Psyllid ID: psy17364

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MLHSKSSFLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQTQAATAG
cccccHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHccccccEEEEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHccHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEcccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccEEEEEEEEEEccccccccccHHHHHHcc
ccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccEcEEEEEEEEcccEEEEEEEEEccHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEEEccccccccccccHHHHHHHcccEEEEEEEEEEccccccccccHHHHHHHc
MLHSKSSFLARFFHASANQLTTNKSLLGKlrkktgysftnckKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNytktqvqpqepfaKVFLDTaqlqslagpenkslADHVAILISSVGENLVLRRAACVtvnedhdvagfthpspglehtgpilgkfgslmvyqdlktgdkqqNVQNVARQLCQHVigmnpksigseedtpnedpeeetIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRfecgegceeseETQTQAATAG
MLHSKSSFLARFFhasanqlttnksllgklrKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKasklagrktsQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIgmnpksigseedTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEgceeseetqtqaatag
MLHSKSSFLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSeedtpnedpeeetIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFecgegceeseetqtqaataG
*******FLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVI**********************IMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEG***************
***********FFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSL*****KSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKS***********PEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQTQAATAG
MLHSKSSFLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKS************EEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECG*****************
***SKSSFLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLA*PENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEE************
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MLHSKSSFLARFFHASANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQTQAATAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
Q17PI0307 Elongation factor Ts, mit N/A N/A 0.932 0.947 0.447 1e-68
B0WC25317 Elongation factor Ts, mit N/A N/A 0.932 0.917 0.44 2e-68
Q9VJC7318 Elongation factor Ts, mit yes N/A 0.881 0.864 0.415 1e-60
Q9CZR8324 Elongation factor Ts, mit yes N/A 0.887 0.854 0.436 3e-60
A1L2P7312 Elongation factor Ts, mit N/A N/A 0.923 0.923 0.423 3e-60
P43896338 Elongation factor Ts, mit yes N/A 0.855 0.789 0.440 1e-58
Q9QYU2324 Elongation factor Ts, mit yes N/A 0.871 0.839 0.436 3e-58
P43897325 Elongation factor Ts, mit yes N/A 0.846 0.812 0.427 1e-56
B5X5B4309 Elongation factor Ts, mit N/A N/A 0.897 0.906 0.404 8e-56
C3YEM5331 Elongation factor Ts, mit yes N/A 0.939 0.885 0.398 1e-53
>sp|Q17PI0|EFTS_AEDAE Elongation factor Ts, mitochondrial OS=Aedes aegypti GN=AAEL000331 PE=3 SV=1 Back     alignment and function desciption
 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/302 (44%), Positives = 190/302 (62%), Gaps = 11/302 (3%)

Query: 9   LARFF-HASANQL--TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKE 65
           L RF  H +  +L  T  KS L  LRKKTGY+F NCKKAL+++  DL KAE+WLQEQA+ 
Sbjct: 6   LTRFVGHGTGLRLYATAEKSSLATLRKKTGYTFANCKKALEMHNNDLAKAEQWLQEQAQA 65

Query: 66  LGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNY 125
           +GW+KA+KL GR T+QGLI I V+     MVE NCETDFVARN+ FQ   +  S AC+ Y
Sbjct: 66  MGWSKATKLEGRNTTQGLIGIMVKNNIGAMVEVNCETDFVARNQSFQKFVQAASTACVRY 125

Query: 126 TKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNED 185
              Q++      KV L++  L+ +   + KSLADH+A++I +VGEN  L RA C    E 
Sbjct: 126 MD-QIEGDANLTKVGLNSESLKQIKLEDGKSLADHLALMIGTVGENASLNRAICFKAPES 184

Query: 186 HDVAGFTHPSPGLE--HTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPK 243
            ++ G+ HP+P  E     P  GK+GS++ ++        +    VA+++CQHV+GM P 
Sbjct: 185 INLTGYVHPAPTEEVPLDVPQFGKYGSILAFKHTSADSNGE----VAKKVCQHVVGMKPA 240

Query: 244 SIGSE-EDTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESE 302
            IG +  D P +D ++ET + +QE+L DP+  V EV+ A  ++ V+F RFECGE  +  +
Sbjct: 241 KIGDKTRDEPAKDKDDETCLIYQEYLADPSYTVAEVLEANNVEVVDFQRFECGEKIKMDD 300

Query: 303 ET 304
           ET
Sbjct: 301 ET 302
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.
Aedes aegypti (taxid: 7159)
>sp|B0WC25|EFTS_CULQU Elongation factor Ts, mitochondrial OS=Culex quinquefasciatus GN=CPIJ004698 PE=3 SV=1 Back     alignment and function description
>sp|Q9VJC7|EFTS_DROME Elongation factor Ts, mitochondrial OS=Drosophila melanogaster GN=CG6412 PE=2 SV=1 Back     alignment and function description
>sp|Q9CZR8|EFTS_MOUSE Elongation factor Ts, mitochondrial OS=Mus musculus GN=Tsfm PE=2 SV=1 Back     alignment and function description
>sp|A1L2P7|EFTS_XENLA Elongation factor Ts, mitochondrial OS=Xenopus laevis GN=tsfm PE=2 SV=1 Back     alignment and function description
>sp|P43896|EFTS_BOVIN Elongation factor Ts, mitochondrial OS=Bos taurus GN=TSFM PE=1 SV=1 Back     alignment and function description
>sp|Q9QYU2|EFTS_RAT Elongation factor Ts, mitochondrial OS=Rattus norvegicus GN=Tsfm PE=2 SV=1 Back     alignment and function description
>sp|P43897|EFTS_HUMAN Elongation factor Ts, mitochondrial OS=Homo sapiens GN=TSFM PE=1 SV=2 Back     alignment and function description
>sp|B5X5B4|EFTS_SALSA Elongation factor Ts, mitochondrial OS=Salmo salar GN=tsfm PE=2 SV=1 Back     alignment and function description
>sp|C3YEM5|EFTS_BRAFL Elongation factor Ts, mitochondrial OS=Branchiostoma floridae GN=BRAFLDRAFT_84221 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
156543338302 PREDICTED: elongation factor Ts, mitocho 0.910 0.940 0.486 2e-73
91083925312 PREDICTED: similar to elongation factor 0.913 0.913 0.465 2e-71
124487676278 putative elongation factor Ts [Maconelli 0.823 0.924 0.511 1e-69
193650195331 PREDICTED: elongation factor Ts, mitocho 0.926 0.873 0.444 4e-69
158300004323 AGAP009234-PA [Anopheles gambiae str. PE 0.958 0.925 0.452 5e-68
157130038307 elongation factor ts [Aedes aegypti] gi| 0.932 0.947 0.447 8e-67
170036819317 elongation factor ts [Culex quinquefasci 0.932 0.917 0.44 1e-66
114051515308 elongation factor Ts [Bombyx mori] gi|95 0.900 0.912 0.434 3e-66
322786095303 hypothetical protein SINV_01599 [Solenop 0.897 0.924 0.457 2e-65
332021954303 Elongation factor Ts, mitochondrial [Acr 0.858 0.884 0.471 3e-65
>gi|156543338|ref|XP_001607434.1| PREDICTED: elongation factor Ts, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 204/298 (68%), Gaps = 14/298 (4%)

Query: 6   SSFLARFFHASANQL--TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQA 63
           S+ + RF  +++N L  + NKSLL KLRKKTGY+F NCKKAL+L+E DL KAE+WL+EQA
Sbjct: 3   SNRIVRFI-STSNILWQSPNKSLLAKLRKKTGYTFANCKKALELHENDLEKAEQWLKEQA 61

Query: 64  KELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACL 123
           ++LGW+KA KL GR TSQGLI+  V+  H +++E NCETDFVARNKQF G+A++++ A L
Sbjct: 62  QQLGWSKAEKLQGRSTSQGLIAAIVDKNHGSLIEINCETDFVARNKQFHGLADIVASAVL 121

Query: 124 NYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVN 183
            +T   V     + K  LD   L++L   + K LADH A+ I ++GEN+ LRRA C+ V 
Sbjct: 122 KHT-VSVASDGLYNKAILDADALKALKALDGKLLADHCALTIGTLGENIGLRRALCMNVP 180

Query: 184 EDHDVAGFTHPSPGLEHTGPI-LGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNP 242
           +D  + G+THP+P     GPI  G++G+L+ Y   KT + Q   +++ +QLCQH+IGMNP
Sbjct: 181 DDVILTGYTHPAPA--EAGPITYGRYGALLAY---KTEETQ---EDIGKQLCQHIIGMNP 232

Query: 243 KSIGSEE-DTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCE 299
             IG  E D P ++ +EET + HQEFLLDP+  V +++     + ++F RFE GE  E
Sbjct: 233 TKIGDPEVDQPQKNSDEETALIHQEFLLDPSMTVQQLLAETKTQILDFARFEMGEVVE 290

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91083925|ref|XP_974752.1| PREDICTED: similar to elongation factor ts [Tribolium castaneum] gi|270006739|gb|EFA03187.1| hypothetical protein TcasGA2_TC013107 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|124487676|gb|ABN11926.1| putative elongation factor Ts [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|193650195|ref|XP_001949598.1| PREDICTED: elongation factor Ts, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|158300004|ref|XP_320011.4| AGAP009234-PA [Anopheles gambiae str. PEST] gi|157013791|gb|EAA14750.5| AGAP009234-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157130038|ref|XP_001655529.1| elongation factor ts [Aedes aegypti] gi|122069482|sp|Q17PI0.1|EFTS_AEDAE RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|108884412|gb|EAT48637.1| AAEL000331-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170036819|ref|XP_001846259.1| elongation factor ts [Culex quinquefasciatus] gi|313118217|sp|B0WC25.1|EFTS_CULQU RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|167879702|gb|EDS43085.1| elongation factor ts [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|114051515|ref|NP_001040359.1| elongation factor Ts [Bombyx mori] gi|95102626|gb|ABF51251.1| elongation factor Ts [Bombyx mori] Back     alignment and taxonomy information
>gi|322786095|gb|EFZ12704.1| hypothetical protein SINV_01599 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332021954|gb|EGI62284.1| Elongation factor Ts, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
MGI|MGI:1913649324 Tsfm "Ts translation elongatio 0.875 0.842 0.411 1.2e-51
UNIPROTKB|P43897325 TSFM "Elongation factor Ts, mi 0.846 0.812 0.409 1.3e-50
UNIPROTKB|P43896338 TSFM "Elongation factor Ts, mi 0.875 0.807 0.402 9.5e-50
RGD|1593058324 Tsfm "Ts translation elongatio 0.871 0.839 0.405 2e-49
FB|FBgn0032646318 CG6412 [Drosophila melanogaste 0.846 0.830 0.391 1.1e-48
UNIPROTKB|F1PBM5321 METTL21B "Elongation factor Ts 0.878 0.853 0.386 1.6e-47
ZFIN|ZDB-GENE-061215-17311 tsfm "Ts translation elongatio 0.858 0.861 0.368 9.1e-45
UNIPROTKB|F8W6R3285 TSFM "Elongation factor Ts, mi 0.740 0.810 0.382 2.6e-40
WB|WBGene00010094316 tsfm-1 [Caenorhabditis elegans 0.721 0.712 0.377 1.1e-38
UNIPROTKB|C9JT21169 TSFM "Elongation factor Ts" [H 0.528 0.976 0.455 4e-35
MGI|MGI:1913649 Tsfm "Ts translation elongation factor, mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 118/287 (41%), Positives = 179/287 (62%)

Query:    13 FHA--SANQLTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAK 70
             FHA  S +   ++K LL KLR+KTGYSF NCKKAL+    DL +AE WL +QA++ GW+K
Sbjct:    33 FHAGPSLSSAASSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEDWLHKQAQKEGWSK 92

Query:    71 ASKLAGRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQV 130
             A+KL GRKT +GLI +  EG  A +VE NCETDFV+RN +FQ + + ++L  + + +   
Sbjct:    93 AAKLHGRKTKEGLIGLLQEGNTAVLVEVNCETDFVSRNLKFQQLVQQVALGTMAHCQNLT 152

Query:   131 QPQEPFAKVFLDTAQLQSLA-GPENK-SLADHVAILISSVGENLVLRRAACVTVNEDHDV 188
                  ++K FL++++L  LA GP+ + SL D +A+ I  +GEN++L+RAA V V     V
Sbjct:   153 DRLSTYSKGFLNSSELSELAAGPDREGSLKDQLALAIGKLGENMILKRAAWVKVPSGFYV 212

Query:   189 AGFTH---PSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSI 245
               + H    SP L++   +LGK+G+L++ +   T ++  N++ V R+L QHV+GM P S+
Sbjct:   213 GSYVHGVTQSPSLQNL--VLGKYGALVICE---TPEQIANLEEVGRRLGQHVVGMAPLSV 267

Query:   246 GSXXXXXXXXXXXXXIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRF 292
             GS              M  Q +LLDP+  +G+ +   G+  V+F+RF
Sbjct:   268 GSLDDEPGGETETR--MLPQPYLLDPSITLGQYVQPQGVTVVDFVRF 312
GO:0003746 "translation elongation factor activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0006412 "translation" evidence=IEA
GO:0006414 "translational elongation" evidence=IEA
UNIPROTKB|P43897 TSFM "Elongation factor Ts, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P43896 TSFM "Elongation factor Ts, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1593058 Tsfm "Ts translation elongation factor, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0032646 CG6412 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBM5 METTL21B "Elongation factor Ts" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061215-17 tsfm "Ts translation elongation factor, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6R3 TSFM "Elongation factor Ts, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00010094 tsfm-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|C9JT21 TSFM "Elongation factor Ts" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C3MBQ3EFTS_RHISNNo assigned EC number0.30930.82370.8371yesN/A
Q20819EFTS_CAEELNo assigned EC number0.35250.85570.8449yesN/A
A8GM33EFTS_RICAHNo assigned EC number0.30030.83010.8381yesN/A
Q8RT66EFTS_BARBKNo assigned EC number0.30540.79480.8078yesN/A
Q49X42EFTS_STAS1No assigned EC number0.28570.80120.8561yesN/A
Q9A704EFTS_CAUCRNo assigned EC number0.31770.80440.8044yesN/A
Q2IW81EFTS_RHOP2No assigned EC number0.28520.80440.8149yesN/A
A8F0J0EFTS_RICM5No assigned EC number0.29620.82690.8349yesN/A
A1A5Z3EFTS_DANRENo assigned EC number0.39140.87170.8918yesN/A
Q92Q54EFTS_RHIMENo assigned EC number0.30520.82050.8338yesN/A
Q9VJC7EFTS_DROMENo assigned EC number0.41540.88140.8647yesN/A
Q9ZE60EFTS_RICPRNo assigned EC number0.29010.82690.8349yesN/A
Q1QMN6EFTS_NITHXNo assigned EC number0.26870.81080.8241yesN/A
C3YEM5EFTS_BRAFLNo assigned EC number0.39810.93910.8851yesN/A
B9JX32EFTS_AGRVSNo assigned EC number0.30620.79160.8019yesN/A
B9JEX1EFTS_AGRRKNo assigned EC number0.30790.80760.8181yesN/A
Q8UFM2EFTS_AGRT5No assigned EC number0.29520.80760.8181yesN/A
B3Q7K3EFTS_RHOPTNo assigned EC number0.27670.80760.8181yesN/A
P61338EFTS_RHOPANo assigned EC number0.27670.80760.8181yesN/A
P43896EFTS_BOVINNo assigned EC number0.44080.85570.7899yesN/A
P43897EFTS_HUMANNo assigned EC number0.42750.84610.8123yesN/A
Q11IJ7EFTS_MESSBNo assigned EC number0.29330.81410.8273yesN/A
A6U8K3EFTS_SINMWNo assigned EC number0.30210.82050.8338yesN/A
Q0APW4EFTS_MARMMNo assigned EC number0.27890.80760.8076yesN/A
Q9CZR8EFTS_MOUSENo assigned EC number0.43640.88780.8549yesN/A
A7HY18EFTS_PARL1No assigned EC number0.31740.80760.8181yesN/A
B8GWS2EFTS_CAUCNNo assigned EC number0.31770.80440.8044yesN/A
Q9QYU2EFTS_RATNo assigned EC number0.43660.87170.8395yesN/A
A8EXF1EFTS_RICCKNo assigned EC number0.30930.81410.8220yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
PRK09377290 PRK09377, tsf, elongation factor Ts; Provisional 1e-52
COG0264296 COG0264, Tsf, Translation elongation factor Ts [Tr 8e-51
TIGR00116291 TIGR00116, tsf, translation elongation factor Ts 7e-35
PRK12332198 PRK12332, tsf, elongation factor Ts; Reviewed 2e-22
CHL00098200 CHL00098, tsf, elongation factor Ts 8e-19
pfam00889134 pfam00889, EF_TS, Elongation factor TS 4e-12
pfam00889134 pfam00889, EF_TS, Elongation factor TS 4e-10
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional Back     alignment and domain information 
 Score =  173 bits (442), Expect = 1e-52
 Identities = 97/311 (31%), Positives = 151/311 (48%), Gaps = 70/311 (22%)

Query: 25  SLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLI 84
           +L+ +LR++TG    +CKKAL   + D+ KA +WL+++    G AKA+K AGR  ++GL+
Sbjct: 7   ALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKK----GLAKAAKKAGRVAAEGLV 62

Query: 85  SIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTA 144
           +  V+G    +VE N ETDFVA+N+ FQ +A  ++ A L      V   E    + LD  
Sbjct: 63  AAKVDGNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADV---EALLALKLD-- 117

Query: 145 QLQSLAGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEHTGPI 204
                      ++ +    LI+ +GEN+ LRR A +  +    V  + H           
Sbjct: 118 ---------GGTVEEARTELIAKIGENISLRRFARLEKDGGV-VGSYLHG---------- 157

Query: 205 LGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNED--------- 255
            G+ G L+    L+ GD++     +A+ +  H+  MNP+ + S ED P E          
Sbjct: 158 GGRIGVLVA---LEGGDEE-----LAKDIAMHIAAMNPEYL-SREDVPAEVVEKEREIAK 208

Query: 256 --------PEE---------------ETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRF 292
                   PEE               E ++  Q F+ DP + VG+++  AG K V F+RF
Sbjct: 209 EQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKEAGAKVVGFVRF 268

Query: 293 ECGEGCEESEE 303
           E GEG E+ EE
Sbjct: 269 EVGEGIEKKEE 279

Length = 290
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts Back     alignment and domain information
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed Back     alignment and domain information
>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
COG0264296 Tsf Translation elongation factor Ts [Translation, 100.0
TIGR00116290 tsf translation elongation factor Ts. This protein 100.0
PRK09377290 tsf elongation factor Ts; Provisional 100.0
KOG1071|consensus340 100.0
PF00889221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 100.0
PRK12332198 tsf elongation factor Ts; Reviewed 100.0
CHL00098200 tsf elongation factor Ts 100.0
CHL00098200 tsf elongation factor Ts 99.91
PRK12332198 tsf elongation factor Ts; Reviewed 99.85
COG0264296 Tsf Translation elongation factor Ts [Translation, 99.67
TIGR00116290 tsf translation elongation factor Ts. This protein 99.66
PF00889221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 99.65
PRK09377290 tsf elongation factor Ts; Provisional 99.63
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 98.52
PRK06369115 nac nascent polypeptide-associated complex protein 97.73
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 97.67
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 97.3
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 97.24
KOG1071|consensus 340 97.06
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 95.28
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 95.22
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 94.14
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 93.0
PF0054268 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal 90.96
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 89.39
PRK0677193 hypothetical protein; Provisional 86.52
smart0054643 CUE Domain that may be involved in binding ubiquit 85.66
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 82.3
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-82  Score=581.50  Aligned_cols=255  Identities=37%  Similarity=0.606  Sum_probs=238.4

Q ss_pred             cccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCceEEEEe--CCcEEEEEE
Q psy17364         20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAV--EGKHATMVE   97 (312)
Q Consensus        20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~--~~~~gvlvE   97 (312)
                      +.+++++||+||++||+|||||||||+|++||+|+|++|||+    +|.++|.||++|.++||+|.+++  +++.|+|||
T Consensus         2 ~~ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~----kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vE   77 (296)
T COG0264           2 AEITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLRE----KGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVE   77 (296)
T ss_pred             CcccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHH----hchHhhhhhcCcchhcceEEEEEcCCCcEEEEEE
Confidence            468999999999999999999999999999999999999999    59999999999999999999998  556999999


Q ss_pred             EeccchhhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhcCHHHHhcccCCCCCCHHHHHHHHHHhhCCceEEEEE
Q psy17364         98 FNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRA  177 (312)
Q Consensus        98 lncETDFVArne~F~~la~~ia~~i~a~~p~~~~~~g~i~k~~~~~~~l~q~~~~~~~TV~d~i~~~i~~iGEnI~l~rf  177 (312)
                      |||||||||||+.|+.|+++|+.++++..|.             +++.|...+.++++||.+.+..+++++||||.||||
T Consensus        78 vN~ETDFVAkN~~F~~l~~~ia~~~l~~~~~-------------~ve~l~~~~~~~~~tv~e~~~~~~AkIGENi~lRR~  144 (296)
T COG0264          78 VNCETDFVAKNAEFQELANKIAKAALEKKPA-------------DVEELKAAFEPGGKTVEEEIAALIAKIGENISLRRF  144 (296)
T ss_pred             EeccccceeCChhHHHHHHHHHHHHHHhCcc-------------cHHHHHhhhcccCccHHHHHHHHHHHhccceeEEEE
Confidence            9999999999999999999999999999987             567777777777999999999999999999999999


Q ss_pred             EEEEeCCceeEEEeecCCCCCCCCCCCCccEEEEEEEeecCCCccccchHHHHHHHHHHHhhcCCcccCCCC--------
Q psy17364        178 ACVTVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEE--------  249 (312)
Q Consensus       178 ~~~~~geg~~~~~Y~H~~~~~~~~~~~~Gkig~lV~~~~~~~~~~~~~~~~~ak~iAmhi~a~~P~~l~~~~--------  249 (312)
                      ..++.++ +.+++|+|++          |||||||.+++..  .    ...++|+|||||||++|.||+.+|        
T Consensus       145 ~~~~~~~-~~v~~Y~H~~----------griGVlv~~~~~~--~----~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~  207 (296)
T COG0264         145 AVLEAGD-GVVGSYLHGN----------GRIGVLVALKGGA--A----DEELAKDIAMHIAAMNPQYLSREDVPAEVVEK  207 (296)
T ss_pred             EEeecCc-ccEEEEEeCC----------CcEEEEEEEeccc--h----HHHHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence            9998766 5799999997          8999999999851  2    578999999999999999999986        


Q ss_pred             ------------CCCCCC-----------CcccccccccccccCCCCcHHHHHHHcCCceeeEEEEEecCccccccchHh
Q psy17364        250 ------------DTPNED-----------PEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQT  306 (312)
Q Consensus       250 ------------~kp~~~-----------~~~e~~Ll~Q~fi~d~~~tV~~~l~~~~~~v~~F~r~~vGe~ie~~~~~~~  306 (312)
                                  |||+++           |+.|+|||+|+|++||++||+++|++.+++|.+|+||++|||||++++||+
T Consensus       208 Er~i~~~~~~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~~~~v~~FvR~evGegieK~~~dFa  287 (296)
T COG0264         208 EREIFLAQLKAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEANAKVTEFVRFEVGEGIEKKEEDFA  287 (296)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhcCceeeeeeeeeccCCceeccccHH
Confidence                        899864           689999999999999999999999999999999999999999999999999


Q ss_pred             Hh
Q psy17364        307 QA  308 (312)
Q Consensus       307 ~~  308 (312)
                      +=
T Consensus       288 ~E  289 (296)
T COG0264         288 AE  289 (296)
T ss_pred             HH
Confidence            74

>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>KOG1071|consensus Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>KOG1071|consensus Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PRK06771 hypothetical protein; Provisional Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
1xb2_B291 Crystal Structure Of Bos Taurus Mitochondrial Elong 1e-52
3mmp_A 678 Structure Of The Qb Replicase, An Rna-Dependent Rna 1e-12
1efu_B282 Elongation Factor Complex Ef-TuEF-Ts From Escherich 2e-12
3agp_A 1289 Structure Of Viral Polymerase Form I Length = 1289 3e-12
1aip_C196 Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt 7e-11
2cp9_A64 Solution Structure Of Rsgi Ruh-042, A Uba Domain Fr 3e-09
1tfe_A145 Dimerization Domain Of Ef-Ts From T. Thermophilus L 6e-04
>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291 Back     alignment and structure 
Iteration: 1

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/276 (40%), Positives = 172/276 (62%), Gaps = 12/276 (4%)
Query: 22  TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQ 81
           ++K LL KLR+KTGYSF NCKKAL+    DL +AE WL +QA++ GW+KA++L GRKT +
Sbjct: 3   SSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKE 62
Query: 82  GLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFL 141
           GLI +  EG    +VE NCETDFV+RN +FQ + + ++L  L + +        ++K FL
Sbjct: 63  GLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFL 122
Query: 142 DTAQLQSL-AGPENK-SLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHP---SP 196
           ++++L  L AGPE + SL D +A+ I  +GEN++L+RAA V V     V  + H    SP
Sbjct: 123 NSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSP 182
Query: 197 GLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSXXXXXXXXX 256
            L +   +LGK+G+L++ +   T + + N+ ++ R+L QHV+GM P S+GS         
Sbjct: 183 SLHNL--VLGKYGALVICE---TSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEA 237
Query: 257 XXXXIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRF 292
                M  Q +LLDP+  +G+ +   G+  V+F+RF
Sbjct: 238 ETK--MLSQPYLLDPSITLGQYVQPHGVSVVDFVRF 271
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 Back     alignment and structure
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282 Back     alignment and structure
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 Back     alignment and structure
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 Back     alignment and structure
>pdb|2CP9|A Chain A, Solution Structure Of Rsgi Ruh-042, A Uba Domain From Human Mitochondrial Elongation Factor Ts Length = 64 Back     alignment and structure
>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 1e-94
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 3e-19
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 2e-16
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 2e-05
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 8e-11
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 6e-06
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291 Back     alignment and structure
 Score =  281 bits (720), Expect = 1e-94
 Identities = 116/284 (40%), Positives = 177/284 (62%), Gaps = 8/284 (2%)

Query: 23  NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQG 82
           +K LL KLR+KTGYSF NCKKAL+    DL +AE WL +QA++ GW+KA++L GRKT +G
Sbjct: 4   SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 63

Query: 83  LISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLD 142
           LI +  EG    +VE NCETDFV+RN +FQ + + ++L  L + +        ++K FL+
Sbjct: 64  LIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLN 123

Query: 143 TAQLQSL--AGPENKSLADHVAILISSVGENLVLRRAACVTVNEDHDVAGFTHPSPGLEH 200
           +++L  L        SL D +A+ I  +GEN++L+RAA V V     V  + H +     
Sbjct: 124 SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPS 183

Query: 201 TGPI-LGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDPEEE 259
              + LGK+G+L++    +T + + N+ ++ R+L QHV+GM P S+GS +D P    E E
Sbjct: 184 LHNLVLGKYGALVI---CETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGG--EAE 238

Query: 260 TIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEE 303
           T M  Q +LLDP+  +G+ +   G+  V+F+RFECGEG + ++ 
Sbjct: 239 TKMLSQPYLLDPSITLGQYVQPHGVSVVDFVRFECGEGEDAADA 282
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 100.0
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 100.0
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 100.0
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 99.95
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 99.9
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 99.89
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 99.8
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 99.58
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 99.32
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 97.52
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.51
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 97.24
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 97.08
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.93
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 96.88
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.84
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.78
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 96.7
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 96.67
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 96.67
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.65
2dna_A67 Unnamed protein product; ubiquitin associated doma 96.56
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 96.51
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.49
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 96.43
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 96.38
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 96.38
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 96.26
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 96.08
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 96.03
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 95.94
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 95.87
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 95.85
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 95.41
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 95.39
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 95.23
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 95.2
2cwb_A108 Chimera of immunoglobulin G binding protein G and 95.14
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 95.07
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 94.93
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 94.83
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 94.54
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 93.53
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 94.28
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 93.66
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 93.32
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 92.98
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 92.26
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 91.55
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 90.96
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 90.63
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 90.22
2oo9_A46 E3 ubiquitin-protein ligase CBL; alpha-helical dom 90.0
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 88.4
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 87.46
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 87.39
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 86.85
1ctf_A74 Ribosomal protein L7/L12; 1.70A {Escherichia coli} 80.04
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-83  Score=599.60  Aligned_cols=280  Identities=40%  Similarity=0.678  Sum_probs=238.1

Q ss_pred             ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCceEEEEeCCcEEEEEEEec
Q psy17364         21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNC  100 (312)
Q Consensus        21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~~~~~gvlvElnc  100 (312)
                      ++|+++||+||++||+|||||||||+|+|||+|+|++|||++++++|+++|.||++|.|+||+|+++++++.||||||||
T Consensus         2 ~~ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNc   81 (291)
T 1xb2_B            2 ASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNC   81 (291)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEec
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcchhh-hhcCHHHHhcccCCCCCC--HHHHHHHHHHhhCCceEEEEE
Q psy17364        101 ETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAK-VFLDTAQLQSLAGPENKS--LADHVAILISSVGENLVLRRA  177 (312)
Q Consensus       101 ETDFVArne~F~~la~~ia~~i~a~~p~~~~~~g~i~k-~~~~~~~l~q~~~~~~~T--V~d~i~~~i~~iGEnI~l~rf  177 (312)
                      ||||||||+.|+.|+++||+++++..|...+. ....+ -+.+.+.|.+.+.+++.|  |+|.+.++++++||||.|+||
T Consensus        82 ETDFVArN~~F~~l~~~ia~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~~~~~t~tv~d~i~~~ia~iGEni~lrR~  160 (291)
T 1xb2_B           82 ETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQ-LSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRA  160 (291)
T ss_dssp             SCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCC-SSSCEEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEE
T ss_pred             ccceeeCCHHHHHHHHHHHHHHHhcCCccccc-ccccccccCCHHHHhhcccccCcchhHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999987752211 11111 123677888777767778  999999999999999999999


Q ss_pred             EEEEeCCceeEEEeecCCCCCC-CCCCCCccEEEEEEEeecCCCccccchHHHHHHHHHHHhhcCCcccCCCCCCCCCCC
Q psy17364        178 ACVTVNEDHDVAGFTHPSPGLE-HTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDP  256 (312)
Q Consensus       178 ~~~~~geg~~~~~Y~H~~~~~~-~~~~~~Gkig~lV~~~~~~~~~~~~~~~~~ak~iAmhi~a~~P~~l~~~~~kp~~~~  256 (312)
                      .++..++++.+++|+|++..+. .+.+.+||||+||.+++.++.   ..+.+++|+||||||||+|.||++++ . .+.|
T Consensus       161 ~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~---~~l~~~ak~iAmHIaA~~P~~l~~~~-v-~~gf  235 (291)
T 1xb2_B          161 AWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSLD-D-EPGG  235 (291)
T ss_dssp             EEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG---GGCHHHHHHHHHHHHHHCCSBCCCTT-S-CCCG
T ss_pred             HHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc---chHHHHHHHHHHHHHhcCCcccCHHH-h-hccc
Confidence            9999777789999999985421 234678999999999985321   12367999999999999999999864 2 3458


Q ss_pred             cccccccccccccCCCCcHHHHHHHcCCceeeEEEEEecCccccccchHh
Q psy17364        257 EEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQT  306 (312)
Q Consensus       257 ~~e~~Ll~Q~fi~d~~~tV~~~l~~~~~~v~~F~r~~vGe~ie~~~~~~~  306 (312)
                      |+|+|||+|+|++||++||+|||++.+++|++|+||+||||||++++|..
T Consensus       236 ~~E~~Ll~Q~fv~D~~~tV~~~l~~~~i~V~~F~RfevGEgiek~~~~~~  285 (291)
T 1xb2_B          236 EAETKMLSQPYLLDPSITLGQYVQPHGVSVVDFVRFECGEGEDAADAELE  285 (291)
T ss_dssp             GGCCBGGGSBCTTCTTSBHHHHHGGGTCEEEEEEEEETTCC---------
T ss_pred             hhheeeccCcccCCCCcCHHHHHHhCCCEEEEEEEEEecCcccccccccc
Confidence            99999999999999999999999999999999999999999999999864
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1xb2b2111 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), 3e-25
d1xb2b3109 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), 6e-20
d1efub485 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), 2e-15
d1xb2b156 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N 6e-14
d1aipc152 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t 1e-13
d1efub354 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t 2e-12
d1efub2143 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), 2e-07
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 95.5 bits (237), Expect = 3e-25
 Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)

Query: 76  GRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEP 135
           GRKT +GLI +  EG    +VE NCETDFV+RN +FQ + + ++L  L + +        
Sbjct: 1   GRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLST 60

Query: 136 FAKVFLDTAQLQSL--AGPENKSLADHVAILISSVGENLVLRRAACVTVN 183
           ++K FL++++L  L        SL D +A+ I  +GEN++L+RAA V V 
Sbjct: 61  YSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP 110
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109 Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85 Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56 Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52 Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54 Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 100.0
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 99.97
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 99.95
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 99.93
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 99.91
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 99.9
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 99.87
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 99.87
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 99.87
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 99.64
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 99.58
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 98.02
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 96.71
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 96.47
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 96.1
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 96.07
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.96
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 95.9
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 95.89
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 95.83
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 95.52
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 95.25
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 95.21
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 95.17
d2crna151 Suppressor of T-cell receptor signaling 2 (STS-2) 94.93
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 94.89
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 94.24
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 93.93
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 93.92
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 93.12
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 92.05
d1ctfa_68 Ribosomal protein L7/12, C-terminal domain {Escher 83.5
d1dd3a271 Ribosomal protein L7/12, C-terminal domain {Thermo 81.55
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-35  Score=244.86  Aligned_cols=103  Identities=24%  Similarity=0.464  Sum_probs=95.4

Q ss_pred             eEEEeecCCCCCCCCCCCCccEEEEEEEeecCCCccccchHHHHHHHHHHHhhcCCcccCCCC-----------------
Q psy17364        187 DVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEE-----------------  249 (312)
Q Consensus       187 ~~~~Y~H~~~~~~~~~~~~Gkig~lV~~~~~~~~~~~~~~~~~ak~iAmhi~a~~P~~l~~~~-----------------  249 (312)
                      .+++|+|+           ||||+||.+++.        .++++|+||||||||+|.||++++                 
T Consensus         2 vi~sYiH~-----------gkigvlV~~~~~--------~~e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~   62 (143)
T d1efub2           2 VLGSYQHG-----------ARIGVLVAAKGA--------DEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIA   62 (143)
T ss_dssp             EEEEEEET-----------TTEEEEEEEESC--------CHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEecC-----------CEEEEEEEecCc--------cHHHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhh
Confidence            68999994           799999999885        368999999999999999999885                 


Q ss_pred             ---CCCCCC-----------CcccccccccccccCCCCcHHHHHHHcCCceeeEEEEEecCccccccchHhHh
Q psy17364        250 ---DTPNED-----------PEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQTQA  308 (312)
Q Consensus       250 ---~kp~~~-----------~~~e~~Ll~Q~fi~d~~~tV~~~l~~~~~~v~~F~r~~vGe~ie~~~~~~~~~  308 (312)
                         |||+++           |++|+|||+|+|++||++||++||++.+++|++|+||+||||||++++|||+=
T Consensus        63 ~~~gKPe~i~eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~~~~v~~FvRfevGEGiEk~~~dfA~E  135 (143)
T d1efub2          63 MQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAE  135 (143)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHTTTCEEEEEEEEETTTTSCCCCCCHHHH
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhhhhcccccccCCceeHHHHHHhCCCEEEEEEEEEecCceeECccCHHHH
Confidence               788764           68999999999999999999999999999999999999999999999999863
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure