score=87.97 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV-AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 622 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
.+.+|.++...|++++|+. .+.++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQ-----------ALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHH-----------HHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHH-----------HHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3578889999999999999 66677777888888 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 701 YINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 701 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+.+ +.+.+|+..|+++....|++
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HHH--------HHHHHHHHHHHHHhccCccc
Confidence 754 77888888888887766543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-09 Score=88.27 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
.+.+|.++...|++++|+..|+++++.+|+++. +++++|.++..+|++++|+. .+.++++.+|+++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-----------NYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHhcCCCcHHH
Confidence 367899999999999999999999999999999 99999999999999999999 666667778888777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
+.+ +.+.+|+..|++++..+|+++
T Consensus 72 ~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHH--------HHHHHHHHHHHHHhccCcccc
Confidence 754 667899999999998887653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.1e-08 Score=86.71 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALE 97 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 97 (904)
+++++|+.+|+++.+..+. .+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 5789999999999987644 344 999999999999999999999986 678999999999998 899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLG 151 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 151 (904)
+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 99999987 678999999999999 899999999999999874 344444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-07 Score=91.07 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=89.7
Q ss_pred CCCcHHHHHHHHHHHHH---c--CCHHHHHHHHHHHHhhChhhHHHhhhcCcc--hHHHHHHHHHHHHhC-----CCHHH
Q psy17306 615 KPDFIDGYINLAAALVA---A--GDMEQAVQAYVTALQYNPSCYLKAIETRPD--FAVAWSNLGCVFNAQ-----GEIWL 682 (904)
Q Consensus 615 ~p~~~~a~~~lg~~~~~---~--g~~~~A~~~~~~al~~~~~~~~~~l~~~p~--~~~a~~~lg~~~~~~-----g~~~~ 682 (904)
+|+++.+++..|.+... . |. -.|+.....+.. .++++++++|+ +..+|..+|.+|... |+.++
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg-~~Al~~l~~A~a----~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ek 222 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLG-SALPDTVHAAVM----MLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEK 222 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTT-SCCHHHHHHHHH----HHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCC-hHHHHhHHHHHH----HHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHH
Confidence 46667788877776644 2 22 123333333333 78888889998 677999999999995 99999
Q ss_pred HHHHHHHHHhcCcCc-HHHHHHHHHHHHHh-cchhHHHHHHHHhhcccCC
Q psy17306 683 AIHHFEKAVSLDPNF-LDAYINLGNVLKEA-RIFDRANTLFYVSSYFMIT 730 (904)
Q Consensus 683 A~~~~~~al~~~p~~-~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~ 730 (904)
|.++|++|++++|+. ..+++.+|..++.. |++++|..++++++...+.
T Consensus 223 A~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 223 AHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999999999975 99999999999884 9999999999999998886
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.7e-08 Score=97.06 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=116.0
Q ss_pred HHhCCchHH--HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhh
Q psy17306 578 IKQNPLLAE--AYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFIDGYINLAAALVAAGD----MEQAVQAYVTALQY 648 (904)
Q Consensus 578 l~~~p~~~~--~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----~~~A~~~~~~al~~ 648 (904)
....|.++. -++..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... .......+..++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~- 265 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID- 265 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-
Confidence 344555544 44566777766554 5899999999999999999999988888863211 1122222222221
Q ss_pred ChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 649 NPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 649 ~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
-..++..+|.++.++..+|.++...|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|.+|+...
T Consensus 266 ----a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 ----NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp ----HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11345678999999999999999999999999999999999975 6788999999999999999999999999999
Q ss_pred CChhh
Q psy17306 729 ITDED 733 (904)
Q Consensus 729 ~~~~~ 733 (904)
|.+..
T Consensus 341 P~~~t 345 (372)
T 3ly7_A 341 PGANT 345 (372)
T ss_dssp CSHHH
T ss_pred CCcCh
Confidence 97753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-07 Score=95.78 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCH-------HHHHH-HHHH--HHhcCcc
Q psy17306 8 GIGLLELAHREYQAGD---YESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKL-------DKSAH-FSTL--AIKQNPL 74 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-------~~A~~-~~~~--al~~~p~ 74 (904)
+-.++.+|..++..++ +.+|+.+|+++++.+|+.+.++..++.++.....+ ..++. .+.. ++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4456778888877665 48899999999999999999999888887532111 11111 2221 2245788
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 8999999999999999999999999999999975 67888999999999999999999999999999875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=91.99 Aligned_cols=170 Identities=13% Similarity=0.007 Sum_probs=123.3
Q ss_pred HHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhc--------------CChhHHHHHHHHHhhhhhhHHH----
Q psy17306 514 AYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREG--------------GSIPITLTFECRKLDKSAHFST---- 575 (904)
Q Consensus 514 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~l~~a~~~~~---- 575 (904)
.++..++.++..+|+|.........+- ...+..+.+. .++..|..+|.+..+-+...++
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly---~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~ 126 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLY---IMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYP 126 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH---HHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345566677788999988874443333 3333322221 2355677777765543322211
Q ss_pred ----------------HHHHhCCchHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHhhCCC--cHHHHHHHH
Q psy17306 576 ----------------LAIKQNPLLAEAYSNLGNVYKE---R--G------QLQEALENYRHAVRLKPD--FIDGYINLA 626 (904)
Q Consensus 576 ----------------~al~~~p~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~a~~~lg 626 (904)
..-..+|+++.+++..|.+... . | ....|...++++++++|+ +..+|..+|
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG 206 (301)
T 3u64_A 127 GFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLT 206 (301)
T ss_dssp THHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred cHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 1223467788888888877643 1 3 257899999999999999 566999999
Q ss_pred HHHHHc-----CCHHHHHHHHHHHHhhChhhHHHhhhcCcch-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCcCc
Q psy17306 627 AALVAA-----GDMEQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNA-QGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 627 ~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 697 (904)
.+|... |+.++|.+ .|+++++++|+. ..+++..|..++. .|++++|..++++|+..+|..
T Consensus 207 ~lY~~vPp~~gGd~ekA~~-----------~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 207 KFYAAAPESFGGGMEKAHT-----------AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHSCTTTTCCHHHHHH-----------HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhCCCccCCCHHHHHH-----------HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999995 99999999 677777788865 8999999999988 499999999999999998874
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=101.43 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=95.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcch
Q psy17306 593 NVYKERGQLQEALENYRHAVRL-----KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDF 663 (904)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~ 663 (904)
.-+..+|++++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++ .+.+.+ ..+|+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~----i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME----PYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHHSCSSCHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----hHHHHcCCCChHH
Confidence 3455789999999999999986 3444 56899999999999999999999999998 455544 467889
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CcC---cHHHHHHHHHHHHHhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL-----DPN---FLDAYINLGNVLKEAR 712 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~a~~~la~~~~~~g 712 (904)
+..+++||.+|..+|++++|+.+|++|+++ .|+ ...+..+|+.+...++
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 344 4555667777765543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=75.35 Aligned_cols=81 Identities=15% Similarity=-0.038 Sum_probs=72.0
Q ss_pred CcchHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 660 RPDFAVAWSNLGCVFNAQGE---IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 660 ~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.++...|++++|+.+|+++++..|.+.+...
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~ 81 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVT 81 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 68899999999999987666 799999999999999999999999999999999999999999999999987555444
Q ss_pred HHHH
Q psy17306 737 ILER 740 (904)
Q Consensus 737 ~l~~ 740 (904)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=100.59 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=87.2
Q ss_pred HHcCCHHHHHHHHHHHHhh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHH
Q psy17306 596 KERGQLQEALENYRHAVRL-----KPDF---IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVA 666 (904)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a 666 (904)
...|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.+++++|+ .+.+.+ ..+|+.+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~----i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK----PYSKHYPVYSLNVASM 384 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHSCSSCHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----HHHHHcCCCChHHHHH
Confidence 3568999999999999986 3444 56889999999999999999999999998 445444 357889999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc-----CcCcHHHH
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSL-----DPNFLDAY 701 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~ 701 (904)
+++||.+|..+|++++|+..|++|+++ .|++|.+.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999998 56666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=79.15 Aligned_cols=91 Identities=10% Similarity=-0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhChhhHHHhhhcC-c-chHHHHHHHHHHHHh
Q psy17306 602 QEALENYRHAVRLKPDFIDGYINLAAALVAAG---DMEQAVQAYVTALQYNPSCYLKAIETR-P-DFAVAWSNLGCVFNA 676 (904)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~-p-~~~~a~~~lg~~~~~ 676 (904)
..+.+.|.+.++.+|.+.++.+++|+++.+.+ +.++++.. +...++.+ | +..+++++||..+.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~l-----------Le~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVL-----------LEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHH-----------HHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH-----------HHHHHhcCCccchHHHHHHHHHHHHH
Confidence 34555555555555666666666666666655 44456663 33333333 4 345566666666666
Q ss_pred CCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 677 QGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 677 ~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
+|+|++|+.+++++|+++|++..+..-
T Consensus 84 l~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 666666666666666666666555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-07 Score=72.91 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 72 NPLLAEAYSNLGNVYKERGQ---LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 72 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
+|+++..+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34455555555555544333 455555555555555555555555555555555555555555555555554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=76.68 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc---CHHHHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhCcHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQCR---KLDKSAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEALEN 98 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 98 (904)
...+.+.|.+.+..+|.+.++.+.+|+++.+.+ +.++++.+++.+++.+ | ++.++++.+|..+++.|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445566666666666777777777777777766 5567777777777776 6 4567777777777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHH
Q psy17306 99 YRHAVRLKPDFIDGYINL 116 (904)
Q Consensus 99 ~~~al~~~p~~~~~~~~l 116 (904)
++++++.+|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 777777777776654443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=72.86 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
++.-.+.+|..++..|+|..|+..|+++++..+ .--...+..+.++..+|.++.++|++++|+..++++++++|++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~----~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLD----EGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhh----ccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456678999999999999999998888876321 1111245678999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17306 698 LDAYINLGNV 707 (904)
Q Consensus 698 ~~a~~~la~~ 707 (904)
+.+..+++.+
T Consensus 80 ~~~~~n~~~~ 89 (104)
T 2v5f_A 80 QRANGNLKYF 89 (104)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHHHH
Confidence 9999998843
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-07 Score=97.97 Aligned_cols=94 Identities=7% Similarity=-0.063 Sum_probs=81.6
Q ss_pred HcCCHHHHHHHHHHHHhhChhhHHHhh-hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CcCcHHHH
Q psy17306 631 AAGDMEQAVQAYVTALQYNPSCYLKAI-ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--------DPNFLDAY 701 (904)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~~~~~~~~l-~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~ 701 (904)
..|+|++|+..++++|++. .+.+ ..+|+.+.++.+||.+|..+|+|++|+.++++++++ +|+-+..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~----~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKM----SSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHH----TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHh----hCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4689999999999999843 3332 356778889999999999999999999999999998 56667789
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccc
Q psy17306 702 INLGNVLKEARIFDRANTLFYVSSYFM 728 (904)
Q Consensus 702 ~~la~~~~~~g~~~~A~~~~~~a~~~~ 728 (904)
.+||.+|..+|++++|+.+|++|+++.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=93.08 Aligned_cols=122 Identities=11% Similarity=-0.064 Sum_probs=94.1
Q ss_pred hhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcH
Q psy17306 548 DLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL--------KPDFI 619 (904)
Q Consensus 548 ~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 619 (904)
.-+..+|++++|+..+++.+++....+ -..+|....++.++|.+|..+|+|++|+.++++++.+ +|+..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~l---g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERL---PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCC---CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcC---CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 335578899999999999433222110 1124556789999999999999999999999999986 34455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhh-cCcchHHHHHHHHHHHHh
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIE-TRPDFAVAWSNLGCVFNA 676 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~-~~p~~~~a~~~lg~~~~~ 676 (904)
..+++||.+|..+|++++|+.+|+++++ .+...+. .+|....++.+|+.+...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~----i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD----IMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998 4554433 467777777888877654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8.3e-06 Score=67.97 Aligned_cols=80 Identities=15% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHH
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD-------PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDV 736 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 736 (904)
+.-.+.+|..++..|+|..|+.+|++|++.. +..+.++.+||.++.++|++++|+.++++++...|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4557899999999999999999999999973 356899999999999999999999999999999999888877
Q ss_pred HHHHHHH
Q psy17306 737 ILERCEA 743 (904)
Q Consensus 737 ~l~~~~~ 743 (904)
++.....
T Consensus 85 n~~~~~~ 91 (104)
T 2v5f_A 85 NLKYFEY 91 (104)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7664443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0002 Score=78.55 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=132.0
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHh--CCchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQ---------LQEALENYRHAV 612 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al 612 (904)
...-+.+.+.|+.++|+.+|++ .... .| +..+|..+-.++...+. .++|.+.|+++.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~-----------M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDE-----------ARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHH-----------HHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-----------HHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 4555778899999999999998 5443 34 45667777666655443 688999999988
Q ss_pred hhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 613 RLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 613 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
... +-+..+|..+...|.+.|++++|.+.|+++.+. ...|+ ...|..+-..|.+.|+.++|.+.|++..
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------GIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 763 224789999999999999999999977765432 23454 5788999999999999999999999998
Q ss_pred hc--CcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 692 SL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 692 ~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
+. .| +...+..+-.++.+.|+.++|.++|++..+....+
T Consensus 168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 168 ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 86 34 56788999999999999999999999998866544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.1e-05 Score=62.31 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhChhhHHHhhhcC-c-chHHHHHHHHHHH
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ---AVQAYVTALQYNPSCYLKAIETR-P-DFAVAWSNLGCVF 674 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~l~~~-p-~~~~a~~~lg~~~ 674 (904)
....+...|.+.+..++.+..+.+++|+++....+... ++. .+...+..+ | ...+.++.||..+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~-----------lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIV-----------LLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHH-----------HHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCCcchHHHHHHHHHHHH
Confidence 34566777787877788889999999999999887766 777 444444444 4 5678899999999
Q ss_pred HhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHH
Q psy17306 675 NAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708 (904)
Q Consensus 675 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 708 (904)
+++|+|++|..+++..|+++|++..+..-...+-
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988776554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00064 Score=74.61 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=102.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHhcC-cccHHHHHHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQE-TNNTGVLLLLSSIHFQCR---------KLDKSAHFSTLAIKQN-PLLAEAYSNLG 83 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~~la 83 (904)
-..+.+.|++++|+.+|+++.+.. +.+...+..+-.++...+ ..++|..+|+++.... +.+..+|..+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355667788888888888776542 224555555555554433 3567777777776542 12466777777
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHcCCh
Q psy17306 84 NVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--NPDLYCVRSDLGNLLKALGRL 160 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 160 (904)
..|.+.|++++|...|++..... .-+..+|..+-..|.+.|+.++|.+.|+++.+. .| +...+..+...+.+.|+.
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCH
Confidence 78888888888888888776653 224666777777777888888888888877654 23 345667777777777777
Q ss_pred HHHHHHH
Q psy17306 161 DEAKDLY 167 (904)
Q Consensus 161 ~~A~~~~ 167 (904)
++|..++
T Consensus 192 d~A~~ll 198 (501)
T 4g26_A 192 DKVYKTL 198 (501)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00015 Score=60.66 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHH---HHHHHHHHHhcC-c-ccHHHHHHHHHHHHHhCcHHHHHH
Q psy17306 23 DYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDK---SAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEALE 97 (904)
Q Consensus 23 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 97 (904)
....+...|.+.+..++.+.++.+.+|+++....+... ++.+++..+..+ | ..-..++.+|..+++.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455556666666666677777777777776665554 777777777665 4 455677777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHH
Q psy17306 98 NYRHAVRLKPDFIDGYIN 115 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~ 115 (904)
+++.+++..|++..+...
T Consensus 96 ~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHH
Confidence 777777777777665443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00063 Score=57.99 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=86.5
Q ss_pred hCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 614 LKPDFIDGYINLAAALVAAGDM------EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 614 ~~p~~~~a~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
+.|++++.|..........|+. ++-++.|++++..-|-. + -.........|...+.. ...++.++|.+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~--k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy 83 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD--K-YGQNESFARIQVRFAEL-KAIQEPDDARDYF 83 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG--G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc--c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 4566777777777776666766 55566555555544321 1 12233345566666754 5669999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHH
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDID 735 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 735 (904)
+.+++++...+.+|...|..-.++|+...|.+++.+++...+.+..+.
T Consensus 84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999999888999999999999999999999999999999988765443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00047 Score=60.41 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCc---ccHH
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNN---------TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP---LLAE 77 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~ 77 (904)
+++.....++..|.|+.|+-....++....++ ..++..+|..++..|+|.+|...|++++.... .+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788888899999999998888876543222 34788889999999999999999999876422 2221
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLL 154 (904)
Q Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 154 (904)
....++. ...+.. .... +.+.+..+.++.||..++++++|+..++.+-. ....+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1111110 000000 1111 34567889999999999999999998765422 123466677777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0023 Score=54.53 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=89.9
Q ss_pred hCCCCHHHHHHHHHHHHhhcCH------HHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy17306 37 QETNNTGVLLLLSSIHFQCRKL------DKSAHFSTLAIKQNPL--------LAEAYSNLGNVYKERGQLQEALENYRHA 102 (904)
Q Consensus 37 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 102 (904)
..|++++.|.......-..|+. ++-++.|++++..-|. ....|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5789999999999888888998 8888999999986554 24456666644 5668999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 103 VRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 103 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
+.++...+.+|+..|..-.++|+...|.+.+.+++...|.....
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 98888888899999999999999999999999999998876543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00055 Score=59.97 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHH
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLK---PDF------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 654 (904)
...+++.-...+...|.|+.|+-....++.+. |+. ..++..+|.+++..|+|..|...|+++|+ ..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq-----~~ 93 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ-----QK 93 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----HH
Confidence 34566777777888999999999999988764 331 24889999999999999999999999985 33
Q ss_pred HhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 655 KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 655 ~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
+.+...+.. ...++. ...+. ....+ +...+..+.++.||.++|++++|+.+++..
T Consensus 94 k~l~k~~s~---~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 94 KALSKTSKV---RPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HCC----------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHhcCCCc---cccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 333222211 101110 00000 01111 335566666777777777777777666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.02 Score=48.68 Aligned_cols=81 Identities=15% Similarity=0.024 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 616 PDFIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+.++.+.+++|+++....+.+ +++. .+...+..+| ...+.++.||..++++|+|++|..+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~-----------LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVK-----------ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHH-----------HHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345778888888888877554 4555 3334444445 456778888888888888888888888888
Q ss_pred hcCcCcHHHHHHHHHH
Q psy17306 692 SLDPNFLDAYINLGNV 707 (904)
Q Consensus 692 ~~~p~~~~a~~~la~~ 707 (904)
+++|+|..+..-...+
T Consensus 105 ~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 105 EHERNNKQVGALKSMV 120 (144)
T ss_dssp HTCCCCHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHH
Confidence 8888887765544333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0095 Score=49.89 Aligned_cols=79 Identities=15% Similarity=0.025 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCc-chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 618 FIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRP-DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
++.+.+++|+++.+..+.+ +++. .+...+..+| ...+.++.||..+.++|+|++|..+.+..|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~-----------LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVK-----------ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHH-----------HHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHH-----------HHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4567777777777766543 3555 3333334445 34567777777777777777777777777777
Q ss_pred CcCcHHHHHHHHHH
Q psy17306 694 DPNFLDAYINLGNV 707 (904)
Q Consensus 694 ~p~~~~a~~~la~~ 707 (904)
.|+|..+..-...+
T Consensus 108 eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 ERNNKQVGALKSMV 121 (134)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 77776665544433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0065 Score=50.89 Aligned_cols=85 Identities=7% Similarity=-0.030 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHH
Q psy17306 663 FAVAWSNLGCVFNAQGEI---WLAIHHFEKAVSLDPN-FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVIL 738 (904)
Q Consensus 663 ~~~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 738 (904)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|..+.+..+...|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 468899999999998764 5799999999999994 589999999999999999999999999999999999888888
Q ss_pred HHHHHHHHH
Q psy17306 739 ERCEAKTEE 747 (904)
Q Consensus 739 ~~~~~~~~~ 747 (904)
..+..++.+
T Consensus 119 ~~Ie~ki~k 127 (134)
T 3o48_A 119 SMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.021 Score=48.54 Aligned_cols=71 Identities=8% Similarity=-0.121 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHH
Q psy17306 41 NTGVLLLLSSIHFQCRK---LDKSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 111 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 111 (904)
++++.+.+|+++....+ ..+++.+++..+..+| ..-+.++.+|..++++|+|.+|..+.+.+++..|++..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34444444444444332 2234444444444444 23344444444444444444444444444444444443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.55 Score=40.71 Aligned_cols=165 Identities=12% Similarity=0.002 Sum_probs=104.7
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h-------
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR--L------- 614 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~------- 614 (904)
..++..++-.|.|..++-.+.+ -+...+.+.-+.||....++..|+.+++..++ .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~----------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK----------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT----------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred hhhhhhhhhcchHhHHHHHHHh----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 6677788889999888865544 34577788889999999999999999999993 2
Q ss_pred --------CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhChh--hHH-Hhhhc-Ccc-----hH----------HH
Q psy17306 615 --------KPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPS--CYL-KAIET-RPD-----FA----------VA 666 (904)
Q Consensus 615 --------~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~-~~l~~-~p~-----~~----------~a 666 (904)
+|.+.+ .+..+|.++.+.|+-++|+.+|.....+.+- ..+ -..+. -|. +. ..
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y 180 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEY 180 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhh
Confidence 244434 5667899999999999999999888777651 000 00000 010 00 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH-HHHHHHHHHHHhcchhHHHHHHHHhhcccC
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD-AYINLGNVLKEARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 729 (904)
+......+..... ...++-...-|.... .-.+.+.-|..+|..++...+|...+...|
T Consensus 181 ~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 181 VSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 1111122222221 333444455566533 234566677778888888888877766554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.036 Score=62.69 Aligned_cols=57 Identities=16% Similarity=0.001 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHH
Q psy17306 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168 (904)
Q Consensus 112 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (904)
.+..-+..+...|+++-|+++.++++...|.....|..|+.+|..+|+|+.|+-.++
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 444555666666666666666666666666666666666666666666666665553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.27 Score=58.05 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=78.5
Q ss_pred HHHHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHH
Q psy17306 17 REYQAGDYESAER-HCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 95 (904)
Q Consensus 17 ~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 95 (904)
.....+++++|.. ++. .-|+ ...+..+...+...|.+++|+...+ +| ... -......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~---f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP-----DQ---DQK---FELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHH---HHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC-----Cc---chh---eehhhhcCCHHHH
Confidence 4456888888876 431 1110 2223556666777888888876553 22 111 2345678999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCChhhHHHHHHHHHHHcCChHHHHH
Q psy17306 96 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY--------NPDLYCVRSDLGNLLKALGRLDEAKD 165 (904)
Q Consensus 96 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~ 165 (904)
.+..+. .++...|..+|..+...|+++.|+.+|.++-.. ...+.+.+..++......|++..|..
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~ 744 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFN 744 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHH
Confidence 887543 356788999999999999999999999886221 12233333444444455555544443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.63 Score=40.32 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=91.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 17 REYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
..++-.+|+.++-+-.-+ .|..++....++.+++-.|.|..++-.+. +-+.+.+.+..+.||...++|..|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888776543322 45556778888999999999999988765 3456778888999999999999999
Q ss_pred HHHHHHHhc-----------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhh
Q psy17306 97 ENYRHAVRL-----------------KPDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145 (904)
Q Consensus 97 ~~~~~al~~-----------------~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 145 (904)
.+++..++- +|.+.+ .+..+|.++.+.|+.++|+.++......+|-.+.
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 999999942 233333 4667889999999999999999999888876543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.53 Score=48.83 Aligned_cols=199 Identities=13% Similarity=0.008 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhh
Q psy17306 493 KYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAH 572 (904)
Q Consensus 493 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~ 572 (904)
...+..|+.++...++.+.....+......+..-|... .....+.+...+... .+..+.-++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak-~~k~v~~l~~~~~~~------~~~~~~~~~~~~~------- 84 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAK-AAKLVRSLVDMFLDM------DAGTGIEVQLCKD------- 84 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHH-HHHHHHHHHHHHTTS------CCCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhcC------CCcHHHHHHHHHH-------
Confidence 35677899999999999999999987777666655432 111122222222221 2333334444444
Q ss_pred HHHHHHHhCCch----HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C----cHHHHHHHHHHHHHcCCHHHHHH
Q psy17306 573 FSTLAIKQNPLL----AE--AYSNLGNVYKERGQLQEALENYRHAVRLKP--D----FIDGYINLAAALVAAGDMEQAVQ 640 (904)
Q Consensus 573 ~~~~al~~~p~~----~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~~~a~~~lg~~~~~~g~~~~A~~ 640 (904)
+++...+. -. .-..+|..|...|+|.+|.+.+.+.++.-. + -.+.+..-..+|...+++.++..
T Consensus 85 ----~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~ 160 (394)
T 3txn_A 85 ----CIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARA 160 (394)
T ss_dssp ----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHH
Confidence 33322111 11 234899999999999999999999887521 1 24567778889999999999999
Q ss_pred HHHHHHhhChhhHHHhhhcCcc-hHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHhcc
Q psy17306 641 AYVTALQYNPSCYLKAIETRPD-FAVAWSNLGCVFN-AQGEIWLAIHHFEKAVSLD-----PNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 641 ~~~~al~~~~~~~~~~l~~~p~-~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~-----p~~~~a~~~la~~~~~~g~ 713 (904)
.+.++... ..++-.+|. .+.....-|..+. ..++|..|..+|-.+++-. |....+...++.+-...++
T Consensus 161 ~l~~a~~~-----~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 161 ALTSARTT-----ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHH-----HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhh-----hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 88888753 222323443 3445566788888 8999999999999997542 2223444445555555555
Q ss_pred h
Q psy17306 714 F 714 (904)
Q Consensus 714 ~ 714 (904)
.
T Consensus 236 r 236 (394)
T 3txn_A 236 S 236 (394)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.29 Score=50.76 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=114.4
Q ss_pred HHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCch--HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC
Q psy17306 539 TKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLL--AEAYSNLGNVYKE-RGQLQEALENYRHAVRLK 615 (904)
Q Consensus 539 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~--~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~ 615 (904)
...+...+|..|...|+.++-..++..... .+..-|.. +.....+-..+.. -+..+.-++.+..+++-.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRP--------FLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTT--------GGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345568999999999999999988877221 01111111 1112222222221 233444455555555432
Q ss_pred ----CCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHH
Q psy17306 616 ----PDFID--GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689 (904)
Q Consensus 616 ----p~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 689 (904)
-.... .-..+|.+|+..|+|.+|.+.+.+.++ .+.+ +.......+++..-..+|..+|++.++...+.+
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~----~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLR----ELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11222 234899999999999999998887775 2222 122234456778888999999999999999999
Q ss_pred HHhcC------cC-cHHHHHHHHHHHH-HhcchhHHHHHHHHhhcc
Q psy17306 690 AVSLD------PN-FLDAYINLGNVLK-EARIFDRANTLFYVSSYF 727 (904)
Q Consensus 690 al~~~------p~-~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~ 727 (904)
|.... |. .+.....-|.+++ ..++|.+|...|-.+...
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 97762 22 2445666788888 899999999999888643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.11 Score=58.76 Aligned_cols=128 Identities=9% Similarity=0.019 Sum_probs=89.8
Q ss_pred HcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHhhChhhHH-------HhhhcCcchHH
Q psy17306 597 ERGQ-LQEALENYRHAVRLKPDFIDGYINLAAALV--AA-GDMEQAVQAYVTALQYNPSCYL-------KAIETRPDFAV 665 (904)
Q Consensus 597 ~~g~-~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~-g~~~~A~~~~~~al~~~~~~~~-------~~l~~~p~~~~ 665 (904)
..++ ++.|+..+++..+.+|.... ++..+.+.. .. .+--+|++.+.+.++....... ......|....
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3445 68899999999999997643 333333322 22 2445677777666642110000 00011122344
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
.+..-+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+|+.|+-.++.+=
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 566668888889999999999999999999999999999999999999999998887763
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.23 Score=47.57 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
...+++.|++++|+......++.+|.++.....+..+++-.|++++|..-++.+.+++|.....-..+..+ -.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HH
Confidence 34567899999999999999999999999999999999999999999999999999999854432211111 11
Q ss_pred HHHHHHHHHhc--C---CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh
Q psy17306 95 ALENYRHAVRL--K---PDFID---GYINLAAALVAAGDMEQAVQAYVTALQYNPDL 143 (904)
Q Consensus 95 A~~~~~~al~~--~---p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 143 (904)
|...=.+++.- . +..+. ....-+......|+.++|...-.++++.-|..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11111222221 1 22222 33444566667899999999999999887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.71 Score=41.29 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=52.5
Q ss_pred HhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy17306 53 FQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132 (904)
Q Consensus 53 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 132 (904)
...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- + +-.+..+|...|+.+.-.+.
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHHHHhCCHHHHHHH
Confidence 5667777777666543 445667777777777777777777776642 1 22333445556665544444
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH
Q psy17306 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 133 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
-+.+....-. .....++...|++++++++|
T Consensus 83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHH
Confidence 3333322211 12223444556666665554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.29 Score=46.86 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=49.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChh
Q psy17306 595 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS 651 (904)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 651 (904)
+.+.|..++|++.....++.+|.++.....+..+++-.|+|+.|.+.++.+.+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 456789999999999999999999999999999999999999999966655554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.96 Score=53.21 Aligned_cols=141 Identities=18% Similarity=0.083 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCc
Q psy17306 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91 (904)
Q Consensus 12 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 91 (904)
-..+..+...|.+++|+...+ ++... .......|++++|.++.+. .++...|..+|..+.+.|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 344455566777777776542 22222 3346788999999998652 3567899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy17306 92 LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRS 171 (904)
Q Consensus 92 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (904)
++.|..+|.++- + +-.+..++...|+.+......+.+... ... .....++...|++++|++++
T Consensus 697 ~~~A~~~y~~~~-----d---~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~~----~~A~~~~~~~g~~~~a~~~~---- 759 (814)
T 3mkq_A 697 FKLAIEAFTNAH-----D---LESLFLLHSSFNNKEGLVTLAKDAETT-GKF----NLAFNAYWIAGDIQGAKDLL---- 759 (814)
T ss_dssp HHHHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH----HHHHHHHHHHTCHHHHHHHH----
T ss_pred HHHHHHHHHHcc-----C---hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cch----HHHHHHHHHcCCHHHHHHHH----
Confidence 999999999862 2 223445555677777665555555442 222 12234566789999998876
Q ss_pred hhHHHHHHcCCHHHHHHHHh
Q psy17306 172 DLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 172 ~l~~~~~~~g~~~~A~~~~~ 191 (904)
...+++++|+.+.+
T Consensus 760 ------~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 760 ------IKSQRFSEAAFLGS 773 (814)
T ss_dssp ------HHTTCHHHHHHHHH
T ss_pred ------HHcCChHHHHHHHH
Confidence 77888888888765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=3.6 Score=45.74 Aligned_cols=78 Identities=13% Similarity=-0.034 Sum_probs=56.0
Q ss_pred HHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy17306 218 ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296 (904)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (904)
++...+.+......++.. ...++...++.|++..|..+|.++-..........+.+|.++...|+.++|...|+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 270 EQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444444443333333 344445566789999999999876554445678899999999999999999999999985
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.04 E-value=1.3 Score=39.61 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++...+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|+++-+
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------- 62 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------- 62 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------
Confidence 345555554 5679999999987765 5688999999999999999999994443321
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
+..+..+|...|+.+.-...-+.+...... .....++..+|+.++++++|.++-
T Consensus 63 ---~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 63 ---FDKLSFLYLVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHCC
Confidence 345556666777776655555555443321 222345678888999988886653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.5 Score=49.53 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHH-HHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS-AHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 9 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
..+...|......|+.+.|...+.+++......+-.- . ....+-.+ ...++. ....+...++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~-----~~~~w~~~~r~~l~~------~~~~a~~~~~~~~l 182 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--L-----RDFQFVEPFATALVE------DKVLAHTAKAEAEI 182 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--G-----TTSTTHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--C-----CchhHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3455666667778999999999999988754321100 0 00111111 111111 11335567788899
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 139 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 139 (904)
..|++.+|+..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.
T Consensus 183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.46 Score=49.86 Aligned_cols=115 Identities=15% Similarity=0.014 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhChhhHHHhhhcCcchHHH
Q psy17306 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV-QAYVTALQYNPSCYLKAIETRPDFAVA 666 (904)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~l~~~p~~~~a 666 (904)
+...|......|+.+.|...+.+++.+....+-. ... ...|-.+. ..++ .....+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~-----------------~~~~~a 173 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALV-----------------EDKVLA 173 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHH-----------------HHHHHH
Confidence 3344444455688888888888888875332110 000 01111111 1111 011245
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 667 WSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 667 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
...++..+...|++.+|+..+.+++..+|-+..++..+-.++...|+..+|+..|++...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999999999999999999999999988754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.63 Score=50.04 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+..||.+......+..|.. .|.+|....|++...++.||.+....|+.-+|+-+|.+++......+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~-----------~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAES-----------YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----------HHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence 367788999988899999999 777777889999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHh
Q psy17306 700 AYINLGNVLKEA 711 (904)
Q Consensus 700 a~~~la~~~~~~ 711 (904)
+..|+..++.+.
T Consensus 222 a~~nL~~~f~~~ 233 (497)
T 1ya0_A 222 ASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=4.5 Score=43.09 Aligned_cols=204 Identities=14% Similarity=0.038 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQ------ETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 78 (904)
....+..+..+..+ ..|++.+|++.+..+.+. .+....+...+..++...|+++...+.+....+.......+
T Consensus 14 s~~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a 92 (445)
T 4b4t_P 14 SQILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS 92 (445)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH
Confidence 33445556666665 358899999887655443 23356778888899999999999888777655544332222
Q ss_pred HHHHHH---HHH-HhCcHHHHHHHHHHHHhcC----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q psy17306 79 YSNLGN---VYK-ERGQLQEALENYRHAVRLK----PD-------FIDGYINLAAALVAAGDMEQAVQAYVTALQY---- 139 (904)
Q Consensus 79 ~~~la~---~~~-~~g~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 139 (904)
...+.. -+. .....+. ......+..- .. .......|+.++...|++.+|...+.....-
T Consensus 93 i~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 93 IQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp HHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 222221 111 1222111 1112222211 11 2345678899999999999999998887532
Q ss_pred CCCh--hhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchH
Q psy17306 140 NPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217 (904)
Q Consensus 140 ~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (904)
.+.. .+.+....+++...+++..|...+ .++.
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~-----------------------~ki~----------------------- 204 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLS-----------------------RKIL----------------------- 204 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHH-----------------------HHHH-----------------------
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHH-----------------------HHHH-----------------------
Confidence 1111 345555666666666666665544 2100
Q ss_pred HHhhHHHHHhhc--Cc-hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q psy17306 218 ESAHFSTLAIKQ--NP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRL 263 (904)
Q Consensus 218 ~a~~~~~~~~~~--~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 263 (904)
.+.... .| -....+...|.++...++|.+|..+|..++..
T Consensus 205 ------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 205 ------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 011111 11 12456677899999999999999998888754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.81 Score=52.99 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--Cc
Q psy17306 618 FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL--DP 695 (904)
Q Consensus 618 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 695 (904)
....++.+-..|++.|+.++|...|.+..++. .+ ...|+ ...|+.|-..|++.|+.++|.+.|++..+. .|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~----~k--G~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P 198 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR----QK--RKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH----HH--HTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----hc--CCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 34578999999999999999999776543210 11 23444 578999999999999999999999999876 45
Q ss_pred CcHHHHHHHHHHHHHhcch-hHHHHHHHHhhcccCChhhHHHH
Q psy17306 696 NFLDAYINLGNVLKEARIF-DRANTLFYVSSYFMITDEDIDVI 737 (904)
Q Consensus 696 ~~~~a~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~ 737 (904)
+...|..+-.++++.|+. ++|.++|+.+.+.+..++.+...
T Consensus 199 -DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 199 -DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp -CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred -cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 677888888899999985 78999999999988877665544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.82 E-value=5 Score=48.91 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--------------------
Q psy17306 47 LLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-------------------- 106 (904)
Q Consensus 47 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 106 (904)
.+...+...+.++-|.++ +...|.++...+.+|.++...|++++|..+|+++...-
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 445556666777665543 33455666677888889999999999988888763210
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh-h----hHHHHHHHHHHHcCChHHHHHHH
Q psy17306 107 ---PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL-Y----CVRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 107 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~ 167 (904)
...+..|..+...+.+.+.++.+++....|++..+.+ . ..|..+-..+...|+|++|-..+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1123456667778888888999999888888765432 2 25667777788888888887666
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.67 E-value=1.2 Score=51.73 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q psy17306 44 VLLLLSSIHFQCRKLDKSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK-PDFIDGYINLAA 118 (904)
Q Consensus 44 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 118 (904)
.+..+...+.+.|+.++|..+|..+.+. ...+..+|..+...|.+.|+.++|...|++..... .-+..+|..+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4666777778888888888887665432 12246677777778888888888888888776653 223566777777
Q ss_pred HHHHcCC-HHHHHHHHHHHHhc
Q psy17306 119 ALVAAGD-MEQAVQAYVTALQY 139 (904)
Q Consensus 119 ~~~~~g~-~~~A~~~~~~al~~ 139 (904)
++.+.|+ .++|.+.++++...
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHc
Confidence 7777776 46777777777654
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.74 Score=49.51 Aligned_cols=63 Identities=27% Similarity=0.377 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 648 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 648 (904)
..+..||.+......++.|..+|.+|+.+.|++...++.||.+....|+.-+|+=+|.+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 467889999998899999999999999999999999999999999999999999877776654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=20 Score=39.77 Aligned_cols=146 Identities=16% Similarity=0.063 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH-
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY- 86 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~- 86 (904)
.+..+..|...+..|++..+..+... +..+|-.+ +.....+....+.. .-.-+...+..+|+.+..-.......
T Consensus 6 ~~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~~--yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~ 80 (618)
T 1qsa_A 6 QRSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLYP--YLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVN 80 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTHH--HHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcHH--HHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 45678889999999999887776443 33455422 22222222222211 12244555666777766555444433
Q ss_pred --HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHH
Q psy17306 87 --KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162 (904)
Q Consensus 87 --~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 162 (904)
.+.+++..-+..+.. .|.+....+..+......|+..+|.....++-......+.....+...+...|....
T Consensus 81 ~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 81 ELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 345677766665543 378888888888899999998888888877766655556666666666666565544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.33 E-value=21 Score=37.92 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVR---LKPDFI----DGYINLAAALVAAGDMEQAVQAYVTALQYN 298 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (904)
.+.+....+++...+++.+|...+.++.. ..+..+ ..+...|..+...++|.+|-.+|..++...
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 56778889999999999999999998743 233333 356778999999999999999999998643
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.23 Score=52.89 Aligned_cols=144 Identities=9% Similarity=-0.003 Sum_probs=58.7
Q ss_pred CchhHhhcCChhHHHHHHHHHh--hhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHh
Q psy17306 546 EPDLTREGGSIPITLTFECRKL--DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALE----------NYRHAVR 613 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l--~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~----------~~~~al~ 613 (904)
.-..+...+++++|..+-.... +....+.. -..++-.+.+|+..+.++...|+...... .+-.++.
T Consensus 142 ~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nr--rtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~r 219 (523)
T 4b4t_S 142 VQLFLWDSKELEQLVEFNRKVVIPNLLCYYNL--RSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLK 219 (523)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHhH--HhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Confidence 3334556788888887766522 11110110 12355567889999999888887665322 2222222
Q ss_pred h-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 614 L-----KPD-FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 614 ~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
. ++. ....++.+-..|...+.++.|..+..++. .|. .-..++..+..++.+|.++..+++|.+|.+++
T Consensus 220 ta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~----~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 220 IASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPH----TDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCT----TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCc----ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 222 35678888999999999999999666552 111 00112233567888999999999999999999
Q ss_pred HHHHhcCcCc
Q psy17306 688 EKAVSLDPNF 697 (904)
Q Consensus 688 ~~al~~~p~~ 697 (904)
..|+...|.+
T Consensus 294 ~~A~rkap~~ 303 (523)
T 4b4t_S 294 IAAIRKAPHN 303 (523)
T ss_dssp HHHTSSCSCS
T ss_pred HHHHHhCCcc
Confidence 9999987654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.03 E-value=1.4 Score=46.90 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCc
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKP---DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p 661 (904)
..++..+|..|...|++++|.+.|.++..... ...+.+.....++...+++..+...+.++. ..+...+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~--------~~~~~~~ 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN--------SMIEKGG 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHHTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--------HhhhcCC
Confidence 34677788888888888888888888776532 235677777777777788887777444331 1112222
Q ss_pred c--h-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 662 D--F-AVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 662 ~--~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
+ . .......|.++...++|..|...|-.++.-
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 1 123344566666677777777777666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.92 E-value=4.5 Score=49.31 Aligned_cols=143 Identities=10% Similarity=-0.065 Sum_probs=95.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-h--------hhHH---Hhh
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN-P--------SCYL---KAI 657 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------~~~~---~~l 657 (904)
.+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++-... . .... ...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445566677765544 344566777777888999999999999988887653211 0 0011 111
Q ss_pred hcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCc-CcH----HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChh
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP-NFL----DAYINLGNVLKEARIFDRANTLFYVSSYFMITDE 732 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 732 (904)
......+..|..+..++.+.|.++.+++.-+.|++..+ ++. ..|.++-..+...|+|++|-..+...-+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~ 972 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS 972 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence 12233456788888999999999999999999998743 332 2577888889999999999888866544443334
Q ss_pred hHHH
Q psy17306 733 DIDV 736 (904)
Q Consensus 733 ~~~~ 736 (904)
.+..
T Consensus 973 cLr~ 976 (1139)
T 4fhn_B 973 CLLD 976 (1139)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.68 E-value=2 Score=45.58 Aligned_cols=100 Identities=8% Similarity=-0.052 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC--CCCH----H
Q psy17306 41 NTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN---PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK--PDFI----D 111 (904)
Q Consensus 41 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~ 111 (904)
...++..+|..|+..|+++.|.+.|.++.... ......+.....++...+++..+...+.++.... ..++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 45578889999999999999999999887642 2346778888888889999999999999886542 1122 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy17306 112 GYINLAAALVAAGDMEQAVQAYVTALQYN 140 (904)
Q Consensus 112 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 140 (904)
.....|.+++..++|..|-..|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34455677778899999999888876553
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.36 E-value=1.4 Score=46.84 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=59.7
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHhhcCHHHHH----------HHHHHHHh-----
Q psy17306 17 REYQAGDYESAERHCMQLWR-----------QETNNTGVLLLLSSIHFQCRKLDKSA----------HFSTLAIK----- 70 (904)
Q Consensus 17 ~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~----- 70 (904)
.++..+++++|..+...++. .++-.+.+|+..+.++-..|+..... ..+-.++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 35678899999887765541 13335667777777777777665432 12222222
Q ss_pred cCc-ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy17306 71 QNP-LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPD 142 (904)
Q Consensus 71 ~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 142 (904)
.++ ..+..+..+-+.|...+.|++|.....++. .|.. ...++.+|.++...++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 246678888999999999999999999984 3432 345778899999999999999999999998776
Q ss_pred h
Q psy17306 143 L 143 (904)
Q Consensus 143 ~ 143 (904)
+
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.01 E-value=22 Score=35.29 Aligned_cols=126 Identities=9% Similarity=-0.071 Sum_probs=69.9
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEALENYRHAVRL-----KPDFIDGYIN 624 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~ 624 (904)
..|+|=+|.+.++....+ .+... .+..+.++.-+..+.+.|++..|.+...-.++. .|-+.....+
T Consensus 25 ~~G~yYEAhQ~~Rtl~~R-------y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 25 KAGDYYEAHQTLRTIANR-------YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHTCHHHHHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred hccChHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666666652111 11111 123345555666666677777666654444433 2334455556
Q ss_pred HHHHHHHcCCHH-HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHH
Q psy17306 625 LAAALVAAGDME-QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFE 688 (904)
Q Consensus 625 lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 688 (904)
+..++.....-+ .=..+..++++ +-.+.-...-.++..+..+|..|...|++.+|..+|-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~----WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNN----WSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHH----HHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHH----HHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666655433211 11233334443 3322222234678999999999999999999999886
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.15 E-value=51 Score=32.94 Aligned_cols=122 Identities=10% Similarity=0.064 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-----CcccHH
Q psy17306 12 LELAHREYQAGDY---ESAERHCMQLWRQE------TNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ-----NPLLAE 77 (904)
Q Consensus 12 ~~~a~~~~~~g~~---~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 77 (904)
+.+-..-+..|+| =+|-+.++.+.... ....++++.-+..+++.|++.-|.++..-.++. -|-+..
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~ 95 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 3344445566666 55555555443211 112234444455555666665555444333321 111233
Q ss_pred HHHHHHHHHHHhCc--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy17306 78 AYSNLGNVYKERGQ--------LQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133 (904)
Q Consensus 78 ~~~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 133 (904)
..-.+..++..... ..+|+.+-.+.-...-.++..+..+|..|+.-+++.+|..+|
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 33444444433322 122333322211112345778888888888888888888887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 904 | ||||
| d1ofcx3 | 102 | a.187.1.1 (X:697-798) HAND domain of the nucleosom | 2e-45 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-31 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-25 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-21 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-19 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-18 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-14 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-11 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-25 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-20 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 4e-15 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-14 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-14 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-16 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-07 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 4e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 7e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.003 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-15 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-14 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-13 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-08 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-15 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-11 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-10 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-15 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-13 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-08 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 6e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-14 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-13 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-13 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-08 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 9e-07 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 6e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-13 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 2e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-13 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-11 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-09 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-09 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-11 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 3e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 6e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-11 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-10 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-10 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-05 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 8e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 6e-10 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-07 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 1e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-05 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.001 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.001 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.002 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-07 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-05 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 4e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-05 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 4e-09 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 0.001 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 3e-06 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-04 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-08 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 2e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 4e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 7e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 1e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 2e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 9e-04 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 4e-04 | |
| d1zu2a1 | 145 | a.118.8.1 (A:1-145) Mitochondrial import receptor | 0.004 |
| >d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HAND domain of the nucleosome remodeling ATPase ISWI superfamily: HAND domain of the nucleosome remodeling ATPase ISWI family: HAND domain of the nucleosome remodeling ATPase ISWI domain: HAND domain of the nucleosome remodeling ATPase ISWI species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 156 bits (395), Expect = 2e-45
Identities = 87/99 (87%), Positives = 94/99 (94%)
Query: 805 AVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPK 864
AVDAYF+EALR SEPKAPKAPRPPKQPIVQDFQFFPPRLFE+LDQEIYYFRKTVGYKVPK
Sbjct: 1 AVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPK 60
Query: 865 NPELGSDATKAQKEEQKKIDESEPLTEEELAEKEELLTQ 903
N ELGSDATK Q+EEQ+KIDE+EPLTEEE+ EKE LL+Q
Sbjct: 61 NTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (313), Expect = 2e-31
Identities = 65/267 (24%), Positives = 109/267 (40%), Gaps = 44/267 (16%)
Query: 28 ERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87
+ ++ + N L + ++ + H A+ +P +AY NLGNV K
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
E A+ Y A+ L P+ + NLA G ++ A+ Y A++ P
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Query: 148 SDLGNLLKALGRLDEAKDL-----------YCVRSDLGNLLKALGRLDEAKNLHTENIKP 196
+L N LK G + EA+D ++L N+ + G ++EA L+ +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK---- 330
Query: 197 VTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALEN 256
A++ P A A+SNL +V +++G+LQEAL +
Sbjct: 331 -----------------------------ALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361
Query: 257 YRHAVRLKPDFIDGYINLAAALVAAGD 283
Y+ A+R+ P F D Y N+ L D
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (281), Expect = 3e-27
Identities = 169/328 (51%), Positives = 204/328 (62%), Gaps = 18/328 (5%)
Query: 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAI 69
G +ELAHREYQAGD+E+AERHCMQLWRQE +NTGVLLLLSSIHFQCR+LD+SAHFSTLAI
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
KQNPLLAEAYSNLGNVYKERGQLQEA+E+YRHA+RLKPDFIDGYINLAAALVAAGDME A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 130 VQAYVTALQYNPDLYCVRSDLGN-----------LLKALGRLDEAKDLYCVRSDLGNLLK 178
VQAYV+ALQYNPDLYCVRSDLGN L ++ + S+LG +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 179 ALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL----ESAHFSTLAIKQNPLLA 234
A G + A + + + + G + A+ +P A
Sbjct: 181 AQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 235 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTA 294
+ NL VY E+G + A++ YR A+ L+P F D Y NLA AL G + +A Y TA
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
Query: 295 LQYNPLLKKEDGWNTEPFVLDFERRKAL 322
L+ P +A+
Sbjct: 298 LRLCPTHADSLNNLANIKREQGNIEEAV 325
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 1e-25
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 23/172 (13%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
E R D++ A+ +P A + NL VY E+G + A++ YR A+ L+P F D
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNP-----------------------SCYLKAIE 658
Y NLA AL G + +A Y TAL+ P Y KA+E
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
P+FA A SNL V QG++ A+ H+++A+ + P F DAY N+GN LKE
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.9 bits (237), Expect = 1e-21
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ L + +A ++ A ++ N+ V L+ ++++ +D + AI+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
P +AY NL N KE+G + EA + Y A+RL P D NLA G++E+AV
Sbjct: 266 LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC-----------VRSDLGNLLKA 179
+ Y AL+ P+ S+L ++L+ G+L EA Y S++GN LK
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
Query: 180 LG 181
+
Sbjct: 386 MQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.3 bits (225), Expect = 4e-20
Identities = 53/411 (12%), Positives = 113/411 (27%), Gaps = 41/411 (9%)
Query: 239 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 298
L + + G + A + R +PD + L++ ++++ A++ N
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 299 PLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKI 358
P +A G + + + +
Sbjct: 64 P-----------------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 106
Query: 359 ECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKI 418
A+ + G V + L+ + + E + +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 419 DFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLH-GIEGAFSGPGGKTVIPGKVVGK 477
+F + + +++L A+ G K
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEK----AVTLDPNFLDAYINLG----NVLKEARI 218
Query: 478 FSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHP------- 530
F + + L + ++ P P
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278
Query: 531 -------NYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL 583
+ A + P ++ E ++++ A++ P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK-REQGNIEEAVRLYRKALEVFPE 337
Query: 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 634
A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.4 bits (215), Expect = 8e-19
Identities = 58/173 (33%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
I+ P A A+SNLG V+ +G++ A+ ++ AV L P+F+D YINL L A ++
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
AV YL+A+ P+ AV NL CV+ QG I LAI + +A+ L P+F
Sbjct: 222 AVA-----------AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Query: 698 LDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNK 750
DAY NL N LKE A + + T D L + + + +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.3 bits (212), Expect = 2e-18
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ + H A+ +P +AY NLGNV KE A+ Y A+ L P+
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ NLA G ++ A+ Y +AIE +P F A+ NL +G +
Sbjct: 240 HGNLACVYYEQGLIDLAID-----------TYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
A + A+ L P D+ NL N+ +E + A L+
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (182), Expect = 1e-14
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
LA+ + G AE R + L L++I + ++++ A++
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125
P A A+SNL +V +++G+LQEAL +Y+ A+R+ P F D Y N+ L D
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (167), Expect = 8e-13
Identities = 61/416 (14%), Positives = 128/416 (30%), Gaps = 36/416 (8%)
Query: 270 GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRG-AL 328
G + LA AGD E A + + + P + L
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEP-----------------DNTGVLLLLSSIH 43
Query: 329 VMMKRPVLGLASAIESISANQEKC-AVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQ 387
+R + +I N A + + A+ +
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103
Query: 388 LVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRW 447
+ ++ + + Q+ + D + + K L +
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
Query: 448 RYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEK-YVLDYLNELWKAR 506
P+ ++ + + ++ + PN + VL +A
Sbjct: 164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223
Query: 507 NSPNKFKAYLLDSGKSW----RTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTF 562
+ + + + E A + ++P ++ L
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-K 282
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
E + ++ A++ P A++ +NL N+ +E+G ++EA+ YR A+ + P+F +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
NLA+ L G +++A+ Y +AI P FA A+SN+G
Sbjct: 343 SNLASVLQQQGKLQEALM-----------HYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.9 bits (154), Expect = 3e-11
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEI 680
G + LA AGD E A + ++ PD L + +
Sbjct: 1 GPMELAHREYQAGDFEAAER-----------HCMQLWRQEPDNTGVLLLLSSIHFQCRRL 49
Query: 681 WLAIHHFEKAVSLDPNFLDAYINLGNVLK 709
+ H A+ +P +AY NLGNV K
Sbjct: 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 1e-10
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
L + + G + A + R +PD + L++ ++++
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAH--------- 54
Query: 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687
AI+ P A A+SNLG V+ +G++ AI H+
Sbjct: 55 --FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.3 bits (142), Expect = 8e-10
Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 27/248 (10%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
++ + + +Q P L +++ + +L + A++ P +
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69
Query: 622 YINLAAAL-----------------------VAAGDMEQAVQAYVTALQYNPSCYLKAIE 658
Y NL + A ++ Y+ A++
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 659 TRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718
PD S+LG + A G + A + KA+ PNF A+ NLG V A
Sbjct: 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 719 TLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGE 778
+ + +D + + + F++ + LR +L V+
Sbjct: 190 H--HFEKAVTLDPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 779 DYREKQKI 786
Y E+ I
Sbjct: 246 VYYEQGLI 253
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.002
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
L G+ A H + +P+ + L ++ + R DR+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS 56
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 3e-25
Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 20/236 (8%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-----------GYINL 116
A + ++ V+ R LQ+ Y+ + ++ + N
Sbjct: 12 AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQ 68
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR-LDEAKDLYCVRSDLGN 175
L + L LL+ L + S LG
Sbjct: 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGI 128
Query: 176 LLKALGRLDEAKNLHTENIKPVTMKVQN--AIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
+ + + + + Y + + A + P
Sbjct: 129 ISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES---YYRHAAQLVPSN 185
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 289
+ Y+ L + +G + Y ++ +K F NL AL A + V+
Sbjct: 186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK 241
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.9 bits (230), Expect = 2e-20
Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 18/196 (9%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+ S LG + ++ ++ + ++L
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTS 169
Query: 637 QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN 696
QA Y A + P ++ L + +++G+ I ++ +++++
Sbjct: 170 QAES-----------YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 697 FLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLG 756
F A NL L +A + S F+ + + +K L
Sbjct: 219 FPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY-----LSKSLEKLSPLR 273
Query: 757 ESSLRDFTLDAPTQSV 772
E F ++
Sbjct: 274 EKLEEQFKELLFQKAF 289
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (217), Expect = 1e-18
Identities = 17/164 (10%), Positives = 37/164 (22%), Gaps = 29/164 (17%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID-----------GYINL 625
A + ++ V+ R LQ+ Y+ + ++ + N
Sbjct: 12 AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQ 68
Query: 626 AAALVAAGDMEQAVQAYVTALQYNP-------------SCYLKAIETRPDFAVAWSNLGC 672
L + V S LG
Sbjct: 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGI 128
Query: 673 VFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDR 716
+ N Q + + S ++LG++ + +
Sbjct: 129 ISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQ 170
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (188), Expect = 4e-15
Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 17/204 (8%)
Query: 495 VLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGG 554
+ L K R +PN+ + S Y + V+NV+ +
Sbjct: 68 QITTLQGQAKNRANPNRSEVQANLSLFLEA---ASGFYTQLLQELCTVFNVDLPCRVKSS 124
Query: 555 SIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL 614
+ I + + + +LG++ + R Q +A YRHA +L
Sbjct: 125 QLGIIS-NKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 615 KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674
P Y LA + GD + Y ++I + F A +NL
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIF-----------YYCRSIAVKFPFPAASTNLQKAL 230
Query: 675 NAQGEIWLAIHHFEKAVSLDPNFL 698
+ E + F+
Sbjct: 231 SKALESRDEVKTKWGVSDFIKAFI 254
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.2 bits (184), Expect = 1e-14
Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 2/150 (1%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
E +G Y + ++ + L I + + +
Sbjct: 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
+LG++ + R Q +A YRHA +L P Y LA + GD + Y
Sbjct: 152 --QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEA 163
++ ++L L +
Sbjct: 210 CRSIAVKFPFPAASTNLQKALSKALESRDE 239
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 2e-14
Identities = 19/182 (10%), Positives = 43/182 (23%), Gaps = 12/182 (6%)
Query: 128 QAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA--------KDLYCVRSDLGNLLKA 179
Q+ Q A D+ + + + L + + + +L
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNH 63
Query: 180 LGR--LDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY 237
+ + + P +VQ + + +
Sbjct: 64 AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS 123
Query: 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQY 297
S LG + ++ ++ + ++L QA Y A Q
Sbjct: 124 SQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 298 NP 299
P
Sbjct: 182 VP 183
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 2e-10
Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 27/139 (19%)
Query: 603 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPS----------- 651
++ + R A LK D D + A + ++ Y L +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDL 60
Query: 652 ---CYLKAIET----------RPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698
+ I T V + + A G + ++D
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 699 DAYINLGNVLKEARIFDRA 717
LG + +
Sbjct: 121 VKSSQLGIISNKQTHTSAI 139
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 3e-09
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 14/101 (13%)
Query: 217 LESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID------- 269
L+SA + A + ++ V+ R LQ+ Y+ + ++
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59
Query: 270 ----GYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDG 306
+ N L + L+ G
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASG 100
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 1e-08
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 2/121 (1%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+L + + + L+ L I + ++ + A +
Sbjct: 123 SSQLGIISNKQTHTSAIVKPQSSS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ 180
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
P + Y+ L + +G + Y ++ +K F NL AL A + V
Sbjct: 181 LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV 240
Query: 131 Q 131
+
Sbjct: 241 K 241
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 77.2 bits (188), Expect = 3e-16
Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 14/221 (6%)
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQ 131
+ A+ G +Y G A ++ A+ ++PD + + L L AG+ + A +
Sbjct: 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92
Query: 132 AYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGNLLKAL 180
A+ + L+ +P + G L GR A+D L + L
Sbjct: 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL 152
Query: 181 GRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL---ESAHFSTLAIKQNPLLAEAY 237
+ L K + IV Y G +T L+E
Sbjct: 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212
Query: 238 SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
LG Y G L A ++ AV + L
Sbjct: 213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 29/243 (11%), Positives = 63/243 (25%), Gaps = 17/243 (6%)
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
++ +LA ++++ L + + + G A
Sbjct: 1 KSEVLAVPLQPTLQQEVILARMEQILASRA---LTDDERAQLLYERGVLYDSLGLRALAR 57
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDE-----------AKDLYCVRSDLGNLLKA 179
+ AL PD+ V + LG L G D + G L
Sbjct: 58 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHF---STLAIKQNPLLAEA 236
GR A++ + ++ +K ++ +
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 237 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 296
E+ ++ + L + L ++ GD++ A + A+
Sbjct: 178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237
Query: 297 YNP 299
N
Sbjct: 238 NNV 240
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 15/107 (14%), Positives = 32/107 (29%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
LA ++ + + + +E ++ + +++ +T
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 120
L+E LG Y G L A ++ AV + L
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 11/53 (20%), Positives = 15/53 (28%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629
L+E LG Y G L A ++ AV + L
Sbjct: 201 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 15/146 (10%), Positives = 37/146 (25%), Gaps = 25/146 (17%)
Query: 588 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 647
+ N G G+ + A ++ + P+ + L A + + +
Sbjct: 108 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167
Query: 648 YNPSC-------------------------YLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682
+ + LG + + G++
Sbjct: 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227
Query: 683 AIHHFEKAVSLDPNFLDAYINLGNVL 708
A F+ AV+ + + + L
Sbjct: 228 ATALFKLAVANNVHNFVEHRYALLEL 253
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (102), Expect = 4e-05
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 7/200 (3%)
Query: 625 LAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAI 684
LA L E + L T + A G ++++ G LA
Sbjct: 5 LAVPLQPTLQQEVILARMEQILA-------SRALTDDERAQLLYERGVLYDSLGLRALAR 57
Query: 685 HHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744
+ F +A+++ P+ + + LG L +A FD A F T +
Sbjct: 58 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117
Query: 745 TEELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDYREKQKIVPIGHWIEPPKRERKANY 804
+ L D + +Y E + ++ K V H+ + K + N
Sbjct: 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI 177
Query: 805 AVDAYFKEALRTSEPKAPKA 824
+ +T +
Sbjct: 178 VEFYLGNISEQTLMERLKAD 197
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 11/74 (14%), Positives = 24/74 (32%)
Query: 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYC 145
E+ ++ + L + L ++ GD++ A + A+ N +
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Query: 146 VRSDLGNLLKALGR 159
L LG+
Sbjct: 245 EHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (87), Expect = 0.003
Identities = 9/85 (10%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
Query: 595 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYL 654
E+ ++ + L + L ++ GD++ A +
Sbjct: 185 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA-----------LFK 233
Query: 655 KAIETRPDFAVAWSNLGCVFNAQGE 679
A+ V + G+
Sbjct: 234 LAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 75.5 bits (185), Expect = 2e-15
Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 10/140 (7%)
Query: 566 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 625
+L ++ AIK +P A S+ + G + A E +++L P+++ G L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
+ AA + Q + + + +
Sbjct: 71 RHLVKAAQARKDFAQGA----------ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 686 HFEKAVSLDPNFLDAYINLG 705
+ L +
Sbjct: 121 LALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 70.1 bits (171), Expect = 8e-14
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147
GQLQ+ALE A++ P + L GD E+A + + +++ P+
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 148 SDLGNLLKALGRLDEAKDLYCVRSDL------------GNLLKALGRLDEAKNLHTE 192
S L +L+KA + L NL ++ L +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 68.9 bits (168), Expect = 2e-13
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Query: 57 KLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 116
+L ++ AIK +P A S+ + G + A E +++L P+++ G L
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70
Query: 117 AAALVAAGDMEQAVQAYVTALQ-YNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ AA + Q TA + NL ++ +L
Sbjct: 71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 67.0 bits (163), Expect = 9e-13
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 12/126 (9%)
Query: 597 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKA 656
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--- 64
Query: 657 IETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD-PNFLDAYINLGNVLKEARIFD 715
S L + A A L L + N+ ++ ++
Sbjct: 65 --------PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 116
Query: 716 RANTLF 721
+ + L
Sbjct: 117 QVSELA 122
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 62.0 bits (150), Expect = 5e-11
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
AIK +P A S+ + G + A E +++L P+++ G L + AA +
Sbjct: 22 AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK 81
Query: 286 QAVQAYVTALQ 296
Q TA
Sbjct: 82 DFAQGAATAKV 92
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.2 bits (148), Expect = 8e-11
Identities = 22/178 (12%), Positives = 49/178 (27%), Gaps = 43/178 (24%)
Query: 117 AAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY--------- 167
++ G ++QA++ + A++ +P +RS LL G + A +
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 168 --CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225
S L +L+KA + + +T
Sbjct: 63 YLPGASQLRHLVKAAQARKDF--------------------------------AQGAATA 90
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 283
+ N+ ++ E L+ + + + + V D
Sbjct: 91 KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 55.0 bits (132), Expect = 9e-09
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 246 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
GQLQ+ALE A++ P + L GD E+A + + +++ P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 54.3 bits (130), Expect = 2e-08
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 626 AAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685
++ G ++QA++ ++AI+ P A S+ + G+ A
Sbjct: 3 WKNALSEGQLQQALEL-----------LIEAIKASPKDASLRSSFIELLCIDGDFERADE 51
Query: 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
+++ L P +L L +++K A+
Sbjct: 52 QLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.4 bits (184), Expect = 3e-15
Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 24/260 (9%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DM 126
I + + Y V + + + A + R A+ L + L + D+
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY-----------CVRSDLGN 175
+ + ++ P Y V L++ L + +
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154
Query: 176 LLKALGRLDEAK-------NLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+++ D N + + ++ IK
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214
Query: 229 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV----AAGDM 284
P A++ L + ++RG L + + L+P Y+ +
Sbjct: 215 LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273
Query: 285 EQAVQAYVTALQYNPLLKKE 304
+ AL+ +L KE
Sbjct: 274 DNKEDILNKALELCEILAKE 293
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (150), Expect = 7e-11
Identities = 32/226 (14%), Positives = 61/226 (26%), Gaps = 20/226 (8%)
Query: 93 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGN 152
Q N + F D Y A L E+A + A++ N Y V
Sbjct: 26 QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV 85
Query: 153 LLKALGR-LDEAKDLYCVRSDL--------GNLLKALGRLDEAKNLHTENIKPVTMKVQN 203
LLK+L + L E + + + + L + + +N
Sbjct: 86 LLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 145
Query: 204 AIVCNYGGRKPTTLESAHFST----LAIKQNPLLAEAYSNLGNVYKE------RGQLQEA 253
+ + +K++ ++ V R L+
Sbjct: 146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE 205
Query: 254 LENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
++ ++L P + L L G + + L P
Sbjct: 206 VQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.5 bits (148), Expect = 1e-10
Identities = 17/176 (9%), Positives = 43/176 (24%), Gaps = 24/176 (13%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DM 635
I + + Y V + + + A + R A+ L + L + D+
Sbjct: 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94
Query: 636 EQAVQAYVTALQYNPSC-----------------------YLKAIETRPDFAVAWSNLGC 672
+ + ++ P + AW +
Sbjct: 95 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154
Query: 673 VFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFM 728
V + + ++ + D + V+ ++ L Y +
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 210
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 12/131 (9%)
Query: 602 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRP 661
Q N + F D Y A L E+A + AIE
Sbjct: 26 QNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFK-----------LTRDAIELNA 74
Query: 662 DFAVAWSNLGCVFNAQGEIWL-AIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTL 720
W + + + +++ + P + + +++ R +
Sbjct: 75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134
Query: 721 FYVSSYFMITD 731
+
Sbjct: 135 IADILNQDAKN 145
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (180), Expect = 9e-15
Identities = 54/286 (18%), Positives = 87/286 (30%), Gaps = 40/286 (13%)
Query: 51 IHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 110
Q L + A++Q+P EA+ LG E Q A+ R + LKPD
Sbjct: 28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 87
Query: 111 DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNL---------------LK 155
+ LA + QA + L+Y P + + L
Sbjct: 88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147
Query: 156 ALGRLDEAKDLY-------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQ 202
+ E K+L+ V+ LG L G D+A + T +
Sbjct: 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 207
Query: 203 NAIVCNYGGRKPTTLESAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV 261
E A + A++ P + NLG G +EA+E++ A+
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267
Query: 262 RLKPDFIDG-----------YINLAAALVAAGDMEQAVQAYVTALQ 296
++ + L AL G + A L
Sbjct: 268 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 1e-13
Identities = 46/261 (17%), Positives = 80/261 (30%), Gaps = 32/261 (12%)
Query: 70 KQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 128
++NPL G + G L A+ + AV+ P ++ + L
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 71
Query: 129 AVQAYVTALQYNPDLYCVRS---------------------------DLGNLLKALGRLD 161
A+ A L+ PD +L+
Sbjct: 72 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131
Query: 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAH 221
L + LG+LL E K L ++ + + C G + E
Sbjct: 132 GGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 190
Query: 222 FSTLAIKQNPLLAE---AYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 278
+ ++ LG Q +EA+ YR A+ L+P +I NL +
Sbjct: 191 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 250
Query: 279 VAAGDMEQAVQAYVTALQYNP 299
+ G +AV+ ++ AL
Sbjct: 251 INLGAHREAVEHFLEALNMQR 271
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 25/168 (14%)
Query: 14 LAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP 73
L +G+Y+ A N+ + L + + +++ A++ P
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 133
+ NLG G +EA+E++ A+ ++ A
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS-------- 289
Query: 134 VTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALG 181
L L LG+ D DL LL G
Sbjct: 290 ---------------TLRLALSMLGQSDAYGAAD--ARDLSTLLTMFG 320
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 1e-08
Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 579 KQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
++NPL G + G L A+ + AV+ P ++ + L
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 71
Query: 638 AVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697
A+ + +E +PD A L F + A + P +
Sbjct: 72 AIS-----------ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 120
Query: 698 LDAYINLGN 706
Sbjct: 121 AHLVTPAEE 129
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 8/155 (5%)
Query: 228 KQNPLL-AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 286
++NPL G + G L A+ + AV+ P ++ + L
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 71
Query: 287 AVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESIS 346
A+ A L+ P N + + + R L A +
Sbjct: 72 AISALRRCLELKP-------DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 124
Query: 347 ANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDL 381
E+ A + + + L S L E
Sbjct: 125 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 159
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (120), Expect = 3e-07
Identities = 22/100 (22%), Positives = 37/100 (37%)
Query: 593 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC 652
Q +EA+ YR A+ L+P +I NL + + G +AV+ ++ AL
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273
Query: 653 YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
E WS L + G+ + +S
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 8/201 (3%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ L + A++Q+P EA+ LG E Q A+ R + LKPD
Sbjct: 30 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA 89
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCY-----LKAIETRPDFAVAWSNLGCVFNA 676
+ LA + QA + L+Y P+ + + LG + +
Sbjct: 90 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS- 148
Query: 677 QGEIWLAIHHFEKAVSL--DPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDI 734
F AV L D LG + + +D+A F + D +
Sbjct: 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 208
Query: 735 DVILERCEAKTEELNKKFEQL 755
L A + +
Sbjct: 209 WNKLGATLANGNQSEEAVAAY 229
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-05
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNV 707
+ Y +A+E +P + + NLG G A+ HF +A+++ G +
Sbjct: 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG-----------YINLAA 627
+ P + NLG G +EA+E++ A+ ++ + L
Sbjct: 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 293
Query: 628 ALVAAGDMEQAVQAYVTALQ 647
AL G + A L
Sbjct: 294 ALSMLGQSDAYGAADARDLS 313
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 669 NLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
G +G++ A+ FE AV DP ++A+ LG E A +
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 7e-14
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN--FLDAYI 702
A++ E A A++ +G + + + AIH + K+++ L
Sbjct: 64 AIEVGRENR----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
Query: 703 NLGNVLKE 710
+LKE
Sbjct: 120 QAEKILKE 127
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (135), Expect = 4e-10
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 136 ALQYNPD-------LYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
A++ + + + +GN + +A Y L + +A+
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123
Query: 189 LHTE 192
+ E
Sbjct: 124 ILKE 127
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 1e-05
Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 13 ELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQN 72
EL + Y+ D+++A +H + + N + ++++F+ +K AI+
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 73 P-------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 108
+A+AY+ +GN Y + + ++A+ Y ++
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A LGN ++ AL++Y A L P + N AA GD + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 294 ALQYNP 299
A++
Sbjct: 64 AIEVGR 69
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIK---PVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIK 228
+LGN D A + + + + N + + +
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 229 QN-----PLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
+ +A+AY+ +GN Y + + ++A+ Y ++
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.0 bits (170), Expect = 3e-13
Identities = 29/254 (11%), Positives = 63/254 (24%), Gaps = 11/254 (4%)
Query: 45 LLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ--LQEALENYRHA 102
L S + F ++ NP + + + + LE
Sbjct: 76 LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135
Query: 103 VRLKPDFIDGYINLAA-ALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161
+ + A AA + + + + N Y LL L
Sbjct: 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195
Query: 162 EAKDLYCVRSDLG----NLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
++ + ++ L++ D + + + + C K T L
Sbjct: 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVL 255
Query: 218 ----ESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 273
ES +N L +E L+ + + P +
Sbjct: 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315
Query: 274 LAAALVAAGDMEQA 287
L + + + +
Sbjct: 316 LRSKFLLENSVLKM 329
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.6 bits (169), Expect = 3e-13
Identities = 24/266 (9%), Positives = 64/266 (24%), Gaps = 27/266 (10%)
Query: 59 DKSAHFSTLAIKQNPLLAEAY----------SNLGNVYKERGQLQEALENYRHAVRLKPD 108
+ ++ + NP A + + + ++ L +R+ P
Sbjct: 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 105
Query: 109 FIDGYINLAAALVAAG--DMEQAVQAYVTALQYNPDLY--------CVRSDLGNLLKALG 158
+ + L + + ++ L+ + + + L
Sbjct: 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165
Query: 159 RLDEAKDLYCVRSD----LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKP 214
D LL L ++ + +++ +
Sbjct: 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225
Query: 215 TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274
+SA F + E+ + + + I L
Sbjct: 226 ---QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 282
Query: 275 AAALVAAGDMEQAVQAYVTALQYNPL 300
AL ++ +Q + T +P+
Sbjct: 283 MRALDPLLYEKETLQYFSTLKAVDPM 308
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.6 bits (130), Expect = 2e-08
Identities = 10/165 (6%), Positives = 26/165 (15%), Gaps = 20/165 (12%)
Query: 577 AIKQNPLLAEAYSNL-GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM 635
++ + + + E L + + + L
Sbjct: 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194
Query: 636 EQAVQAYVTALQYNPS-------------------CYLKAIETRPDFAVAWSNLGCVFNA 676
+ Y + + R +
Sbjct: 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV 254
Query: 677 QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLF 721
+ ++ + L I L L F
Sbjct: 255 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 2e-07
Identities = 11/118 (9%), Positives = 27/118 (22%)
Query: 12 LELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQ 71
LEL + + + + L + +S +
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271
Query: 72 NPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
N L +E L+ + + P +L + + + +
Sbjct: 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 329
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 2e-07
Identities = 16/148 (10%), Positives = 36/148 (24%), Gaps = 7/148 (4%)
Query: 19 YQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEA 78
Q + ++ D+SA F +
Sbjct: 189 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN----DQSAWFYHRWLLGRAEPLFR 244
Query: 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQ 138
E+ + + + I L AL ++ +Q + T
Sbjct: 245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304
Query: 139 YNPDLYCVRSDLGNLL---KALGRLDEA 163
+P DL + ++ +++ A
Sbjct: 305 VDPMRAAYLDDLRSKFLLENSVLKMEYA 332
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.2 bits (121), Expect = 3e-07
Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 29/215 (13%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA------- 122
++ L A + + + LE + PDF + L
Sbjct: 23 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSP 82
Query: 123 ---AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKA 179
A ++ + + L+ NP Y LL L + A++L
Sbjct: 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC---------- 132
Query: 180 LGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSN 239
A+ L + + + L F+ I +N ++
Sbjct: 133 ------ARFLEADERNFHCWDYRRFVAAQAAVAPAEELA---FTDSLITRNFSNYSSWHY 183
Query: 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274
+ + ++ R + ++ N
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 9e-07
Identities = 13/155 (8%), Positives = 37/155 (23%), Gaps = 19/155 (12%)
Query: 573 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL------- 625
F+ I +N ++ + + ++ R + ++ N
Sbjct: 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225
Query: 626 -AAALVAAGDMEQAVQAYVTALQYN-----------PSCYLKAIETRPDFAVAWSNLGCV 673
+A + +A + L + + L
Sbjct: 226 QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 285
Query: 674 FNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVL 708
+ + +F ++DP +L +
Sbjct: 286 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 568 DKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 627
D+SA F + E+ + + + I L
Sbjct: 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 284
Query: 628 ALVAAGDMEQAVQAYVTALQYNP--SCYLKAIETR 660
AL ++ +Q + T +P + YL + ++
Sbjct: 285 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 319
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.1 bits (113), Expect = 3e-06
Identities = 24/253 (9%), Positives = 64/253 (25%), Gaps = 38/253 (15%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA------- 631
++ L A + + + LE + PDF + L
Sbjct: 23 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSP 82
Query: 632 ---AGDMEQAVQAYVTALQYNPS-------------------------CYLKAIETRPDF 663
A ++ + + L+ NP + +E
Sbjct: 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 142
Query: 664 A-VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
A + + ++ + + ++ +L + +
Sbjct: 143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202
Query: 723 VSSYFMITDEDIDVILERCEAKTE--ELNKKFEQLGESSLRDFTLDAPTQSVYKFEGEDY 780
+ ++ + ++ + + ++ L L +V + E E
Sbjct: 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262
Query: 781 REKQKIVPIGHWI 793
+E Q++ P W
Sbjct: 263 KELQELEPENKWC 275
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.8 bits (102), Expect = 6e-05
Identities = 6/62 (9%), Positives = 16/62 (25%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 636
+N L +E L+ + + P +L + + +
Sbjct: 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 327
Query: 637 QA 638
+
Sbjct: 328 KM 329
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 65.9 bits (159), Expect = 3e-13
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 14/142 (9%)
Query: 584 LAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------YINLAAAL 629
+ AY L G+ EA N R A+ + + LA AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEK 689
++A+ + AL Y + + A + + G A+ F+K
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 690 AVSLDPNFLDAYINLGNVLKEA 711
V + +++ A
Sbjct: 126 VVEMIEERKGETPGKERMMEVA 147
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 14/101 (13%)
Query: 233 LAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------YINLAAAL 278
+ AY L G+ EA N R A+ + + LA AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 279 VAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERR 319
++A+ + AL Y + + + ++ R
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSR 106
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 75 LAEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDFIDG------------YINLAAAL 120
+ AY L G+ EA N R A+ + + LA AL
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 121 VAAGDMEQAVQAYVTALQYNPDLYC 145
++A+ + AL Y
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGE 90
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.1 bits (160), Expect = 7e-13
Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 13/176 (7%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
A+ GN + EA Y A+ P Y N +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-----------ALCYLKMQ 52
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
+ + +A+E A LG AI + ++A SL + +
Sbjct: 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112
Query: 705 GNVLKEARIFDRANTLFYVSSYFMITDED--IDVILERCEAKTEELNKKFEQLGES 758
R N++ + +I E + EE + E +
Sbjct: 113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD 168
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.5 bits (148), Expect = 3e-11
Identities = 22/193 (11%), Positives = 63/193 (32%), Gaps = 5/193 (2%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L E +R + Y A + + + + + ++ +++ A++
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ +A+ LG E EA+ N + A L + + + + + ++
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126
Query: 131 QAYVTALQYNPDL--YCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKN 188
+ +L Y R + L + + D G++ ++ +
Sbjct: 127 SIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGH---EDDGHIRAQQACIEAKHD 183
Query: 189 LHTENIKPVTMKV 201
+ ++ + +V
Sbjct: 184 KYMADMDELFSQV 196
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.9 bits (136), Expect = 1e-09
Identities = 31/188 (16%), Positives = 57/188 (30%), Gaps = 12/188 (6%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY------CVRSDLGNLLKALGRLDEAKNL 189
AL+ + LG + DEA L L AK
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 249
+I+ + ++ + T A +++ E + + G++ ++
Sbjct: 124 RWNSIEERRIHQESEL------HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177
Query: 250 LQEALENY 257
++ + Y
Sbjct: 178 IEAKHDKY 185
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.1 bits (134), Expect = 2e-09
Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 12/196 (6%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
F RK ++A AI +NPL+A Y+N Y + Q ++AL + R A+ L +
Sbjct: 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+ L + ++A+ +A + + + + +
Sbjct: 75 HFFLGQCQLEMESYDEAIA-----------NLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERC 741
+ E+ + L +Y+ + R + I +
Sbjct: 124 RW-NSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182
Query: 742 EAKTEELNKKFEQLGE 757
+ ++++ F Q+ E
Sbjct: 183 DKYMADMDELFSQVDE 198
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 7/115 (6%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIV----CNYGGRKPTTLESAHFSTLAI 227
+ GN L + EA + I A+ + ++ A+
Sbjct: 9 EQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
Query: 228 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282
+ + +A+ LG E EA+ N + A L + + + + +
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285
AI +NPL+A Y+N Y + Q ++AL + R A+ L + + L + +
Sbjct: 30 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYD 89
Query: 286 QAVQAYVTALQYNP 299
+A+ A
Sbjct: 90 EAIANLQRAYSLAK 103
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 16/66 (24%), Positives = 23/66 (34%)
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 293
A+ GN + EA Y A+ P Y N A + EQA+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 294 ALQYNP 299
AL+ +
Sbjct: 64 ALELDG 69
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.7 bits (146), Expect = 3e-11
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 4/151 (2%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA----LVA 631
+ K+ A G VY + G+ +A+ Y V + A L+A
Sbjct: 6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
A + C KA+ G E A FEK +
Sbjct: 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125
Query: 692 SLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
++P A + + K+A+ + + Y
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTY 156
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 48.8 bits (115), Expect = 3e-07
Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 20/158 (12%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ E ++ G Y A ++ G+ +
Sbjct: 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-------------------SEKESKA 58
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
L A+ NL Y + + +A+E A+ L G A + + E A
Sbjct: 59 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK 118
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA-KDLY 167
+ L+ NP R + K +E + Y
Sbjct: 119 GDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY 156
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 45.3 bits (106), Expect = 6e-06
Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 26/146 (17%)
Query: 67 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL---------------KPDFID 111
+ K+ A G VY + G+ +A+ Y V + +
Sbjct: 6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65
Query: 112 GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC--- 168
++NLA + + +AV+ AL + G + + AK +
Sbjct: 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125
Query: 169 --------VRSDLGNLLKALGRLDEA 186
R + K +E
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 12/139 (8%), Positives = 35/139 (25%), Gaps = 7/139 (5%)
Query: 149 DLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCN 208
+ G + G+ +A Y L G ++ + + + +
Sbjct: 20 EKGTVYFKGGKYVQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 77
Query: 209 YGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFI 268
K A+ + + G + + A ++ + + P
Sbjct: 78 REYTKAV-----ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 269 DGYINLAAALVAAGDMEQA 287
+ + A + +
Sbjct: 133 AARLQIFMCQKKAKEHNER 151
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 1/119 (0%)
Query: 182 RLDEAKNLHTE-NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNL 240
+L++A + + + K A++ +E + L A+ NL
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 70
Query: 241 GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299
Y + + +A+E A+ L G A + + E A + L+ NP
Sbjct: 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (141), Expect = 5e-11
Identities = 12/120 (10%), Positives = 27/120 (22%), Gaps = 6/120 (5%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649
+ N L + + ++ A LV + +
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGI------V 57
Query: 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709
L ++ + L E A+ + + +P A + K
Sbjct: 58 LLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 6e-05
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 68 AIKQNPLLAEA---YSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVA 122
+ Y+ + +++ + + K + D LA
Sbjct: 25 EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84
Query: 123 AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
+ E+A++ LQ P + + KA+ +
Sbjct: 85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 6/111 (5%)
Query: 172 DLGNLLKALGRLDEAKNLHTENIK------PVTMKVQNAIVCNYGGRKPTTLESAHFSTL 225
+ N L ++ L + + + +V L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276
+ L + ++AL+ R ++ +P
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 9/96 (9%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLA 683
+ LV+ D+ + + + + ++ +I
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS--------KSTQFEYAWCLVRTRYNDDIRKG 55
Query: 684 IHHFEKAVSLDPN--FLDAYINLGNVLKEARIFDRA 717
I E+ + D L + +++A
Sbjct: 56 IVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 91
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.001
Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 5/111 (4%)
Query: 13 ELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSA-----HFSTL 67
+ + D E+ + + + + R D L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 118
+ L + ++AL+ R ++ +P
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.002
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 226 AIKQNPLLAEA---YSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVA 280
+ Y+ + +++ + + K + D LA
Sbjct: 25 EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84
Query: 281 AGDMEQAVQAYVTALQYNP 299
+ E+A++ LQ P
Sbjct: 85 LKEYEKALKYVRGLLQTEP 103
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 11/107 (10%), Positives = 27/107 (25%), Gaps = 16/107 (14%)
Query: 577 AIKQNPLLAEA---YSNLGNVYKERGQLQEALENYRHAVRL--KPDFIDGYINLAAALVA 631
+ Y+ + +++ + + K + D LA
Sbjct: 25 EKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQG 678
+ E+A++ ++T P A + A
Sbjct: 85 LKEYEKALK-----------YVRGLLQTEPQNNQAKELERLIDKAMK 120
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (143), Expect = 1e-10
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 45/223 (20%)
Query: 75 LAEAYS--NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 132
L EA S N G + ++ + AL+ + ++ N+ +M +A +A
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKA 58
Query: 133 YVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTE 192
+ ++ + L G L + D A +AL +L + + +
Sbjct: 59 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK---------EALIQLRGNQLIDYK 109
Query: 193 NIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252
L ++ E N+ +Y ++ + ++
Sbjct: 110 I-------------------------------LGLQFKLFACEVLYNIAFMYAKKEEWKK 138
Query: 253 ALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 295
A E A +K + I+ A V + + V V L
Sbjct: 139 AEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 1e-10
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 5/130 (3%)
Query: 579 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 638
+ N+G +Y + EA + + ++ Y + A
Sbjct: 30 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 639 VQAYVTALQYNPSCYL-----KAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693
++ AL L ++ + N+ ++ + E A A S+
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 694 DPNFLDAYIN 703
+ I+
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (122), Expect = 6e-08
Identities = 25/186 (13%), Positives = 63/186 (33%), Gaps = 24/186 (12%)
Query: 9 IGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLA 68
I L D++ A + + ++ + + ++ + + ++ T +
Sbjct: 6 ISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRS 62
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL----------------KPDFIDG 112
I ++ LA AY G +Y + + A+++ + A+ K +
Sbjct: 63 INRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 122
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172
N+A + ++A + A + + KA+ + + K V
Sbjct: 123 LYNIAFMYAKKEEWKKAEEQLALATSMKSE-----PRHSKIDKAMECVWKQKLYEPVVIP 177
Query: 173 LGNLLK 178
+G L +
Sbjct: 178 VGRLFR 183
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 8e-07
Identities = 17/162 (10%), Positives = 40/162 (24%), Gaps = 28/162 (17%)
Query: 70 KQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQA 129
+ N+G +Y + EA + + ++ Y + A
Sbjct: 30 AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 130 VQAYVTALQYNP----------------DLYCVRSDLGNLLKALGRLDEAKDLY------ 167
++ AL V ++ + +A++
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENI------KPVTMKVQN 203
+ KA+ + + K I +P +V
Sbjct: 150 KSEPRHSKIDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQ 191
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 2e-05
Identities = 14/95 (14%), Positives = 34/95 (35%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ ++ + L ++ E N+ +Y ++ + ++A E A +K +
Sbjct: 98 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSK 157
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657
I+ A V + + V V L + +
Sbjct: 158 IDKAMECVWKQKLYEPVVIPVGRLFRPNERQVAQL 192
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 4e-05
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 63 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 122
+ L ++ E N+ +Y ++ + ++A E A +K + I+ A V
Sbjct: 107 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
Query: 123 AGDMEQAVQAYVTALQYNPD 142
+ + V V L + P+
Sbjct: 167 KQKLYEPVVIPVGRL-FRPN 185
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 8e-04
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 233 LAEAYS--NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQA 290
L EA S N G + ++ + AL+ + ++ N+ +M +A +A
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKA 58
Query: 291 YVTALQYNPLLKKEDGWNTEPFVLDFERRKAL 322
+ ++ + L + + A+
Sbjct: 59 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (141), Expect = 6e-10
Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 22/247 (8%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 129
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 130 VQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNL 189
V + A+Q R + + +DL + KA+ + A
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFEL---------GEILENDLHDYAKAIDCYELAGEW 147
Query: 190 HTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL-------LAEAYSNLGN 242
+ ++ + +E++ + IK + L + + G
Sbjct: 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL 207
Query: 243 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302
A + P+F D + + E + +
Sbjct: 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267
Query: 303 KEDGWNT 309
+ D W
Sbjct: 268 RLDKWKI 274
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (120), Expect = 3e-07
Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 16/149 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAALVAAGDMEQA 638
A+ +Y+ R +L A +++ A + + + Y+ + G+ A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 639 VQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-- 696
V + + + + R + + N + AI +E A
Sbjct: 97 VDSL----ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152
Query: 697 ----FLDAYINLGNVLKEARIFDRANTLF 721
+I ++ + A+ ++
Sbjct: 153 SVALSNKCFIKCADLKALDGQYIEASDIY 181
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 12/138 (8%), Positives = 36/138 (26%), Gaps = 2/138 (1%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQ 637
Y +K G A+++ +A+++ +E
Sbjct: 70 AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129
Query: 638 AVQAYVTALQYNP--SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDP 695
+ Y A+ + ++ + + G+ A + K +
Sbjct: 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189
Query: 696 NFLDAYINLGNVLKEARI 713
+ +L + + +
Sbjct: 190 GNRLSQWSLKDYFLKKGL 207
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 11/156 (7%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622
+ + A + L + + ++ GQ EA + Y ++
Sbjct: 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSN--LGCVFNA---- 676
+L + G + A V A + + P+FA + + L + +A
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAAR----TLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251
Query: 677 -QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEA 711
++ F+ + LD + + +++
Sbjct: 252 DSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 287
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 16/143 (11%)
Query: 54 QCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR-------LK 106
+ + A + L + + ++ GQ EA + Y ++ +
Sbjct: 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
Query: 107 PDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDL 166
D ++ +AA D A + +P+ R L L +A +
Sbjct: 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-----SNFLKSLIDAVNE 250
Query: 167 YCVRSDLGNLLKALGRLDEAKNL 189
D L + D L
Sbjct: 251 G----DSEQLSEHCKEFDNFMRL 269
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.2 bits (134), Expect = 1e-09
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 27/161 (16%)
Query: 578 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA----------------VRLKPDFIDG 621
+ + L++E N+GN + + + A++ Y +L+P +
Sbjct: 20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 79
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIW 681
+N+ A + D + AV + + AL+ +PS + E
Sbjct: 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA-----------LYRRAQGWQGLKEYD 128
Query: 682 LAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFY 722
A+ +KA + P L V ++ + Y
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.2 bits (121), Expect = 6e-08
Identities = 20/158 (12%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L + + +++ ++E A + ++ + + ++A K
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVL------------------RYVEGSRAAAEDADGAK 71
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
P+ N+G + Q A+++ A+ + P A + +QA+
Sbjct: 72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 131
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA-KDLY 167
A + P+ ++++L + + + + K Y
Sbjct: 132 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 27/145 (18%)
Query: 69 IKQNPLLAEAYSNLGNVYKERGQLQEALENYRHA----------------VRLKPDFIDG 112
+ + L++E N+GN + + + A++ Y +L+P +
Sbjct: 20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 79
Query: 113 YINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC---- 168
+N+ A + D + AV + + AL+ +P + L D+A
Sbjct: 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139
Query: 169 -------VRSDLGNLLKALGRLDEA 186
++++L + + + +
Sbjct: 140 IAPEDKAIQAELLKVKQKIKAQKDK 164
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/167 (13%), Positives = 45/167 (26%), Gaps = 10/167 (5%)
Query: 125 DMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLD 184
D + ++ L + DL ++GN + A Y +A
Sbjct: 12 DADVDLKDVDKILLISEDLK----NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67
Query: 185 EAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVY 244
+ L + V N C + L I + +A +
Sbjct: 68 DGAKLQPVALSCV----LNIGACKLKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGW 121
Query: 245 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAY 291
+ + +AL + + A + P+ L + +A
Sbjct: 122 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.1 bits (87), Expect = 0.001
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 11/118 (9%)
Query: 562 FECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG 621
+ ++A K P+ N+G + Q A+++ A+ + P
Sbjct: 54 LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 113
Query: 622 YINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
A + +QA+ KA E P+ + L V
Sbjct: 114 LYRRAQGWQGLKEYDQALA-----------DLKKAQEIAPEDKAIQAELLKVKQKIKA 160
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.002
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 17/145 (11%)
Query: 155 KALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKP 214
L +D+ + ++GN + A +T+ ++ V
Sbjct: 15 VDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------------- 59
Query: 215 TTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINL 274
+A K P+ N+G + Q A+++ A+ + P
Sbjct: 60 --SRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR 117
Query: 275 AAALVAAGDMEQAVQAYVTALQYNP 299
A + +QA+ A + P
Sbjct: 118 AQGWQGLKEYDQALADLKKAQEIAP 142
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 39/279 (13%), Positives = 73/279 (26%), Gaps = 47/279 (16%)
Query: 68 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVA 122
I+++ + AE + V G EA + A+ P I L L
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 123 AGDMEQAVQAYVTALQYN------PDLYCVRSDLGNLLKALGRLDEAKDLYC-------- 168
G++ +++ Q +L A G L A +
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 169 -----------VRSDLGNLLKALGRLDEAKNLHTENIKP-------------VTMKVQNA 204
+ LL A RLDEA+ I+ + +
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 183
Query: 205 IVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLK 264
+ + + + ++ A ++ G A RH + +
Sbjct: 184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243
Query: 265 PDFIDG----YINLAAALVAAGDMEQAVQAYVTALQYNP 299
+ N+A A + G+ E A +
Sbjct: 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 282
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 49/318 (15%), Positives = 93/318 (29%), Gaps = 53/318 (16%)
Query: 32 MQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNP-----LLAEAYSNLGNVY 86
++ R++T + L + + D++ + LA+++ P A S LG V
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 61
Query: 87 KERGQLQEALENYRHAVRLKPDFID------GYINLAAALVAAGDMEQAVQAYVTALQYN 140
+G+L +L + ++ I + L A G ++ A + A Q
Sbjct: 62 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121
Query: 141 PDLY--------CVRSDLGNLLKALGRLDEAKDLY------CVRSDLGNLLKALGRLDEA 186
+ + + LL A RLDEA+ L+ L L +
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181
Query: 187 KNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFS----------------------T 224
+ + + + G + +A+
Sbjct: 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 241
Query: 225 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV------RLKPDFIDGYINLAAAL 278
N L + N+ G+ + A RL D + L
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 279 VAAGDMEQAVQAYVTALQ 296
AG A + + AL+
Sbjct: 302 WQAGRKSDAQRVLLDALK 319
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 54.2 bits (128), Expect = 3e-08
Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 10/130 (7%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-----FIDGYINLAAALVA 631
I+++ + AE + V G EA + A+ P I L L
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 632 AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 691
G++ +++ Q + + AQG + A EKA
Sbjct: 64 KGELTRSLALMQQTEQMARQHD-----VWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 118
Query: 692 SLDPNFLDAY 701
L
Sbjct: 119 QLINEQHLEQ 128
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 37/321 (11%), Positives = 80/321 (24%), Gaps = 31/321 (9%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAE---RHCMQLWRQETNNTGVLL---LLSSIHFQC 55
+ L + G+ + + Q+ RQ L S I F
Sbjct: 45 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 104
Query: 56 RKLDKSAHFSTLAIKQNP--------LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP 107
L + A + + + +L EA + R + +
Sbjct: 105 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 164
Query: 108 DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ L A A L + + + ++ + +Y
Sbjct: 165 SY--QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222
Query: 168 CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN----AIVCNYGGRKPTTLESAHFS 223
G+ A L N + + +N I+ LE + +
Sbjct: 223 W--QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 280
Query: 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP---------DFIDGYINL 274
+++ L L +Y + G+ +A A++L +
Sbjct: 281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 340
Query: 275 AAALVAAGDMEQAVQAYVTAL 295
L+ + + Q +
Sbjct: 341 LRQLIQLNTLPELEQHRAQRI 361
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 50.3 bits (118), Expect = 6e-07
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 15/144 (10%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDG----YINLAAALVAA 632
+ ++ A ++ G A RH + + + N+A A +
Sbjct: 205 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 264
Query: 633 GDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVS 692
G+ E A +++ D L ++ G A A+
Sbjct: 265 GEFEPAEIVLEELN-----ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319
Query: 693 LDP------NFLDAYINLGNVLKE 710
L +F+ + L++
Sbjct: 320 LANRTGFISHFVIEGEAMAQQLRQ 343
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (105), Expect = 3e-05
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 14/143 (9%)
Query: 566 KLDKSAHFSTLAIKQNP-----LLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFID 620
D++ + LA+++ P A S LG V +G+L +L + ++
Sbjct: 27 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 86
Query: 621 ------GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVF 674
I + L A G ++ A + A Q +L E P +
Sbjct: 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL---EQLPMHEFLVRIRAQLL 143
Query: 675 NAQGEIWLAIHHFEKAVSLDPNF 697
A + A + + ++
Sbjct: 144 WAWARLDEAEASARSGIEVLSSY 166
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 17/117 (14%), Positives = 27/117 (23%), Gaps = 8/117 (6%)
Query: 576 LAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAV------RLKPDFIDGYINLAAAL 629
N L + N+ G+ + A RL D + L
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301
Query: 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHH 686
AG A + + AL+ I A + + H
Sbjct: 302 WQAGRKSDAQRVLLDALKLANR--TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 611 AVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670
+R + A + G+ ++A + AL+ P VA S L
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP------GWFYSRIVATSVL 57
Query: 671 GCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
G V + +GE+ ++ ++ + + L
Sbjct: 58 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (91), Expect = 0.001
Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 563 ECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKP------ 616
+ + + + +++ L L +Y + G+ +A A++L
Sbjct: 269 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
Query: 617 ---DFIDGYINLAAALVAAGDMEQAVQAYVTAL 646
+ L+ + + Q +
Sbjct: 329 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 361
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (126), Expect = 4e-09
Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 13/128 (10%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
GN G + +AL+ Y A++L P Y A A
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYS-----------NRSAAYAKKG 51
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Q K ++ +PD+ +S A +E+ + + N L
Sbjct: 52 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111
Query: 705 GNVLKEAR 712
N+ EAR
Sbjct: 112 QNM--EAR 117
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 9e-05
Identities = 14/109 (12%), Positives = 37/109 (33%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L E ++ G+ + A + + + + +N + S+ + + K+ +
Sbjct: 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 65
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 119
P + YS + + +EA Y ++ + + L
Sbjct: 66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 9e-05
Identities = 26/92 (28%), Positives = 38/92 (41%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
GN G + +AL+ Y A++L P Y N +AA GD ++A +
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY 167
+ PD S L+ L R +EAK Y
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTY 94
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKP-VTMKVQNAIVCNYGGRKPTTLES 219
++ +L + GN ++G +D+A ++E IK V + +K ++
Sbjct: 1 EQVNELK----EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 56
Query: 220 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA 277
+ P + YS + + +EA Y ++ + + L
Sbjct: 57 YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 4e-09
Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 4/142 (2%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL----VAAGDMEQAVQ 640
+ G VY + G+ ++AL Y+ V A +A+
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 641 AYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDA 700
+ A KA+E + S G A + LA F+K + L PN A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 701 YINLGNVLKEARIFDRANTLFY 722
L + R Y
Sbjct: 133 KTQLAVCQQRIRRQLAREKKLY 154
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 20/158 (12%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ E ++ G Y+ A ++ S+ + A K
Sbjct: 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYE-------------------SSFSNEEAQK 56
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
L ++ NL + + A+E+ A+ L + G A +A D E A
Sbjct: 57 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 116
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA-KDLY 167
+ LQ P+ ++ L + + R K LY
Sbjct: 117 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 154
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 644
AE N Y + + A++ Y A+ L P Y N + A +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY--------- 60
Query: 645 ALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINL 704
Y +AIE + + A G+ A+ +E V + P+ DA +
Sbjct: 61 --GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 118
Query: 705 GNVLKEAR 712
K +
Sbjct: 119 QECNKIVK 126
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 8e-08
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
L A+ ++A DYE+A + Q +N S + + + +T AI+
Sbjct: 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA--LVAAGDMEQ 128
+ + Y G+ + AL +Y V++KP D + +V E+
Sbjct: 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
Query: 129 AVQAYVTALQYNPDL 143
A+ L
Sbjct: 133 AIAGDEHKRSVVDSL 147
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 3e-06
Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 7/151 (4%)
Query: 158 GRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTL 217
G L A++L N + A +++ I+ + +
Sbjct: 5 GALKRAEELK----TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY 60
Query: 218 ESAHFSTL-AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAA 276
A AI+ + + Y G+ + AL +Y V++KP D +
Sbjct: 61 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120
Query: 277 A--LVAAGDMEQAVQAYVTALQYNPLLKKED 305
+V E+A+ L E
Sbjct: 121 CNKIVKQKAFERAIAGDEHKRSVVDSLDIES 151
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 577 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA--LVAAGD 634
AI+ + + Y G+ + AL +Y V++KP D + +V
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129
Query: 635 MEQAVQAYVTALQYNPSCYLKAIETRPDFA 664
E+A+ S ++++ +++
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEYS 159
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 19/93 (20%), Positives = 31/93 (33%)
Query: 76 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVT 135
AE N Y + + A++ Y A+ L P Y N + A + A+
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 136 ALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYC 168
A++ + ALG+ A Y
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRDYE 102
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 51.2 bits (121), Expect = 5e-08
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAA-----LVAAGDMEQAV 639
A GN + ++ ++ EA+ Y+ A+ + + ++
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
K ++ + A LG G + A + KA SL+PN LD
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 700 AYINLGNV---LKEAR 712
+ LKEAR
Sbjct: 137 IRNSYELCVNKLKEAR 152
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 18/152 (11%), Positives = 46/152 (30%), Gaps = 18/152 (11%)
Query: 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIK 70
+ E + ++ + A + + L K
Sbjct: 20 IKEEGNEFFKKNEINEAIVKYKE------------------ALDFFIHTEEWDDQILLDK 61
Query: 71 QNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAV 130
+ + NL Y + +A+++ +++ + + L A + G +E+A
Sbjct: 62 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121
Query: 131 QAYVTALQYNPDLYCVRSDLGNLLKALGRLDE 162
+ A NP+ +R+ + L +
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 4/91 (4%)
Query: 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGE 679
+ L D + + + D L QG+
Sbjct: 6 EDSFELGKVAYTEADYYHTELWM----EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD 61
Query: 680 IWLAIHHFEKAVSLDPNFLDAYINLGNVLKE 710
+ A+ +K + LDP A NL
Sbjct: 62 LDKALLLTKKLLELDPEHQRANGNLKYFEYI 92
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 7e-07
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 74 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGDM 126
L AE LG V A+R D + L+ A+ GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 127 EQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR 159
++A+ L+ +P+ +L + +
Sbjct: 63 DKALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 583 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGDM 635
L AE LG V A+R D + L+ A+ GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 636 EQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLG 671
++A+ L+ + P+ A NL
Sbjct: 63 DKALLLTKKLLELD-----------PEHQRANGNLK 87
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (91), Expect = 1e-04
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 232 LLAEAYSNLGNVYKERGQLQEALENYRHAVRL-------KPDFIDGYINLAAALVAAGDM 284
L AE LG V A+R D + L+ A+ GD+
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 285 EQAVQAYVTALQYNP 299
++A+ L+ +P
Sbjct: 63 DKALLLTKKLLELDP 77
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 19/90 (21%), Positives = 30/90 (33%)
Query: 2 NDIAQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKS 61
D +LG A + E A R + + VL LS +Q LDK+
Sbjct: 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKA 65
Query: 62 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 91
+ ++ +P A NL +
Sbjct: 66 LLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 19/106 (17%), Positives = 25/106 (23%), Gaps = 11/106 (10%)
Query: 623 INLAAALVAAGDMEQAVQAYVTALQYNPSCYLK-----------AIETRPDFAVAWSNLG 671
AAG EQA + AL+ L A D +A +
Sbjct: 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKA 74
Query: 672 CVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717
A G I E P + L + A
Sbjct: 75 EAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 120
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.1 bits (90), Expect = 9e-04
Identities = 23/154 (14%), Positives = 34/154 (22%), Gaps = 36/154 (23%)
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNP-DLYCVRSDLGNLLKALGRLDEAKDLYCVRSD 172
AAG EQA + AL+ + D + L E D +
Sbjct: 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVE--DKVLAHTA 72
Query: 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPL 232
A GR ++P
Sbjct: 73 KAEAEIACGRASAVIAELEAL---------------------------------TFEHPY 99
Query: 233 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPD 266
++ L Y + +AL YR D
Sbjct: 100 REPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 133
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDM----------EQAV 639
+ + ++ ++ + + P D L+ ++A+
Sbjct: 2 DTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI 61
Query: 640 QAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699
+ AL +P + A+ LA F++AV P+
Sbjct: 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121
Query: 700 AYINLGNVLKEARIFDRA 717
+L K ++ A
Sbjct: 122 YLKSLEMTAKAPQLHAEA 139
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.8 bits (83), Expect = 0.004
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 4/147 (2%)
Query: 114 INLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDL 173
++ EQ Q + NP + G +L L + D + +
Sbjct: 1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEA 60
Query: 174 GNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233
+ +D K+ I + + K + F A+ + P
Sbjct: 61 ITKFEEALLIDPKKDEAVWCIG-NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 119
Query: 234 AEAYSNLGNVYKERGQLQEALENYRHA 260
+L K EA Y+
Sbjct: 120 THYLKSLEMTAKAPQLHAEA---YKQG 143
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 904 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1ofcx3 | 102 | HAND domain of the nucleosome remodeling ATPase IS | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.6 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.53 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.44 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.26 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.0 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.26 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.9 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.53 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 92.73 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 85.55 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-38 Score=344.27 Aligned_cols=387 Identities=60% Similarity=0.908 Sum_probs=359.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
++.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|
T Consensus 2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVR 170 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (904)
++++|+..+.+++..+|.........+......+....+...........+.........+......+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY--- 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH---
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH---
Confidence 99999999999999999999999999999999999999999998888888888888888888888777777776666
Q ss_pred HhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCH
Q psy17306 171 SDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 250 (904)
Q Consensus 171 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 250 (904)
.+.+...|+.+.++..+|.++...|++
T Consensus 159 -----------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (388)
T d1w3ba_ 159 -----------------------------------------------------LKAIETQPNFAVAWSNLGCVFNAQGEI 185 (388)
T ss_dssp -----------------------------------------------------HHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred -----------------------------------------------------HHhhccCcchhHHHHhhcccccccCcH
Confidence 577788999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhc
Q psy17306 251 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVM 330 (904)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 330 (904)
++|...+++++..+|+++.++..+|.++...|++++|+..++++....|...
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------------- 237 (388)
T d1w3ba_ 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---------------------------- 237 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----------------------------
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHH----------------------------
Confidence 9999999999999999999999999999999999999999999998877661
Q ss_pred ccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCccccc
Q psy17306 331 MKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDT 410 (904)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 410 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T d1w3ba_ 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCCCCcccccCcccccchhcccCCCcchh
Q psy17306 411 EEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQC 490 (904)
Q Consensus 411 ~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (904)
T Consensus 238 -------------------------------------------------------------------------------- 237 (388)
T d1w3ba_ 238 -------------------------------------------------------------------------------- 237 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhh
Q psy17306 491 VEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKS 570 (904)
Q Consensus 491 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a 570 (904)
..+..+|.++...|++++|+..|++
T Consensus 238 --------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~----- 262 (388)
T d1w3ba_ 238 --------------------------------------------------VVHGNLACVYYEQGLIDLAIDTYRR----- 262 (388)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHH-----
T ss_pred --------------------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHH-----
Confidence 1225667788889999999999999
Q ss_pred hhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 571 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 571 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+++.+|+++.++..+|.++...|++++|+..|++++...|.+...+..+|.++...|++++|+.
T Consensus 263 ------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~---------- 326 (388)
T d1w3ba_ 263 ------AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR---------- 326 (388)
T ss_dssp ------HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH----------
T ss_pred ------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcc
Q psy17306 651 SCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARI 713 (904)
Q Consensus 651 ~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 713 (904)
.+.++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.+|.++||
T Consensus 327 -~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 327 -LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 77777788899999999999999999999999999999999999999999999999999886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-36 Score=327.52 Aligned_cols=384 Identities=26% Similarity=0.357 Sum_probs=355.3
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy17306 46 LLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD 125 (904)
Q Consensus 46 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 125 (904)
+.+|..+++.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHH
Q psy17306 126 MEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAI 205 (904)
Q Consensus 126 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 205 (904)
+++|+..+..+...+|.........+......+....+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 124 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY-------------------------------------- 124 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH--------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc--------------------------------------
Confidence 999999999999999999988888888888887777666555
Q ss_pred HHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy17306 206 VCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME 285 (904)
Q Consensus 206 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (904)
.......+.........+......+....+...+.+.+...|+++.++..+|.++...|+++
T Consensus 125 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 125 ------------------VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp ------------------HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ------------------ccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHH
Confidence 34445556667777888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcccccCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccc
Q psy17306 286 QAVQAYVTALQYNPLLKKEDGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDL 365 (904)
Q Consensus 286 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (904)
+|...++++++.+|++.
T Consensus 187 ~A~~~~~~al~~~p~~~--------------------------------------------------------------- 203 (388)
T d1w3ba_ 187 LAIHHFEKAVTLDPNFL--------------------------------------------------------------- 203 (388)
T ss_dssp HHHHHHHHHHHHCTTCH---------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCcccH---------------------------------------------------------------
Confidence 99999999999998771
Q ss_pred cccCCCcchhhHHHHHHHHhhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhh
Q psy17306 366 HSGLFGGSVHEAMTDLIYIMGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMS 445 (904)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~ 445 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T d1w3ba_ 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCccccccccccccCCCCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhccccccc
Q psy17306 446 RWRYPSLSLHGIEGAFSGPGGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRT 525 (904)
Q Consensus 446 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 525 (904)
T Consensus 204 -------------------------------------------------------------------------------- 203 (388)
T d1w3ba_ 204 -------------------------------------------------------------------------------- 203 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchHHHHHHHHHHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Q psy17306 526 NPEHPNYVAAARATKYVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 605 (904)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 605 (904)
.++..+|.++...|++++|+..+++ +...+|..+..+..+|.++...|++++|+
T Consensus 204 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 257 (388)
T d1w3ba_ 204 ---------------DAYINLGNVLKEARIFDRAVAAYLR-----------ALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp ---------------HHHHHHHHHHHTTTCTTHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HHHHHHhhhhhccccHHHHHHHHHH-----------hHHHhhhHHHHHHHHHHHHHHCCCHHHHH
Confidence 1236667788889999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHH
Q psy17306 606 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIH 685 (904)
Q Consensus 606 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 685 (904)
..|+++++++|+++.++.++|.++...|++++|+. .+.+++...|..+.++..+|.++...|++++|+.
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED-----------CYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------HHHhhhccCCccchhhhHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999 6667777889999999999999999999999999
Q ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHH
Q psy17306 686 HFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKT 745 (904)
Q Consensus 686 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 745 (904)
.|+++++++|+++.+++++|.+|..+|++++|+.+|+++++..|++.+....++.++.++
T Consensus 327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999888887654
|
| >d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HAND domain of the nucleosome remodeling ATPase ISWI superfamily: HAND domain of the nucleosome remodeling ATPase ISWI family: HAND domain of the nucleosome remodeling ATPase ISWI domain: HAND domain of the nucleosome remodeling ATPase ISWI species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2.3e-39 Score=249.73 Aligned_cols=99 Identities=88% Similarity=1.357 Sum_probs=81.5
Q ss_pred chhHHHHHHHhcCCCCCCCCCCCCCCCCccccccCCchhHhHHHHHHHHHHhhcCccCCCCCCCCcchHHHHHHHHhhhh
Q psy17306 805 AVDAYFKEALRTSEPKAPKAPRPPKQPIVQDFQFFPPRLFEILDQEIYYFRKTVGYKVPKNPELGSDATKAQKEEQKKID 884 (904)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (904)
|||.||++||++++++.|++||+||++||+|||||||||.||||+|++||+|+||||||..++.+++....+.+||++||
T Consensus 1 svD~Yykd~l~~~~~k~pk~PR~PK~~~~~DfQFfp~rL~eL~ekE~~~~rK~i~ykvp~~~~~~~~~~~~~~eEq~~Id 80 (102)
T d1ofcx3 1 AVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKID 80 (102)
T ss_dssp CHHHHHHHHC--------CCCCCTTCCCCCGGGCCCHHHHHHHHHHHHHHHHHTTCCCCCCC-------HHHHHHHHHHH
T ss_pred ChHHHHHHHHHccCCCCCCCCCCCCCcCccccccCCHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhHHHHHhccc
Confidence 69999999999988899999999999999999999999999999999999999999999998777777777779999999
Q ss_pred ccCCCCHHHHHHHHHHhhc
Q psy17306 885 ESEPLTEEELAEKEELLTQ 903 (904)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~ 903 (904)
||+||||||+++|++|++|
T Consensus 81 na~pLTeEE~~eKe~Ll~e 99 (102)
T d1ofcx3 81 EAEPLTEEEIQEKENLLSQ 99 (102)
T ss_dssp TCCCCCHHHHHHHHHHTTS
T ss_pred cCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-25 Score=233.28 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=124.6
Q ss_pred hcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy17306 552 EGGSIPITLTFECRKLDKSAHFSTLAIKQNPL--LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAAL 629 (904)
Q Consensus 552 ~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 629 (904)
..+.+.+|+..|.+ ++..+|+ ++.++..+|.++...|++++|+..|++++..+|+++.++.++|.++
T Consensus 148 ~~~~~~~a~~~~~~-----------al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 216 (323)
T d1fcha_ 148 SDSLFLEVKELFLA-----------AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 216 (323)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH-----------HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcc
Confidence 34556778888888 8888876 4678999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHH--------
Q psy17306 630 VAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAY-------- 701 (904)
Q Consensus 630 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~-------- 701 (904)
..+|++++|++ .+.++++.+|+++.+|+++|.+|..+|++++|+..|++|++++|++..++
T Consensus 217 ~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 285 (323)
T d1fcha_ 217 ANGNQSEEAVA-----------AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285 (323)
T ss_dssp HHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred cccccchhHHH-----------HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHH
Confidence 99999999999 66677778899999999999999999999999999999999999877654
Q ss_pred ---HHHHHHHHHhcchhHHHHHH
Q psy17306 702 ---INLGNVLKEARIFDRANTLF 721 (904)
Q Consensus 702 ---~~la~~~~~~g~~~~A~~~~ 721 (904)
.+++.++..+|+.+.+....
T Consensus 286 ~~~~~l~~al~~~~~~d~~~~~~ 308 (323)
T d1fcha_ 286 NIWSTLRLALSMLGQSDAYGAAD 308 (323)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 44566666666665554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-24 Score=227.06 Aligned_cols=236 Identities=20% Similarity=0.267 Sum_probs=215.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q psy17306 11 LLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 90 (904)
Q Consensus 11 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 90 (904)
.+.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|.++++++|++...+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCh--hhHHHHHHHH
Q psy17306 91 QLQEALENYRHAVRLKPDFIDGY---------------INLAAALVAAGDMEQAVQAYVTALQYNPDL--YCVRSDLGNL 153 (904)
Q Consensus 91 ~~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 153 (904)
++++|+..+++++..+|...... ......+...+.+.+|+..+.++++.+|+. +.++..+|.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999999999988754321 112223445677899999999999999875 5677888999
Q ss_pred HHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 154 LKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
+...|++++|+..+ ++++..+|++
T Consensus 182 ~~~~~~~~~A~~~~--------------------------------------------------------~~al~~~p~~ 205 (323)
T d1fcha_ 182 FNLSGEYDKAVDCF--------------------------------------------------------TAALSVRPND 205 (323)
T ss_dssp HHHTTCHHHHHHHH--------------------------------------------------------HHHHHHCTTC
T ss_pred HHHHHHHhhhhccc--------------------------------------------------------cccccccccc
Confidence 99999998888888 6888999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcc
Q psy17306 234 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLLK 302 (904)
Q Consensus 234 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 302 (904)
+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|++.
T Consensus 206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 274 (323)
T d1fcha_ 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 274 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999883
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4e-21 Score=197.52 Aligned_cols=240 Identities=14% Similarity=0.127 Sum_probs=210.5
Q ss_pred HhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcccc
Q psy17306 226 AIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG-DMEQAVQAYVTALQYNPLLKKE 304 (904)
Q Consensus 226 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 304 (904)
.+..+|+..+++..+|.++.+.+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++.
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~-- 112 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-- 112 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH--
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh--
Confidence 346688999999999999999999999999999999999999999999999999987 59999999999999999881
Q ss_pred cCCCCCcccccHHHHHHHHHhhhhhcccccccchhhhhhhhhhhhhhhhHHHHhhhccccccccCCCcchhhHHHHHHHH
Q psy17306 305 DGWNTEPFVLDFERRKALWRRGALVMMKRPVLGLASAIESISANQEKCAVNIKIECASKDLHSGLFGGSVHEAMTDLIYI 384 (904)
Q Consensus 305 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (904)
T Consensus 113 -------------------------------------------------------------------------------- 112 (315)
T d2h6fa1 113 -------------------------------------------------------------------------------- 112 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccccCCcccccccccccCcccccHHHHHHHHhhhHHHHHHhhcCCCcchhhhHHHHhhhcccCccccccccccccCC
Q psy17306 385 MGQLVEPNGKILIPHIYKDVEPLGDTEEQFYEKIDFDTEDFRTAIDHPKLTKADKTQVLMSRWRYPSLSLHGIEGAFSGP 464 (904)
Q Consensus 385 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 464 (904)
T Consensus 113 -------------------------------------------------------------------------------- 112 (315)
T d2h6fa1 113 -------------------------------------------------------------------------------- 112 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCcccccchhcccCCCcchhhHhhhHHHHHHHHHHhcChhHHHHHHHhcccccccCCCCcchHHHHHHHHHHHh
Q psy17306 465 GGKTVIPGKVVGKFSIRIVPNQTPQCVEKYVLDYLNELWKARNSPNKFKAYLLDSGKSWRTNPEHPNYVAAARATKYVYN 544 (904)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (904)
.+|.
T Consensus 113 ----------------------------------------------------------------------------~a~~ 116 (315)
T d2h6fa1 113 ----------------------------------------------------------------------------QVWH 116 (315)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 2347
Q ss_pred hCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy17306 545 VEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYIN 624 (904)
Q Consensus 545 ~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 624 (904)
.+|.++...|++++|+..+.+ +++.+|.+..+|+++|.++...|++++|+..|+++++++|.+..+|++
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~k-----------al~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~ 185 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIAD-----------ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 185 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhHHHHhhccHHHHHHHHhh-----------hhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHH
Confidence 778888899999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC------HHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcC--
Q psy17306 625 LAAALVAAGD------MEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPN-- 696 (904)
Q Consensus 625 lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 696 (904)
+|.++...+. +++|+. .+.++++.+|++..+|+.+|.++...| ..++...+++++++.|+
T Consensus 186 r~~~l~~~~~~~~~~~~~~ai~-----------~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 186 RYFVISNTTGYNDRAVLEREVQ-----------YTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHccccchhhhhHHhHH-----------HHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence 9999998887 456666 788888999999999999999876554 58899999999998776
Q ss_pred cHHHHHHHHHHHHHh--cchhHHHHHHHHhhc
Q psy17306 697 FLDAYINLGNVLKEA--RIFDRANTLFYVSSY 726 (904)
Q Consensus 697 ~~~a~~~la~~~~~~--g~~~~A~~~~~~a~~ 726 (904)
++.++..++.+|... +..+.+...+.++.+
T Consensus 254 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 254 SPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 467777888887554 455566666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.6e-21 Score=197.07 Aligned_cols=242 Identities=11% Similarity=0.022 Sum_probs=208.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCR-KLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
|....++..+|.++...+.+++|+..++++++.+|.+..+|..+|.++...| ++++|+..++++++.+|++..+|..+|
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~ 119 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence 6778889999999999999999999999999999999999999999999987 599999999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHH
Q psy17306 84 NVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEA 163 (904)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 163 (904)
.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.+..+
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888775332
Q ss_pred HHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHH
Q psy17306 164 KDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNV 243 (904)
Q Consensus 164 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~ 243 (904)
.. +++|+..+ .+++..+|.+..+|..+|.+
T Consensus 200 ~~-----------------~~~ai~~~---------------------------------~~al~~~P~~~~~~~~l~~l 229 (315)
T d2h6fa1 200 AV-----------------LEREVQYT---------------------------------LEMIKLVPHNESAWNYLKGI 229 (315)
T ss_dssp HH-----------------HHHHHHHH---------------------------------HHHHHHSTTCHHHHHHHHHH
T ss_pred hh-----------------hHHhHHHH---------------------------------HHHHHhCCCchHHHHHHHHH
Confidence 21 12333333 58999999999999999998
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Q psy17306 244 YKERGQLQEALENYRHAVRLKPDF--IDGYINLAAALVAA--GDMEQAVQAYVTALQY 297 (904)
Q Consensus 244 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 297 (904)
+... ...++...+++++++.|+. +.++..++.++... +..+.+...+.+++++
T Consensus 230 l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 230 LQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 286 (315)
T ss_dssp HTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6554 4688999999998887754 55666777776543 4545556666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=2.3e-21 Score=202.89 Aligned_cols=143 Identities=6% Similarity=-0.188 Sum_probs=116.9
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
+.+|.++...|++++|+..+++ ++...|.....+. .+...+..++|...|.+++..+|.+..++.
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~-----------~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~ 246 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRL-----------PENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCE 246 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSS-----------CHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------hHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHH
Confidence 5566666677777777666666 5555555544433 344567778899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYIN 703 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 703 (904)
.+|.++...|++.+|+. .+.+++..+|+++.++..+|.++..+|++++|+.+|+++++++|.+...|.+
T Consensus 247 ~l~~~~~~~~~~~~a~~-----------~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 247 LSVEKSTVLQSELESCK-----------ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp CCHHHHHHHHHHHHHHH-----------HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH-----------HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 99999999999999999 7777788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy17306 704 LGNVLKEAR 712 (904)
Q Consensus 704 la~~~~~~g 712 (904)
|+..+....
T Consensus 316 L~~~~~~e~ 324 (334)
T d1dcea1 316 LRSKFLLEN 324 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHhh
Confidence 988887443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1.4e-21 Score=204.59 Aligned_cols=151 Identities=12% Similarity=-0.001 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCC--h
Q psy17306 93 QEALENYRHAVRLKPDFIDGYINLAAALVA----------AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGR--L 160 (904)
Q Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~ 160 (904)
++|+.++++++..+|++..+|..++.++.. .|++++|+.+++++++.+|++..++..+|.++...++ +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 455555555555555555555444444332 2335666666666666666666666666666655543 4
Q ss_pred HHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHH-HH
Q psy17306 161 DEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAY-SN 239 (904)
Q Consensus 161 ~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 239 (904)
++|+..+ .+++..+|.+..++ ..
T Consensus 126 ~~a~~~~--------------------------------------------------------~~al~~~~~~~~~~~~~ 149 (334)
T d1dcea1 126 ARELELC--------------------------------------------------------ARFLEADERNFHCWDYR 149 (334)
T ss_dssp HHHHHHH--------------------------------------------------------HHHHHHCTTCHHHHHHH
T ss_pred HHHHHHH--------------------------------------------------------HHHHhhCchhhhhhhhH
Confidence 4555444 45666666655554 45
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 240 LGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 240 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
.|.++...+.+++|+..+++++..+|.+..+|..+|.++..+|++++|+..+++++...|
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 209 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHH
Confidence 667777777888888888888888888888888888888888877766555544444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5e-19 Score=177.69 Aligned_cols=226 Identities=17% Similarity=0.074 Sum_probs=168.0
Q ss_pred cCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHH
Q psy17306 21 AGDYESAERHCMQLWRQET----NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAL 96 (904)
Q Consensus 21 ~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 96 (904)
.++.+.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 3456677778888876533 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHHHHHHhhHHH
Q psy17306 97 ENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLYCVRSDLGNL 176 (904)
Q Consensus 97 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~ 176 (904)
.+|+++++++|+++.++..+|.++..+|++++|+..|+++++.+|++......++..+...+....+........
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 166 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE----- 166 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999999999999988887777777777665544433331000
Q ss_pred HHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCC---cchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHH
Q psy17306 177 LKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRK---PTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 253 (904)
Q Consensus 177 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 253 (904)
........ ........... .....+...+.......|....+++.+|.++...|++++|
T Consensus 167 ----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 228 (259)
T d1xnfa_ 167 ----------------KSDKEQWG--WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 228 (259)
T ss_dssp ----------------HSCCCSTH--HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------ccchhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHH
Confidence 00000000 00011111110 1111222222344455677778889999999999999999
Q ss_pred HHHHHHHHhhCCCCHH
Q psy17306 254 LENYRHAVRLKPDFID 269 (904)
Q Consensus 254 ~~~~~~al~~~p~~~~ 269 (904)
+.+|++++..+|++..
T Consensus 229 ~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 229 TALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHHcCCCCHH
Confidence 9999999999988653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4.5e-17 Score=172.19 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcC
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF----IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETR 660 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 660 (904)
..++..+|.++...|++++|...+++++...|.+ ...+.++|.++...|++++|+..+++++. ..+.....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~ 287 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE-----NARSLRLM 287 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHhhcccC
Confidence 4566778888889999999999999998886653 45678899999999999999998888885 33345677
Q ss_pred cchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc---------HHHHHHHHHHHHHhcchhHHHH
Q psy17306 661 PDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF---------LDAYINLGNVLKEARIFDRANT 719 (904)
Q Consensus 661 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~ 719 (904)
|..+.++..+|.+|..+|++++|++.|++|+++.+.. ......+...+...++.+++..
T Consensus 288 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 288 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 8889999999999999999999999999999985431 2233334444444555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.6e-17 Score=166.55 Aligned_cols=76 Identities=12% Similarity=-0.061 Sum_probs=50.2
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 224 TLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 224 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
++++..+|+++.++..+|.++...|++++|+..|+++++.+|.+......++.++...+..+.+...........+
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 3444455555566666777777777777788888888888888777777777777777665555554444444333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.4e-16 Score=164.39 Aligned_cols=267 Identities=16% Similarity=0.039 Sum_probs=219.2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcc------
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNN-----TGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPL------ 74 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 74 (904)
..+.....+|.+++..|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++...+.
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 346677778999999999999999999999999986 357888999999999999999999999986443
Q ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCh---
Q psy17306 75 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKP--------DFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDL--- 143 (904)
Q Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 143 (904)
...++..++.++...|++..|...+.+++.+.+ .....+..+|.++...|+++.|...+.+++...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 356788999999999999999999999987532 123467789999999999999999999999876543
Q ss_pred --hhHHHHHHHHHHHcCChHHHHHHH------------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHH
Q psy17306 144 --YCVRSDLGNLLKALGRLDEAKDLY------------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQN 203 (904)
Q Consensus 144 --~~~~~~la~~~~~~~~~~~A~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 203 (904)
..++...+.++...+.+.++...+ .....++..+...|++++|...+.+.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----- 244 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF----- 244 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-----
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc-----
Confidence 356677888899999999888777 2344567777788888888888775443211
Q ss_pred HHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q psy17306 204 AIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRL------KPDFIDGYINLAAA 277 (904)
Q Consensus 204 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~ 277 (904)
...+.....+..+|.++...|++++|+..+++++.. .|....++..+|.+
T Consensus 245 ------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 300 (366)
T d1hz4a_ 245 ------------------------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300 (366)
T ss_dssp ------------------------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 123344667788999999999999999999999854 35556789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 278 LVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+..+|++++|+..+++++++.+..
T Consensus 301 ~~~~g~~~~A~~~l~~Al~l~~~~ 324 (366)
T d1hz4a_ 301 YWQAGRKSDAQRVLLDALKLANRT 324 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999876543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-15 Score=143.36 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=118.4
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
.+.|..+...|+|+.|+..|.+ ..|.++.+|+++|.+|..+|++++|+++|+++++++|+++.+|+
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~--------------i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~ 74 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSA--------------VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 74 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT--------------SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHh--------------cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHH
Confidence 3569999999999999999987 35567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhChh-----hHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 624 NLAAALVAAGDMEQAVQAYVTALQYNPS-----CYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
++|.++..+|++++|+..|++++...+. .....+........+++++|.++..+|++++|++.|++|+.+.|+.
T Consensus 75 ~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 75 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999998875432 1111122234456788899999999999999999999999888864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.1e-15 Score=130.02 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~ 665 (904)
.-+...|..+...|++++|+..|+++++.+|+++.+|.++|.++..+|++++|+. .+.++++.+|+++.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~ 72 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE-----------DGCKTVDLKPDWGK 72 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-----------HHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccch-----------hhhhHHHhccchhh
Confidence 3456789999999999999999999999999999999999999999999999999 77777788899999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK 709 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 709 (904)
+|+++|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988753
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.1e-15 Score=126.45 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Q psy17306 10 GLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER 89 (904)
Q Consensus 10 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 89 (904)
.+...|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+|+.+|.++..+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 35566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17306 90 GQLQEALENYRHAVRLKPDFIDGYINLAAA 119 (904)
Q Consensus 90 g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 119 (904)
|++++|+.+|+++++++|+++.++..++.+
T Consensus 85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666666666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6.1e-15 Score=133.96 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+..+...|..+...|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+. .|.++++.+|+++
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-----------~~~kal~~~p~~~ 78 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG-----------DATRAIELDKKYI 78 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHH-----------HHHHHHHHcccch
Confidence 45677899999999999999999999999999999999999999999999999999 7777788899999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH--HhcchhHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLK--EARIFDRANTL 720 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~g~~~~A~~~ 720 (904)
.+|..+|.++..+|++++|+..|++++.++|+++.++..++.+.. ..+.+++|+..
T Consensus 79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998887754 34445555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.1e-14 Score=133.15 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYK 87 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 87 (904)
+..++..|..+...|+|++|++.|.++ .|.++.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 345778999999999999999999864 56678999999999999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDF----------------IDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCV 146 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 146 (904)
.+|++++|+..|++++...|.+ ..+++.+|.++..+|++++|++.+.+++.+.|+....
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~ 156 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchH
Confidence 9999999999999999875432 3678899999999999999999999999999875433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.6e-14 Score=131.13 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q psy17306 6 QLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNV 85 (904)
Q Consensus 6 ~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 85 (904)
..+..+..+|..+++.|+|++|+..|+++++.+|+++.+|..+|.+++..|++++|+..|+++++++|++..++..+|.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 34677888888899999999999999999999999889999999999999999999999999998889888888999999
Q ss_pred HHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Q psy17306 86 YKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV--AAGDMEQAVQA 132 (904)
Q Consensus 86 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~g~~~~A~~~ 132 (904)
+..+|++++|+.+|++++.++|+++.++..++.+.. ..+.+++|+..
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999888888888877776643 33445555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=3.5e-13 Score=137.62 Aligned_cols=222 Identities=9% Similarity=-0.058 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh--------------cCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH
Q psy17306 24 YESAERHCMQLWRQETNNTGVLLLLSSIHFQC--------------RKLDKSAHFSTLAIKQ-NPLLAEAYSNLGNVYKE 88 (904)
Q Consensus 24 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 88 (904)
.+.+..+|++++...|.++.+|+..+...... +..++|..+|+++++. .|.+...|...+.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 56688899999999999999999887765433 3468899999999975 78888999999999999
Q ss_pred hCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH-cCChHHHHHH
Q psy17306 89 RGQLQEALENYRHAVRLKPDFI-DGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKA-LGRLDEAKDL 166 (904)
Q Consensus 89 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~ 166 (904)
+|+++.|...|++++...|.+. .+|..++......|+++.|+..|.++++..|.+...+...+..... .|+.+.|..+
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999999999775 4789999999999999999999999999999999988888876544 4677777776
Q ss_pred HHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHH
Q psy17306 167 YCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKE 246 (904)
Q Consensus 167 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~ 246 (904)
| ++++...|.++..+...+..+..
T Consensus 192 ~--------------------------------------------------------e~~l~~~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 192 F--------------------------------------------------------ELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp H--------------------------------------------------------HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H--------------------------------------------------------HHHHHhhhhhHHHHHHHHHHHHH
Confidence 6 57888889999999999999999
Q ss_pred hCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 247 RGQLQEALENYRHAVRLKPDFI----DGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 247 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+++.|..+|++++...|.++ ..|..........|+.+.+..+++++.+..|..
T Consensus 216 ~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 9999999999999999877543 478888888888999999999999999999977
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=7.1e-16 Score=168.77 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q psy17306 252 EALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 252 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 301 (904)
+|+++|++|+.+.|+.++++.++|.++...|++++| |++++..+|+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~ 50 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY 50 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh
Confidence 577777777777777777777777777777777765 67777777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=2.7e-14 Score=136.12 Aligned_cols=130 Identities=20% Similarity=0.042 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
++..+...|..+...|++++|+..|+++++++|.++.+|.++|.+|...|++++|+. .|.++++++|++
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~-----------~~~~al~l~p~~ 71 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA-----------DCRRALELDGQS 71 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHTTSCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhH-----------HHHHHHHhCCCc
Confidence 356678999999999999999999999999999999999999999999999999999 777888899999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHh
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVS 724 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 724 (904)
+.+|+++|.+|..+|++++|+..|+++++++|++...+...+..+...+....+.....+.
T Consensus 72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (201)
T d2c2la1 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999877666666666666666655555444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=1.2e-13 Score=139.77 Aligned_cols=164 Identities=11% Similarity=-0.036 Sum_probs=130.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCccc--
Q psy17306 4 IAQLGIGLLELAHREYQAGDYESAERHCMQLWRQET------NNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLL-- 75 (904)
Q Consensus 4 ~~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 75 (904)
++..+..+...|..|...|+|++|+..|.+++...+ ..+.++..+|.+|...|++++|+.++++++.+.+..
T Consensus 33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~ 112 (290)
T d1qqea_ 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence 456677889999999999999999999999987632 235678899999999999999999999999875543
Q ss_pred ----HHHHHHHHHHHHH-hCcHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChh
Q psy17306 76 ----AEAYSNLGNVYKE-RGQLQEALENYRHAVRLKPD------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLY 144 (904)
Q Consensus 76 ----~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 144 (904)
..++..+|.++.. .|++++|+..|++++.+.+. ...++..+|.++..+|++++|+..|++++...|.+.
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~ 192 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence 5678889988865 59999999999999887422 245688899999999999999999999999887764
Q ss_pred h-------HHHHHHHHHHHcCChHHHHHHH
Q psy17306 145 C-------VRSDLGNLLKALGRLDEAKDLY 167 (904)
Q Consensus 145 ~-------~~~~la~~~~~~~~~~~A~~~~ 167 (904)
. .+...+.++...|++..|...+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~ 222 (290)
T d1qqea_ 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (290)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 2344555555556655555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.5e-13 Score=125.61 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF---------------IDGYINLAAALVAAGDMEQAVQAYVTALQYN 649 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 649 (904)
+..+...|..++..|++++|+..|++++...|.. ..++.++|.+|..+|++++|+.
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~--------- 83 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE--------- 83 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccc---------
Confidence 5677889999999999999999999999987653 2467788999999999999998
Q ss_pred hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHH
Q psy17306 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 650 ~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 718 (904)
.+.+++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+...++.+....+...+..
T Consensus 84 --~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 84 --SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp --HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777788888899999999999999999999999999999999998888888887777666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=8.1e-13 Score=133.48 Aligned_cols=181 Identities=11% Similarity=0.024 Sum_probs=144.9
Q ss_pred HHHhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q psy17306 541 YVYNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDF-- 618 (904)
Q Consensus 541 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 618 (904)
..|...|.+|...++|++|+..|.++++... .....+..+.++.++|.+|...|++++|++.|++++++.+..
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~-----~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~ 112 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQK-----KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence 5678889999999999999999999333211 111124456799999999999999999999999999985443
Q ss_pred ----HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q psy17306 619 ----IDGYINLAAALVA-AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSL 693 (904)
Q Consensus 619 ----~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 693 (904)
..++.++|.++.. .|++++|++.|++++++.+. ....+....++.++|.++..+|++++|+..|++++..
T Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~-----~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~ 187 (290)
T d1qqea_ 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ-----DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh-----cCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence 5688899998865 69999999999988864321 2223445678999999999999999999999999999
Q ss_pred CcCcH-------HHHHHHHHHHHHhcchhHHHHHHHHhhcccCCh
Q psy17306 694 DPNFL-------DAYINLGNVLKEARIFDRANTLFYVSSYFMITD 731 (904)
Q Consensus 694 ~p~~~-------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 731 (904)
.|..+ ..+.+.|.++...|+++.|...|.++....|..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~ 232 (290)
T d1qqea_ 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (290)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77653 567889999999999999999999999987653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=6.2e-14 Score=133.57 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=91.5
Q ss_pred HhhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy17306 543 YNVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGY 622 (904)
Q Consensus 543 ~~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 622 (904)
+...|..++..|+|++|+..|++ ++..+|.++.+|.++|.+|...|++++|+..|+++++++|+++.+|
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~k-----------al~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~ 75 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGR-----------AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-----------HHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHH
Confidence 46789999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 623 INLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 623 ~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+++|.+|..+|++++|+..|++++++.|
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999997777666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.48 E-value=3.2e-13 Score=123.75 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+..+...|..+...|++.+|+..|+++++..+.. .+.. ........+|..+
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~-----------~~~~~~~~~~~~~ 77 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAA-----------EDADGAKLQPVAL 77 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHS-----------CHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhh-----------hhHHHHHhChhhH
Confidence 4456677888888888888888888877542111 1111 2334446678889
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
.++.++|.++.++|++++|+..|++|++++|+++.+++++|.+|..+|++++|+..|++++++.|++..+...+..+..+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q psy17306 745 TEELNKK 751 (904)
Q Consensus 745 ~~~~~~~ 751 (904)
+.+..++
T Consensus 158 l~~~~~~ 164 (169)
T d1ihga1 158 IKAQKDK 164 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2e-13 Score=115.69 Aligned_cols=112 Identities=10% Similarity=-0.082 Sum_probs=96.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhChhhHHHhhhcCcch--H
Q psy17306 590 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGD---MEQAVQAYVTALQYNPSCYLKAIETRPDF--A 664 (904)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~l~~~p~~--~ 664 (904)
+++..+...+++++|++.|++++.++|+++.+++++|.++...++ +++|+. .+.+++..+|.. +
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~-----------~l~~~l~~~~~~~~~ 72 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIV-----------LLEELLPKGSKEEQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHH-----------HHHHHTTTSCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHH-----------HHHHHHhccCCchHH
Confidence 567778888999999999999999999999999999999987554 456888 556666665544 5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhc
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEAR 712 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 712 (904)
.+|+++|.+|..+|++++|+.+|+++++++|++..+...++.+..+.+
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999999988876654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.8e-14 Score=154.06 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q psy17306 25 ESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVR 104 (904)
Q Consensus 25 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 104 (904)
-+|+++|+++++..|+.++++..+|.++..+|++++| |++++..+|+.+..+...+.++ ...|..++..+++..+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3799999999999999999999999999999999886 8999999998777665444333 2346778888888886
Q ss_pred cC--CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH---------HHHHh
Q psy17306 105 LK--PDFID-GYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY---------CVRSD 172 (904)
Q Consensus 105 ~~--p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~---------~~~~~ 172 (904)
.. ++... ....++.+....+.|+.|+..+.+++.++|++...+..+|.++...|++++|...+ ..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 157 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH 157 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 54 22222 23334566677888999999999999999999999999999999999998887655 34445
Q ss_pred hHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHHHhCCHHH
Q psy17306 173 LGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 252 (904)
Q Consensus 173 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 252 (904)
+|.++...|++++|+..|. +++..+|+++..++.+|.++...|++.+
T Consensus 158 LG~l~~~~~~~~~A~~~y~---------------------------------~A~~l~P~~~~~~~~Lg~~~~~~~~~~~ 204 (497)
T d1ya0a1 158 LGDIARYRNQTSQAESYYR---------------------------------HAAQLVPSNGQPYNQLAILASSKGDHLT 204 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHH---------------------------------HHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHH---------------------------------HHHHHCCCchHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554 5555666666666666666666666666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy17306 253 ALENYRHAVRLKPDFIDGYINLAAALV 279 (904)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (904)
|+.+|.+++..+|..+.++.+|+.++.
T Consensus 205 A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 205 TIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666666666666666666666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.46 E-value=2.7e-13 Score=113.89 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 620 DGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 620 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..++.+|.++...|++++|+. .+++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~-----------~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 85 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAAL-----------AFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 85 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHH-----------HHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc
Confidence 346789999999999999999 777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHhh
Q psy17306 700 AYINLGNVLKEARIFDRANTLFYVSS 725 (904)
Q Consensus 700 a~~~la~~~~~~g~~~~A~~~~~~a~ 725 (904)
++.++|.+|..+|++++|+++|++.+
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999864
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.45 E-value=4.8e-13 Score=122.48 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHH
Q psy17306 608 YRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHF 687 (904)
Q Consensus 608 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 687 (904)
......++|....++.++|.++..+|++++|+. .+.++++++|+++.+|+++|.+|..+|++++|+..|
T Consensus 66 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~-----------~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~ 134 (169)
T d1ihga1 66 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVD-----------SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 134 (169)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHhChhhHHHHHHHHHHHHhhcccchhhh-----------hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHH
Confidence 344556678888999999999999999999999 777788889999999999999999999999999999
Q ss_pred HHHHhcCcCcHHHHHHHHHHHHHhcchhHHH
Q psy17306 688 EKAVSLDPNFLDAYINLGNVLKEARIFDRAN 718 (904)
Q Consensus 688 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 718 (904)
+++++++|++..+...++.+........++.
T Consensus 135 ~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 135 KKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.45 E-value=6.4e-13 Score=118.89 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+..+...|..++..|+|.+|+..|++++...|..... .+.... .. ..+...
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~-----------~~-----~~~~~~ 67 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILL-----------DK-----KKNIEI 67 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHH-----------HH-----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHH-----------Hh-----hhhHHH
Confidence 4567778899999999999999999999875542210 000000 00 001113
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAK 744 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 744 (904)
.++.++|.+|.++|++++|+.+++++++++|.++.+++++|.++..+|++++|+..|++++.+.|++.++...+..+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888777777777777777776
Q ss_pred HHHH
Q psy17306 745 TEEL 748 (904)
Q Consensus 745 ~~~~ 748 (904)
+++.
T Consensus 148 l~~~ 151 (153)
T d2fbna1 148 LKEA 151 (153)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.5e-13 Score=120.88 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhh----HHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSC----YLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
+..+...|..++..|+|++|+..|+++++..|.. ........+....++.++|.+|.++|++++|+.++++++.++
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~ 92 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 92 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence 4567789999999999999999999999876531 001111222345678899999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
|+++.+++++|.+|..+|++++|+..|++++...|++..+...++.+..+..+..+.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.44 E-value=1.6e-13 Score=121.19 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=96.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 594 VYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDME---QAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
.+.+++.+++|+..|+++++++|+++.+++++|.++...+++. ++...+++++. .|.++++++|+++.+|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~----~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT----KFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHhcchhhHHHhhH
Confidence 4567788999999999999999999999999999998776654 33444455555 7888888888889999999
Q ss_pred HHHHHhCCC-----------HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHH
Q psy17306 671 GCVFNAQGE-----------IWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRA 717 (904)
Q Consensus 671 g~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 717 (904)
|.+|..+|+ +++|+++|+++++++|++..++..|+.+....+.+.++
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998887653 68888888888888888888888888887666655554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.43 E-value=1e-11 Score=126.43 Aligned_cols=188 Identities=9% Similarity=-0.003 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy17306 58 LDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------------GQLQEALENYRHAVRL-KPDFIDGYINLAAALVA 122 (904)
Q Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~ 122 (904)
.+.+..+|++++...|.++..|+..+..+... +..++|...|++++.. .|.+...|..++.+...
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45677899999999999999999888765433 3468999999999975 78888999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHHcCChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhh
Q psy17306 123 AGDMEQAVQAYVTALQYNPDLY-CVRSDLGNLLKALGRLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKV 201 (904)
Q Consensus 123 ~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 201 (904)
.|+++.|...|++++...|.+. .+|..++.+....|+++.|..+|
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~---------------------------------- 157 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF---------------------------------- 157 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH----------------------------------
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH----------------------------------
Confidence 9999999999999999999775 47888899888888888888877
Q ss_pred HHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy17306 202 QNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEALENYRHAVRLKPDFIDGYINLAAALVA 280 (904)
Q Consensus 202 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (904)
.+++...|.....+...|.... ..|+.+.|..+|++++...|+++..|...+..+..
T Consensus 158 ----------------------~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 158 ----------------------KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp ----------------------HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 6888888988888888887754 46899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q psy17306 281 AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 281 ~g~~~~A~~~~~~al~~~p~~ 301 (904)
.|+++.|..+|+++++..|.+
T Consensus 216 ~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 216 LNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSC
T ss_pred cCChHHHHHHHHHHHHhCCCC
Confidence 999999999999999988766
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.43 E-value=2.2e-12 Score=117.66 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD---------------FIDGYINLAAALVAAGDMEQAVQAYVTALQYN 649 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 649 (904)
+..+...|..++..|++.+|+..|++++...|. ...++.++|.||..+|++++|+.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~--------- 85 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE--------- 85 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchh---------
Confidence 567888999999999999999999999976433 12456778888888888888888
Q ss_pred hhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhH
Q psy17306 650 PSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDR 716 (904)
Q Consensus 650 ~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 716 (904)
.+.+++.++|+++.+++++|.++..+|++++|+..|+++++++|+++.+...++.+....+.+.+
T Consensus 86 --~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 86 --CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp --HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence 66666677788888888888888888888888888888888888888888888888776665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.43 E-value=1e-12 Score=117.54 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
+..+...|..++..|+|.+|+..|+++++..+. . ...+. .... .....+ ..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~----~-~~~~~-~~~~------------------~~~~~~-----~~ 67 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH----T-EEWDD-QILL------------------DKKKNI-----EI 67 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----C-TTCCC-HHHH------------------HHHHHH-----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----h-hhhhh-HHHH------------------HhhhhH-----HH
Confidence 345677899999999999999988888864432 0 00111 1111 111111 23
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy17306 699 DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKKFEQLGES 758 (904)
Q Consensus 699 ~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 758 (904)
.++.|+|.+|.++|++++|++++++++...|++......++.+...++++.+++..+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999887554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.42 E-value=4.9e-13 Score=112.20 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHH
Q psy17306 586 EAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAV 665 (904)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~ 665 (904)
..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+. .+.++++++|+++.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~-----------~~~~al~~~p~~~~ 85 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII-----------ALNHARMLDPKDIA 85 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhc-----------cccccccccccccc
Confidence 3468899999999999999999999999999999999999999999999999999 77778888999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy17306 666 AWSNLGCVFNAQGEIWLAIHHFEKAV 691 (904)
Q Consensus 666 a~~~lg~~~~~~g~~~~A~~~~~~al 691 (904)
+|+.+|.+|..+|++++|++.+++.|
T Consensus 86 a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.39 E-value=3.1e-12 Score=116.59 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhH----HHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCY----LKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
+..+...|..++..|+|.+|+..|.+++...+... .......+....++.++|.||..+|++++|+.++++++.++
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 45678899999999999999999999987543211 11112333446678899999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCEAKTEELNKK 751 (904)
Q Consensus 695 p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (904)
|+++.+++++|.++..+|++++|+..|++++...|++..+...++.+...+.+.++.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999888877766544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=111.07 Aligned_cols=109 Identities=7% Similarity=-0.073 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhh---cCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHH
Q psy17306 13 ELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQC---RKLDKSAHFSTLAIKQNPLL--AEAYSNLGNVYK 87 (904)
Q Consensus 13 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 87 (904)
.++..+...+++++|.+.|++++..+|.++.+++.+|.++... +++++|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3455566666677777777777777777777777777666643 34445666676666665543 346666677777
Q ss_pred HhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17306 88 ERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 121 (904)
Q Consensus 88 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 121 (904)
.+|++++|+.+|+++++++|++..+...++.+..
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 7777777777777777767766666665555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7.8e-12 Score=107.76 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchH
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFA 664 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~ 664 (904)
+..+..+|..+...|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|+.. ...+..+
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~----~~~~~~a 79 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR----EDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST----TCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH----HHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999997777776555411 1122335
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHH
Q psy17306 665 VAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGN 706 (904)
Q Consensus 665 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 706 (904)
.++..+|.++..++++++|+.+|++++..+|+ +.....+..
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 120 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ 120 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 68888999999999999999999999998775 455444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2.6e-12 Score=110.76 Aligned_cols=112 Identities=21% Similarity=0.171 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
+..+-++|..++..|+|++|+. +|.++++++|+++.++.++|.+|..+|++++|+..|+++++++|.++
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~-----------~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~ 72 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALK-----------HYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-----------HHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence 3456789999999999999999 77777788999999999999999999999999999999999988774
Q ss_pred -------HHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHHHHH
Q psy17306 699 -------DAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILERCE 742 (904)
Q Consensus 699 -------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 742 (904)
.++..+|.++..++++++|+++|++++...+++ ++...+..+.
T Consensus 73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~-~~~~~l~~~~ 122 (128)
T d1elra_ 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQAE 122 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Confidence 467778888889999999999999999877654 3444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.32 E-value=2.4e-12 Score=113.45 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=102.5
Q ss_pred CchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhC
Q psy17306 546 EPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKER----------GQLQEALENYRHAVRLK 615 (904)
Q Consensus 546 l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~ 615 (904)
.+..+.+.+.|++|+..|++ +++.+|+++.+++++|.++... +.+++|+..|+++++++
T Consensus 3 ~~~~~~r~~~fe~A~~~~e~-----------al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~ 71 (145)
T d1zu2a1 3 TETEFDRILLFEQIRQDAEN-----------TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 71 (145)
T ss_dssp CCCSHHHHHHHHHHHHHHHH-----------HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHccHHHHHHHHHH-----------HHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 34556677889999999999 9999999999999999999754 45689999999999999
Q ss_pred CCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHH
Q psy17306 616 PDFIDGYINLAAALVAAG----DMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWL 682 (904)
Q Consensus 616 p~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~ 682 (904)
|+++.+++++|.+|..+| +...+...|.++++ .|.++++++|++..++..|+.+....+.+.+
T Consensus 72 P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~----~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 72 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ----FFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhh----hhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998875 45666777777777 8999999999999999999988644433333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.29 E-value=4.4e-10 Score=111.53 Aligned_cols=226 Identities=23% Similarity=0.282 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhcCcccHHHHHHHH
Q psy17306 8 GIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQ----CRKLDKSAHFSTLAIKQNPLLAEAYSNLG 83 (904)
Q Consensus 8 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la 83 (904)
+.+++.+|..++..|++.+|+++|+++.+. .++.+++.+|.+|.. ..++..|..+++.+.... ++.+...+|
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence 468999999999999999999999999754 678999999999987 678999999999887653 567778888
Q ss_pred HHHHH----hCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q psy17306 84 NVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLK 155 (904)
Q Consensus 84 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 155 (904)
.++.. .++.+.|...++++....+ ..+...+|..+.. ......|...+.+... +.+...+..+|.++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence 88765 4688999999999987654 5566677777765 4567778888877655 455677888888887
Q ss_pred HcC----ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCc
Q psy17306 156 ALG----RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNP 231 (904)
Q Consensus 156 ~~~----~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 231 (904)
... +...+...+ ..+. ++
T Consensus 154 ~~~~~~~~~~~~~~~~--------------------------------------------------------~~a~--~~ 175 (265)
T d1ouva_ 154 AGRGTPKDLKKALASY--------------------------------------------------------DKAC--DL 175 (265)
T ss_dssp HTSSSCCCHHHHHHHH--------------------------------------------------------HHHH--HT
T ss_pred cCCCcccccccchhhh--------------------------------------------------------hccc--cc
Confidence 632 222332222 2333 34
Q ss_pred hhHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCc
Q psy17306 232 LLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNPLL 301 (904)
Q Consensus 232 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 301 (904)
.++.+.+.+|.++.. ..++++|+.+|+++.+. .++.+++.||.+|.. ..++++|+.+|+++.......
T Consensus 176 g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 176 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 568899999999987 67999999999999887 478999999999986 448999999999999887655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.26 E-value=4.6e-10 Score=111.32 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=109.6
Q ss_pred cCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy17306 553 GGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALENYRHAVRLKPDFIDGYINLAAA 628 (904)
Q Consensus 553 ~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 628 (904)
..+.+.|...++. +....+ ..+...+|..+.. ......|...+.+... +.+..++.++|.+
T Consensus 87 ~~~~~~a~~~~~~-----------a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 87 SQNTNKALQYYSK-----------ACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp CCCHHHHHHHHHH-----------HHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred chhhHHHHHHHhh-----------hhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 3456677777777 666554 4556666666664 3456777777777655 4567888999999
Q ss_pred HHH----cCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCcCcHHH
Q psy17306 629 LVA----AGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA----QGEIWLAIHHFEKAVSLDPNFLDA 700 (904)
Q Consensus 629 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 700 (904)
+.. ..+...+... +..+. ++.++.+++++|.+|.. ..++++|+.+|+++.+. .++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~-----------~~~a~--~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a 216 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALAS-----------YDKAC--DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGG 216 (265)
T ss_dssp HHHTSSSCCCHHHHHHH-----------HHHHH--HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred hccCCCcccccccchhh-----------hhccc--cccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHH
Confidence 987 3456667763 33333 34567899999999987 67899999999999887 46889
Q ss_pred HHHHHHHHHH----hcchhHHHHHHHHhhcccC
Q psy17306 701 YINLGNVLKE----ARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 701 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 729 (904)
.++||.+|.. .+++++|.++|+++.....
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999999986 4489999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.24 E-value=2.5e-11 Score=108.95 Aligned_cols=109 Identities=22% Similarity=0.195 Sum_probs=89.8
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 585 AEAYSNL--GNVYKERGQLQEALENYRHAVRLKPDF------------IDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 585 ~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+.++..+ |..+...|+|++|+..|++++++.|+. ..++.++|.+|..+|++++|+..+++++.+.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3444444 888889999999999999999997764 35799999999999999999999999998443
Q ss_pred hhHHHhhhcCc----chHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCc
Q psy17306 651 SCYLKAIETRP----DFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNF 697 (904)
Q Consensus 651 ~~~~~~l~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 697 (904)
+.....+ ....+++++|.+|..+|++++|+..|++++++.|+.
T Consensus 87 ----~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 87 ----RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp ----HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ----ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3334433 345678999999999999999999999999996543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=8.6e-11 Score=94.53 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcH
Q psy17306 619 IDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFL 698 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 698 (904)
++..+.+|.++.+.|+|++|+..|++++++.|. .....++.+.++.+||.++.++|++++|+.+|+++|+++|+++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~----~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDE----GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh----hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 566789999999999999999988888875443 2234566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy17306 699 DAYINLGNVLKEAR 712 (904)
Q Consensus 699 ~a~~~la~~~~~~g 712 (904)
.++.+++.+...++
T Consensus 81 ~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 81 RANGNLKYFEYIMA 94 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988776543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.00 E-value=8.6e-10 Score=98.64 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=83.7
Q ss_pred HHHHHhhC--chhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCc------------hHHHHHHHHHHHHHcCCHHHH
Q psy17306 539 TKYVYNVE--PDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPL------------LAEAYSNLGNVYKERGQLQEA 604 (904)
Q Consensus 539 ~~~~~~~l--~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A 604 (904)
++.+|..+ |..++..|+|++|+..|++ ++.+.|+ .+.+|.++|.+|..+|++++|
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~-----------Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A 74 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRR-----------AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchh
Confidence 33444544 7788899999999999999 7766553 356899999999999999999
Q ss_pred HHHHHHHHhhCCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCh
Q psy17306 605 LENYRHAVRLKPD-----------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 650 (904)
Q Consensus 605 ~~~~~~al~~~p~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 650 (904)
+..+++++++.|. ...+++++|.+|..+|++++|+..|++++++.|
T Consensus 75 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 75 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999987432 244789999999999999999998888887544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=9.9e-10 Score=88.12 Aligned_cols=82 Identities=22% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhh
Q psy17306 585 AEAYSNLGNVYKERGQLQEALENYRHAVRLKPD-------FIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAI 657 (904)
Q Consensus 585 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 657 (904)
++-.+.+|.++...|++.+|+..|++++++.|. ...++.++|.++.+.|++++|+. .+++++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~-----------~y~~aL 73 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL-----------LTKKLL 73 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHH-----------HHHHHH
Confidence 556789999999999999999999999998543 36799999999999999999999 777777
Q ss_pred hcCcchHHHHHHHHHHHHhC
Q psy17306 658 ETRPDFAVAWSNLGCVFNAQ 677 (904)
Q Consensus 658 ~~~p~~~~a~~~lg~~~~~~ 677 (904)
+++|+++.++.+++.+...+
T Consensus 74 ~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 74 ELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp HHCTTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHh
Confidence 88999999999998776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.90 E-value=1.6e-09 Score=105.27 Aligned_cols=133 Identities=10% Similarity=0.044 Sum_probs=116.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcHHH
Q psy17306 15 AHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 94 (904)
Q Consensus 15 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 94 (904)
+...+..|++++|+..++++++.+|.++.++..+|.+++..|++++|+..|+++++++|+...++..++.++...+...+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHH
Q psy17306 95 ALENYRHAVRL-KPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVR 147 (904)
Q Consensus 95 A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 147 (904)
+...+.+.... .|.....+...+.++...|++++|+..+.++.+..|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 66655443333 455566778889999999999999999999999999876554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.88 E-value=2.6e-09 Score=103.69 Aligned_cols=127 Identities=15% Similarity=0.037 Sum_probs=68.9
Q ss_pred hhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy17306 551 REGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALV 630 (904)
Q Consensus 551 ~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 630 (904)
...|++++|+..+++ +++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++.
T Consensus 7 L~~G~l~eAl~~l~~-----------al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 7 LSEGQLQQALELLIE-----------AIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75 (264)
T ss_dssp TTTTCHHHHHHHHHH-----------HHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH-----------HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345556666666665 566666666666666666666666666666666666666665555555555555
Q ss_pred HcCCHHHHHHHHHHHHhhChhhHHH-hhhcCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHH
Q psy17306 631 AAGDMEQAVQAYVTALQYNPSCYLK-AIETRPDFAVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLD 699 (904)
Q Consensus 631 ~~g~~~~A~~~~~~al~~~~~~~~~-~l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 699 (904)
..+..+++.. ...+ .+..+|.....+...+.++...|++++|++.++++.+..|..+.
T Consensus 76 a~~~~~~a~~-----------~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 76 AAQARKDFAQ-----------GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHHHHHTT-----------SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hccccHHHHH-----------HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 4444444333 2211 11223444455555555555555555555555555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=1.5e-08 Score=91.95 Aligned_cols=120 Identities=13% Similarity=-0.071 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcch
Q psy17306 584 LAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDF 663 (904)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~ 663 (904)
....+...|......|++++|+..|.+++.+.++........ +.+- ......+.+..
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~----------------~~~r~~l~~~~ 66 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV----------------EPFATALVEDK 66 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH----------------HHHHHHHHHHH
Confidence 467888999999999999999999999999987764322111 1111 11112334556
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhcchhHHHHHHHHhhc
Q psy17306 664 AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKEARIFDRANTLFYVSSY 726 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 726 (904)
..++..++.++...|++++|+.+++++++++|.+..+|..++.++...|++.+|+..|+++..
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999844
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.74 E-value=4.5e-08 Score=88.63 Aligned_cols=119 Identities=14% Similarity=0.003 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q psy17306 7 LGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVY 86 (904)
Q Consensus 7 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 86 (904)
...+++..|..+...|++++|+..|.+++...+........ .+. -.......+.+....++..++.++
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~-----w~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQ-----FVEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TST-----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999998875422111 111 112233344556678999999999
Q ss_pred HHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy17306 87 KERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTAL 137 (904)
Q Consensus 87 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 137 (904)
...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999983
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=5.1e-06 Score=67.11 Aligned_cols=83 Identities=7% Similarity=-0.050 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHhcchhHHHHHHHHhhcccCChhhHHHHHH
Q psy17306 664 AVAWSNLGCVFNAQGE---IWLAIHHFEKAVSLDPNF-LDAYINLGNVLKEARIFDRANTLFYVSSYFMITDEDIDVILE 739 (904)
Q Consensus 664 ~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 739 (904)
+.+.|+.|+++.+..+ .++|+..|+.++..+|.+ .+++++||..|.++|++++|..++++++++.|++........
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 6789999999997754 579999999999999977 489999999999999999999999999999999988888877
Q ss_pred HHHHHHH
Q psy17306 740 RCEAKTE 746 (904)
Q Consensus 740 ~~~~~~~ 746 (904)
.++.++.
T Consensus 115 ~Ie~~~~ 121 (124)
T d2pqrb1 115 MVEDKIQ 121 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=1.6e-05 Score=64.15 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhChhhHHHhhhcCcch-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q psy17306 619 IDGYINLAAALVAAGDM---EQAVQAYVTALQYNPSCYLKAIETRPDF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVSLD 694 (904)
Q Consensus 619 ~~a~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~l~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 694 (904)
..+.++.|+++.+..+. .+|+. .+..++..+|.+ .+.++.||.+|.++|+|++|..+++++|+++
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~-----------lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVK-----------ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHH-----------HHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHH-----------HHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 67899999999877654 56777 555566666655 4799999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHH
Q psy17306 695 PNFLDAYINLGNVLKE 710 (904)
Q Consensus 695 p~~~~a~~~la~~~~~ 710 (904)
|++..+....-.+..+
T Consensus 104 P~n~qA~~L~~~Ie~~ 119 (124)
T d2pqrb1 104 RNNKQVGALKSMVEDK 119 (124)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999887766655543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.04 E-value=1.8e-05 Score=67.37 Aligned_cols=111 Identities=21% Similarity=0.199 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHHHHHHHh---
Q psy17306 600 QLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNLGCVFNA--- 676 (904)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~lg~~~~~--- 676 (904)
++++|+.+|+++.+.. ++.+.++||. ....+.++|+..|+ ++.+ .+++.+.+.||.+|..
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~-----------~aa~--~g~~~a~~~Lg~~y~~g~~ 70 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLS-----------KACE--LNSGNGCRFLGDFYENGKY 70 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHH-----------HHHH--TTCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHh-----------hhhc--ccchhhhhhHHHhhhhccc
Confidence 6788999999998774 4566777764 34567888888444 4333 3567889999999886
Q ss_pred -CCCHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHH----hcchhHHHHHHHHhhcccC
Q psy17306 677 -QGEIWLAIHHFEKAVSLDPNFLDAYINLGNVLKE----ARIFDRANTLFYVSSYFMI 729 (904)
Q Consensus 677 -~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~a~~~~~ 729 (904)
..++++|+.+|+++.+. .++.+.++||.+|.. ..+.++|+.+|+++.+...
T Consensus 71 ~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 71 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 56789999999999876 468899999999887 4689999999999987664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.90 E-value=9.7e-05 Score=62.56 Aligned_cols=112 Identities=21% Similarity=0.188 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCcHHHHHH
Q psy17306 22 GDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKE----RGQLQEALE 97 (904)
Q Consensus 22 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 97 (904)
.|+++|+.+|+++.+.. ++.+.+.++. ....++++|+.+++++.+. +++.+.+.+|.+|.. ..++.+|+.
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence 37889999999998764 5566666664 4567899999999998875 568889999999876 567899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy17306 98 NYRHAVRLKPDFIDGYINLAAALVA----AGDMEQAVQAYVTALQYNP 141 (904)
Q Consensus 98 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 141 (904)
+|+++.+. .++.+.+.+|.+|.. ..+..+|+.+|+++.+...
T Consensus 81 ~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999876 468889999999987 4689999999999987654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.072 Score=55.08 Aligned_cols=173 Identities=15% Similarity=0.018 Sum_probs=106.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHH--
Q psy17306 5 AQLGIGLLELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNL-- 82 (904)
Q Consensus 5 ~~~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-- 82 (904)
...-+..|..|...+..|++.++......+ +..|--+-+.+............. -+...+..+|+.+......
T Consensus 3 l~~~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~----~i~~Fl~~~p~~P~~~~lr~~ 77 (450)
T d1qsaa1 3 LDEQRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAV----TVTNFVRANPTLPPARTLQSR 77 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHH----HHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHH----HHHHHHHHCCCChhHHHHHHH
Confidence 345577899999999999999988877765 445643322222211222223333 3455666788876654333
Q ss_pred -HHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChH
Q psy17306 83 -GNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLD 161 (904)
Q Consensus 83 -a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 161 (904)
-..+...+++..-+..+ ...|.+....+.++.+....|+.++|...+..+-......+.....+-..+...|...
T Consensus 78 ~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCC
Confidence 33556677776655443 3467888888899999999999999999988887766666666555555555555544
Q ss_pred HHHHHHHHHHhhHHHHHHcCCHHHHHHHHh
Q psy17306 162 EAKDLYCVRSDLGNLLKALGRLDEAKNLHT 191 (904)
Q Consensus 162 ~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 191 (904)
..... .........|++..|..+..
T Consensus 154 ~~~~~-----~R~~~~l~~~~~~~a~~l~~ 178 (450)
T d1qsaa1 154 PLAYL-----ERIRLAMKAGNTGLVTVLAG 178 (450)
T ss_dssp HHHHH-----HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHcCChhhHHHHHh
Confidence 33211 12223344455555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.93 E-value=0.2 Score=48.43 Aligned_cols=260 Identities=12% Similarity=0.060 Sum_probs=136.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCcH
Q psy17306 13 ELAHREYQAGDYESAERHCMQLWRQETNNTGVLLLLSSIHFQCRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 92 (904)
Q Consensus 13 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 92 (904)
..|..++..|.|+.|..+|... .-+-.+..++...+++..|..++.++ ++...|..+...+......
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp ----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence 4567777888888888888754 12344556777888888888877755 3456777777777666655
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcCChHHHHHHH-----
Q psy17306 93 QEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALGRLDEAKDLY----- 167 (904)
Q Consensus 93 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~----- 167 (904)
.-|..+ ... ....++-.......|...|.+++.+..++.++...+.+...+..++.+|.+.+ .++-++.+
T Consensus 86 ~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~ 160 (336)
T d1b89a_ 86 RLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS 160 (336)
T ss_dssp HHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred HHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence 443221 111 11234444556666777788888888888777776667777777776665433 22222222
Q ss_pred --------------HHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchh
Q psy17306 168 --------------CVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLL 233 (904)
Q Consensus 168 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (904)
..+..+..+|.+.|.++.|+...-.............-............+++..+ +..+|..
T Consensus 161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y---L~~~p~~ 237 (336)
T d1b89a_ 161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY---LEFKPLL 237 (336)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH---HHHCGGG
T ss_pred cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHH---HHcCHHH
Confidence 12334556677777777777766554322111111111111112222222222222 2334432
Q ss_pred HHHH----------HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy17306 234 AEAY----------SNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNP 299 (904)
Q Consensus 234 ~~~~----------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 299 (904)
...+ ..+.....+.++..-...+++.... .++..+...++.+|...++++. .++.++.+.
T Consensus 238 i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 238 LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHHhc
Confidence 2111 1122333444555555555555433 3456788999999999999754 555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=2.2 Score=43.27 Aligned_cols=85 Identities=8% Similarity=-0.114 Sum_probs=53.0
Q ss_pred hhCchhHhhcCChhHHHHHHHHHhhhhhhHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy17306 544 NVEPDLTREGGSIPITLTFECRKLDKSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYI 623 (904)
Q Consensus 544 ~~l~~~~~~~~~~~~A~~~~~~~l~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 623 (904)
..++......+..+.|...... ......+.......++. ....+++..+...+..+-......+...+
T Consensus 256 ~~~a~~~~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~w~~~~-al~~~~~~~~~~~~~~l~~~~~~~~r~~Y 323 (450)
T d1qsaa1 256 DIVAWRLMGNDVTDEQAKWRDD-----------AIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRY 323 (450)
T ss_dssp HHHHHTSCSTTCCHHHHHHHHH-----------HHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHh-----------hcccccchHHHHHHHHH-HHHcCChHHHHHHHHhcCcccccHHHHHH
Confidence 4445555556666777776666 55544444444434443 34557888777777655433333466778
Q ss_pred HHHHHHHHcCCHHHHHH
Q psy17306 624 NLAAALVAAGDMEQAVQ 640 (904)
Q Consensus 624 ~lg~~~~~~g~~~~A~~ 640 (904)
.+|..+...|+.++|..
T Consensus 324 W~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 324 WQADLLLERGREAEAKE 340 (450)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCChhhHHH
Confidence 88888888888888888
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.73 E-value=4.4 Score=38.63 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHcC
Q psy17306 79 YSNLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAGDMEQAVQAYVTALQYNPDLYCVRSDLGNLLKALG 158 (904)
Q Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 158 (904)
.-..|..+.+.|.|+.|...|... ++ +-.+..++...+++..|...+.++ +++..|..+...+....
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ------------CTTTHHHHHHHT----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCc
Confidence 345566666777777777777542 11 334456666777777777776655 34556666666655554
Q ss_pred ChHHHHHHHHHHHhhHHHHHHcCCHHHHHHHHhhcCCCcchhhHHHHHHhhcCCCcchHHHhhHHHHHhhcCchhHHHHH
Q psy17306 159 RLDEAKDLYCVRSDLGNLLKALGRLDEAKNLHTENIKPVTMKVQNAIVCNYGGRKPTTLESAHFSTLAIKQNPLLAEAYS 238 (904)
Q Consensus 159 ~~~~A~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (904)
...-+..+- .....+ +.-..
T Consensus 84 e~~la~i~~---------------------------------------------------------~~~~~~---~d~l~ 103 (336)
T d1b89a_ 84 EFRLAQMCG---------------------------------------------------------LHIVVH---ADELE 103 (336)
T ss_dssp CHHHHHHTT---------------------------------------------------------TTTTTC---HHHHH
T ss_pred HHHHHHHHH---------------------------------------------------------HHhhcC---HHHHH
Confidence 443221100 011122 23334
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy17306 239 NLGNVYKERGQLQEALENYRHAVRLKPDFIDGYINLAAALVAAG 282 (904)
Q Consensus 239 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (904)
.+...|...|.+++.+.+++.++...+.+...+..++.+|.+.+
T Consensus 104 ~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 104 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 46666778889999999999888888888888888888776643
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.55 E-value=1.5 Score=30.79 Aligned_cols=45 Identities=24% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhChhhHHHhhhcCcchHHHHHHH
Q psy17306 621 GYINLAAALVAAGDMEQAVQAYVTALQYNPSCYLKAIETRPDFAVAWSNL 670 (904)
Q Consensus 621 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~p~~~~a~~~l 670 (904)
.+-..+.-+...|+|++||++++++.. .+..++++ +.+..++..|
T Consensus 10 ~~~RrAer~l~~~rydeAIech~kA~~----yl~eA~kl-t~s~~~l~SL 54 (83)
T d2crba1 10 QQSRRADRLLAAGKYEEAISCHRKATT----YLSEAMKL-TESEQAHLSL 54 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHHHTT-CCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHhC-CCcHHHHHHH
Confidence 455677888889999999998877776 66666665 4444444443
|