Psyllid ID: psy17334

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcccccccEEEEcccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEHHHHHHHHHHHHHEcccEEEEEEccccccEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVSTTVQTILdnltspdnwtlAIGAAENASllnltnssfvpkingfddgpqfpayirtpsMVLCSIILCIGVLGNIMVPCVIlkskdmrnsTNIFLMNLSIADLMVLLVCTPTVlvevnskpetwqmgehisntqeeeeeeeeneeeekEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD
Flexible Loop (DISEMBL)
MVSTTVQTILdnltspdnWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVnskpetwqmgehisntqeeeeeeeeneeeekeeeeekeeekeeeeekeeqkeeeeqkeeqqisrrvadkd
Low Complexity Region (SEG)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTqeeeeeeeeneeeekeeeeekeeekeeeeekeeqkeeeeqkeeqqISRRVADKD
Disordered region (IsUnstruct)
*******TILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVN*********************************************************************
Disordered Region (DISOPRED)
******Q**LDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEE*************************************
Disordered Region (DISEMBL)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE***********************************************************
Disordered Region (DISPRO)
*****VQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEH**********************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSTTVQTILDNLTSPDNWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVADKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P30551	444	Cholecystokinin receptor	no	N/A	0.382	0.162	0.378	2e-08
Q9DDN6	385	Neuropeptide Y receptor t	no	N/A	0.329	0.161	0.476	2e-08
Q9TTQ9	422	Probable G-protein couple	yes	N/A	0.574	0.255	0.338	4e-08
P79113	384	Neuropeptide Y receptor t	yes	N/A	0.345	0.169	0.441	4e-08
Q5IS62	381	Neuropeptide Y receptor t	yes	N/A	0.345	0.170	0.441	4e-08
P49146	381	Neuropeptide Y receptor t	no	N/A	0.345	0.170	0.441	4e-08
Q04573	382	Neuropeptide Y receptor t	no	N/A	0.526	0.259	0.348	5e-08
O97772	427	Cholecystokinin receptor	no	N/A	0.382	0.168	0.378	5e-08
P25929	384	Neuropeptide Y receptor t	no	N/A	0.425	0.208	0.380	8e-08
O02835	383	Neuropeptide Y receptor t	no	N/A	0.425	0.208	0.380	9e-08

>sp|P30551|CCKAR_RAT Cholecystokinin receptor type A OS=Rattus norvegicus GN=Cckar PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV---- 116
           ++L SII  + VLGN +V  V++++K MR  TNIFL++L+++DLM+ L C P  L+    
Sbjct: 60  ILLYSIIFLLSVLGNTLVITVLIRNKRMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLL 119

Query: 117 ------EVNSKPETWQMGEHIS 132
                     K  T+ MG  +S
Sbjct: 120 KDFIFGSAVCKTTTYFMGTSVS 141

Receptor for cholecystokinin. Mediates pancreatic growth and enzyme secretion, smooth muscle contraction of the gall bladder and stomach. Has a 1000-fold higher affinity for CCK rather than for gastrin. It modulates feeding and dopamine-induced behavior in the central and peripheral nervous system. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
Rattus norvegicus (taxid: 10116)

>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 64  CSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPE 123
           CSIIL +GV+GN +V  VI+K K MR  TN F+ NL++ADL+V  +C P  LV   +   
Sbjct: 62  CSIIL-LGVIGNSLVIHVIIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTLVY--TLLG 118

Query: 124 TWQMG 128
            W++G
Sbjct: 119 EWKLG 123

Receptor for neuropeptide Y and peptide YY.

Gallus gallus (taxid: 9031)

>sp|Q9TTQ9|GPR83_CANFA Probable G-protein coupled receptor 83 OS=Canis familiaris GN=GPR83 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 13/121 (10%)

Query: 25  AAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSM-----VLCSIILCIGVLGNIMVP 79
           A  NAS    +N SF    N F    ++ A  + P++     V  S I+   + GN++V 
Sbjct: 34  AGPNASHFFWSNYSFSDWQN-FVGRRRYGAESQNPTVKALLVVAYSFIIVFSLFGNVLVC 92

Query: 80  CVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVE-VNSKPETWQMGE---HISNTQ 135
            VI K++ MR++T++F++NL++AD+++ L+ TP  LV  VNS   TW  G+   H+S   
Sbjct: 93  HVIFKNQRMRSATSLFIVNLAVADILITLLNTPFTLVRFVNS---TWVFGKGMCHVSRFA 149

Query: 136 E 136
           +
Sbjct: 150 Q 150

Orphan receptor. Could be a neuropeptide Y receptor.

Canis familiaris (taxid: 9615)

>sp|P79113|NPY2R_BOVIN Neuropeptide Y receptor type 2 OS=Bos taurus GN=NPY2R PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNS 120
           +  CSIIL +GV+GN +V  V++K K MR  TN F+ NL++ADL+V  +C P  L    +
Sbjct: 58  LAYCSIIL-LGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTLTY--T 114

Query: 121 KPETWQMG 128
               W+MG
Sbjct: 115 LMGEWKMG 122

Receptor for neuropeptide Y and peptide YY.

Bos taurus (taxid: 9913)

>sp|Q5IS62|NPY2R_PANTR Neuropeptide Y receptor type 2 OS=Pan troglodytes GN=NPY2R PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNS 120
           +  CSIIL +GV+GN +V  V++K K MR  TN F+ NL++ADL+V  +C P  L    +
Sbjct: 55  LAYCSIIL-LGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTLTY--T 111

Query: 121 KPETWQMG 128
               W+MG
Sbjct: 112 LMGEWKMG 119

Receptor for neuropeptide Y and peptide YY.

Pan troglodytes (taxid: 9598)

>sp|P49146|NPY2R_HUMAN Neuropeptide Y receptor type 2 OS=Homo sapiens GN=NPY2R PE=2 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNS 120
           +  CSIIL +GV+GN +V  V++K K MR  TN F+ NL++ADL+V  +C P  L    +
Sbjct: 55  LAYCSIIL-LGVIGNSLVIHVVIKFKSMRTVTNFFIANLAVADLLVNTLCLPFTLTY--T 111

Query: 121 KPETWQMG 128
               W+MG
Sbjct: 112 LMGEWKMG 119

Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is PYY > NPY > PYY (3-36) > NPY (2-36) > [Ile-31, Gln-34] PP > [Leu-31, Pro-34] NPY > PP, [Pro-34] PYY and NPY free acid.

Homo sapiens (taxid: 9606)

>sp|Q04573|NPY1R_MOUSE Neuropeptide Y receptor type 1 OS=Mus musculus GN=Npy1r PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 13/112 (11%)

Query: 18  NWTLAIGAAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIM 77
           N ++   A+EN+ LL   N          DD     A I T ++   ++I+ +GV GN+ 
Sbjct: 11  NHSIHYNASENSPLLAFEN----------DDCHLPLAVIFTLALAYGAVII-LGVSGNLA 59

Query: 78  VPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE
Sbjct: 60  LIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGE 109

Receptor for neuropeptide Y and peptide YY.

Mus musculus (taxid: 10090)

>sp|O97772|CCKAR_RABIT Cholecystokinin receptor type A OS=Oryctolagus cuniculus GN=CCKAR PE=2 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 10/82 (12%)

Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLV---- 116
           ++L S+I  + VLGN +V  V++++K MR  TNIFL++L+I+DLM+ L C P  L+    
Sbjct: 45  ILLYSLIFLLSVLGNTLVITVLIRNKRMRTVTNIFLLSLAISDLMLCLFCMPFNLIPNLL 104

Query: 117 ------EVNSKPETWQMGEHIS 132
                     K  T+ MG  +S
Sbjct: 105 KDFIFGSALCKTTTYLMGTSVS 126

Receptor for cholecystokinin. Mediates pancreatic growth and enzyme secretion, smooth muscle contraction of the gall bladder and stomach. Has a 1000-fold higher affinity for CCK rather than for gastrin. It modulates feeding and dopamine-induced behavior in the central and peripheral nervous system. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.

Oryctolagus cuniculus (taxid: 9986)

>sp|P25929|NPY1R_HUMAN Neuropeptide Y receptor type 1 OS=Homo sapiens GN=NPY1R PE=2 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 47  DDGPQFP-AYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLM 105
           +D    P A I T ++   ++I+ +GV GN+ +  +ILK K+MRN TNI ++NLS +DL+
Sbjct: 30  NDDCHLPLAMIFTLALAYGAVII-LGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLL 88

Query: 106 VLLVCTPTVLVEVNSKPETWQMGE 129
           V ++C P   V   +  + W  GE
Sbjct: 89  VAIMCLPFTFVY--TLMDHWVFGE 110

Receptor for neuropeptide Y and peptide YY. The rank order of affinity of this receptor for pancreatic polypeptides is NPY > [Pro-34] PYY, PYY and [Leu-31, Pro-34] NPY > NPY (2-36) > [Ile-31, Gln-34] PP and PYY (3-36) > PP > NPY free acid.

Homo sapiens (taxid: 9606)

>sp|O02835|NPY1R_PIG Neuropeptide Y receptor type 1 OS=Sus scrofa GN=NPY1R PE=2 SV=2

 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 47  DDGPQFP-AYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLM 105
           +D    P A I T ++   ++I+ +GV GN+ +  +ILK K+MRN TNI ++NLS +DL+
Sbjct: 30  NDDCHLPLAMIFTLALAYGAVII-LGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLL 88

Query: 106 VLLVCTPTVLVEVNSKPETWQMGE 129
           V ++C P   V   +  + W  GE
Sbjct: 89  VAIMCLPFTFVY--TLMDHWVFGE 110

Receptor for neuropeptide Y and peptide YY.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
328714990	781	PREDICTED: hypothetical protein LOC10016	0.473	0.113	0.741	3e-32
60328183	573	ecdysis triggering hormone receptor subt	0.515	0.169	0.670	8e-32
347968737	832	AGAP002881-PB [Anopheles gambiae str. PE	0.478	0.108	0.711	1e-31
347968739	762	AGAP002881-PA [Anopheles gambiae str. PE	0.478	0.118	0.711	1e-31
60328185	558	ecdysis triggering hormone receptor subt	0.515	0.173	0.670	1e-31
134031934	434	ecdysis triggering hormone receptor isof	0.531	0.230	0.663	2e-31
270014299	461	hypothetical protein TcasGA2_TC012493 [T	0.531	0.216	0.663	2e-31
134031970	451	ecdysis triggering hormone receptor isof	0.531	0.221	0.663	2e-31
288558748	541	ecdysis triggering hormone receptor isof	0.542	0.188	0.638	7e-31
170034662	332	conserved hypothetical protein [Culex qu	0.446	0.253	0.761	7e-31

>gi|328714990|ref|XP_001944756.2| PREDICTED: hypothetical protein LOC100169111 [Acyrthosiphon pisum]

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/89 (74%), Positives = 74/89 (83%)

Query: 43  INGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIA 102
           I   DD   FP YIRT  MV+C IIL +GV+GN+MVP VILKSKDMRNSTNIFLMNLSIA
Sbjct: 41  IQFLDDDLSFPGYIRTTCMVVCVIILGVGVVGNMMVPIVILKSKDMRNSTNIFLMNLSIA 100

Query: 103 DLMVLLVCTPTVLVEVNSKPETWQMGEHI 131
           DLMVLL+CTPTV VEVNS+PETW +GE +
Sbjct: 101 DLMVLLICTPTVFVEVNSRPETWVLGEEL 129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60328183|gb|AAX19163.1| ecdysis triggering hormone receptor subtype-A [Manduca sexta]

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 80/97 (82%)

Query: 33  NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNST 92
           NLT+S+F    + F +  + P YI+  SM  C +I+C+GV+GN+MVP VILK+KDMRNST
Sbjct: 71  NLTDSAFEMPNDNFTEYAEVPYYIKATSMTFCIVIMCLGVIGNVMVPIVILKTKDMRNST 130

Query: 93  NIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           NIFL+NLSIADLMVLLVCTPTVLVEVNSKPETW +G+
Sbjct: 131 NIFLVNLSIADLMVLLVCTPTVLVEVNSKPETWVLGK 167

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968737|ref|XP_003436278.1| AGAP002881-PB [Anopheles gambiae str. PEST] gi|333467866|gb|EGK96735.1| AGAP002881-PB [Anopheles gambiae str. PEST]

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/90 (71%), Positives = 73/90 (81%)

Query: 44  NGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIAD 103
           N   + PQ P YIR  SMV C II+C+GV+GN+MVP VILK+KDMRNSTNIFL NLSIAD
Sbjct: 221 NDSSEMPQIPEYIRATSMVFCIIIMCLGVIGNVMVPIVILKTKDMRNSTNIFLTNLSIAD 280

Query: 104 LMVLLVCTPTVLVEVNSKPETWQMGEHISN 133
           L+VLLVCTPTVLVEVNS PE W +GE + N
Sbjct: 281 LLVLLVCTPTVLVEVNSPPEVWVLGEEMCN 310

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968739|ref|XP_312031.5| AGAP002881-PA [Anopheles gambiae str. PEST] gi|333467865|gb|EAA08029.6| AGAP002881-PA [Anopheles gambiae str. PEST]

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/90 (71%), Positives = 73/90 (81%)

Query: 44  NGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIAD 103
           N   + PQ P YIR  SMV C II+C+GV+GN+MVP VILK+KDMRNSTNIFL NLSIAD
Sbjct: 221 NDSSEMPQIPEYIRATSMVFCIIIMCLGVIGNVMVPIVILKTKDMRNSTNIFLTNLSIAD 280

Query: 104 LMVLLVCTPTVLVEVNSKPETWQMGEHISN 133
           L+VLLVCTPTVLVEVNS PE W +GE + N
Sbjct: 281 LLVLLVCTPTVLVEVNSPPEVWVLGEEMCN 310

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|60328185|gb|AAX19164.1| ecdysis triggering hormone receptor subtype-B [Manduca sexta]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 80/97 (82%)

Query: 33  NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNST 92
           NLT+S+F    + F +  + P YI+  SM  C +I+C+GV+GN+MVP VILK+KDMRNST
Sbjct: 71  NLTDSAFEMPNDNFTEYAEVPYYIKATSMTFCIVIMCLGVIGNVMVPIVILKTKDMRNST 130

Query: 93  NIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           NIFL+NLSIADLMVLLVCTPTVLVEVNSKPETW +G+
Sbjct: 131 NIFLVNLSIADLMVLLVCTPTVLVEVNSKPETWVLGK 167

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|134031934|ref|NP_001076792.1| ecdysis triggering hormone receptor isoform A [Tribolium castaneum] gi|126116542|gb|ABN79653.1| ecdysis triggering hormone receptor isoform A [Tribolium castaneum]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 41  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 99

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G 
Sbjct: 100 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGR 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014299|gb|EFA10747.1| hypothetical protein TcasGA2_TC012493 [Tribolium castaneum]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 68  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 126

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G 
Sbjct: 127 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGR 167

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|134031970|ref|NP_001076793.1| ecdysis triggering hormone receptor isoform B [Tribolium castaneum] gi|126116544|gb|ABN79654.1| ecdysis triggering hormone receptor isoform B [Tribolium castaneum]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 29  ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +S ++L N+S V   N       FP YIRT SMV C II+C+GV+GN+MVP VI K+KDM
Sbjct: 41  SSTIDLYNTSSVSNFNE-SSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDM 99

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           RNSTNIFL+NLS+ADLMVLLVCTPTVLVEVNS+PETW +G 
Sbjct: 100 RNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGR 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288558748|ref|NP_001165737.1| ecdysis triggering hormone receptor isoform B [Bombyx mori] gi|195946982|dbj|BAG68405.1| neuropeptide receptor A6-B [Bombyx mori]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 80/105 (76%), Gaps = 3/105 (2%)

Query: 25  AAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILK 84
           A  N SL   TN++     N F +  + P YI+  SM  C  I+C+GV+GN+MVP VILK
Sbjct: 47  AFRNGSL---TNTTIGYTNNNFTEYAEIPHYIKITSMTFCIAIMCLGVIGNVMVPIVILK 103

Query: 85  SKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
           +KDMRNSTNIFL+NLSIADLMVLLVCTPTVLVEVNSKPETW +G+
Sbjct: 104 TKDMRNSTNIFLVNLSIADLMVLLVCTPTVLVEVNSKPETWVLGK 148

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034662|ref|XP_001845192.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876063|gb|EDS39446.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 71/84 (84%)

Query: 46  FDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLM 105
            +D PQ P YIR  SMV C II+C+GV+GNIMVP VILK+KDMRNSTNIFL NLSIADL+
Sbjct: 137 LNDMPQIPEYIRATSMVFCIIIMCLGVIGNIMVPIVILKTKDMRNSTNIFLTNLSIADLL 196

Query: 106 VLLVCTPTVLVEVNSKPETWQMGE 129
           VLLVCTPTVLVEVNS PE W +GE
Sbjct: 197 VLLVCTPTVLVEVNSPPEVWVLGE 220

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
FB|FBgn0038874	471	ETHR "ETHR" [Drosophila melano	0.436	0.174	0.695	5.3e-28
ZFIN|ZDB-GENE-980526-208	375	npy8br "neuropeptide Y recepto	0.473	0.237	0.353	3.8e-10
UNIPROTKB|F1NK50	420	GPR83-L "Uncharacterized prote	0.468	0.209	0.357	1e-09
RGD|1560028	415	RGD1560028 "similar to RIKEN c	0.585	0.265	0.310	1.3e-09
ZFIN|ZDB-GENE-090327-1	365	ghsrb "growth hormone secretag	0.409	0.210	0.358	1.6e-09
ZFIN|ZDB-GENE-060526-286	351	si:dkey-27p18.2 "si:dkey-27p18	0.531	0.284	0.333	3.1e-09
UNIPROTKB|O02835	383	NPY1R "Neuropeptide Y receptor	0.558	0.274	0.370	3.8e-09
UNIPROTKB|O02813	382	NPY1R "Neuropeptide Y receptor	0.510	0.251	0.373	4.8e-09
MGI|MGI:104963	382	Npy1r "neuropeptide Y receptor	0.563	0.277	0.359	4.8e-09
RGD|3198	382	Npy1r "neuropeptide Y receptor	0.563	0.277	0.359	4.8e-09

FB|FBgn0038874 ETHR "ETHR" [Drosophila melanogaster (taxid:7227)]

 Score = 314 (115.6 bits), Expect = 5.3e-28, P = 5.3e-28
 Identities = 57/82 (69%), Positives = 71/82 (86%)

Query:    50 PQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
             PQ P+YIRT +M  C +I+ +GV+GN+MVP VI+K+KDMRNSTNIFL NLSIADL+VLLV
Sbjct:     3 PQIPSYIRTTAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNSTNIFLTNLSIADLLVLLV 62

Query:   110 CTPTVLVEVNSKPETWQMGEHI 131
             CTPTVLVEVN++PETW +G  +
Sbjct:    63 CTPTVLVEVNTRPETWVLGHEM 84

GO:0008528 "G-protein coupled peptide receptor activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0008188 "neuropeptide receptor activity" evidence=ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0042654 "ecdysis-triggering hormone receptor activity" evidence=NAS;IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-980526-208 npy8br "neuropeptide Y receptor Y8b" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 35/99 (35%), Positives = 61/99 (61%)

Query:    33 NLTNSSFVPKINGFDDGPQFPAYIRTPSMVLC--SIILCIGVLGNIMVPCVILKSKDMRN 90
             +L NSS++      +D P  PA + + + ++   S +L +G++GN  +  VI + K+MRN
Sbjct:     5 HLNNSSWL-----LED-PTCPASLSSTTFLIVAYSTMLAVGLVGNTCLVVVITRQKEMRN 58

Query:    91 STNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
              TNIF++NLS +D++V LVC P  ++   +  + W +GE
Sbjct:    59 VTNIFIVNLSCSDILVCLVCLPVTIIY--TLMDRWILGE 95

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|F1NK50 GPR83-L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 35/98 (35%), Positives = 60/98 (61%)

Query:    43 INGFDDGPQFP--AYIRTPSMVLC---SIILCIGVLGNIMVPCVILKSKDMRNSTNIFLM 97
             +  FD G ++   +  RT   +L    S+I+CI + GN +V  V++K+K M ++T++F++
Sbjct:    50 LGDFDSGTKYEGESQSRTVQALLIIAYSVIICISLFGNTLVCHVVIKNKRMHSATSLFIV 109

Query:    98 NLSIADLMVLLVCTPTVLVEVNSKPETWQMGE---HIS 132
             NL++AD+M+ ++ TP  LV   S   TW  G+   HIS
Sbjct:   110 NLAVADVMITVLNTPFTLVRFVSS--TWVFGKLMCHIS 145

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0004984 "olfactory receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1560028 RGD1560028 "similar to RIKEN cDNA C130060K24 gene" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 37/119 (31%), Positives = 65/119 (54%)

Query:    18 NWTLAIGAAENASLL---NLTNSSFVPK--INGFDDGPQFPAYIRTPSMVLCSIILCIGV 72
             +W L   A + ++LL   NLT + F+ +  +      PQ PA  R   ++   +I  + +
Sbjct:     2 SWNLT--AEQLSALLQLHNLTRAQFIARYGLRPLVLTPQLPARARLALLLAGLLIFALAL 59

Query:    73 LGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHI 131
              GN +V  V+ +SK MR  TNIF+ +L+++DL+++  C P  +++  S  +TW  G  I
Sbjct:    60 FGNALVVYVVTRSKAMRTVTNIFICSLALSDLLIVFFCIPVTMLQNVS--DTWLGGAFI 116

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090327-1 ghsrb "growth hormone secretagogue receptor b" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 29/81 (35%), Positives = 48/81 (59%)

Query:    52 FPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCT 111
             FP  I T   V CS +  +G+ GN++   V+ K KDMR +TN++L +++++DL++ L C 
Sbjct:    37 FPVPILTGITVTCSFLFLVGIAGNLLTILVVTKYKDMRTTTNLYLCSMALSDLLIFL-CM 95

Query:   112 PTVLVEV-NSKPETWQMGEHI 131
             P  L  V   +P  W  G+ +
Sbjct:    96 PLDLYRVWRYRP--WNFGDEL 114

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

ZFIN|ZDB-GENE-060526-286 si:dkey-27p18.2 "si:dkey-27p18.2" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 36/108 (33%), Positives = 63/108 (58%)

Query:    29 ASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
             ++  N +  S   + + ++     P  IR   +V  S+I+ I + GN++V  V++K+K M
Sbjct:    21 STFFNFSLDSMYDRGSNYESESHRPT-IRALLIVAYSVIIIISLFGNVVVCHVVIKNKRM 79

Query:    89 RNSTNIFLMNLSIADLMVLLVCTPTVLVE-VNSKPETWQMGE---HIS 132
              + T++F+MNL+IAD+++ L+ TP  LV  V S   TW  G+   H+S
Sbjct:    80 HSVTSLFIMNLAIADILITLLNTPFTLVRFVYS---TWVFGKVMCHVS 124

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|O02835 NPY1R "Neuropeptide Y receptor type 1" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 43/116 (37%), Positives = 65/116 (56%)

Query:    18 NWTLAIGAAENASLL-NLT--NSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVL 73
             N TL+    EN S+  N +  NS F+   N   D    P A I T ++   ++I+ +GV 
Sbjct:     2 NSTLS-SQVENHSIYYNFSEKNSQFLAFEN---DDCHLPLAMIFTLALAYGAVII-LGVS 56

Query:    74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
             GN+ +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE
Sbjct:    57 GNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGE 110

GO:0005886 "plasma membrane" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O02813 NPY1R "Neuropeptide Y receptor type 1" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 40/107 (37%), Positives = 62/107 (57%)

Query:    27 ENASLL-NLT-NSSFVPKINGFD-DGPQFP-AYIRTPSMVLCSIILCIGVLGNIMVPCVI 82
             EN S+  N + NS F+     F+ D    P A I T ++   ++I+ +GV GN+ +  +I
Sbjct:    10 ENHSIFCNFSENSQFL----AFESDDCHLPLAMIFTLALAYGAVII-LGVTGNLALIMII 64

Query:    83 LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
             LK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE
Sbjct:    65 LKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY--TLMDHWVFGE 109

GO:0005886 "plasma membrane" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007631 "feeding behavior" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA

GO:0001601 "peptide YY receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:104963 Npy1r "neuropeptide Y receptor Y1" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 41/114 (35%), Positives = 64/114 (56%)

Query:    18 NWTLAIGAAENASL-LNLTNSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVLGN 75
             N TL     EN S+  N + +S  P +   +D    P A I T ++   ++I+ +GV GN
Sbjct:     2 NSTL-FSKVENHSIHYNASENS--PLLAFENDDCHLPLAVIFTLALAYGAVII-LGVSGN 57

Query:    76 IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
             + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE
Sbjct:    58 LALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGE 109

GO:0001601 "peptide YY receptor activity" evidence=IDA

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=ISO

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0004983 "neuropeptide Y receptor activity" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007218 "neuropeptide signaling pathway" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0007631 "feeding behavior" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=ISO;IMP

GO:0030424 "axon" evidence=ISO

GO:0030432 "peristalsis" evidence=ISO

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0045907 "positive regulation of vasoconstriction" evidence=ISO

GO:0046888 "negative regulation of hormone secretion" evidence=ISO

GO:0051481 "reduction of cytosolic calcium ion concentration" evidence=ISO

RGD|3198 Npy1r "neuropeptide Y receptor Y1" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 41/114 (35%), Positives = 65/114 (57%)

Query:    18 NWTLAIGAAENASL-LNLTNSSFVPKINGFDDGPQFP-AYIRTPSMVLCSIILCIGVLGN 75
             N TL     EN S+  N++ +S  P +   +D    P A I T ++   ++I+ +GV GN
Sbjct:     2 NSTL-FSRVENYSVHYNVSENS--PFLAFENDDCHLPLAVIFTLALAYGAVII-LGVSGN 57

Query:    76 IMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGE 129
             + +  +ILK K+MRN TNI ++NLS +DL+V ++C P   V   +  + W  GE
Sbjct:    58 LALIIIILKQKEMRNVTNILIVNLSFSDLLVAVMCLPFTFVY--TLMDHWVFGE 109

GO:0001601 "peptide YY receptor activity" evidence=IEA;ISO

GO:0001602 "pancreatic polypeptide receptor activity" evidence=IEA;ISO

GO:0003151 "outflow tract morphogenesis" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0007218 "neuropeptide signaling pathway" evidence=ISO

GO:0007268 "synaptic transmission" evidence=ISO

GO:0007626 "locomotory behavior" evidence=IEA;ISO

GO:0007631 "feeding behavior" evidence=IEA;ISO

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008217 "regulation of blood pressure" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA;ISO;IMP

GO:0030424 "axon" evidence=IDA

GO:0030432 "peristalsis" evidence=IMP

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0040014 "regulation of multicellular organism growth" evidence=IEA;ISO

GO:0045907 "positive regulation of vasoconstriction" evidence=IMP

GO:0046888 "negative regulation of hormone secretion" evidence=IMP

GO:0051481 "reduction of cytosolic calcium ion concentration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	4e-12
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-08
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-07
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-06
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-06
pfam00183	529	pfam00183, HSP90, Hsp90 protein	6e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	9e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	9e-06
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	1e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	1e-05
pfam03985	431	pfam03985, Paf1, Paf1	2e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	2e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	3e-05
pfam09736	141	pfam09736, Bud13, Pre-mRNA-splicing factor of RES	3e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	4e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	4e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	5e-05
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	6e-05
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	6e-05
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	6e-05
pfam03985	431	pfam03985, Paf1, Paf1	7e-05
pfam03344	715	pfam03344, Daxx, Daxx Family	7e-05
pfam00183	529	pfam00183, HSP90, Hsp90 protein	8e-05
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	1e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	1e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	1e-04
pfam03985	431	pfam03985, Paf1, Paf1	2e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	2e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	2e-04
pfam10324	317	pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR	2e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	2e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	2e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	3e-04
pfam12118	261	pfam12118, SprA-related, SprA-related family	3e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	3e-04
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	3e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	3e-04
pfam03985	431	pfam03985, Paf1, Paf1	4e-04
pfam03344	715	pfam03344, Daxx, Daxx Family	4e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	4e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	4e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	4e-04
pfam05285	317	pfam05285, SDA1, SDA1	4e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	4e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	5e-04
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	5e-04
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	5e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	5e-04
PHA03087	335	PHA03087, PHA03087, G protein-coupled chemokine re	5e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	6e-04
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	6e-04
pfam05285	317	pfam05285, SDA1, SDA1	6e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-04
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	6e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	7e-04
pfam05285	317	pfam05285, SDA1, SDA1	7e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	7e-04
PLN02381	1066	PLN02381, PLN02381, valyl-tRNA synthetase	7e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	8e-04
pfam14153	185	pfam14153, Spore_coat_CotO, Spore coat protein Cot	8e-04
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	8e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.001
pfam03985	431	pfam03985, Paf1, Paf1	0.001
pfam08553	794	pfam08553, VID27, VID27 cytoplasmic protein	0.001
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.001
pfam05285	317	pfam05285, SDA1, SDA1	0.001
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.001
pfam03066	146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.001
PTZ00248	319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.001
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.001
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.001
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	0.001
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.001
PRK14156	177	PRK14156, PRK14156, heat shock protein GrpE; Provi	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.001
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	0.001
pfam11831	363	pfam11831, Myb_Cef, pre-mRNA splicing factor compo	0.001
PRK12585	197	PRK12585, PRK12585, putative monovalent cation/H+	0.001
pfam03985	431	pfam03985, Paf1, Paf1	0.002
pfam03344	715	pfam03344, Daxx, Daxx Family	0.002
pfam03344	715	pfam03344, Daxx, Daxx Family	0.002
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.002
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.002
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.002
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	0.002
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.002
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.002
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.002
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.002
pfam05340	565	pfam05340, DUF740, Protein of unknown function (DU	0.002
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.002
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	0.002
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.002
TIGR01651	600	TIGR01651, CobT, cobaltochelatase, CobT subunit	0.002
pfam03985	431	pfam03985, Paf1, Paf1	0.003
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.003
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.003
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.003
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.003
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.003
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.003
pfam02459	548	pfam02459, Adeno_terminal, Adenoviral DNA terminal	0.003
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.003
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.003
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	0.003
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.003
PRK14140	191	PRK14140, PRK14140, heat shock protein GrpE; Provi	0.003
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	0.003
PRK05658	619	PRK05658, PRK05658, RNA polymerase sigma factor Rp	0.003
COG0576	193	COG0576, GrpE, Molecular chaperone GrpE (heat shoc	0.003
pfam10328	275	pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR	0.003
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.003
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.003
cd08045	212	cd08045, TAF4, TATA Binding Protein (TBP) Associat	0.003
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.004
pfam00183	529	pfam00183, HSP90, Hsp90 protein	0.004
pfam03985	431	pfam03985, Paf1, Paf1	0.004
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.004
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.004
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.004
PRK12329	449	PRK12329, nusA, transcription elongation factor Nu	0.004
pfam11081	172	pfam11081, DUF2890, Protein of unknown function (D	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
pfam05285	317	pfam05285, SDA1, SDA1	0.004
PTZ00415	2849	PTZ00415, PTZ00415, transmission-blocking target a	0.004
pfam04712	481	pfam04712, Radial_spoke, Radial spokehead-like pro	0.004
pfam06213	282	pfam06213, CobT, Cobalamin biosynthesis protein Co	0.004
pfam05758	832	pfam05758, Ycf1, Ycf1	0.004
pfam04546	211	pfam04546, Sigma70_ner, Sigma-70, non-essential re	0.004
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.004
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.004
pfam10320	257	pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR	0.004
smart00786	196	smart00786, SHR3_chaperone, ER membrane protein SH	0.004

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 80  CVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEH 130
            VIL++K +R  TNIFL+NL++ADL+ LL   P  L         W  G+ 
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--YYLVGGDWPFGDA 49

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 27/44 (61%), Positives = 34/44 (77%)

Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
           EEEEEEE EEEE+EEEEE+EEE+EEE E+    E  E +++Q I
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
           +++EEEEEEEE EEEE+EEEEE+EEE+E EE    +  E  QK+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 17/83 (20%)

Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEK-----------------EEEEEKEEE 158
            E   + ET      + +   E+E   EN+ E K                 EEEEE+EEE
Sbjct: 813 DEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEE 872

Query: 159 KEEEEEKEEQKEEEEQKEEQQIS 181
           +EEEEE+EE++EEEE++ E+ +S
Sbjct: 873 EEEEEEEEEEEEEEEEENEEPLS 895

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 34/53 (64%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           +E+++ EE  +++  E+E  K+ EKE    +E++K+ EE  ++  + ++ A++
Sbjct: 84  KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 13/53 (24%), Positives = 37/53 (69%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           +E+ +++E+ + EE ++++  E+E+ ++ EKE    +E++K+ ++ +++ A K
Sbjct: 78  EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130

Length = 387

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 43/63 (68%)

Query: 125 WQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
            ++ E     +EEE++E++ +    +++EE+EEE++E++E+E+++EEEE +EE++     
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472

Query: 185 ADK 187
             K
Sbjct: 473 KKK 475

Length = 482

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           +  EEEE+EEEEE+EEE+EEEEE+EE++ EE    E   +R+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQ 903

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 41/54 (75%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           + E++ EEE +E++K+    K++E+EEEEEKE+++EE+E++EE+    +  +++
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 22/46 (47%), Positives = 39/46 (84%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           +    +++ EEEE+E+E+++EE++EEEEE EE+KEEEE+K+++Q +
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478

Length = 482

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 24/43 (55%), Positives = 35/43 (81%)

Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
             +E  +EEEE E+EEK+EEEEK  +KEEE ++EE+KEE+++K
Sbjct: 31  VEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKK 73

Length = 529

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 20/47 (42%), Positives = 36/47 (76%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           I    E+ E++ E E++EK+++    ++KEEEEE+E++K+EEE++EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 20/54 (37%), Positives = 39/54 (72%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           ++ EEE++E +++    ++++EEE+EE+E+KEE+KEEEE++ E++       K 
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.5 bits (106), Expect = 9e-06
 Identities = 18/54 (33%), Positives = 40/54 (74%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           +++ EEE++ ++++    ++KEEE+EEE+EK+E+++EEE++E ++      +K 
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473

Length = 482

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            Q EE ++++  E+E+ ++ EKE    +E++K  Q EE  ++   +
Sbjct: 87  QQAEELQQKQAAEQERLKQLEKERLAAQEQKK--QAEEAAKQAALK 130

Length = 387

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 24/44 (54%), Positives = 38/44 (86%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           E+E E+E  +EEE+EE+EEK+EE+E+  +KEE+ +EEE+KEE++
Sbjct: 28  EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71

Length = 529

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 38/62 (61%)

Query: 118 VNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           V + P  W++   +S++ +EEEE EE   +E E+E+  E + E +E+K+ +  + + ++E
Sbjct: 78  VRNLPAMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKE 137

Query: 178 QQ 179
           + 
Sbjct: 138 KP 139

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           +E+E+EEE +  ++ EEEE E+ +EE  +  E    E   +    S   ADK
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 26/61 (42%), Positives = 39/61 (63%)

Query: 119 NSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
             K    Q  E     +EE ++ EE  E E++EEEE EEE+E+++E+EE+KE EEQ  ++
Sbjct: 12  EEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKE 71

Query: 179 Q 179
           Q
Sbjct: 72  Q 72

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 23/45 (51%), Positives = 35/45 (77%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
           EE  EEEE EEEE+EEEE++ EE+E E+E+EE++ E +   E+++
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/43 (58%), Positives = 35/43 (81%)

Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           +E EEEE+ EEE+EEEEE+EEE++E EE+E + EEEE++ E  
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEAD 479

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 26/63 (41%), Positives = 33/63 (52%)

Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
                 P           + EEEEEEEE EEEE++E EE+E E EEEEE+ E     E++
Sbjct: 426 STSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485

Query: 176 EEQ 178
            E 
Sbjct: 486 MEG 488

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRRVA 185
           G  I   ++ EE+E E EE+E++EE+EKE  K   ++EE+E++ EE E+ + + ++R   
Sbjct: 9   GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYAD 68

Query: 186 DKD 188
           D+D
Sbjct: 69  DED 71

This entry is characterized by proteins with alternating conserved and low-complexity regions. Bud13 together with Snu17p and a newly identified factor, Pml1p/Ylr016c, form a novel trimeric complex. called The RES complex, pre-mRNA retention and splicing complex. Subunits of this complex are not essential for viability of yeasts but they are required for efficient splicing in vitro and in vivo. Furthermore, inactivation of this complex causes pre-mRNA leakage from the nucleus. Bud13 contains a unique, phylogenetically conserved C-terminal region of unknown function. Length = 141

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
           G+     +EEEEEEEE EEEE+EEEEE+E E+    E  E ++++
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            +     +  EEEEEE EEEE+EE+E +EEE E+EEE+EE + +   +EE +
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/51 (43%), Positives = 41/51 (80%)

Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           E E+E  +EEEE+E+EE+KEEE++  +++EE  EEEE++E+++ +++V + 
Sbjct: 30  EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80

Length = 529

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
           +EEEEEE E EE ++EE+ ++  EKE  + K E++ E E+K+
Sbjct: 102 EEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           +++E+EEE EEE + EE ++EE+ +E  EKE  K + E++ E +  ++
Sbjct: 97  DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQK 144

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 115 LVEVNSKPETWQ--MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
           L E N K + +   +GE    T   EE E + +EE+ ++EE ++++KE+ +E +E+++++
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430

Query: 173 EQK 175
           E+K
Sbjct: 431 ERK 433

Length = 434

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            EE +E+E+EEEE+  +E +EEE E+ EE+  Q  E+   E   
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
                EEEEEEE EEEE+E+E E+EE ++EEEE+E + +   ++E +  S 
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 23/44 (52%), Positives = 36/44 (81%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
             EEEEEE+E ++EE+E+  +KEEE +EEEEKEE+K++ ++ +E
Sbjct: 36  PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79

Length = 529

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--- 170
           V+V+  +  E +   +    + +  EE+ + +E+++ EE ++++  E+E  K+ +KE   
Sbjct: 53  VMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112

Query: 171 EEEQKEEQQISRRVA 185
            +EQK++ + + + A
Sbjct: 113 AQEQKKQAEEAAKQA 127

Length = 387

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           S   +        +     +E EE E  E+EEEEE+EEE+EE+E +EE+ E+EE++EE +
Sbjct: 418 SSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 35/53 (66%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           ++ + +   ++E+EEEEE E E +E +EE++ ++  E+E  + K E+ ++ E+
Sbjct: 89  KVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENER 141

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
             +  T+EEEEE+     EE+ +EE +E+++E+++E+ E K  +   EEQ
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
             + EE +E+ +EEE++  +E EEE+ E+ E+E  +  E+   E
Sbjct: 364 PIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            +EEEEEEEE EE+E EEEE ++EE+EEE E +   EEE +   + 
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 24/44 (54%), Positives = 28/44 (63%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           EEEEEEEE E+E +EEE E EEE+EE E     +EE E   E  
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 38/60 (63%)

Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           S P         S +   +E EEE   EE+EEEEE+EEE+E+E E+EE ++EEE++E + 
Sbjct: 419 SDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEA 478

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 33/57 (57%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
              Q+  ++  E ++E    EE + + KEE+ ++EE +++++++ ++   +R  D+ 
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 117  EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
            E   K E  +  E  +  +  EE ++  E+++K EE +K EE E++  +  +KE EE K+
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703

Query: 177  EQQISRRVADK 187
             +++ ++ A++
Sbjct: 1704 AEELKKKEAEE 1714

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 30/59 (50%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
                 ++    E+  ++ E+  ++ +E++K+ EE K +Q  E + K E +  ++  ++
Sbjct: 89  ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKE--EEEQKEEQQ 179
            ET Q  ++I +     E E+ N E + EEEE++EEE+EE+E++   KE  ++E+ EE  
Sbjct: 365 KETEQ--DYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422

Query: 180 ISRRVADKD 188
           +  +  D D
Sbjct: 423 VESKYEDSD 431

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor Srw

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 66  IILCIGVLGNIMVPCVILKSKDMR-NSTNIFLMNLSIADLMVLL 108
           I+  IG + NI    +IL  K MR +S NI ++ ++I D++ +L
Sbjct: 5   ILSIIGFIINI-FHLIILTRKSMRTSSINIIMIGIAICDIITML 47

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srw is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz. Length = 317

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 32/44 (72%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
             EEEE+ +E+    E++ KE E E+ +E++E+ EEEE++EE++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 31/48 (64%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
              +  E++ +E   E+  EE+E+ EEE+EEEEE++E  ++++  ++ 
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
            N +E+  +E EN+EE+K +EE+ E E+ E+EE  E  EE  + + +++    
Sbjct: 11  ENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDEN 63

Length = 211

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 20/42 (47%), Positives = 34/42 (80%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           EEEEE+EE +EEE++  +++EE  EEEE++E++K+ ++ KE 
Sbjct: 39  EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80

Length = 529

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 37/49 (75%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
            E   +  ++ EEEEE+ +   EEE+E++E+ ++E+++EE++EE+E+K+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 39/55 (70%)

Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           E  + G    + ++++++ EE EE+    +EE++EE E+ +++++++EEEE+KE+
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           + +++  E N+EE   EEE ++++ E  ++  ++++E++Q+EE+Q+ R +  +D
Sbjct: 68  ELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQV-RELKARD 120

This protein is found in bacteria. Proteins in this family are typically between 234 to 465 amino acids in length. There is a conserved GEV sequence motif.Most members are annotated as being SprA-related. Length = 261

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
              Q E EE  E E+ E+ EE+ +  E     E E + E+E ++ + 
Sbjct: 396 EALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442

Length = 449

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           P T    E   +  EE EE+EE  E+ ++  +E++EE EE EE+     +      +  S
Sbjct: 15  PPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSS 74

Query: 182 RR 183
           + 
Sbjct: 75  QE 76

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEK--EEQKEEEEQKEEQQISRRVA 185
                N  EE E++   E   K E E+ E+ +E EEEK  EE    ++ K+ +++  +  
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKN 349

Query: 186 DKD 188
             D
Sbjct: 350 GLD 352

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           EEE+  +E+EEEE E+ EE+  +  E+   E   +     E +      +D D
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
              +EEEEEEEE +E E+EE E++EEE+E E +   ++E E   E   
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           + E EE +E E+ ++  E+E  + K E+  + E+K++E  KE+
Sbjct: 108 EVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           EEEE E E  +EE++ +E  E+E  + + ++ ++ E +QKE  +   +
Sbjct: 105 EEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
           M E      E +EE++  EE+ + EE EKEE  E+ EE  E K EE + E
Sbjct: 13  MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62

Length = 211

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 15/44 (34%), Positives = 35/44 (79%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            ++E+EE+++++ +EEEE+ +   EEE+E++E  ++E+ +EE++
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           E  ++ E IS  +EEE  + E EE  + E+ E+ EE     E     E+E + E++
Sbjct: 381 EDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436

Length = 449

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           + E+EEE++E  +K +E+  EE  EE+EE+  ++EE E ++E+
Sbjct: 131 DSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 32/49 (65%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
             + EE+++++EE  EE+EE  + +++E++ ++  +++    E+ + RR
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERR 168

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 38/53 (71%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
            E+ E++  EE+++++++    +K+EEEE+EE++++EE+KEE++       ++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 15/44 (34%), Positives = 35/44 (79%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           T++ ++  E+ E++ +EE++EK+++    ++KEE++EEE++K+E
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452

Length = 482

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 142 EENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
            ++EEEE EEE   E E+E+  E + + +E++++E  +    
Sbjct: 94  SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTE 135

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           E     + E +EE++ +EE+ E EE ++EE  E+ E+  + + EE K+E
Sbjct: 14  EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62

Length = 211

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 130 HISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQ 179
           +IS++     + EE E++   E   K E +  E+ EE EE+K EEE    ++
Sbjct: 286 YISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 62  VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV 109
           V+ S I   G++GNI+V  V+ K+K ++   +I+L+NL+++DL+ ++ 
Sbjct: 45  VVYSTIFFFGLVGNIIVIYVLTKTK-IKTPMDIYLLNLAVSDLLFVMT 91

Length = 335

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
             E+  ++E E+    E+  K+ E+  ++ +E+QK+ EE K +Q    +   +
Sbjct: 85  AAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE 137

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 16/48 (33%), Positives = 32/48 (66%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
                 E++ +E E E+ +EE+EK+EE+EEEEE+E++  +++  ++  
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 32/46 (69%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
            + E+EEE +E  K+ +E+ +EE  EE+E+E  +EEE + E+++ S
Sbjct: 130 SDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKAS 175

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 15/52 (28%), Positives = 38/52 (73%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
           +++++  ++ EE  E+ ++E E++  EE+E E+EKE+++E E ++E ++ ++
Sbjct: 572 LASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE 163
            E +      + +    EEEE+EEEEE+EEE  EEE
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 121 KPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEE--EKEEQKEEEEQKEEQ 178
           K +  Q  E +   Q  E+E  +  E+E+   +E++++ EE       +QK+ EE   + 
Sbjct: 82  KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141

Length = 387

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 36/56 (64%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           GE I    ++E E  ++E+EE+++E  K+ +++ +EE  E+ EEE  +EE+  + +
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 12/49 (24%), Positives = 32/49 (65%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           ++ EE+++++EE ++E+EE  + E +E+++ ++  ++   +E     RR
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRR 169

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           + ++ E++   E E E K+++EEK +EKE ++ K  QKE + + + QQ S
Sbjct: 4   TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQAS 53

Length = 1066

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 33/48 (68%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
             EEE +EE +E+++E+++E+ E K  +   EEQ++ EE++ ++Q  +
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 15/70 (21%), Positives = 36/70 (51%)

Query: 116 VEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
           V+   +     M +     + +E+EEE+   +E  + +E+E++ E EE ++E++  E ++
Sbjct: 16  VQPKLEEAKANMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPER 75

Query: 176 EEQQISRRVA 185
           E+    +   
Sbjct: 76  EDIAEQQEKE 85

Bacillus spores are protected by a protein shell consisting of over 50 different polypeptides, known as the coat. This family of proteins has an important morphogenetic role in coat assembly, it is involved in the assembly of at least 5 different coat proteins including CotB, CotG, CotS, CotSA and CotW. It is likely to act at a late stage of coat assembly. Length = 185

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 17/61 (27%), Positives = 40/61 (65%)

Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
           M    +   ++++E+E+ +++++E++EE+EEE+EE +  +++ EE+E  E+    +   D
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVD 204

Query: 187 K 187
           K
Sbjct: 205 K 205

Length = 2849

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 14/61 (22%), Positives = 39/61 (63%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           G   +  + ++  E+  ++ E+E++E+K++    ++++EE++EE+E+KEE++       +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Query: 188 D 188
           +
Sbjct: 464 E 464

Length = 482

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 23/49 (46%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 131 ISNTQEEEEEEEENEEEEK--EEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           + + +EEEE+EE+ EEEEK  ++EEE +EE+E+EE+K++ K+ +E   E
Sbjct: 35  VPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83

Length = 529

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           +  + E  +E+++EEEE+  ++ EEEE E+ +EE  Q  E  
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           +EEE+EEEE EE+E E   ++  + EE EE + + + E+      ++
Sbjct: 391 EEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSLA 437

This is a family of fungal and plant proteins and contains many hypothetical proteins. VID27 is a cytoplasmic protein that plays a potential role in vacuolar protein degradation. Length = 794

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/53 (30%), Positives = 38/53 (71%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           ++E+EE+++++ E+EEE+    ++EE+EE E+  +E++++EE++   +   K 
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 123 ETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
             W   E     +  + E+EE ++E  ++ +E  +E+  EE++EE  EEEE + E+
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 18/54 (33%), Positives = 37/54 (68%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
            E  S+  E+EEE++E  ++ KE+ +E+  E++EEE  EE++ E E+++  +++
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELA 178

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
           Q+ + ++  + EEEEE E   +EK EE   + E+E     E ++   E++   +  R
Sbjct: 174 QLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFER 230

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/42 (38%), Positives = 33/42 (78%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQK 169
           G+H+  ++E+E +++E +EEE+++EE+ +E++ EEEE   +K
Sbjct: 103 GQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           +    EE+ EE   + EE+EEE++  E ++E+EE E+++EEE+  E  +
Sbjct: 271 VVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319

Length = 319

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/30 (56%), Positives = 25/30 (83%)

Query: 144 NEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
           N E++ EEEE+++EE+EEEEE+ E+ E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
             ++  Q++EEEE+E+EEEE+EEEE +E E EE   
Sbjct: 340 TWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 14/78 (17%)

Query: 31  LLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRN 90
           L+N+ N    P I+          YI+    +   II  +G+ GN  +  +IL  K ++ 
Sbjct: 85  LINIKNKCMYPSIS---------EYIK----IFYIIIFILGLFGNAAI-IMILFCKKIKT 130

Query: 91  STNIFLMNLSIADLMVLL 108
            T+I++ NL+I+DL+ ++
Sbjct: 131 ITDIYIFNLAISDLIFVI 148

Length = 417

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 21/34 (61%), Positives = 24/34 (70%)

Query: 139 EEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEE 172
               E EEEE+EEEE  EEE+EEEEE+E   EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK------EEQQI 180
           M E I N + EEE E    EE  EE  E+  EK E E   E+ +E E K      E Q I
Sbjct: 1   MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNI 60

Query: 181 SRR 183
            RR
Sbjct: 61  QRR 63

Length = 177

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 10/57 (17%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 123 ETWQMG-EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           E  Q        ++++++++++ ++++K+++ EK++EKE E++ E+  +   +    
Sbjct: 79  EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 13/56 (23%), Positives = 32/56 (57%), Gaps = 8/56 (14%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEE--------KEEEKEEEEEKEEQKEEEEQKEEQQ 179
           S++  +  +++ ++++ ++E           K+E  EE+E +EE+K  EE+K  ++
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREE 179

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEE---EKEEEKEEEEEKEEQKEEEEQKEEQQI 180
            S+  +  +++ ++++ E E      E E+ K+E  E++E++EEE+  EE++ 
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKA 176

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           +  EEEEEE EE E+E EE+  +    +   EE KE+EE +   Q+ +R
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVIQR 196

This family is a region of the Myb-Related Cdc5p/Cef1 proteins, in fungi, and is part of the pre-mRNA splicing factor complex. Length = 363

>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit G; Reviewed

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 20/54 (37%), Positives = 35/54 (64%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           ++E+ E+   E EE EE  E E  +E+ +E+E+Q+E+E ++EEQ I  +  D +
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSE 177

Length = 197

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           +  + EE +E+E++EEE+  +E +EEE E  E++  + +++    S      D
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 21/41 (51%), Positives = 34/41 (82%)

Query: 141 EEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           +E  EEE  EEEEE+EEE+EEEE++ E++E E+++EE+++ 
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 117 EVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKE 176
           E     E  +  E     +E+E EEEE E+EE+EEE E +   EEE E   + + + ++ 
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499

Query: 177 EQQISRRVAD 186
           E+   RR ++
Sbjct: 500 EEDAERRNSE 509

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEK--EEEEEKEEQKEEEEQKEEQQISRR 183
           + + +  ++  E ++  +  +E E + +EEK  +EE EK+++++ +E KE++Q   R
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 12/55 (21%), Positives = 33/55 (60%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
            +E  ++ ++  ++  E ++E +  +E E + +E+K ++E+ E++Q  +   DK+
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425

Length = 434

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 114 VLVEVNSKPETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEE-EKEEEEEKEEQKEEE 172
           VLV+  +  +           Q+++   ++ +E +K+ E++ EE EK+   E+  QKE E
Sbjct: 41  VLVDPGAVAQQAN-----RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELE 95

Query: 173 EQKEEQQISRR 183
           ++   ++ +++
Sbjct: 96  QRAAAEKAAKQ 106

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 19/44 (43%), Positives = 35/44 (79%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           T+EEE+ +E+    EK+ +E + E+ +EE+EK+E++EEEE++E+
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEE-EKEEEKEEEEEKEEQKEEE 172
              ++  +EE  E+ + E E+K  EE E+E+EKE+E E+E ++E E
Sbjct: 574 SSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
           +++    +EE +E    + +    +EEE+EEEEE+EE+  EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320

Length = 330

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 15/43 (34%), Positives = 30/43 (69%)

Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
           +  EE+    +N   + ++E+E E++ +EE+++EE++EEEE K
Sbjct: 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181

Length = 2849

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
           E+++EEEE E+EE+EEEEE+ EE E EE   
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 140 EEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
                 EEE+EEEEE  EE+EEEEE+EE+  EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 12/53 (22%), Positives = 40/53 (75%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           ++ E I   ++E EE+++ + ++K+ +++K+++K+++++K++ K E++ ++E 
Sbjct: 66  ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740)

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQK 175
            EEEEE E EE EE  EKE  K  +E+ EE +EEEE K
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEE-EEEEELK 176

This family consists of several uncharacterized plant proteins of unknown function. Length = 565

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
               E++E++ + E+E EE EE+ EE++EE   E +KE EE+ E  
Sbjct: 72  AANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESN 117

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
              + +EEE+E    E+KE++ + E+E EE EE+ E+++EE   E ++ + 
Sbjct: 61  EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEE 173
            M E   +   EE+ +EE+ ++++ +  E  E   EE E  ++ EE+E
Sbjct: 217 DMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264

Length = 620

>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 14/56 (25%), Positives = 32/56 (57%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
           ++ E + +  E E+EE+ ++++  E E+E++ E E E ++    +E E  + +  S
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESES 253

This model describes Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobT in the aerobic pathway (P. denitrificans) is not a homolog of cobT in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 600

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 14/52 (26%), Positives = 22/52 (42%)

Query: 128 GEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            E  S+  EEEE E+  EE  +  E+   E   +     E K ++E   +  
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 15/42 (35%), Positives = 29/42 (69%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
             +++E EEEE+EE E +E ++EE+ ++  +KE  + K E++
Sbjct: 95  GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKR 136

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 14/43 (32%), Positives = 33/43 (76%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           EE+ +  + EE+E++E+ + E+++EEEEE++E+K+++  +  +
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           +Q EEEE  + E EE+ E E+ E  +E+   +E     E++ E++ 
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDED 435

Length = 449

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 10/50 (20%), Positives = 30/50 (60%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRV 184
            ++EE +EE+EE  K E++E +++ +++++   ++   E++  ++     
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEK 177

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE 164
            EEEEEEE E  E+EEEEE+EEE+  EEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
            E EEEEE EEE  EEEEE+EEE+E   E+E
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 134 TQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQ 168
                E EEE EEEE+  EEE+EEE+EEE   EE+
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333

This protein is covalently attached to the terminii of replicating DNA in vivo. Length = 548

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           +E EEE  EEE ++EE+ +++ +E+E+ ++  ++E+ ++E      + D  
Sbjct: 43  KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
             +    E   EE +++ EE+ ++E   E  E E E   +    ++K + Q
Sbjct: 232 SRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQ 282

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 12/66 (18%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 120 SKPETWQMGEHISNTQEEEEEEEENEEEEKE--EEEEKEEEKEEEEEKEEQKEEEEQKEE 177
              +        S +   + E   ++EE K+  +E E ++ K++++++EE++ ++ +K++
Sbjct: 152 KHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQ 211

Query: 178 QQISRR 183
           ++  R+
Sbjct: 212 EEEERK 217

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 127 MGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           M E     +EE EE E  E  E E EEE  EE+ E E  +E++ +  + E +
Sbjct: 1   MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52

Length = 191

>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 133 NTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQI 180
              EEE EE E EE  ++E EE+  E+E E E  ++++ +  + E ++
Sbjct: 6   EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKL 53

Length = 191

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
             +   EE+      E EE +++++EEEE++E  +     E +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215

Length = 619

>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
             +   E +      E E+ ++ E+EEE+E++ ++    +E ++  +V +K
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEK 223

Length = 619

>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 25/51 (49%), Positives = 30/51 (58%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           +       EE EE E  EEE+ EEEE EEE E EEE++E  E E Q EE +
Sbjct: 6   QKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELK 56

Length = 193

>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 70  IGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC----TPTVLVE---VNSKP 122
            G++ N ++  + LK   ++NS  I   N +I++ ++  +      P  L++   +    
Sbjct: 6   FGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFLPELL 65

Query: 123 ETWQMGEHISNT 134
            +  +G  I   
Sbjct: 66  NSH-IGGLILLG 76

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srx is part of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 275

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 13/53 (24%), Positives = 34/53 (64%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           +++ +++EE   EE + ++  E+E+ ++ EKE  K +E+QK+ ++  ++   +
Sbjct: 78  EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLE 130

Length = 387

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           Q  E +E     E  +   EK E K+  EE  E+  EE   + ++  R+
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433

Length = 564

>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 15/52 (28%), Positives = 33/52 (63%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVAD 186
           Q E EEEE+ +EEE+E      + + E+   +++ +E +++E++++  R A+
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAAN 172

The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. Each TAF, with the help of a specific activator, is required only for the expression of subset of genes and is not universally involved for transcription as are GTFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and is found in core histones, TAFS and many other transcription factors. TFIID has a histone octamer-like substructure. TAF4 domain interacts with TAF12 and makes a novel histone-like heterodimer that binds DNA and has a core promoter function of a subset of genes. Length = 212

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 10/38 (26%), Positives = 28/38 (73%)

Query: 150 EEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
            EE EKE+++  +E +E++  + +++++++  ++VA+K
Sbjct: 92  PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129

Length = 158

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
           QE  ++ E+     +E++++ EE  ++   K++Q EE   K    
Sbjct: 100 QERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144

Length = 387

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRR 183
           +EEEE+  + EEE  EEEE++E++K+ ++ KE   E E   + + I  R
Sbjct: 48  KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTR 96

Length = 529

>gnl|CDD|217829 pfam03985, Paf1, Paf1

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
              S  +++     +  + E+ +E+E EEE++  +E EE++ E+ ++E  Q
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399

Members of this family are components of the RNA polymerase II associated Paf1 complex. The Paf1 complex functions during the elongation phase of transcription in conjunction with Spt4-Spt5 and Spt16-Pob3i. Length = 431

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 145 EEEEKEEEEEKEEEKEEEEEKEEQKEEEEQ-KEEQQISR 182
             ++KE+EEE+EEE E EE  EE++ +E   KE  ++ R
Sbjct: 95  GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKR 133

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 17/53 (32%), Positives = 37/53 (69%)

Query: 135  QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
            ++ EE++++ EE +K EE+EK+  +  ++E EE K+ EE K+++   ++ A++
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 15/53 (28%), Positives = 31/53 (58%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
           Q++ EE +  +  E + + E E EK+ +EE ++Q EEE + +    +++ A +
Sbjct: 118 QKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 135 QEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQ 178
           +E  E E+    EE     E     E+E E E++ EE + +EE+
Sbjct: 403 EERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446

Length = 449

>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 122 PETWQMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQIS 181
               +  E +    EE  E E+ E  E++    +     E+E ++E + EE Q EE++ +
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448

Query: 182 R 182
           R
Sbjct: 449 R 449

Length = 449

>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           ++EEE+ + + +E EE++EE ++ E+  +E+ EE E+ EE+  +   A   
Sbjct: 18  KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSS 68

This family is conserved in dsDNA adenoviruses of vertebrates. The function is not known. Length = 172

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADK 187
               + +EEE E EE+E+ + E E    E  +E E  + + EEE+ +  ++      ++
Sbjct: 94  SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEE 152

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 14/51 (27%), Positives = 32/51 (62%)

Query: 132 SNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISR 182
           S+ + E  + E+ EE+++  ++ KE+  EE  E++E++  EE++ E +  +
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional

 Score = 36.9 bits (85), Expect = 0.004
 Identities = 15/49 (30%), Positives = 35/49 (71%)

Query: 129 EHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
           E +S       ++++ +E+E +++EE +EE+EEEEE+ +  ++E++++E
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191

Length = 2849

>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKE 166
             E+++EE E+E++EEEEE+EE +E E E+ 
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373

This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologues, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene. Length = 481

>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEE-------KEEQKEEEEQKEEQQISRRVADKD 188
            E  + E+NE+E+  +E+E +++ EEEE        ++     EE +  +  +   +  D
Sbjct: 216 PESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADD 275

This family consists of several bacterial cobalamin biosynthesis (CobT) proteins. CobT is involved in the transformation of precorrin-3 into cobyrinic acid. Length = 282

>gnl|CDD|218734 pfam05758, Ycf1, Ycf1

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 131 ISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQ 179
            S T+E EEE +   E   E +  K+E++   EE      EE++  ++ 
Sbjct: 229 TSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKT 277

The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene. Length = 832

>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 10/42 (23%), Positives = 25/42 (59%)

Query: 136 EEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEE 177
                  E+E +E++ E++ +++++E+E+ EE+ +     EE
Sbjct: 38  AATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79

The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function. Length = 211

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 137 EEEEEEENEEEEKEEEEEKEEEKEEEE----EKEEQKEEEEQKEEQQ 179
           E+E+++  +  ++EE+EEKEEEK +       K+  K + E+KE+ +
Sbjct: 27  EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAK 73

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 16/51 (31%), Positives = 33/51 (64%)

Query: 138 EEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEEEEQKEEQQISRRVADKD 188
           +EEE+E +EEEK +   K + K+  + K E+KE+ ++++E++  R + +  
Sbjct: 38  DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDT 88

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 68  LCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLL 108
             IG+ GN+++  +  K K +R+  +  +    +ADL+ L 
Sbjct: 1   SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLS 41

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srsx is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. Length = 257

>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 126 QMGEHISNTQEEEEEEEENEEEEKEEEEEKEEEKEEEEEKEEQKEE 171
           Q G   +  ++ +++EE   EE KE      ++    ++ E +K++
Sbjct: 151 QAGLWYAERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196

This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs). Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG4219|consensus	423		99.48
KOG4220|consensus	503		99.27
PHA03234	338	DNA packaging protein UL33; Provisional	99.24
PHA02834	323	chemokine receptor-like protein; Provisional	98.94
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.86
PHA03235	409	DNA packaging protein UL33; Provisional	98.81
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.78
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.17
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.53
KOG2087|consensus	363		96.44
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	93.82
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	92.97
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	92.57
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	92.06
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	91.69
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	87.84
KOG2927|consensus	372		84.96
PF03344	713	Daxx: Daxx Family; InterPro: IPR005012 Daxx is a u	84.04
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	82.62

>KOG4219|consensus

Probab=99.48  E-value=2.1e-14  Score=122.64  Aligned_cols=86  Identities=26%  Similarity=0.402  Sum_probs=77.1

Q ss_pred             CCCCCccchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccc
Q psy17334         49 GPQFPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMG  128 (188)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg  128 (188)
                      ....|.+.+.++.++|+++++++++||++|||++..+|++|+.+|+|++|||+||+++++++.++...+.  ....|.||
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~ya--l~~~W~~G  104 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYA--LHQEWYFG  104 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHhccccc
Confidence            3456677888899999999999999999999999999999999999999999999999999999877644  44889999


Q ss_pred             cccccccc
Q psy17334        129 EHISNTQE  136 (188)
Q Consensus       129 ~~~Cki~~  136 (188)
                      .++|++..
T Consensus       105 ~f~C~f~n  112 (423)
T KOG4219|consen  105 SFYCRFVN  112 (423)
T ss_pred             cceeeecc
Confidence            99999864

>KOG4220|consensus

Probab=99.27  E-value=1e-12  Score=112.59  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccc
Q psy17334         58 TPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNT  134 (188)
Q Consensus        58 ~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki  134 (188)
                      ++++++..++.++.++||++|++.+...|+|++..|||+++||+|||+++.+.+|++.++.+.  ++|++|..+|.+
T Consensus        31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lm--g~W~LG~~~Cdl  105 (503)
T KOG4220|consen   31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLM--GYWPLGPLVCDL  105 (503)
T ss_pred             EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHH--cccccchHHHHH
Confidence            346677788899999999999999999999999999999999999999999999999886544  899999999975

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.24  E-value=1.2e-12  Score=111.65  Aligned_cols=77  Identities=14%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEe--eecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVI--LKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISN  133 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i--~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Ck  133 (188)
                      .+.++.++|.+++++|++||++|++++  .+++++|+++|+|++|||++|++++++ +|+.++.   ....|+||..+||
T Consensus        31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~---~~~~w~fG~~lCk  106 (338)
T PHA03234         31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLN---REALFNFNQAFCQ  106 (338)
T ss_pred             HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHH---HhCCccCchhHHH
Confidence            567788999999999999999999854  455677899999999999999999875 5554432   2357999999999


Q ss_pred             ccc
Q psy17334        134 TQE  136 (188)
Q Consensus       134 i~~  136 (188)
                      +..
T Consensus       107 ~~~  109 (338)
T PHA03234        107 CVL  109 (338)
T ss_pred             HHH
Confidence            853

>PHA02834 chemokine receptor-like protein; Provisional

Probab=98.94  E-value=2.5e-10  Score=96.66  Aligned_cols=76  Identities=21%  Similarity=0.500  Sum_probs=61.3

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+.++.+++.+++++|++||+++++++.+++++ +++|+|++|||++|++. ++++|+.+...   ...|.+|...|++.
T Consensus        27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~---~~~w~~g~~~C~~~  101 (323)
T PHA02834         27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHND---LNEWIFGEFMCKLV  101 (323)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHH---cCCcCCcchHHHhH
Confidence            455788999999999999999999888776654 56899999999999986 55688765422   24699999999975


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus       102 ~  102 (323)
T PHA02834        102 L  102 (323)
T ss_pred             H
Confidence            3

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.86  E-value=5.1e-10  Score=98.17  Aligned_cols=76  Identities=22%  Similarity=0.536  Sum_probs=62.3

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++.+++++|++||+++++++. +|++|++++++++|||++|++.++ .+|+.+...   .+.|.||...|++.
T Consensus        97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~---~~~W~fg~~~Ck~~  171 (417)
T PHA02638         97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE---FDQWIFGDFMCKVI  171 (417)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH---hccccccccchhhH
Confidence            4456778899999999999999997665 488899999999999999998754 588776422   36799999999985


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus       172 ~  172 (417)
T PHA02638        172 S  172 (417)
T ss_pred             H
Confidence            3

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.81  E-value=1.8e-09  Score=94.59  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=56.9

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeee-cCc-CCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILK-SKD-MRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISN  133 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~-~~~-l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Ck  133 (188)
                      .+.+..+++.+++++|++||++|++++.+ +|+ .++..++|++|||++|++. ++++|+.+.   .....|.+|...|+
T Consensus        31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~---~~~~~~~~g~~~Ck  106 (409)
T PHA03235         31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIML---SNQGLLSGSVAGCK  106 (409)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHH---hcCccccCCCCeeh
Confidence            56688899999999999999999987543 332 2356689999999999986 456887653   12233445678999


Q ss_pred             ccc
Q psy17334        134 TQE  136 (188)
Q Consensus       134 i~~  136 (188)
                      +..
T Consensus       107 ~~~  109 (409)
T PHA03235        107 FAS  109 (409)
T ss_pred             hHH
Confidence            853

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.78  E-value=7.1e-09  Score=87.66  Aligned_cols=76  Identities=28%  Similarity=0.514  Sum_probs=63.1

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+.+..+++.+++++|++||+++++++.++ ++|++.++|+.|||++|++.++. .|..+.  ......|.+|...|++.
T Consensus        39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~--~~~~~~~~~~~~~C~~~  114 (335)
T PHA03087         39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIY--YYILFQWSFGEFACKIV  114 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHH--HHhCCCCCCCcHHHHHH
Confidence            455788888999999999999999998887 88999999999999999987764 665542  33447899999999864

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.17  E-value=5.5e-08  Score=76.86  Aligned_cols=61  Identities=38%  Similarity=0.659  Sum_probs=51.9

Q ss_pred             cccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccccc
Q psy17334         74 GNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQE  136 (188)
Q Consensus        74 GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~~  136 (188)
                      ||+++++++.++|++|++.++|++|||++|++.++...|..+.....  ..|.++...|++..
T Consensus         1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--~~~~~~~~~C~~~~   61 (257)
T PF00001_consen    1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--DDWIFSSFLCRIFG   61 (257)
T ss_dssp             HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--SSCTSHHHHHHHHH
T ss_pred             CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--cccccccccccccc
Confidence            89999999999999999999999999999999999888876654332  68999999998753

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.53  E-value=9.3e-06  Score=66.80  Aligned_cols=47  Identities=34%  Similarity=0.618  Sum_probs=43.2

Q ss_pred             HHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceee
Q psy17334         69 CIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVL  115 (188)
Q Consensus        69 l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i  115 (188)
                      ++|++||+++++++.++|++|+|+++++..+|++|++.++..+|...
T Consensus         2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~   48 (257)
T PF10320_consen    2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFML   48 (257)
T ss_pred             EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            57999999999999999999999999999999999999887777665

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>KOG2087|consensus

Probab=96.44  E-value=0.0022  Score=54.94  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEE
Q psy17334         59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVE  117 (188)
Q Consensus        59 ~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~  117 (188)
                      ++-+..-++.+++++||++|++.+...+...+...+++.|||++|+++++....+..++
T Consensus        26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD   84 (363)
T KOG2087|consen   26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVD   84 (363)
T ss_pred             eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhh
Confidence            34455566778899999999999888888788899999999999999988755554443

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.82  E-value=0.015  Score=48.79  Aligned_cols=48  Identities=33%  Similarity=0.475  Sum_probs=38.9

Q ss_pred             HHHHHhhcccceeeEeeecCcCCC-cchhHhHHhHHHHHhhhhhccceee
Q psy17334         67 ILCIGVLGNIMVPCVILKSKDMRN-STNIFLMNLSIADLMVLLVCTPTVL  115 (188)
Q Consensus        67 i~l~gl~GN~lvi~~i~~~~~l~~-~~~~fi~nLa~aDLl~~l~~~P~~i  115 (188)
                      +.++|+++|++.++++.| |.+|+ ++|.+++.+|++|++..+..++..+
T Consensus         6 ~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~   54 (318)
T PF10324_consen    6 LSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWEL   54 (318)
T ss_pred             EeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999888887765 55564 8999999999999999887766554

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=92.97  E-value=0.015  Score=46.33  Aligned_cols=49  Identities=14%  Similarity=0.100  Sum_probs=32.7

Q ss_pred             CcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccccc
Q psy17334         86 KDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQE  136 (188)
Q Consensus        86 ~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~~  136 (188)
                      ++++...+.+++||.++|++.++..+...+..+  ..+.-.-+...|.+++
T Consensus        30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l--~~~~i~~~s~~C~aqG   78 (201)
T PF11710_consen   30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWL--ARGGIIAPSPFCQAQG   78 (201)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCeeCCCCchhhhH
Confidence            455667788999999999999987554222211  2233445667888865

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=92.57  E-value=0.04  Score=46.60  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhc
Q psy17334         59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC  110 (188)
Q Consensus        59 ~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~  110 (188)
                      .+.++..+..+++++|-++++..+++.|++|++.+-++.-++++|++..+..
T Consensus         8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~   59 (303)
T PF05462_consen    8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVAS   59 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence            4556666778888999999999999999999999999999999999866543

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=92.06  E-value=0.11  Score=43.76  Aligned_cols=55  Identities=18%  Similarity=0.299  Sum_probs=41.6

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEee---ecCcCCCcchhHhHHhHHHHHhhhhhc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVIL---KSKDMRNSTNIFLMNLSIADLMVLLVC  110 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~---~~~~l~~~~~~fi~nLa~aDLl~~l~~  110 (188)
                      ...+..++.++.+++|++||+.++.+..   ++++.-.|.+..+.+||++.++.....
T Consensus         5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~   62 (303)
T PF05296_consen    5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVI   62 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            4556778888889999999999876654   223334588999999999988766543

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.69  E-value=0.05  Score=44.83  Aligned_cols=44  Identities=34%  Similarity=0.514  Sum_probs=39.5

Q ss_pred             HHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhc
Q psy17334         67 ILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVC  110 (188)
Q Consensus        67 i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~  110 (188)
                      +.++|++.|.++++.+.+.+++|++.+++-.+.|++|.+.+++.
T Consensus         3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~   46 (274)
T PF10328_consen    3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIF   46 (274)
T ss_pred             eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999988753

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.84  E-value=0.094  Score=43.75  Aligned_cols=49  Identities=22%  Similarity=0.404  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhcccceeeEeeec-CcCCCcchhHhHHhHHHHHhhhhhcc
Q psy17334         63 LCSIILCIGVLGNIMVPCVILKS-KDMRNSTNIFLMNLSIADLMVLLVCT  111 (188)
Q Consensus        63 ~~~~i~l~gl~GN~lvi~~i~~~-~~l~~~~~~fi~nLa~aDLl~~l~~~  111 (188)
                      ++.+++.+|++.|+++++++.++ ++.-+...+++.|-|+.|++.++...
T Consensus         4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~   53 (292)
T PF10317_consen    4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF   53 (292)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999887655 33334568999999999999876543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>KOG2927|consensus

Probab=84.96  E-value=0.25  Score=42.39  Aligned_cols=18  Identities=6%  Similarity=0.021  Sum_probs=10.3

Q ss_pred             eeeEEeccC--CCccccccc
Q psy17334        113 TVLVEVNSK--PETWQMGEH  130 (188)
Q Consensus       113 ~~i~~~~~~--~~~W~fg~~  130 (188)
                      +.++++++.  .+-|.|.+.
T Consensus       243 F~I~~il~~g~~g~W~FPNL  262 (372)
T KOG2927|consen  243 FGITWILTGGKHGFWLFPNL  262 (372)
T ss_pred             HHHHHHHhCCCCceEeccch
Confidence            333434445  578887765

>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins

Probab=84.04  E-value=0.32  Score=45.77  Aligned_cols=10  Identities=20%  Similarity=-0.044  Sum_probs=0.0

Q ss_pred             cchhHhHHhH
Q psy17334         91 STNIFLMNLS  100 (188)
Q Consensus        91 ~~~~fi~nLa  100 (188)
                      ..|-|.+||.
T Consensus       344 l~~~~~~~lt  353 (713)
T PF03344_consen  344 LWYNFGCHLT  353 (713)
T ss_dssp             ----------
T ss_pred             cccccccccc
Confidence            3466667665

Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=82.62  E-value=0.79  Score=38.97  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=43.7

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhh
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV  109 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~  109 (188)
                      .+.++++.+++..++..+-.+.+++++.+.+.+|.+.|-+..-|++.|++...+
T Consensus        31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~   84 (313)
T PF10321_consen   31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI   84 (313)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence            445677777777777777788888888887777889999999999999997754

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
4dkl_A	464	Crystal Structure Of The Mu-Opioid Receptor Bound T		4e-05
4djh_A	480	Structure Of The Human Kappa Opioid Receptor In Com		8e-05
4ea3_B	434	Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI		1e-04
4ej4_A	461	Structure Of The Delta Opioid Receptor Bound To Nal		8e-04

>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 61  MVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVN 119
           M L SI+  +G+ GN +V  VI++   M+ +TNI++ NL++AD +     T T+    VN
Sbjct: 21  MALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA----TSTLPFQSVN 76
Query: 120 SKPETWQMG 128
               TW  G
Sbjct: 77  YLMGTWPFG 85

>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 45  GFDDGPQFPAYIRTPSM-----VLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNL 99
           G +D    PA+I +P++      + S++  +G++GN +V  VI++   M+ +TNI++ NL
Sbjct: 6   GSEDAQLEPAHI-SPAIPVIITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNL 64
Query: 100 SIADLMV 106
           ++AD +V
Sbjct: 65  ALADALV 71

>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 25  AAENASLLNLTNSSFVPKINGFDDGPQFPAYIRTPSMVLCSIILCIG-VLGNIMVPCVIL 83
           A   A  L  T ++++ K  G       P  ++  ++V   + +C+G +LGN +V  VIL
Sbjct: 97  AQAAAEQLKTTRNAYIQKYLG----AFLPLGLKV-TIVGLYLAVCVGGLLGNCLVMYVIL 151
Query: 84  KSKDMRNSTNIFLMNLSIADLMVLL 108
           +   M+ +TNI++ NL++AD +VLL
Sbjct: 152 RHTKMKTATNIYIFNLALADTLVLL 176

>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 63  LCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTV-LVEVNSK 121
           L S +  +G+LGN++V   I++   ++ +TNI++ NL++AD +     T T+        
Sbjct: 20  LYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALA----TSTLPFQSAKYL 75
Query: 122 PETWQMGE 129
            ETW  GE
Sbjct: 76  METWPFGE 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.43
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.27
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.26
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.24
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.24
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.21
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.21
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.18
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.16
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.14
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.14
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.12
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.12
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.1
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.07
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.07
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.04
2lot_A	64	Apelin receptor; membrane protein; NMR {Homo sapie	96.71

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.43  E-value=1.1e-14  Score=128.10  Aligned_cols=82  Identities=18%  Similarity=0.380  Sum_probs=68.9

Q ss_pred             cchhhHHHHHHHHHHHHhhcccceeeEeeecCcC---CCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccc
Q psy17334         55 YIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM---RNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHI  131 (188)
Q Consensus        55 ~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l---~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~  131 (188)
                      +.++++.++|++++++|++||++||+++.+.|++   |+++|+|++|||++|++++++++|+.++.+....+.|+||..+
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~  109 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAG  109 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHH
Confidence            4566788899999999999999999998887654   4788999999999999999999998887666566889999999


Q ss_pred             ccccc
Q psy17334        132 SNTQE  136 (188)
Q Consensus       132 Cki~~  136 (188)
                      |++..
T Consensus       110 C~~~~  114 (510)
T 4grv_A          110 CRGYY  114 (510)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99753

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.27  E-value=7.1e-13  Score=110.22  Aligned_cols=76  Identities=26%  Similarity=0.366  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         58 TPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        58 ~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+..+++++++++|++||+++++++.++|++|+++|+|++|||++|++.+++.+|..+....  .+.|.+|...|++.
T Consensus        33 ~~~~~~~~~i~~~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~--~~~~~~~~~~C~~~  108 (364)
T 2ks9_A           33 VLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV--HNEWYYGLFYCKFH  108 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--HTSCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccchHHHHHhH
Confidence            44578889999999999999999999999999999999999999999998888887665333  36799999999875

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.26  E-value=2.8e-13  Score=115.94  Aligned_cols=79  Identities=18%  Similarity=0.287  Sum_probs=69.9

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.+..+.  ...|.+|...|++.
T Consensus        22 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--~~~~~~~~~~C~~~   99 (467)
T 3uon_A           22 EVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV--IGYWPLGPVVCDLW   99 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--SSSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccCCcchHhHH
Confidence            5667888899999999999999999999999999999999999999999999988998776443  36899999999975


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus       100 ~  100 (467)
T 3uon_A          100 L  100 (467)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.24  E-value=8.3e-13  Score=107.28  Aligned_cols=77  Identities=26%  Similarity=0.470  Sum_probs=65.5

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+.++.++|.+++++|++||+++++++.++|++|+++|+|++|||++|+++++. +|+.+...   ...|.+|...|++.
T Consensus        10 ~~~i~~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~-~p~~~~~~---~~~~~~~~~~c~~~   85 (296)
T 2lnl_A           10 NKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT-LPIWAASK---VNGWIFGTFLCKVV   85 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHH-HHHHHHHH---HSSSCCSSHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHh-hhHHHhhc---cCCCccchhHHHHH
Confidence            556788889999999999999999999999999999999999999999998765 66555422   25699999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus        86 ~   86 (296)
T 2lnl_A           86 S   86 (296)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.24  E-value=3.2e-13  Score=118.05  Aligned_cols=78  Identities=24%  Similarity=0.337  Sum_probs=68.9

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.++.++  .+.|.+|...|++.
T Consensus        39 ~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~--~~~w~~~~~~C~~~  116 (500)
T 2rh1_A           39 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL--MKMWTFGNFWCEFW  116 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH--HTSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCcCCcchhhHH
Confidence            4556778899999999999999999999999999999999999999999999988998776443  36899999999875

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.21  E-value=3.8e-13  Score=115.71  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=66.9

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+.++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.++..+ ....|.+|...|++.
T Consensus        37 ~~~~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~-~~~~~~~~~~~C~~~  115 (481)
T 3pbl_A           37 PHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEV-TGGVWNFSRICCDVF  115 (481)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-TTSCCCSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccCcchhhhH
Confidence            4456778889999999999999999999999999999999999999999999888998775333 347899999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus       116 ~  116 (481)
T 3pbl_A          116 V  116 (481)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.21  E-value=1.3e-12  Score=107.48  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=68.2

Q ss_pred             cchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccc
Q psy17334         55 YIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNT  134 (188)
Q Consensus        55 ~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki  134 (188)
                      +...++.+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|..+....  .+.|.+|...|++
T Consensus        36 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~--~~~~~~~~~~C~~  113 (349)
T 1u19_A           36 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL--HGYFVFGPTGCNL  113 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH--HTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHh--cCeeeCChhHHHH
Confidence            34557778889999999999999999999999999999999999999999999988887765333  3679999999987


Q ss_pred             c
Q psy17334        135 Q  135 (188)
Q Consensus       135 ~  135 (188)
                      .
T Consensus       114 ~  114 (349)
T 1u19_A          114 E  114 (349)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.18  E-value=1.9e-12  Score=111.86  Aligned_cols=79  Identities=25%  Similarity=0.443  Sum_probs=68.0

Q ss_pred             ccchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccc
Q psy17334         54 AYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISN  133 (188)
Q Consensus        54 ~~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Ck  133 (188)
                      ...+.++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++ +++|+.++.+.   ..|.+|...|+
T Consensus        45 ~~~~~~~~~~~~~i~~~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~-~~~p~~~~~~~---~~~~~~~~~C~  120 (502)
T 3odu_A           45 NFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV---ANWYFGNFLCK  120 (502)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHH---TCCCSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHh---cCCcCCchhhh
Confidence            346678889999999999999999999999999999999999999999999985 56887765433   36999999998


Q ss_pred             ccc
Q psy17334        134 TQE  136 (188)
Q Consensus       134 i~~  136 (188)
                      +..
T Consensus       121 ~~~  123 (502)
T 3odu_A          121 AVH  123 (502)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            753

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.14  E-value=2.5e-12  Score=109.78  Aligned_cols=78  Identities=29%  Similarity=0.498  Sum_probs=68.2

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++++++++|++||+++++++.+.+++|+++|+|++|||++|++++++ +|+.+..+.  .+.|.+|...|++.
T Consensus        16 ~~~~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~--~~~~~~~~~~C~~~   92 (464)
T 4dkl_A           16 TAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYL--MGTWPFGNILCKIV   92 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HSSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hCCcccccchhhhH
Confidence            567788899999999999999999999999999999999999999999998877 887766443  36799999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus        93 ~   93 (464)
T 4dkl_A           93 I   93 (464)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.14  E-value=1.8e-12  Score=110.47  Aligned_cols=79  Identities=23%  Similarity=0.342  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++++++++++++|++||+++++++.+++++|+++|+|++|||++|++++++.+|+.+..++  .+.|.+|...|++.
T Consensus         7 ~~~~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~--~~~~~~~~~~C~~~   84 (452)
T 3rze_A            7 QLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL--MSKWSLGRPLCLFW   84 (452)
T ss_dssp             --CGGGTHHHHHHHHHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHH--SSSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCccCCchhHhHH
Confidence            4456788899999999999999999999999999999999999999999999888998876543  36899999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus        85 ~   85 (452)
T 3rze_A           85 L   85 (452)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.12  E-value=4e-12  Score=109.14  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=67.7

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.+..+    ..|.++...|++.
T Consensus        20 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~----~~~~~~~~~C~~~   95 (488)
T 3eml_A           20 GSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS----TGFCAACHGCLFI   95 (488)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHT----TCCEECHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccccchHHHHH
Confidence            556788899999999999999999999999999999999999999999999988899877532    3688999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus        96 ~   96 (488)
T 3eml_A           96 A   96 (488)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.12  E-value=3.7e-12  Score=109.56  Aligned_cols=80  Identities=15%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             cchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccc
Q psy17334         55 YIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNT  134 (188)
Q Consensus        55 ~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki  134 (188)
                      ..+.++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++ +|+.+... .....|.+|...|++
T Consensus        18 ~~~~~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~-~~~~~~~~-~~~~~~~~~~~~C~~   95 (484)
T 3vw7_A           18 WLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFKISYY-FSGSDWQFGSELCRF   95 (484)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HTTSCCCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HhcCCcccchhHHhH
Confidence            3667888999999999999999999999999999999999999999999999765 55544322 234689999999987


Q ss_pred             cc
Q psy17334        135 QE  136 (188)
Q Consensus       135 ~~  136 (188)
                      ..
T Consensus        96 ~~   97 (484)
T 3vw7_A           96 VT   97 (484)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.10  E-value=5.6e-12  Score=110.87  Aligned_cols=75  Identities=24%  Similarity=0.354  Sum_probs=66.9

Q ss_pred             hhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         58 TPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        58 ~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .++.+++++++++|++||++|++++.+++++|+++|+|++|||++|++++++++|+.++.   ....|.++...|++.
T Consensus        64 ~~~~~~~~~i~~~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~---~~~~~~~~~~~c~~~  138 (520)
T 3v2y_A           64 KLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS---GATTYKLTPAQWFLR  138 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS---GGGGTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc---cccceeeCccccchH
Confidence            678888999999999999999999999999999999999999999999999888877653   346799999999874

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.07  E-value=7.9e-12  Score=109.45  Aligned_cols=79  Identities=25%  Similarity=0.356  Sum_probs=69.4

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      ...++.+++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.+..+.  .+.|.+|...|++.
T Consensus       181 ~~~~~~i~~~ii~~~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~--~~~~~~~~~~C~~~  258 (514)
T 3sn6_R          181 WVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL--TKTWTFGNFWCEFW  258 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH--HTSCCSCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHH--cCCeeCCcchhhhH
Confidence            5567788899999999999999999999999999999999999999999999988998776443  36899999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus       259 ~  259 (514)
T 3sn6_R          259 T  259 (514)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.07  E-value=4.9e-12  Score=102.35  Aligned_cols=79  Identities=25%  Similarity=0.379  Sum_probs=68.8

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNTQ  135 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki~  135 (188)
                      .+.+..+++.+++++|++||+++++++.+++++|+++|+|++|||++|++.+++.+|+.+...  ..+.|.+|...|++.
T Consensus        10 ~~~~~~~~~~~~~~~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~--~~~~~~~~~~~C~~~   87 (315)
T 4amj_A           10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV--VRGTWLWGSFLCELW   87 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HHSSCCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHH--hcCCeeccccHHHHH
Confidence            456778888999999999999999999999999999999999999999999888888776543  336899999999875


Q ss_pred             c
Q psy17334        136 E  136 (188)
Q Consensus       136 ~  136 (188)
                      .
T Consensus        88 ~   88 (315)
T 4amj_A           88 T   88 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.04  E-value=9.5e-12  Score=105.80  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=66.9

Q ss_pred             cchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCccccccccccc
Q psy17334         55 YIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHISNT  134 (188)
Q Consensus        55 ~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~Cki  134 (188)
                      ....+.++++++++++|++||+++++++.+++++|+++|+|++|||++|++++++++|+.+...    ..|.+|...|++
T Consensus        29 ~~~~~~~~i~~~i~~~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~----~~~~~~~~~C~~  104 (447)
T 4eiy_A           29 MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS----TGFCAACHGCLF  104 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH----TTCEEEHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccCccHHHH
Confidence            3556788889999999999999999999999999999999999999999999988899776522    468888889987


Q ss_pred             c
Q psy17334        135 Q  135 (188)
Q Consensus       135 ~  135 (188)
                      .
T Consensus       105 ~  105 (447)
T 4eiy_A          105 I  105 (447)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.04  E-value=1.8e-11  Score=105.02  Aligned_cols=78  Identities=23%  Similarity=0.357  Sum_probs=66.8

Q ss_pred             chhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhh-ccceeeEEeccCCCccccccccccc
Q psy17334         56 IRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLV-CTPTVLVEVNSKPETWQMGEHISNT  134 (188)
Q Consensus        56 ~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~-~~P~~i~~~~~~~~~W~fg~~~Cki  134 (188)
                      ...++.+++++++++|++||+++++++.+++++|++.|+|++|||++|++++++ ++|+.+...  ....|.+|...|++
T Consensus        33 ~~~~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~--~~~~~~~~~~~C~~  110 (448)
T 2z73_A           33 VYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISC--FLKKWIFGFAACKV  110 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHH--HTTSCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHH--hcCCccCCHHHHHH
Confidence            456677888999999999999999999999999999999999999999999876 478766533  34689999999987


Q ss_pred             c
Q psy17334        135 Q  135 (188)
Q Consensus       135 ~  135 (188)
                      .
T Consensus       111 ~  111 (448)
T 2z73_A          111 Y  111 (448)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A

Probab=96.71  E-value=7.1e-05  Score=47.80  Aligned_cols=31  Identities=16%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHHHhhcccceeeEeeecCcCC
Q psy17334         59 PSMVLCSIILCIGVLGNIMVPCVILKSKDMR   89 (188)
Q Consensus        59 ~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~   89 (188)
                      +++++|+++|++|++||+++++++.+++.-+
T Consensus        30 ~lp~~Y~lvFvlGl~GN~lvl~v~~~~~~~~   60 (64)
T 2lot_A           30 LIPAIYMLVFLLGTTGNGLVLWTVFRKKGHH   60 (64)
T ss_dssp             SSHHHHHHTTTTTTTSSSSHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeeEecccc
Confidence            7888999999999999999999988776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-18

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.6 bits (195), Expect = 1e-18
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 32  LNLTNSSFVPKINGFDDGPQF---PAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDM 88
           +  +N + V  +    + PQ+     +  +       +++ +G   N +   V ++ K +
Sbjct: 11  VPFSNKTGV--VRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKL 68

Query: 89  RNSTNIFLMNLSIADLMVLLVCTPTV 114
           R   N  L+NL++ADL ++     T 
Sbjct: 69  RTPLNYILLNLAVADLFMVFGGFTTT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.17

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=1.3e-12  Score=105.78  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=68.6

Q ss_pred             CCccchhhHHHHHHHHHHHHhhcccceeeEeeecCcCCCcchhHhHHhHHHHHhhhhhccceeeEEeccCCCcccccccc
Q psy17334         52 FPAYIRTPSMVLCSIILCIGVLGNIMVPCVILKSKDMRNSTNIFLMNLSIADLMVLLVCTPTVLVEVNSKPETWQMGEHI  131 (188)
Q Consensus        52 ~~~~~~~~~~~~~~~i~l~gl~GN~lvi~~i~~~~~l~~~~~~fi~nLa~aDLl~~l~~~P~~i~~~~~~~~~W~fg~~~  131 (188)
                      .+.+...++++++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+...  ..+.|.++...
T Consensus        32 ~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~--~~~~~~~~~~~  109 (348)
T d1u19a_          32 AEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS--LHGYFVFGPTG  109 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHTSCTTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhh--ccCccccCchh
Confidence            3344556778888889999999999999999999999999999999999999999988888776533  33678888888


Q ss_pred             cccc
Q psy17334        132 SNTQ  135 (188)
Q Consensus       132 Cki~  135 (188)
                      |++.
T Consensus       110 c~~~  113 (348)
T d1u19a_         110 CNLE  113 (348)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8764